Query T0553 NsR123E , , 141 residues
Match_columns 141
No_of_seqs 113 out of 300
Neff 4.5
Searched_HMMs 11830
Date Fri May 21 18:06:20 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0553.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0553.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00427 PBS_linker_poly: Phyc 100.0 0 0 365.8 13.8 129 8-138 2-130 (131)
2 PF07583 PSCyt2: Protein of un 91.2 0.064 5.4E-06 30.2 3.1 44 86-130 32-75 (208)
3 PF07587 PSD1: Protein of unkn 74.1 2.6 0.00022 20.3 5.1 95 14-110 17-124 (266)
4 PF07624 PSD2: Protein of unkn 72.8 1.8 0.00015 21.3 4.1 52 17-69 25-76 (76)
5 PF10216 ChpXY: CO2 hydration 39.9 11 0.0009 16.5 3.5 84 11-128 14-108 (353)
6 PF01450 IlvC: Acetohydroxy ac 38.2 5.3 0.00045 18.4 1.5 64 63-127 5-76 (145)
7 PF05598 DUF772: Transposase d 31.1 15 0.0013 15.7 4.2 21 92-112 48-68 (77)
8 PF09824 ArsR: ArsR transcript 30.3 15 0.0013 15.6 3.0 30 42-71 111-140 (160)
9 PF12408 DUF3666: Ribose-5-pho 27.4 17 0.0014 15.3 2.9 27 56-82 16-42 (48)
10 PF08212 Lipocalin_2: Lipocali 24.4 17 0.0014 15.3 2.1 29 86-114 106-135 (143)
11 PF06464 DMAP_binding: DMAP1-b 23.8 20 0.0017 14.8 2.6 28 35-62 7-34 (111)
12 PF05120 GvpG: Gas vesicle pro 22.9 21 0.0018 14.7 5.0 42 16-61 16-57 (80)
13 PF07531 TAFH: NHR1 homology t 20.0 24 0.002 14.4 2.7 34 29-62 17-50 (96)
No 1
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 The phycobilisome linker polypeptide determines the state of aggregation and the location of the disc-shaped phycobiliprotein units within the phycobilisome and modulates their spectroscopic properties in order to mediate a directed and optimal energy transfer. The phycobilisome is a hemidiscoidal structure that is composed of two distinct substructures, a core complex (that contains the phycobiliproteins) and a number of rods radiating from the core. The linker polypeptide is also found in the chloroplast of some eukaryotes where it is required for attachment of phycocyanin to allophycocyanin in the core of the phycobilisome.; GO: 0015979 photosynthesis, 0030089 phycobilisome
Probab=100.00 E-value=0 Score=365.75 Aligned_cols=129 Identities=49% Similarity=0.819 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 79999889999999998888300022354220036889987469977899999985147888722667871678888765
Q T0553 8 AGIKDKAAIKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTK 87 (141)
Q Consensus 8 ~~~~d~~~l~~vI~AaYrQVf~~~~~~~~~~~r~~~lESqlr~g~IsVReFVr~LakS~~yr~~f~~~~~~~r~IEl~~k 87 (141)
.|..|+++++.+|+|||||||||++ +|+++|+..+|||||||+||||||||+||||++||++||++++|||+||++||
T Consensus 2 ~~~~s~~~~~~vI~AaYrQVfgn~~--~~~~eRl~~~ES~Lrng~IsvreFVr~La~S~~yr~~f~~~~~~~R~iEl~~k 79 (131)
T PF00427_consen 2 RPNASESELEEVIRAAYRQVFGNDH--PMESERLTSLESQLRNGDISVREFVRGLAKSDLYRKRFFEPNSNYRAIELAFK 79 (131)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC--HHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999999999999999965753--14543020499998869982999999997569999987026660189999998
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 540779999889999999987258145677533857888517876677533
Q T0553 88 HFLGRAPIDQAEIRKYNQILATQGIRAFINALVNSQEYNEVFGEDTVPYRR 138 (141)
Q Consensus 88 hlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FGed~VPY~R 138 (141)
|||||||+|++|+++|++|+|++|++|+||+||||+||.++||+|||||+|
T Consensus 80 hlLGR~~~~~~Ei~~~~~i~a~~G~~a~Id~lldS~EY~~~FG~d~VPy~R 130 (131)
T PF00427_consen 80 HLLGRAPYNQAEISAYSIILAEQGFEAFIDSLLDSDEYLENFGEDTVPYQR 130 (131)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHCCCCCCCCCC
T ss_conf 872889999999999999999238099999996879999875998899788
No 2
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 This domain is found in a family of paralogues in the planctomycetes. The function is not known. It is found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=91.16 E-value=0.064 Score=30.25 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=23.3
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCC
Q ss_conf 655407799998899999999872581456775338578885178
Q T0553 86 TKHFLGRAPIDQAEIRKYNQILATQGIRAFINALVNSQEYNEVFG 130 (141)
Q Consensus 86 ~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG 130 (141)
+--|.|++|- .+|+.++..--...-++.+||.|+.|++|.+.++
T Consensus 32 ~lDL~Gl~Pt-~eEv~~Fl~d~s~~~~~~lVD~LLasp~y~e~wa 75 (208)
T PF07583_consen 32 YLDLTGLPPT-PEEVRAFLADQSPDKREKLVDRLLASPHYGERWA 75 (208)
T ss_pred HHHHHCCCCC-HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9998079959-9999999857985799999999977808999999
No 3
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR011444 This domain is found in a family of paralogues in the planctomycetes. The function is not known. It is found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=74.11 E-value=2.6 Score=20.30 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHH-----------CCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHH
Q ss_conf 8999999999888830002235422-----------00368899874699778999999851478887226678716788
Q T0553 14 AAIKTLISAAYRQIFERDIAPYIAQ-----------NEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVI 82 (141)
Q Consensus 14 ~~l~~vI~AaYrQVf~~~~~~~~~~-----------~r~~~lESqlr~g~IsVReFVr~LakS~~yr~~f~~~~~~~r~I 82 (141)
---..+++-...+.||+-++...+. +-|..|...|....-++|.+||.|+.|+.|++.=-....+. .+
T Consensus 17 l~aRviVNRvW~~~fGrGiV~pvdDfg~~g~~PshPeLLD~La~~F~~~g~dlK~L~R~I~~S~tYq~sS~~~~~~~-~~ 95 (266)
T PF07587_consen 17 LFARVIVNRVWQHLFGRGIVEPVDDFGSQGNPPSHPELLDWLAQEFVDHGWDLKRLIRLIVLSRTYQQSSQPNEENL-EI 95 (266)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCHHH-CC
T ss_conf 15999999999998098673896555588999999899999999999869999999999985598848686880220-46
Q ss_pred HHHHHHHCCCCCCC--HHHHHHHHHHHHHC
Q ss_conf 88765540779999--88999999998725
Q T0553 83 ELGTKHFLGRAPID--QAEIRKYNQILATQ 110 (141)
Q Consensus 83 El~~khlLGR~p~~--~~Ei~~~~~i~a~~ 110 (141)
+ --.+++.|++-- .+|.+.-+.+.++.
T Consensus 96 d-p~n~~~~~~~~rRL~AE~irDsil~~sg 124 (266)
T PF07587_consen 96 D-PDNRLFARFPRRRLSAEQIRDSILQASG 124 (266)
T ss_pred C-CCCHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9-7553125799928899999999999987
No 4
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C-terminus of a family of cytochrome-like proteins in Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=72.79 E-value=1.8 Score=21.26 Aligned_cols=52 Identities=8% Similarity=0.166 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHH
Q ss_conf 99999998888300022354220036889987469977899999985147888
Q T0553 17 KTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYL 69 (141)
Q Consensus 17 ~~vI~AaYrQVf~~~~~~~~~~~r~~~lESqlr~g~IsVReFVr~LakS~~yr 69 (141)
..+++..+.=-+||.+. ..+......+..+++.+.-+++++|.+|..|+.||
T Consensus 25 ~~~~~kl~~YAlGR~~~-~~D~~~i~~i~~~~~~~~y~~~~Li~~iV~S~~Fr 76 (76)
T PF07624_consen 25 RCFAEKLLTYALGRPLE-FSDRCEIDAIVEAFKANGYRLRDLILAIVTSDAFR 76 (76)
T ss_pred HHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 99999999998389998-11199999999999886998999999997584679
No 5
>PF10216 ChpXY: CO2 hydration protein (ChpXY)
Probab=39.92 E-value=11 Score=16.53 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=54.6
Q ss_pred CCHHHHHHH--HHHHHHHHHCCHHHHHHHHCCHHHHHHHHH---------CCCCCHHHHHHHHHCCHHHHHHCCCCCCCH
Q ss_conf 998899999--999988883000223542200368899874---------699778999999851478887226678716
Q T0553 11 KDKAAIKTL--ISAAYRQIFERDIAPYIAQNEFSGWESKLG---------NGEITVKEFIEGLGYSNLYLKEFYTPYPNT 79 (141)
Q Consensus 11 ~d~~~l~~v--I~AaYrQVf~~~~~~~~~~~r~~~lESqlr---------~g~IsVReFVr~LakS~~yr~~f~~~~~~~ 79 (141)
++++.+-+| |-.+|--|+.- +..+-+--+|.||. ||++++....+-+ |.---|+
T Consensus 14 Dtp~nlleVVgilksYgvvlDa-----YsrnL~yiae~qFL~~fP~FKyF~Ge~~~~kLl~Hl----------~hDRIN~ 78 (353)
T PF10216_consen 14 DTPDNLLEVVGILKSYGVVLDA-----YSRNLLYIAERQFLNPFPFFKYFNGEISLPKLLHHL----------WHDRINF 78 (353)
T ss_pred CCHHHHHHHHHHHHHHCCHHHH-----HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHH----------HHCHHHH
T ss_conf 9758799999999874102998-----888899999866303225877717887889999997----------3111015
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHC
Q ss_conf 7888876554077999988999999998725814567753385788851
Q T0553 80 KVIELGTKHFLGRAPIDQAEIRKYNQILATQGIRAFINALVNSQEYNEV 128 (141)
Q Consensus 80 r~IEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~ 128 (141)
.+.|.|-|..+=- ... -.|+++||+||.++
T Consensus 79 EyAEyCmkaM~WH---------------g~G----glDaYLDs~ef~~~ 108 (353)
T PF10216_consen 79 EYAEYCMKAMFWH---------------GGG----GLDAYLDSEEFKEN 108 (353)
T ss_pred HHHHHHHHHHHCC---------------CCC----CCCCCCCCHHHHHH
T ss_conf 9999999987516---------------778----85521288999999
No 6
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine . The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor. ; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process; PDB: 1yrl_C 1yve_J 1qmg_C 3fr7_A 3fr8_A 1np3_A.
Probab=38.22 E-value=5.3 Score=18.42 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=37.8
Q ss_pred HCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCH--------HHHHHHHHHHHHCCCHHHHHHHCCCHHHHH
Q ss_conf 51478887226678716788887655407799998--------899999999872581456775338578885
Q T0553 63 GYSNLYLKEFYTPYPNTKVIELGTKHFLGRAPIDQ--------AEIRKYNQILATQGIRAFINALVNSQEYNE 127 (141)
Q Consensus 63 akS~~yr~~f~~~~~~~r~IEl~~khlLGR~p~~~--------~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~ 127 (141)
.+||+|-.+-.=+-.-.-.|+.+|.+|. ++=+++ .|+---.++++++|+..+.+++=|..||-.
T Consensus 5 ~~sDLfGEq~vL~Gg~~~lv~~~Fe~Lv-eaG~~pE~Ay~e~~~e~klI~dli~~~Gi~~M~~~iS~TAeyG~ 76 (145)
T PF01450_consen 5 TESDLFGEQAVLCGGVHALVEAGFETLV-EAGYSPEMAYFECLHETKLIVDLIYEGGIAGMYDSISDTAEYGA 76 (145)
T ss_dssp HHHHH---TTTTHHHHHHHHHHHHHHHH-H----HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCH
T ss_conf 8876431169999899999999999999-85998899999999999999999998769999986587987220
No 7
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This family consists of several proteins from Sulfolobus solfataricus described as first ORF in transposon ISC1212.
Probab=31.06 E-value=15 Score=15.65 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=10.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 799998899999999872581
Q T0553 92 RAPIDQAEIRKYNQILATQGI 112 (141)
Q Consensus 92 R~p~~~~Ei~~~~~i~a~~G~ 112 (141)
.++-+.+-+..+-..+..+|.
T Consensus 48 ~~~pd~stl~rfr~rl~~~~~ 68 (77)
T PF05598_consen 48 EPVPDHSTLSRFRKRLIEHGL 68 (77)
T ss_pred CCCCCHHHHHHHHHHHHHCCH
T ss_conf 579982799999999867209
No 8
>PF09824 ArsR: ArsR transcriptional regulator
Probab=30.30 E-value=15 Score=15.57 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=25.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 688998746997789999998514788872
Q T0553 42 SGWESKLGNGEITVKEFIEGLGYSNLYLKE 71 (141)
Q Consensus 42 ~~lESqlr~g~IsVReFVr~LakS~~yr~~ 71 (141)
..+|....+|.+|+-+..|.+..|..|-+.
T Consensus 111 ~~ie~~i~~g~~si~dlsr~~g~sp~~irg 140 (160)
T PF09824_consen 111 EKIEAEIENGNTSIGDLSRKLGISPTFIRG 140 (160)
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999985982189999881878999999
No 9
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; PDB: 3c5y_N 2ppw_A.
Probab=27.41 E-value=17 Score=15.26 Aligned_cols=27 Identities=4% Similarity=0.255 Sum_probs=21.5
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCHHHH
Q ss_conf 999999851478887226678716788
Q T0553 56 KEFIEGLGYSNLYLKEFYTPYPNTKVI 82 (141)
Q Consensus 56 ReFVr~LakS~~yr~~f~~~~~~~r~I 82 (141)
+|+|++-..++-|++.||.++-.-...
T Consensus 16 qdlvK~AvsGe~Fqe~FF~Ncq~~eI~ 42 (48)
T PF12408_consen 16 QDLVKTAVSGERFQECFFANCQDEEIA 42 (48)
T ss_dssp HHHHHHHC---HHHHHHCCC---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999998823398999988428808999
No 10
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR013208 Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.; PDB: 3ebw_B 1qwd_B 2aco_B.
Probab=24.40 E-value=17 Score=15.35 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=24.8
Q ss_pred HHHHCCCCCC-CHHHHHHHHHHHHHCCCHH
Q ss_conf 6554077999-9889999999987258145
Q T0553 86 TKHFLGRAPI-DQAEIRKYNQILATQGIRA 114 (141)
Q Consensus 86 ~khlLGR~p~-~~~Ei~~~~~i~a~~G~~a 114 (141)
+--+|.|.|. +++.+.+....+.++||+.
T Consensus 106 ~~WILSR~p~l~~~~~~~~~~~~~~~G~d~ 135 (143)
T PF08212_consen 106 YLWILSRTPQLSEETYEKILARAEEQGYDV 135 (143)
T ss_dssp --EEEESSSS--HHHHHHHHHHHHH----G
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCH
T ss_conf 999996789999999999999999929988
No 11
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=23.76 E-value=20 Score=14.84 Aligned_cols=28 Identities=18% Similarity=0.257 Sum_probs=23.6
Q ss_pred HHHHCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 5422003688998746997789999998
Q T0553 35 YIAQNEFSGWESKLGNGEITVKEFIEGL 62 (141)
Q Consensus 35 ~~~~~r~~~lESqlr~g~IsVReFVr~L 62 (141)
..-..++..|+-.+..|+||-+++.+.-
T Consensus 7 ~~v~~~L~~L~~e~~~GdiT~KGY~kkr 34 (111)
T PF06464_consen 7 PEVRERLKELDLELSEGDITEKGYEKKR 34 (111)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999999987411422099999999
No 12
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles .
Probab=22.93 E-value=21 Score=14.74 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999999988883000223542200368899874699778999999
Q T0553 16 IKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEG 61 (141)
Q Consensus 16 l~~vI~AaYrQVf~~~~~~~~~~~r~~~lESqlr~g~IsVReFVr~ 61 (141)
.+.|..+|=+|...- .--..++..++-+|..|+||--+|-+.
T Consensus 16 ae~I~~~Ae~e~~D~----~~i~~~L~~L~~~~e~GEIseEEf~~~ 57 (80)
T PF05120_consen 16 AEQIQEQAERELYDP----AAIRRQLAELQLALEMGEISEEEFDRR 57 (80)
T ss_pred HHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 999999999986588----999999999999988599988999989
No 13
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO , . The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain . The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 . ; GO: 0003700 transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2h7b_A 2pp4_A 2p6v_A.
Probab=20.01 E-value=24 Score=14.37 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=24.6
Q ss_pred CCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 0002235422003688998746997789999998
Q T0553 29 ERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGL 62 (141)
Q Consensus 29 ~~~~~~~~~~~r~~~lESqlr~g~IsVReFVr~L 62 (141)
+.+..+....++...+--.|-+|.|++-||...|
T Consensus 17 ~~~~~~pev~~~Vr~LV~~L~~~~i~~EeF~~~L 50 (96)
T PF07531_consen 17 SSNPQSPEVGERVRELVQGLVNGKIEAEEFTSRL 50 (96)
T ss_dssp HT--S-CHHHHHHHHHHHHHCTSSS-HHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 8656871788999999999982788899999999
Done!