Query T0553 NsR123E , , 141 residues
Match_columns 141
No_of_seqs 113 out of 300
Neff 4.5
Searched_HMMs 15564
Date Fri May 21 18:04:32 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0553.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0553.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1np3a1 a.100.1.2 (A:183-327) 44.0 7.3 0.00047 18.3 2.3 65 62-127 4-76 (145)
2 d1ucva_ a.60.1.2 (A:) Ephrin t 34.8 11 0.00069 17.2 2.0 29 49-78 4-32 (81)
3 d1snla_ a.39.1.7 (A:) Nucleobi 30.6 19 0.0012 15.7 2.7 17 49-65 81-97 (99)
4 d1oqpa_ a.39.1.5 (A:) Caltract 27.9 7.5 0.00049 18.2 0.3 20 49-68 58-77 (77)
5 d1tiza_ a.39.1.5 (A:) Calmodul 23.5 27 0.0017 14.8 3.6 37 49-111 14-50 (67)
6 d1ksoa_ a.39.1.2 (A:) Calcycli 22.6 28 0.0018 14.7 3.6 74 2-76 13-92 (93)
7 d1brwa1 a.46.2.1 (A:1-70) Pyri 21.4 22 0.0014 15.3 1.7 30 95-124 33-67 (70)
8 d1wp1a_ f.5.1.1 (A:) Outer mem 20.5 31 0.002 14.4 3.5 56 40-95 188-243 (456)
9 d2jf2a1 b.81.1.1 (A:1-262) UDP 19.2 33 0.0021 14.3 4.0 50 12-66 208-257 (262)
10 d1auib_ a.39.1.5 (B:) Calcineu 19.0 25 0.0016 15.0 1.5 55 46-107 58-114 (165)
No 1
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=43.99 E-value=7.3 Score=18.30 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=45.7
Q ss_pred HHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCH--------HHHHHHHHHHHHCCCHHHHHHHCCCHHHHH
Q ss_conf 851478887226678716788887655407799998--------899999999872581456775338578885
Q T0553 62 LGYSNLYLKEFYTPYPNTKVIELGTKHFLGRAPIDQ--------AEIRKYNQILATQGIRAFINALVNSQEYNE 127 (141)
Q Consensus 62 LakS~~yr~~f~~~~~~~r~IEl~~khlLGR~p~~~--------~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~ 127 (141)
-.+||+|-.+-.=+-.....|+.+|.+|.--. +.+ .|+---.++++++|+..+..++-|+.||-.
T Consensus 4 E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G-~~pe~Ay~e~~he~~lI~~li~~~Gl~~m~~~iSdTAeyG~ 76 (145)
T d1np3a1 4 ETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGE 76 (145)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 01223110289997799999999999999839-86999999999701136899999739999998530888999
No 2
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.83 E-value=11 Score=17.23 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=23.0
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 469977899999985147888722667871
Q T0553 49 GNGEITVKEFIEGLGYSNLYLKEFYTPYPN 78 (141)
Q Consensus 49 r~g~IsVReFVr~LakS~~yr~~f~~~~~~ 78 (141)
.+|.+||.|+.+.|..++ |...|-+....
T Consensus 4 ~~~~~sV~~WL~~lgL~q-Y~~~F~~~gi~ 32 (81)
T d1ucva_ 4 GSSGLTVGDWLDSIRMGR-YRDHFAAGGYS 32 (81)
T ss_dssp CCCCSBHHHHHHHTTCGG-GHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHHCCCC
T ss_conf 999872999998886499-99999995996
No 3
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.64 E-value=19 Score=15.70 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=12.6
Q ss_pred HCCCCCHHHHHHHHHCC
Q ss_conf 46997789999998514
Q T0553 49 GNGEITVKEFIEGLGYS 65 (141)
Q Consensus 49 r~g~IsVReFVr~LakS 65 (141)
.+|.||..||++++.+-
T Consensus 81 ~DG~Is~~EF~~~~~~~ 97 (99)
T d1snla_ 81 QDRLVTLEEFLASTQRK 97 (99)
T ss_dssp CSSEEEHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHCC
T ss_conf 99969299999998437
No 4
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=27.89 E-value=7.5 Score=18.19 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=13.3
Q ss_pred HCCCCCHHHHHHHHHCCHHH
Q ss_conf 46997789999998514788
Q T0553 49 GNGEITVKEFIEGLGYSNLY 68 (141)
Q Consensus 49 r~g~IsVReFVr~LakS~~y 68 (141)
.+|.|+-.||++-+.++.+|
T Consensus 58 ~~G~I~~~EF~~~m~k~~~~ 77 (77)
T d1oqpa_ 58 DDNEIDEDEFIRIMKKTSLF 77 (77)
T ss_dssp SSSEECHHHHHHHHHHTTCC
T ss_pred CCCCEEHHHHHHHHHCCCCC
T ss_conf 88939199999999704789
No 5
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.49 E-value=27 Score=14.81 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=23.7
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 469977899999985147888722667871678888765540779999889999999987258
Q T0553 49 GNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGRAPIDQAEIRKYNQILATQG 111 (141)
Q Consensus 49 r~g~IsVReFVr~LakS~~yr~~f~~~~~~~r~IEl~~khlLGR~p~~~~Ei~~~~~i~a~~G 111 (141)
.+|.|+..||...+.. ||..+ ++.|+..++..+...|
T Consensus 14 ~~G~I~~~El~~~l~~-------------------------lg~~~-~~~~i~~~~~~~D~d~ 50 (67)
T d1tiza_ 14 KDGKLSLDEFREVALA-------------------------FSPYF-TQEDIVKFFEEIDVDG 50 (67)
T ss_dssp SSSCEEHHHHHHHHHH-------------------------TCTTS-CHHHHHHHHHHHCCSS
T ss_pred CCCCCCHHHHHHHHHH-------------------------HCCCC-CHHHHHHHHHHHCCCC
T ss_conf 8392869999999997-------------------------43365-5489999999857998
No 6
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=22.56 E-value=28 Score=14.70 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=42.0
Q ss_pred CHHHHHCC------CCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 13320079------999889999999998888300022354220036889987469977899999985147888722667
Q T0553 2 KVFKRVAG------IKDKAAIKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTP 75 (141)
Q Consensus 2 kvf~r~~~------~~d~~~l~~vI~AaYrQVf~~~~~~~~~~~r~~~lESqlr~g~IsVReFVr~LakS~~yr~~f~~~ 75 (141)
.||++.+. .-+..++..++++-....+++... ...-.++...--.=.+|.|+-.||+.-+++--.--..|+..
T Consensus 13 ~vF~kya~~dGd~~~ls~~Elk~ll~~~~~~~~~~~~~-~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~~l~~~~h~~~~~ 91 (93)
T d1ksoa_ 13 CTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFR-ECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCHEYFKD 91 (93)
T ss_dssp HHHHHHHTSSSCTTCEEHHHHHHHHHHHTTTCCCCTTC-HHHHHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHCCCCCCCCEECHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999837589989687999999999864402456899-99999999997579999796999999999999999999742
Q ss_pred C
Q ss_conf 8
Q T0553 76 Y 76 (141)
Q Consensus 76 ~ 76 (141)
+
T Consensus 92 ~ 92 (93)
T d1ksoa_ 92 C 92 (93)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 7
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} SCOP: d2tpta1 d1uoua1
Probab=21.40 E-value=22 Score=15.29 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHCC-----CHHHHHHHCCCHH
Q ss_conf 99889999999987258-----1456775338578
Q T0553 95 IDQAEIRKYNQILATQG-----IRAFINALVNSQE 124 (141)
Q Consensus 95 ~~~~Ei~~~~~i~a~~G-----~~a~Id~lidS~E 124 (141)
.+..++.+|...+..+| ..++.+++++|.|
T Consensus 33 ~sd~qi~afL~al~~kG~t~eEi~~~~~am~~sg~ 67 (70)
T d1brwa1 33 IPDYQMSALAMAIYFRGMTEEETAALTMAMVQSGE 67 (70)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99888999999986079989889999999988231
No 8
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.51 E-value=31 Score=14.43 Aligned_cols=56 Identities=7% Similarity=-0.115 Sum_probs=36.5
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 03688998746997789999998514788872266787167888876554077999
Q T0553 40 EFSGWESKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFLGRAPI 95 (141)
Q Consensus 40 r~~~lESqlr~g~IsVReFVr~LakS~~yr~~f~~~~~~~r~IEl~~khlLGR~p~ 95 (141)
.+...+.++..|.++--|..+.-+.=..-+...-..-...+.....++.++|.++.
T Consensus 188 ~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~~~~ 243 (456)
T d1wp1a_ 188 SFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGSGIP 243 (456)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999888637852010004788999999889999999999999999998289975
No 9
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} SCOP: d1j2za_
Probab=19.24 E-value=33 Score=14.27 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 9889999999998888300022354220036889987469977899999985147
Q T0553 12 DKAAIKTLISAAYRQIFERDIAPYIAQNEFSGWESKLGNGEITVKEFIEGLGYSN 66 (141)
Q Consensus 12 d~~~l~~vI~AaYrQVf~~~~~~~~~~~r~~~lESqlr~g~IsVReFVr~LakS~ 66 (141)
+++++ ..|+.+||.+|.... .-.+.+..+|.+..+.. .|++|+.-+..|+
T Consensus 208 ~~~~i-~~l~~~~k~lf~~~~---~~~~~~~~~~~~~~~~~-~v~~~~~fi~~s~ 257 (262)
T d2jf2a1 208 SREAI-TAIRNAYKLIYRSGK---TLDEVKPEIAELAETYP-EVKAFTDFFARST 257 (262)
T ss_dssp CHHHH-HHHHHHHHHHHTSCC---CHHHHHHHHHHHHTTCG-GGHHHHHHHHHCC
T ss_pred CHHHH-HHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCCH-HHHHHHHHHHCCC
T ss_conf 98999-999999999972699---78999999998522567-7999999985378
No 10
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.04 E-value=25 Score=14.96 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=34.0
Q ss_pred HHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHC--CCCCCCHHHHHHHHHHH
Q ss_conf 987469977899999985147888722667871678888765540--77999988999999998
Q T0553 46 SKLGNGEITVKEFIEGLGYSNLYLKEFYTPYPNTKVIELGTKHFL--GRAPIDQAEIRKYNQIL 107 (141)
Q Consensus 46 Sqlr~g~IsVReFVr~LakS~~yr~~f~~~~~~~r~IEl~~khlL--GR~p~~~~Ei~~~~~i~ 107 (141)
..=.+|.|+-.||++.++.-. ........+...|+.+= |-...+..|+.......
T Consensus 58 d~~~~g~i~~~EFl~~~~~~~-------~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~ 114 (165)
T d1auib_ 58 DTDGNGEVDFKEFIEGVSQFS-------VKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM 114 (165)
T ss_dssp CTTCSSSEEHHHHHHHHGGGC-------TTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 323101244666632100122-------100257899999987502432223289999999975
Done!