Query T0554 TeR219A , , 135 residues
Match_columns 135
No_of_seqs 113 out of 292
Neff 4.6
Searched_HMMs 22458
Date Fri May 21 18:04:43 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0554.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0554.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j2z_A Acyl-[acyl-carrier-prot 54.9 4.1 0.00018 21.0 1.7 55 5-62 198-252 (270)
2 1snl_A Nucleobindin 1, calnuc; 52.7 6.3 0.00028 19.8 2.3 53 10-62 38-102 (103)
3 2d8n_A Recoverin; structural g 48.4 10 0.00047 18.4 2.9 54 45-106 84-139 (207)
4 2zc2_A DNAD-like replication p 32.2 27 0.0012 15.8 4.3 31 80-111 8-38 (78)
5 3i6v_A Periplasmic His/Glu/Gln 29.4 14 0.00061 17.6 1.0 28 108-135 195-226 (232)
6 2bec_A Calcineurin B homologou 26.1 16 0.0007 17.2 0.8 17 45-61 74-90 (202)
7 3ebq_A Molecule: pppde1 (permu 25.7 35 0.0015 15.0 3.7 66 51-120 86-154 (170)
8 3hsq_A Acyl-[acyl-carrier-prot 25.6 31 0.0014 15.3 2.3 52 8-62 201-252 (259)
9 2ehb_A Calcineurin B-like prot 25.5 29 0.0013 15.5 2.1 50 45-101 87-138 (207)
10 1ucv_A Ephrin type-A receptor 24.7 30 0.0013 15.5 2.0 29 45-74 4-32 (81)
11 2zan_A Vacuolar protein sortin 24.6 36 0.0016 14.9 4.2 23 69-91 297-319 (444)
12 1n00_A Annexin GH1; membrane-b 24.4 37 0.0016 14.9 6.3 105 9-130 118-222 (321)
13 2ggm_A Centrin-2; EF-hand supe 24.1 19 0.00087 16.6 1.0 18 43-60 78-95 (172)
14 2k7c_A CABP1, calbrain, calciu 23.3 38 0.0017 14.7 2.7 15 45-59 57-71 (72)
15 2o36_A ThiMet oligopeptidase; 23.1 39 0.0017 14.7 2.9 34 60-94 622-655 (674)
16 1pva_A Parvalbumin; calcium bi 23.0 32 0.0014 15.2 1.9 47 45-101 21-69 (110)
17 1or7_C Sigma-E factor negative 22.1 36 0.0016 14.9 2.0 41 40-84 5-45 (90)
18 2qia_A UDP-N-acetylglucosamine 21.3 42 0.0019 14.5 2.8 53 7-62 205-257 (262)
19 2ppw_A Conserved domain protei 20.3 44 0.002 14.4 2.3 36 52-88 181-216 (216)
20 1np3_A Ketol-acid reductoisome 20.3 44 0.002 14.3 2.9 64 59-123 187-258 (338)
No 1
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=54.88 E-value=4.1 Score=20.99 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 4898898889999999989883034322223304688887458977899999985137
Q T0554 5 LRANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE 62 (135)
Q Consensus 5 l~~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~ 62 (135)
||..++.+++. .++.+||.+|-. ...-.+.+..++.++.+.. -+++|+.-+.+|+
T Consensus 198 lr~~~~~~~i~-~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~s~ 252 (270)
T 1j2z_A 198 MRQLLESKDID-FIYALYKRLFRP-IPSLRESAKLELEEHANNP-FVKEICSFILESS 252 (270)
T ss_dssp HHHHSCHHHHH-HHHHHHHHHTCS-SSCHHHHHHHHHHHTSSCH-HHHHHHHHHHHCS
T ss_pred HHCCCCHHHHH-HHHHHHHHHHHC-CCCHHHHHHHHHHHCCCCH-HHHHHHHHHHHCC
T ss_conf 76478888999-999999999856-8769999999987737998-9999999997189
No 2
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=52.67 E-value=6.3 Score=19.83 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCC------CCCHHHHHHHH------CCCCCHHHHHHHHHCCH
Q ss_conf 9888999999998988303432222------33046888874------58977899999985137
Q T0554 10 SEEDLETVIRAVYRQVLGNDYVMAS------ERLVSAESLLR------NGKITVREFVRAVAKSE 62 (135)
Q Consensus 10 s~~~~~~vI~AaYrQVf~n~~~~~~------erl~~~ES~lr------ng~IsVreFVr~lakS~ 62 (135)
+.+++..++++...++......... .....++..++ +|.||..||++++.+-+
T Consensus 38 ~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~DG~Is~eEF~~~~~~~e 102 (103)
T 1snl_A 38 DEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKE 102 (103)
T ss_dssp EHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 79999999999887523011131102354767999999999981899998194999999873369
No 3
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=48.43 E-value=10 Score=18.39 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=28.1
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHC
Q ss_conf 45897789999998513788761035686057999999887--189998988999999998716
Q T0554 45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHL--LGRAPYDESEVIFHLDLYENE 106 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~a~~ 106 (135)
.+|.|+.+||+.++... .......-++.+|+.+ =|..-.+..|+..........
T Consensus 84 ~~g~I~f~EFl~~~~~~--------~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~ 139 (207)
T 2d8n_A 84 LDGTLDFKEYVIALHMT--------TAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKM 139 (207)
T ss_dssp CCSEEEHHHHHHHHHHH--------SCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHHHH--------CCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHH
T ss_conf 99816412565554330--------256537689999997610899817199999999998652
No 4
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=32.19 E-value=27 Score=15.75 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=22.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99988718999898899999999871682467
Q T0554 80 LNYKHLLGRAPYDESEVIFHLDLYENEGFDAD 111 (135)
Q Consensus 80 l~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~ 111 (135)
-.|.+.+||++ ++.|+..-...+..-|++..
T Consensus 8 ~~~e~~fGr~l-s~~e~e~i~~w~~~~~~~~e 38 (78)
T 2zc2_A 8 EDFERELGRML-SPFELEDLQKTVSDDKTDPD 38 (78)
T ss_dssp HHHHHHHTSCC-CHHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHCCCC-CHHHHHHHHHHHHHHCCCHH
T ss_conf 99999877999-99999999999988299999
No 5
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Probab=29.36 E-value=14 Score=17.64 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=20.7
Q ss_pred CHHHHHHHCCCHHHH----HHCCCCCCCCCCC
Q ss_conf 246778633847888----5078846777689
Q T0554 108 FDADIDSYIDSPEYT----NSFGDWVVPYYRG 135 (135)
Q Consensus 108 ~~a~Id~lidS~EY~----~~FG~~~VPY~RG 135 (135)
++..|+.|..|.||. +.||.|..||.-|
T Consensus 195 in~~l~~l~~~G~~~~I~~ky~g~d~~~~~~~ 226 (232)
T 3i6v_A 195 FDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHCTTSCCCC--
T ss_pred HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999969199999998779985647887
No 6
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=26.08 E-value=16 Score=17.25 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=13.5
Q ss_pred HCCCCCHHHHHHHHHCC
Q ss_conf 45897789999998513
Q T0554 45 RNGKITVREFVRAVAKS 61 (135)
Q Consensus 45 rng~IsVreFVr~lakS 61 (135)
.+|.|+..||++.++..
T Consensus 74 ~~g~I~~~eF~~~~~~~ 90 (202)
T 2bec_A 74 GSQRVDFPGFVRVLAHF 90 (202)
T ss_dssp SCCCCCHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 78875499999999886
No 7
>3ebq_A Molecule: pppde1 (permuted papain fold peptidases of dsRNA viruses and eukaryotes...; structural genomics, structural genomics consortium; 1.90A {Homo sapiens}
Probab=25.74 E-value=35 Score=15.04 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCHHHHHH---CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHH
Q ss_conf 89999998513788761---03568605799999988718999898899999999871682467786338478
Q T0554 51 VREFVRAVAKSELYKEK---FLYGNFQTRVIELNYKHLLGRAPYDESEVIFHLDLYENEGFDADIDSYIDSPE 120 (135)
Q Consensus 51 VreFVr~lakS~~yr~~---f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~E 120 (135)
+++|++.++. +.|.-. .+..|.|. |-+...+.|+|+.. ++.|..--......-+..++-.+++|.+
T Consensus 86 ~~~~l~~l~~-~~f~g~~Y~Ll~~NCNh-Fs~~l~~~L~gk~I--P~~I~rl~~~~l~tp~g~~l~p~l~~~~ 154 (170)
T 3ebq_A 86 FLEYLSSLGE-SLFRGEAYNLFEHNCNT-FSNEVAQFLTGRKI--PSYITDLPSEVLSTPFGQALRPLLDSIQ 154 (170)
T ss_dssp HHHHHHHHHT-TTCCGGGCBTTTBCHHH-HHHHHHHHHHSCCC--CHHHHTHHHHHHTSHHHHHHTTTC----
T ss_pred HHHHHHHHHH-CCCCCCCCCCCCCCCCH-HHHHHHHHHCCCCC--CHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9999999756-34578764402104432-68999999729997--4899998898835817888887765522
No 8
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A*
Probab=25.61 E-value=31 Score=15.33 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 8898889999999989883034322223304688887458977899999985137
Q T0554 8 NWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE 62 (135)
Q Consensus 8 ~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~ 62 (135)
..+ .+.-..|+.+||.+|-. -.--++++..+|.+.... -.+++|+.-+.+|+
T Consensus 201 ~~~-~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~s~ 252 (259)
T 3hsq_A 201 GFS-PEVRNAIKHAYKVIYHS-GISTRKALDELEASGNLI-EQVKYIIKFFRDSD 252 (259)
T ss_dssp TCC-HHHHHHHHHHHHHHHSS-SSCHHHHHHHHHTTCCCC-HHHHHHHHHHHHCS
T ss_pred CCC-HHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCC-HHHHHHHHHHHCCC
T ss_conf 999-99999999999999717-998999999998635798-99999999997188
No 9
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4), SOS2 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=25.51 E-value=29 Score=15.51 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=25.3
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHH
Q ss_conf 458977899999985137887610356860579999998871--899989889999999
Q T0554 45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLL--GRAPYDESEVIFHLD 101 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khlL--GR~p~~~~Ei~~~~~ 101 (135)
.+|.|+..||+.++.. +.........++.+|+.+= |-.-.+..|+.....
T Consensus 87 ~dG~I~f~EF~~~l~~-------~~~~~~~~e~~~~~F~~~D~d~~G~Is~~El~~~l~ 138 (207)
T 2ehb_A 87 RNGVIEFGEFVRSLGV-------FHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVV 138 (207)
T ss_dssp CSSEECHHHHHHHHGG-------GSTTSCHHHHHHHHHHHHCTTCCSSEEHHHHHHHHH
T ss_pred CCCCEEHHHHHHHHHH-------HHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9983829999988886-------401478899999988606757999835999999999
No 10
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=24.72 E-value=30 Score=15.48 Aligned_cols=29 Identities=17% Similarity=0.546 Sum_probs=22.0
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCH
Q ss_conf 458977899999985137887610356860
Q T0554 45 RNGKITVREFVRAVAKSELYKEKFLYGNFQ 74 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~yr~~f~~~~~~ 74 (135)
.++.+||.++.+++..++ |...|-.....
T Consensus 4 ~~~~~sV~~WL~~lgL~~-Y~~~F~~~gi~ 32 (81)
T 1ucv_A 4 GSSGLTVGDWLDSIRMGR-YRDHFAAGGYS 32 (81)
T ss_dssp CCCCSBHHHHHHHTTCGG-GHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHHHCCC
T ss_conf 999870999998886099-99999980978
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=24.62 E-value=36 Score=14.91 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=9.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 35686057999999887189998
Q T0554 69 LYGNFQTRVIELNYKHLLGRAPY 91 (135)
Q Consensus 69 ~~~~~~~r~iEl~~khlLGR~p~ 91 (135)
+-+.|+...-...++++|+..+.
T Consensus 297 ~i~~Pd~~~R~~Il~~~l~~~~~ 319 (444)
T 2zan_A 297 YIPLPEAHARAAMFRLHLGSTQN 319 (444)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCE
T ss_pred HCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 21688868999999999831899
No 12
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=24.44 E-value=37 Score=14.88 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 89888999999998988303432222330468888745897789999998513788761035686057999999887189
Q T0554 9 WSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLLGR 88 (135)
Q Consensus 9 ~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khlLGR 88 (135)
.|.+++.. |+++|++.|++.. +.. +.+.+ .|+ .+.++-++.+...+-....+..-...-++..++..=|+
T Consensus 118 rs~~e~~~-ik~aY~~~y~~~L--~~d----i~~e~-sg~--~~~lll~ll~~~R~e~~~vd~~~a~~da~~L~~a~~~~ 187 (321)
T 1n00_A 118 RSANQLLH-ARQAYHARYKKSL--EED----VAHHT-TGD--FHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNK 187 (321)
T ss_dssp SCHHHHHH-HHHHHHHHHSSCH--HHH----HHHHC-CHH--HHHHHHHHHHCCCCCSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHH-HHHHHHHHHHHHH--HHH----HHHCC-CHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98699999-9999999980769--999----98536-688--99999999845876799769899888999999986167
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCCC
Q ss_conf 998988999999998716824677863384788850788467
Q T0554 89 APYDESEVIFHLDLYENEGFDADIDSYIDSPEYTNSFGDWVV 130 (135)
Q Consensus 89 ~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG~~~V 130 (135)
.+.+. .++.|++++-..-+- ++. .+|...+|.+..
T Consensus 188 ~~~~~----~~i~Il~~rs~~hL~-~i~--~~Y~~~~g~~L~ 222 (321)
T 1n00_A 188 AYSDD----DVIRVLATRSKAQIN-ATL--NHYKNEYGNDIN 222 (321)
T ss_dssp CTTCH----HHHHHHHHSCHHHHH-HHH--HHHHHHHSSCTT
T ss_pred CCCHH----HHHHHHHHCCHHHHH-HHH--HHHHHHCCCCHH
T ss_conf 88789----999999858999999-999--999986184499
No 13
>2ggm_A Centrin-2; EF-hand superfamily, DNA repair complex, cell cycle; 2.35A {Homo sapiens} SCOP: a.39.1.5 PDB: 1zmz_A 2ami_A
Probab=24.10 E-value=19 Score=16.65 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=13.6
Q ss_pred HHHCCCCCHHHHHHHHHC
Q ss_conf 874589778999999851
Q T0554 43 LLRNGKITVREFVRAVAK 60 (135)
Q Consensus 43 ~lrng~IsVreFVr~lak 60 (135)
.-.+|.|+..+|+..+..
T Consensus 78 ~~~~~~I~~~eF~~~~~~ 95 (172)
T 2ggm_A 78 KEGTGKMNFGDFLTVMTQ 95 (172)
T ss_dssp TTCCSEEEHHHHHHHHHH
T ss_pred CCCCCEEECHHHHHHHHH
T ss_conf 678973500789999999
No 14
>2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A
Probab=23.30 E-value=38 Score=14.74 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=7.1
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 458977899999985
Q T0554 45 RNGKITVREFVRAVA 59 (135)
Q Consensus 45 rng~IsVreFVr~la 59 (135)
++|.|+..||+..+.
T Consensus 57 ~dG~I~~~EF~~~m~ 71 (72)
T 2k7c_A 57 GDGRVDFEEFVRMMS 71 (72)
T ss_dssp SSCCEEHHHHHHHHH
T ss_pred CCCEEEHHHHHHHHC
T ss_conf 998384999999976
No 15
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Probab=23.07 E-value=39 Score=14.72 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=20.8
Q ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 13788761035686057999999887189998988
Q T0554 60 KSELYKEKFLYGNFQTRVIELNYKHLLGRAPYDES 94 (135)
Q Consensus 60 kS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~ 94 (135)
..+.||+.++.+-. .+--.-.++.||||+|...+
T Consensus 622 ~G~~~r~~iL~~Gg-s~~~~e~~~~f~Gr~p~~~a 655 (674)
T 2o36_A 622 VGMDYRSCILRPGG-SEDASAMLRRFLGRDPKQDA 655 (674)
T ss_dssp HHHHHHHHTTTTGG-GSCHHHHHHHHHSSCCCSHH
T ss_pred HHHHHHHHHHCCCC-CCCHHHHHHHHCCCCCCHHH
T ss_conf 99999999703679-81899999982599998169
No 16
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=22.99 E-value=32 Score=15.22 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=25.1
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHH
Q ss_conf 458977899999985137887610356860579999998871--899989889999999
Q T0554 45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLL--GRAPYDESEVIFHLD 101 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khlL--GR~p~~~~Ei~~~~~ 101 (135)
.+|.|+.+||+..++.+.. +..-.+.+|+++= |....+..|+...+.
T Consensus 21 ~dg~idf~eF~~~~~~~~~----------~~~~~~~~F~~~D~d~~G~I~~~El~~~l~ 69 (110)
T 1pva_A 21 AEGSFNHKKFFALVGLKAM----------SANDVKKVFKAIDADASGFIEEEELKFVLK 69 (110)
T ss_dssp STTCCCHHHHHHHHTCTTS----------CHHHHHHHHHHHCTTCSSSBCHHHHHTGGG
T ss_pred CCCCCCHHHHHHHHHHHCC----------CHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9998879999999986149----------999999999985889989488999999998
No 17
>1or7_C Sigma-E factor negative regulatory protein, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.180.1.1
Probab=22.10 E-value=36 Score=14.94 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=31.0
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 888874589778999999851378876103568605799999988
Q T0554 40 AESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKH 84 (135)
Q Consensus 40 ~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~kh 84 (135)
.=|-|-+|+++=-|+++.|.+++.-++. |.. |..|--..+.
T Consensus 5 ~lSAL~DGEl~~~el~~~l~~d~e~~~~-W~~---YhlI~d~lr~ 45 (90)
T 1or7_C 5 QLSALMDGETLDSELLNELAHNPEMQKT-WES---YHLIRDSMRG 45 (90)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTCHHHHHH-HHH---HHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHH-HHH---HHHHHHHHHC
T ss_conf 9999993898749999998759999999-999---9999999966
No 18
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=21.27 E-value=42 Score=14.49 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 98898889999999989883034322223304688887458977899999985137
Q T0554 7 ANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE 62 (135)
Q Consensus 7 ~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~ 62 (135)
..++ .+.-..++.+||++|-.. .--.+.+..++.+..+.. .+++|+.-+..|.
T Consensus 205 ~~~~-~~~i~~~~~~~~~l~~~~-~~~~~~~~~l~~~~~~~~-~i~~~~~Fi~~s~ 257 (262)
T 2qia_A 205 RGFS-REAITAIRNAYKLIYRSG-KTLDEVKPEIAELAETYP-EVKAFTDFFARST 257 (262)
T ss_dssp TTCC-HHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHTTCG-GGHHHHHHHHHCC
T ss_pred CCCC-HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCH-HHHHHHHHHHHCC
T ss_conf 4799-999999999999997659-989999999986513889-9999999997488
No 19
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein structure initiative, MCSG, structural genomics; HET: MSE; 2.01A {Streptococcus pneumoniae TIGR4}
Probab=20.31 E-value=44 Score=14.36 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=26.0
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999998513788761035686057999999887189
Q T0554 52 REFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLLGR 88 (135)
Q Consensus 52 reFVr~lakS~~yr~~f~~~~~~~r~iEl~~khlLGR 88 (135)
+|++++...++-|++-||..+-+. .|.--.|-+||+
T Consensus 181 ~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~ 216 (216)
T 2ppw_A 181 QDFLKDTISGKYFQEYFFENCQDD-EVAAYLKEVLAK 216 (216)
T ss_dssp HHHHHHHSCSHHHHHHHHHHCCCH-HHHHHHHC----
T ss_pred HHHHHHHHCCHHHHHHHHHHCCHH-HHHHHHHHHHCC
T ss_conf 999998864445899999818808-999999998549
No 20
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain, oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=20.25 E-value=44 Score=14.35 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=46.2
Q ss_pred HCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHCCCHHHHHHHCCCHHHHH
Q ss_conf 513788761035686057999999887189998988--------99999999871682467786338478885
Q T0554 59 AKSELYKEKFLYGNFQTRVIELNYKHLLGRAPYDES--------EVIFHLDLYENEGFDADIDSYIDSPEYTN 123 (135)
Q Consensus 59 akS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~--------Ei~~~~~i~a~~G~~a~Id~lidS~EY~~ 123 (135)
..||||-.+-.=+--..-.|+.+|..|.=.. +.++ |+---.+++.++|+.++-+++=|..||-.
T Consensus 187 tesDLfGEQ~vLcGg~~~li~~~FEtLVEaG-y~PE~AYfE~lhElklIvdLI~~~Gi~~M~~~iSdTAeyG~ 258 (338)
T 1np3_A 187 TETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGE 258 (338)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHH
T ss_conf 6311132016765299999999999999859-98788899999866668999996268999986072776647
Done!