Query T0554 TeR219A , , 135 residues
Match_columns 135
No_of_seqs 113 out of 292
Neff 4.6
Searched_HMMs 15564
Date Fri May 21 18:04:20 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0554.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0554.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jf2a1 b.81.1.1 (A:1-262) UDP 61.5 5.5 0.00035 19.2 4.0 54 6-62 204-257 (262)
2 d1np3a1 a.100.1.2 (A:183-327) 49.6 6.4 0.00041 18.7 2.8 65 58-123 4-76 (145)
3 d1ucva_ a.60.1.2 (A:) Ephrin t 40.3 7.8 0.0005 18.2 2.0 29 45-74 4-32 (81)
4 d1e32a2 c.37.1.20 (A:201-458) 34.4 17 0.0011 16.0 3.6 53 63-117 162-216 (258)
5 d1g8ia_ a.39.1.5 (A:) Frequeni 32.7 18 0.0012 15.8 4.4 51 45-103 73-125 (187)
6 d3c1va1 a.39.1.2 (A:2-94) Calc 31.5 19 0.0012 15.7 3.9 64 9-72 28-92 (93)
7 d1oqpa_ a.39.1.5 (A:) Caltract 31.4 6.1 0.00039 18.9 0.3 20 45-64 58-77 (77)
8 d1tiza_ a.39.1.5 (A:) Calmodul 29.7 20 0.0013 15.5 3.7 37 45-107 14-50 (67)
9 d1ksoa_ a.39.1.2 (A:) Calcycli 29.6 15 0.00096 16.4 2.0 64 9-72 28-92 (93)
10 d1omra_ a.39.1.5 (A:) Recoveri 28.6 21 0.0014 15.4 4.3 53 45-105 76-130 (201)
11 d2jf2a1 b.81.1.1 (A:1-262) UDP 28.1 22 0.0014 15.3 2.8 53 7-62 205-257 (262)
12 d1or7c_ a.180.1.1 (C:) N-termi 25.2 20 0.0013 15.6 2.0 40 40-83 5-44 (66)
13 d1ezwa_ c.1.16.3 (A:) Coenzyme 23.4 10 0.00065 17.5 0.3 44 91-134 301-347 (347)
14 d1j2za_ b.81.1.1 (A:) UDP N-ac 23.2 22 0.0014 15.3 2.0 55 5-62 197-251 (259)
15 d1or7c_ a.180.1.1 (C:) N-termi 23.2 23 0.0015 15.2 2.0 41 40-84 5-45 (66)
16 d1wp1a_ f.5.1.1 (A:) Outer mem 22.7 26 0.0017 14.8 2.2 57 35-91 187-243 (456)
17 d1auib_ a.39.1.5 (B:) Calcineu 22.3 20 0.0013 15.5 1.6 95 1-103 2-114 (165)
18 d1pvaa_ a.39.1.4 (A:) Parvalbu 21.6 25 0.0016 14.9 1.9 17 45-61 20-36 (109)
No 1
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} SCOP: d1j2za_
Probab=61.54 E-value=5.5 Score=19.16 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 898898889999999989883034322223304688887458977899999985137
Q T0554 6 RANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE 62 (135)
Q Consensus 6 ~~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~ 62 (135)
|.+++.+++ ..|+.+||.+|... ..-.+.+..+|.+..+-. .|++|+.-+..|+
T Consensus 204 r~~~~~~~i-~~l~~~~k~lf~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~fi~~s~ 257 (262)
T d2jf2a1 204 RRGFSREAI-TAIRNAYKLIYRSG-KTLDEVKPEIAELAETYP-EVKAFTDFFARST 257 (262)
T ss_dssp HTTCCHHHH-HHHHHHHHHHHTSC-CCHHHHHHHHHHHHTTCG-GGHHHHHHHHHCC
T ss_pred HCCCCHHHH-HHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCH-HHHHHHHHHHCCC
T ss_conf 527898999-99999999997269-978999999998522567-7999999985378
No 2
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=49.63 E-value=6.4 Score=18.74 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=47.8
Q ss_pred HHCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHCCCHHHHHHHCCCHHHHH
Q ss_conf 8513788761035686057999999887189998988--------99999999871682467786338478885
Q T0554 58 VAKSELYKEKFLYGNFQTRVIELNYKHLLGRAPYDES--------EVIFHLDLYENEGFDADIDSYIDSPEYTN 123 (135)
Q Consensus 58 lakS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~--------Ei~~~~~i~a~~G~~a~Id~lidS~EY~~ 123 (135)
-..||+|-.+-.=+-.....++.+|.+|.--. +.++ |+---.++++++|+..+..++-|++||-.
T Consensus 4 E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G-~~pe~Ay~e~~he~~lI~~li~~~Gl~~m~~~iSdTAeyG~ 76 (145)
T d1np3a1 4 ETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGE 76 (145)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 01223110289997799999999999999839-86999999999701136899999739999998530888999
No 3
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.31 E-value=7.8 Score=18.18 Aligned_cols=29 Identities=17% Similarity=0.546 Sum_probs=23.3
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCH
Q ss_conf 458977899999985137887610356860
Q T0554 45 RNGKITVREFVRAVAKSELYKEKFLYGNFQ 74 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~yr~~f~~~~~~ 74 (135)
.+|.+||.++.+.+..++ |...|-+....
T Consensus 4 ~~~~~sV~~WL~~lgL~q-Y~~~F~~~gi~ 32 (81)
T d1ucva_ 4 GSSGLTVGDWLDSIRMGR-YRDHFAAGGYS 32 (81)
T ss_dssp CCCCSBHHHHHHHTTCGG-GHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHHCCCC
T ss_conf 999872999998886499-99999995996
No 4
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.39 E-value=17 Score=15.98 Aligned_cols=53 Identities=8% Similarity=-0.044 Sum_probs=32.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHCCCHH-HHHHHCC
Q ss_conf 8876103568605799999988718999898899999999-87168246-7786338
Q T0554 63 LYKEKFLYGNFQTRVIELNYKHLLGRAPYDESEVIFHLDL-YENEGFDA-DIDSYID 117 (135)
Q Consensus 63 ~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i-~a~~G~~a-~Id~lid 117 (135)
.|-..++-+.|+....+..++++|+..+.+...- +..+ -.+.||.+ .|..+++
T Consensus 162 Rfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~--~~~la~~t~G~s~adl~~lv~ 216 (258)
T d1e32a2 162 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVD--LEQVANETHGHVGADLAALCS 216 (258)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCC--HHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCC--HHHHHHCCCCCCHHHHHHHHH
T ss_conf 3023237899998899987322045763345530--344442066778999999999
No 5
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.73 E-value=18 Score=15.81 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=30.8
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHH
Q ss_conf 45897789999998513788761035686057999999887--189998988999999998
Q T0554 45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHL--LGRAPYDESEVIFHLDLY 103 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~ 103 (135)
.+|.|+.+||+.++..-. ..+.-.-++.+|+.+ =|-.-.+..|+......+
T Consensus 73 ~dg~I~~~EF~~~l~~~~--------~~~~~e~l~~~F~~~D~d~dG~i~~~El~~~~~~~ 125 (187)
T d1g8ia_ 73 KDGRIEFSEFIQALSVTS--------RGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAI 125 (187)
T ss_dssp CSSEEEHHHHHHHHHHHH--------HCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHH
T ss_conf 999785999999999865--------47603369999999806999769699999999997
No 6
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}
Probab=31.51 E-value=19 Score=15.68 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 8988899999999898830343222-233046888874589778999999851378876103568
Q T0554 9 WSEEDLETVIRAVYRQVLGNDYVMA-SERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGN 72 (135)
Q Consensus 9 ~s~~~~~~vI~AaYrQVf~n~~~~~-~erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~ 72 (135)
.+.+|+..++++.....+++...-+ -+++...=-.=++|.|+-.||+.-+.+--.--..+|..+
T Consensus 28 L~~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~n~DG~I~F~EF~~lm~~l~~~~~~~~~~~ 92 (93)
T d3c1va1 28 LNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGF 92 (93)
T ss_dssp ECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHTTTSC
T ss_pred ECHHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 67999999999744210356899999999999982799997979999999999999999987249
No 7
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=31.36 E-value=6.1 Score=18.87 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=9.5
Q ss_pred HCCCCCHHHHHHHHHCCHHH
Q ss_conf 45897789999998513788
Q T0554 45 RNGKITVREFVRAVAKSELY 64 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~y 64 (135)
.+|.|+..||++-+.++.+|
T Consensus 58 ~~G~I~~~EF~~~m~k~~~~ 77 (77)
T d1oqpa_ 58 DDNEIDEDEFIRIMKKTSLF 77 (77)
T ss_dssp SSSEECHHHHHHHHHHTTCC
T ss_pred CCCCEEHHHHHHHHHCCCCC
T ss_conf 88939199999999704789
No 8
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.70 E-value=20 Score=15.49 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=27.4
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 458977899999985137887610356860579999998871899989889999999987168
Q T0554 45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLLGRAPYDESEVIFHLDLYENEG 107 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G 107 (135)
.+|.|+..||...+.. ||..+ ++.|+...+..+...|
T Consensus 14 ~~G~I~~~El~~~l~~-------------------------lg~~~-~~~~i~~~~~~~D~d~ 50 (67)
T d1tiza_ 14 KDGKLSLDEFREVALA-------------------------FSPYF-TQEDIVKFFEEIDVDG 50 (67)
T ss_dssp SSSCEEHHHHHHHHHH-------------------------TCTTS-CHHHHHHHHHHHCCSS
T ss_pred CCCCCCHHHHHHHHHH-------------------------HCCCC-CHHHHHHHHHHHCCCC
T ss_conf 8392869999999997-------------------------43365-5489999999857998
No 9
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=29.64 E-value=15 Score=16.38 Aligned_cols=64 Identities=13% Similarity=0.242 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 8988899999999898830343-222233046888874589778999999851378876103568
Q T0554 9 WSEEDLETVIRAVYRQVLGNDY-VMASERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGN 72 (135)
Q Consensus 9 ~s~~~~~~vI~AaYrQVf~n~~-~~~~erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~ 72 (135)
.|.+++..++++-....+++.. ..+-.++...--.=.+|.|+-.||+.-+++--.--..|+..+
T Consensus 28 ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~~l~~~~h~~~~~~ 92 (93)
T d1ksoa_ 28 LCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCHEYFKDC 92 (93)
T ss_dssp EEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHCGGGTTC
T ss_pred ECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87999999999864402456899999999999975799997969999999999999999997429
No 10
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.64 E-value=21 Score=15.37 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=29.2
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHH
Q ss_conf 45897789999998513788761035686057999999887--18999898899999999871
Q T0554 45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHL--LGRAPYDESEVIFHLDLYEN 105 (135)
Q Consensus 45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~a~ 105 (135)
.+|.|+.+||+.++..-. ..+...-+..+|+.+ =|..-.+..|+...+..+..
T Consensus 76 ~~G~I~f~EF~~~~~~~~--------~~~~~~~l~~~F~~~D~d~~G~is~~E~~~~~~~~~~ 130 (201)
T d1omra_ 76 SDGTLDFKEYVIALHMTS--------AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFK 130 (201)
T ss_dssp SSSEEEHHHHHHHHHHHH--------SSCGGGSHHHHHHHHCTTCSSSBCHHHHHHHHHHHHT
T ss_pred CCCEEEEHHHHHHHHHHC--------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998275315778887522--------2031899999999870478985289999999999874
No 11
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}
Probab=28.06 E-value=22 Score=15.30 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 98898889999999989883034322223304688887458977899999985137
Q T0554 7 ANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE 62 (135)
Q Consensus 7 ~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~ 62 (135)
..++.+ .-.-++.+||++|-... .-.+.+..++.+..+- =.+++|+.-+.+|+
T Consensus 205 ~g~~~e-~i~~lk~~~k~L~~~~~-~l~~~~~~l~~~~~~~-~~v~~~i~Fi~~s~ 257 (262)
T d2jf2a1 205 RGFSRE-AITAIRNAYKLIYRSGK-TLDEVKPEIAELAETY-PEVKAFTDFFARST 257 (262)
T ss_dssp TTCCHH-HHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHTTC-GGGHHHHHHHHHCC
T ss_pred CCCCHH-HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCC-HHHHHHHHHHHHCC
T ss_conf 178999-99999999999986699-7999999998650288-99999999997488
No 12
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]} SCOP: d1or7f_
Probab=25.22 E-value=20 Score=15.57 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=29.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 88887458977899999985137887610356860579999998
Q T0554 40 AESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYK 83 (135)
Q Consensus 40 ~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~k 83 (135)
.=|-|-+|+++--++.+.|.+++..|+. |.. |..|--..+
T Consensus 5 ~lSAL~DGE~~~~el~~~l~~d~e~r~~-W~~---Yhli~d~lr 44 (66)
T d1or7c_ 5 QLSALMDGETLDSELLNELAHNPEMQKT-WES---YHLIRDSMR 44 (66)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTCHHHHHH-HHH---HHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHH-HHH---HHHHHHHHH
T ss_conf 5555544899868899988438888999-999---999999971
No 13
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent tetrahydromethanopterin reductase {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=23.44 E-value=10 Score=17.45 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHC---CCHHHHHHCCCCCCCCCC
Q ss_conf 89889999999987168246778633---847888507884677768
Q T0554 91 YDESEVIFHLDLYENEGFDADIDSYI---DSPEYTNSFGDWVVPYYR 134 (135)
Q Consensus 91 ~~~~Ei~~~~~i~a~~G~~a~Id~li---dS~EY~~~FG~~~VPY~R 134 (135)
-+++++...+.-+.+.|.+.++=... +-.+-.+.||++++|..|
T Consensus 301 Gspe~v~~~l~~~~~~G~d~~~l~~~~~~~~~~~l~~fa~~ViP~lr 347 (347)
T d1ezwa_ 301 GDPDTVVDKIEELLKAGVTQVVVGSPIGPDKEKAIELVGQEVIPHFK 347 (347)
T ss_dssp ESHHHHHHHHHHHHHTTCCEEEECTTBCSSHHHHHHHHHHHTGGGTC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 69999999999999649998999578886888999999961002879
No 14
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}
Probab=23.24 E-value=22 Score=15.25 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 4898898889999999989883034322223304688887458977899999985137
Q T0554 5 LRANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE 62 (135)
Q Consensus 5 l~~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~ 62 (135)
||..++..++.. ++.+||++|-.. ..-.+.+...+.+.. ..--+++|+.-+.+|+
T Consensus 197 lr~~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~fi~~s~ 251 (259)
T d1j2za_ 197 MRQLLESKDIDF-IYALYKRLFRPI-PSLRESAKLELEEHA-NNPFVKEICSFILESS 251 (259)
T ss_dssp HHHHSCHHHHHH-HHHHHHHHTCSS-SCHHHHHHHHHHHTS-SCHHHHHHHHHHHHCS
T ss_pred HCCCCCHHHHHH-HHHHHHHHHHCC-CCHHHHHHHHHHHCC-CCHHHHHHHHHHHCCC
T ss_conf 101131677999-999999998458-779999999987646-9999999999997089
No 15
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=23.24 E-value=23 Score=15.18 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 888874589778999999851378876103568605799999988
Q T0554 40 AESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKH 84 (135)
Q Consensus 40 ~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~kh 84 (135)
.=|-|-+|+++--+++++|.+++-.+.. |. .|..|--+.+.
T Consensus 5 ~lSAL~DgE~~~~el~~~l~~d~e~~~~-W~---~Yhli~d~lr~ 45 (66)
T d1or7c_ 5 QLSALMDGETLDSELLNELAHNPEMQKT-WE---SYHLIRDSMRG 45 (66)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTCHHHHHH-HH---HHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCHHHHHH-HH---HHHHHHHHHHC
T ss_conf 9999992887739999998659999999-99---99999999865
No 16
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.71 E-value=26 Score=14.80 Aligned_cols=57 Identities=11% Similarity=-0.044 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 330468888745897789999998513788761035686057999999887189998
Q T0554 35 ERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLLGRAPY 91 (135)
Q Consensus 35 erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~ 91 (135)
..+...+.++..|.++--|..++-+.=..-+......-...+......+.++|.++.
T Consensus 187 ~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~~~~ 243 (456)
T d1wp1a_ 187 KSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGSGIP 243 (456)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999888637852010004788999999889999999999999999998289975
No 17
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.27 E-value=20 Score=15.51 Aligned_cols=95 Identities=13% Similarity=0.269 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCC---------------CCHHHHHHHHCCCCCHHHHHHHHHCCHHH
Q ss_conf 975648988988899999999898830-34322223---------------30468888745897789999998513788
Q T0554 1 MPVELRANWSEEDLETVIRAVYRQVLG-NDYVMASE---------------RLVSAESLLRNGKITVREFVRAVAKSELY 64 (135)
Q Consensus 1 ~piel~~~~s~~~~~~vI~AaYrQVf~-n~~~~~~e---------------rl~~~ES~lrng~IsVreFVr~lakS~~y 64 (135)
-|.+|-..+|++++..+ +.+++..=- +.....-+ ++...=..=.+|.|+-.||++.++.-
T Consensus 2 ~~~~~~t~ft~eei~~l-~~~F~~~D~d~~G~I~~~E~~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~EFl~~~~~~--- 77 (165)
T d1auib_ 2 YPLEMCSHFDADEIKRL-GKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQF--- 77 (165)
T ss_dssp CCCCCCCSCCHHHHHHH-HHHHHHHCTTCCSEECHHHHTTSHHHHTCTTHHHHHHHHCTTCSSSEEHHHHHHHHGGG---
T ss_pred CHHHHCCCCCHHHHHHH-HHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC---
T ss_conf 45777079999999999-99999887899897959999976602688899999999732310124466663210012---
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHH
Q ss_conf 7610356860579999998871--89998988999999998
Q T0554 65 KEKFLYGNFQTRVIELNYKHLL--GRAPYDESEVIFHLDLY 103 (135)
Q Consensus 65 r~~f~~~~~~~r~iEl~~khlL--GR~p~~~~Ei~~~~~i~ 103 (135)
-........+...|+.+= |-...+..|+.......
T Consensus 78 ----~~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~ 114 (165)
T d1auib_ 78 ----SVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM 114 (165)
T ss_dssp ----CTTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf ----2100257899999987502432223289999999975
No 18
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}
Probab=21.64 E-value=25 Score=14.94 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=13.6
Q ss_pred HCCCCCHHHHHHHHHCC
Q ss_conf 45897789999998513
Q T0554 45 RNGKITVREFVRAVAKS 61 (135)
Q Consensus 45 rng~IsVreFVr~lakS 61 (135)
.+|.|+-.||+..++.+
T Consensus 20 ~dG~idf~EF~~~~~~~ 36 (109)
T d1pvaa_ 20 AEGSFNHKKFFALVGLK 36 (109)
T ss_dssp STTCCCHHHHHHHHTCT
T ss_pred CCCCCCHHHHHHHHHHC
T ss_conf 89978699999999871
Done!