Query T0554 TeR219A , , 135 residues
Match_columns 135
No_of_seqs 113 out of 292
Neff 4.6
Searched_HMMs 11830
Date Fri May 21 18:07:04 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0554.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0554.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00427 PBS_linker_poly: Phyc 100.0 0 0 385.1 14.3 131 5-135 1-131 (131)
2 PF07583 PSCyt2: Protein of un 93.6 0.026 2.2E-06 33.4 3.6 55 72-127 22-76 (208)
3 PF07587 PSD1: Protein of unkn 69.8 3.3 0.00028 19.8 4.8 90 15-106 20-124 (266)
4 PF07624 PSD2: Protein of unkn 66.2 3.5 0.00029 19.7 4.3 29 37-65 48-76 (76)
5 PF10216 ChpXY: CO2 hydration 60.7 4.1 0.00035 19.2 3.9 89 4-124 10-108 (353)
6 PF01450 IlvC: Acetohydroxy ac 42.0 5.1 0.00043 18.6 1.9 63 59-123 5-76 (145)
7 PF09824 ArsR: ArsR transcript 37.0 12 0.001 16.2 3.2 31 37-67 110-140 (160)
8 PF05598 DUF772: Transposase d 32.3 14 0.0012 15.8 4.3 29 81-109 37-69 (77)
9 PF06464 DMAP_binding: DMAP1-b 26.8 13 0.0011 15.9 2.0 25 34-58 10-34 (111)
10 PF12408 DUF3666: Ribose-5-pho 21.8 22 0.0018 14.6 2.9 25 52-76 16-40 (48)
No 1
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 The phycobilisome linker polypeptide determines the state of aggregation and the location of the disc-shaped phycobiliprotein units within the phycobilisome and modulates their spectroscopic properties in order to mediate a directed and optimal energy transfer. The phycobilisome is a hemidiscoidal structure that is composed of two distinct substructures, a core complex (that contains the phycobiliproteins) and a number of rods radiating from the core. The linker polypeptide is also found in the chloroplast of some eukaryotes where it is required for attachment of phycocyanin to allophycocyanin in the core of the phycobilisome.; GO: 0015979 photosynthesis, 0030089 phycobilisome
Probab=100.00 E-value=0 Score=385.08 Aligned_cols=131 Identities=56% Similarity=0.865 Sum_probs=130.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 48988988899999999898830343222233046888874589778999999851378876103568605799999988
Q T0554 5 LRANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKH 84 (135)
Q Consensus 5 l~~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~kh 84 (135)
|||+.|+++++.||+|||||||||+++|+++|++++|||||||+||||||||+||||++||++||++++|+|+||++|||
T Consensus 1 ~~~~~s~~~~~~vI~AaYrQVfgn~~~~~~eRl~~~ES~Lrng~IsvreFVr~La~S~~yr~~f~~~~~~~R~iEl~~kh 80 (131)
T PF00427_consen 1 MRPNASESELEEVIRAAYRQVFGNDHPMESERLTSLESQLRNGDISVREFVRGLAKSDLYRKRFFEPNSNYRAIELAFKH 80 (131)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999999999999965753145430204999988699829999999975699999870266601899999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCCCCCCCC
Q ss_conf 718999898899999999871682467786338478885078846777689
Q T0554 85 LLGRAPYDESEVIFHLDLYENEGFDADIDSYIDSPEYTNSFGDWVVPYYRG 135 (135)
Q Consensus 85 lLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG~~~VPY~RG 135 (135)
||||||+|++|+++|++|++++|++|+||+||||+||.++||+|||||+||
T Consensus 81 lLGR~~~~~~Ei~~~~~i~a~~G~~a~Id~lldS~EY~~~FG~d~VPy~R~ 131 (131)
T PF00427_consen 81 LLGRAPYNQAEISAYSIILAEQGFEAFIDSLLDSDEYLENFGEDTVPYQRG 131 (131)
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHCCCCCCCCCCC
T ss_conf 728899999999999999992380999999968799998759988997889
No 2
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 This domain is found in a family of paralogues in the planctomycetes. The function is not known. It is found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=93.60 E-value=0.026 Score=33.42 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCC
Q ss_conf 86057999999887189998988999999998716824677863384788850788
Q T0554 72 NFQTRVIELNYKHLLGRAPYDESEVIFHLDLYENEGFDADIDSYIDSPEYTNSFGD 127 (135)
Q Consensus 72 ~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG~ 127 (135)
...-.++-=.+--|.|++| +.+|+.++..--+..-++.+||.|+.|.+|.+.++.
T Consensus 22 add~t~lRRv~lDL~Gl~P-t~eEv~~Fl~d~s~~~~~~lVD~LLasp~y~e~wa~ 76 (208)
T PF07583_consen 22 ADDETFLRRVYLDLTGLPP-TPEEVRAFLADQSPDKREKLVDRLLASPHYGERWAR 76 (208)
T ss_pred CCHHHHHHHHHHHHHCCCC-CHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 8899999999999807995-999999998579857999999999778089999999
No 3
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR011444 This domain is found in a family of paralogues in the planctomycetes. The function is not known. It is found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=69.76 E-value=3.3 Score=19.80 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHCCCCCC-----C--------CCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999989883034322-----2--------233046888874589778999999851378876103568605799999
Q T0554 15 ETVIRAVYRQVLGNDYVM-----A--------SERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELN 81 (135)
Q Consensus 15 ~~vI~AaYrQVf~n~~~~-----~--------~erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~ 81 (135)
..+++-...+.||+.++. . .|-|..+...|....-++|.++|.|+.|+.|++.=-....+ ..+ --
T Consensus 20 RviVNRvW~~~fGrGiV~pvdDfg~~g~~PshPeLLD~La~~F~~~g~dlK~L~R~I~~S~tYq~sS~~~~~~-~~~-dp 97 (266)
T PF07587_consen 20 RVIVNRVWQHLFGRGIVEPVDDFGSQGNPPSHPELLDWLAQEFVDHGWDLKRLIRLIVLSRTYQQSSQPNEEN-LEI-DP 97 (266)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCHH-HCC-CC
T ss_conf 9999999999809867389655558899999989999999999986999999999998559884868688022-046-97
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHHC
Q ss_conf 98871899989--88999999998716
Q T0554 82 YKHLLGRAPYD--ESEVIFHLDLYENE 106 (135)
Q Consensus 82 ~khlLGR~p~~--~~Ei~~~~~i~a~~ 106 (135)
-.+++.|++-- .+|...-+.+.++.
T Consensus 98 ~n~~~~~~~~rRL~AE~irDsil~~sg 124 (266)
T PF07587_consen 98 DNRLFARFPRRRLSAEQIRDSILQASG 124 (266)
T ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 553125799928899999999999987
No 4
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C-terminus of a family of cytochrome-like proteins in Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=66.17 E-value=3.5 Score=19.68 Aligned_cols=29 Identities=10% Similarity=0.339 Sum_probs=14.6
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCHHHH
Q ss_conf 04688887458977899999985137887
Q T0554 37 LVSAESLLRNGKITVREFVRAVAKSELYK 65 (135)
Q Consensus 37 l~~~ES~lrng~IsVreFVr~lakS~~yr 65 (135)
+..+..+++.+.-+++++|.+|..|+.||
T Consensus 48 i~~i~~~~~~~~y~~~~Li~~iV~S~~Fr 76 (76)
T PF07624_consen 48 IDAIVEAFKANGYRLRDLILAIVTSDAFR 76 (76)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 99999999886998999999997584679
No 5
>PF10216 ChpXY: CO2 hydration protein (ChpXY)
Probab=60.72 E-value=4.1 Score=19.20 Aligned_cols=89 Identities=25% Similarity=0.368 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHHHHH---------CCCCCHHHHHHHHHCCHHHHHHCCCCCC
Q ss_conf 64898898889999-9999898830343222233046888874---------5897789999998513788761035686
Q T0554 4 ELRANWSEEDLETV-IRAVYRQVLGNDYVMASERLVSAESLLR---------NGKITVREFVRAVAKSELYKEKFLYGNF 73 (135)
Q Consensus 4 el~~~~s~~~~~~v-I~AaYrQVf~n~~~~~~erl~~~ES~lr---------ng~IsVreFVr~lakS~~yr~~f~~~~~ 73 (135)
.|-|+..+.-++.| |-.+|--|+. .+..+-+--+|.||- ||++++....+-+ |.---
T Consensus 10 alL~Dtp~nlleVVgilksYgvvlD---aYsrnL~yiae~qFL~~fP~FKyF~Ge~~~~kLl~Hl----------~hDRI 76 (353)
T PF10216_consen 10 ALLPDTPDNLLEVVGILKSYGVVLD---AYSRNLLYIAERQFLNPFPFFKYFNGEISLPKLLHHL----------WHDRI 76 (353)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHH----------HHCHH
T ss_conf 6689975879999999987410299---8888899999866303225877717887889999997----------31110
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
Q ss_conf 057999999887189998988999999998716824677863384788850
Q T0554 74 QTRVIELNYKHLLGRAPYDESEVIFHLDLYENEGFDADIDSYIDSPEYTNS 124 (135)
Q Consensus 74 ~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~ 124 (135)
|+.+.|.|-|..+=-. ..| .|+++||+||.++
T Consensus 77 N~EyAEyCmkaM~WHg---------------~Gg----lDaYLDs~ef~~~ 108 (353)
T PF10216_consen 77 NFEYAEYCMKAMFWHG---------------GGG----LDAYLDSEEFKEN 108 (353)
T ss_pred HHHHHHHHHHHHHCCC---------------CCC----CCCCCCCHHHHHH
T ss_conf 1599999999875167---------------788----5521288999999
No 6
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine . The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor. ; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process; PDB: 1yrl_C 1yve_J 1qmg_C 3fr7_A 3fr8_A 1np3_A.
Probab=41.97 E-value=5.1 Score=18.62 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=43.2
Q ss_pred HCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH---------HHHHHHHCCCHHHHHHHCCCHHHHH
Q ss_conf 5137887610356860579999998871899989889999---------9999871682467786338478885
Q T0554 59 AKSELYKEKFLYGNFQTRVIELNYKHLLGRAPYDESEVIF---------HLDLYENEGFDADIDSYIDSPEYTN 123 (135)
Q Consensus 59 akS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~---------~~~i~a~~G~~a~Id~lidS~EY~~ 123 (135)
..||+|-.+-.=+-...-.|+.+|.+|. ++=++ .|++. -.++++++|+..+.+++=|.+||-.
T Consensus 5 ~~sDLfGEq~vL~Gg~~~lv~~~Fe~Lv-eaG~~-pE~Ay~e~~~e~klI~dli~~~Gi~~M~~~iS~TAeyG~ 76 (145)
T PF01450_consen 5 TESDLFGEQAVLCGGVHALVEAGFETLV-EAGYS-PEMAYFECLHETKLIVDLIYEGGIAGMYDSISDTAEYGA 76 (145)
T ss_dssp HHHHH---TTTTHHHHHHHHHHHHHHHH-H-----HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCH
T ss_conf 8876431169999899999999999999-85998-899999999999999999998769999986587987220
No 7
>PF09824 ArsR: ArsR transcriptional regulator
Probab=36.99 E-value=12 Score=16.25 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=26.3
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 0468888745897789999998513788761
Q T0554 37 LVSAESLLRNGKITVREFVRAVAKSELYKEK 67 (135)
Q Consensus 37 l~~~ES~lrng~IsVreFVr~lakS~~yr~~ 67 (135)
...+|....+|.+++-+..|.++.|..|-+-
T Consensus 110 ~~~ie~~i~~g~~si~dlsr~~g~sp~~irg 140 (160)
T PF09824_consen 110 EEKIEAEIENGNTSIGDLSRKLGISPTFIRG 140 (160)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999999985982189999881878999999
No 8
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This family consists of several proteins from Sulfolobus solfataricus described as first ORF in transposon ISC1212.
Probab=32.33 E-value=14 Score=15.77 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=16.2
Q ss_pred HHHHHHC----CCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 9988718----9998988999999998716824
Q T0554 81 NYKHLLG----RAPYDESEVIFHLDLYENEGFD 109 (135)
Q Consensus 81 ~~khlLG----R~p~~~~Ei~~~~~i~a~~G~~ 109 (135)
.++.++| .++-+.+-+..+-+.+...|..
T Consensus 37 ~~~~~~gl~~~~~~pd~stl~rfr~rl~~~~~~ 69 (77)
T PF05598_consen 37 SFRYFCGLDLDEPVPDHSTLSRFRKRLIEHGLL 69 (77)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHH
T ss_conf 999982853135799827999999998672099
No 9
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=26.76 E-value=13 Score=15.92 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 2330468888745897789999998
Q T0554 34 SERLVSAESLLRNGKITVREFVRAV 58 (135)
Q Consensus 34 ~erl~~~ES~lrng~IsVreFVr~l 58 (135)
..+|..++-.+.+|+||-+++...-
T Consensus 10 ~~~L~~L~~e~~~GdiT~KGY~kkr 34 (111)
T PF06464_consen 10 RERLKELDLELSEGDITEKGYEKKR 34 (111)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999987411422099999999
No 10
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; PDB: 3c5y_N 2ppw_A.
Probab=21.79 E-value=22 Score=14.55 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=20.4
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCHHH
Q ss_conf 9999998513788761035686057
Q T0554 52 REFVRAVAKSELYKEKFLYGNFQTR 76 (135)
Q Consensus 52 reFVr~lakS~~yr~~f~~~~~~~r 76 (135)
+|+|++-..++-|++-||..+-.-.
T Consensus 16 qdlvK~AvsGe~Fqe~FF~Ncq~~e 40 (48)
T PF12408_consen 16 QDLVKTAVSGERFQECFFANCQDEE 40 (48)
T ss_dssp HHHHHHHC---HHHHHHCCC---HH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9999988233989999884288089
Done!