Query         T0554 TeR219A , , 135 residues
Match_columns 135
No_of_seqs    113 out of 292
Neff          4.6 
Searched_HMMs 15564
Date          Fri May 21 18:04:20 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0554.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/hhm/T0554.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2jf2a1 b.81.1.1 (A:1-262) UDP  61.5     5.5 0.00035   19.2   4.0   54    6-62    204-257 (262)
  2 d1np3a1 a.100.1.2 (A:183-327)   49.6     6.4 0.00041   18.7   2.8   65   58-123     4-76  (145)
  3 d1ucva_ a.60.1.2 (A:) Ephrin t  40.3     7.8  0.0005   18.2   2.0   29   45-74      4-32  (81)
  4 d1e32a2 c.37.1.20 (A:201-458)   34.4      17  0.0011   16.0   3.6   53   63-117   162-216 (258)
  5 d1g8ia_ a.39.1.5 (A:) Frequeni  32.7      18  0.0012   15.8   4.4   51   45-103    73-125 (187)
  6 d3c1va1 a.39.1.2 (A:2-94) Calc  31.5      19  0.0012   15.7   3.9   64    9-72     28-92  (93)
  7 d1oqpa_ a.39.1.5 (A:) Caltract  31.4     6.1 0.00039   18.9   0.3   20   45-64     58-77  (77)
  8 d1tiza_ a.39.1.5 (A:) Calmodul  29.7      20  0.0013   15.5   3.7   37   45-107    14-50  (67)
  9 d1ksoa_ a.39.1.2 (A:) Calcycli  29.6      15 0.00096   16.4   2.0   64    9-72     28-92  (93)
 10 d1omra_ a.39.1.5 (A:) Recoveri  28.6      21  0.0014   15.4   4.3   53   45-105    76-130 (201)
 11 d2jf2a1 b.81.1.1 (A:1-262) UDP  28.1      22  0.0014   15.3   2.8   53    7-62    205-257 (262)
 12 d1or7c_ a.180.1.1 (C:) N-termi  25.2      20  0.0013   15.6   2.0   40   40-83      5-44  (66)
 13 d1ezwa_ c.1.16.3 (A:) Coenzyme  23.4      10 0.00065   17.5   0.3   44   91-134   301-347 (347)
 14 d1j2za_ b.81.1.1 (A:) UDP N-ac  23.2      22  0.0014   15.3   2.0   55    5-62    197-251 (259)
 15 d1or7c_ a.180.1.1 (C:) N-termi  23.2      23  0.0015   15.2   2.0   41   40-84      5-45  (66)
 16 d1wp1a_ f.5.1.1 (A:) Outer mem  22.7      26  0.0017   14.8   2.2   57   35-91    187-243 (456)
 17 d1auib_ a.39.1.5 (B:) Calcineu  22.3      20  0.0013   15.5   1.6   95    1-103     2-114 (165)
 18 d1pvaa_ a.39.1.4 (A:) Parvalbu  21.6      25  0.0016   14.9   1.9   17   45-61     20-36  (109)

No 1  
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} SCOP: d1j2za_
Probab=61.54  E-value=5.5  Score=19.16  Aligned_cols=54  Identities=24%  Similarity=0.316  Sum_probs=36.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf             898898889999999989883034322223304688887458977899999985137
Q T0554             6 RANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE   62 (135)
Q Consensus         6 ~~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~   62 (135)
                      |.+++.+++ ..|+.+||.+|... ..-.+.+..+|.+..+-. .|++|+.-+..|+
T Consensus       204 r~~~~~~~i-~~l~~~~k~lf~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~fi~~s~  257 (262)
T d2jf2a1         204 RRGFSREAI-TAIRNAYKLIYRSG-KTLDEVKPEIAELAETYP-EVKAFTDFFARST  257 (262)
T ss_dssp             HTTCCHHHH-HHHHHHHHHHHTSC-CCHHHHHHHHHHHHTTCG-GGHHHHHHHHHCC
T ss_pred             HCCCCHHHH-HHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCH-HHHHHHHHHHCCC
T ss_conf             527898999-99999999997269-978999999998522567-7999999985378


No 2  
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=49.63  E-value=6.4  Score=18.74  Aligned_cols=65  Identities=17%  Similarity=0.283  Sum_probs=47.8

Q ss_pred             HHCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHHCCCHHHHHHHCCCHHHHH
Q ss_conf             8513788761035686057999999887189998988--------99999999871682467786338478885
Q T0554            58 VAKSELYKEKFLYGNFQTRVIELNYKHLLGRAPYDES--------EVIFHLDLYENEGFDADIDSYIDSPEYTN  123 (135)
Q Consensus        58 lakS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~--------Ei~~~~~i~a~~G~~a~Id~lidS~EY~~  123 (135)
                      -..||+|-.+-.=+-.....++.+|.+|.--. +.++        |+---.++++++|+..+..++-|++||-.
T Consensus         4 E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G-~~pe~Ay~e~~he~~lI~~li~~~Gl~~m~~~iSdTAeyG~   76 (145)
T d1np3a1           4 ETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGE   76 (145)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             01223110289997799999999999999839-86999999999701136899999739999998530888999


No 3  
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.31  E-value=7.8  Score=18.18  Aligned_cols=29  Identities=17%  Similarity=0.546  Sum_probs=23.3

Q ss_pred             HCCCCCHHHHHHHHHCCHHHHHHCCCCCCH
Q ss_conf             458977899999985137887610356860
Q T0554            45 RNGKITVREFVRAVAKSELYKEKFLYGNFQ   74 (135)
Q Consensus        45 rng~IsVreFVr~lakS~~yr~~f~~~~~~   74 (135)
                      .+|.+||.++.+.+..++ |...|-+....
T Consensus         4 ~~~~~sV~~WL~~lgL~q-Y~~~F~~~gi~   32 (81)
T d1ucva_           4 GSSGLTVGDWLDSIRMGR-YRDHFAAGGYS   32 (81)
T ss_dssp             CCCCSBHHHHHHHTTCGG-GHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHCCCHH-HHHHHHHCCCC
T ss_conf             999872999998886499-99999995996


No 4  
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.39  E-value=17  Score=15.98  Aligned_cols=53  Identities=8%  Similarity=-0.044  Sum_probs=32.0

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHCCCHH-HHHHHCC
Q ss_conf             8876103568605799999988718999898899999999-87168246-7786338
Q T0554            63 LYKEKFLYGNFQTRVIELNYKHLLGRAPYDESEVIFHLDL-YENEGFDA-DIDSYID  117 (135)
Q Consensus        63 ~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i-~a~~G~~a-~Id~lid  117 (135)
                      .|-..++-+.|+....+..++++|+..+.+...-  +..+ -.+.||.+ .|..+++
T Consensus       162 Rfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~--~~~la~~t~G~s~adl~~lv~  216 (258)
T d1e32a2         162 RFDREVDIGIPDATGRLEILQIHTKNMKLADDVD--LEQVANETHGHVGADLAALCS  216 (258)
T ss_dssp             SSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCC--HHHHHHHCTTCCHHHHHHHHH
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCC--HHHHHHCCCCCCHHHHHHHHH
T ss_conf             3023237899998899987322045763345530--344442066778999999999


No 5  
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.73  E-value=18  Score=15.81  Aligned_cols=51  Identities=16%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHH
Q ss_conf             45897789999998513788761035686057999999887--189998988999999998
Q T0554            45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHL--LGRAPYDESEVIFHLDLY  103 (135)
Q Consensus        45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~  103 (135)
                      .+|.|+.+||+.++..-.        ..+.-.-++.+|+.+  =|-.-.+..|+......+
T Consensus        73 ~dg~I~~~EF~~~l~~~~--------~~~~~e~l~~~F~~~D~d~dG~i~~~El~~~~~~~  125 (187)
T d1g8ia_          73 KDGRIEFSEFIQALSVTS--------RGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAI  125 (187)
T ss_dssp             CSSEEEHHHHHHHHHHHH--------HCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHH
T ss_conf             999785999999999865--------47603369999999806999769699999999997


No 6  
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}
Probab=31.51  E-value=19  Score=15.68  Aligned_cols=64  Identities=16%  Similarity=0.245  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf             8988899999999898830343222-233046888874589778999999851378876103568
Q T0554             9 WSEEDLETVIRAVYRQVLGNDYVMA-SERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGN   72 (135)
Q Consensus         9 ~s~~~~~~vI~AaYrQVf~n~~~~~-~erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~   72 (135)
                      .+.+|+..++++.....+++...-+ -+++...=-.=++|.|+-.||+.-+.+--.--..+|..+
T Consensus        28 L~~~Elk~~l~~~~~~~~~~~~~~~~~~~i~~~~D~n~DG~I~F~EF~~lm~~l~~~~~~~~~~~   92 (93)
T d3c1va1          28 LNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGF   92 (93)
T ss_dssp             ECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             ECHHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             67999999999744210356899999999999982799997979999999999999999987249


No 7  
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=31.36  E-value=6.1  Score=18.87  Aligned_cols=20  Identities=30%  Similarity=0.635  Sum_probs=9.5

Q ss_pred             HCCCCCHHHHHHHHHCCHHH
Q ss_conf             45897789999998513788
Q T0554            45 RNGKITVREFVRAVAKSELY   64 (135)
Q Consensus        45 rng~IsVreFVr~lakS~~y   64 (135)
                      .+|.|+..||++-+.++.+|
T Consensus        58 ~~G~I~~~EF~~~m~k~~~~   77 (77)
T d1oqpa_          58 DDNEIDEDEFIRIMKKTSLF   77 (77)
T ss_dssp             SSSEECHHHHHHHHHHTTCC
T ss_pred             CCCCEEHHHHHHHHHCCCCC
T ss_conf             88939199999999704789


No 8  
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.70  E-value=20  Score=15.49  Aligned_cols=37  Identities=14%  Similarity=0.380  Sum_probs=27.4

Q ss_pred             HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             458977899999985137887610356860579999998871899989889999999987168
Q T0554            45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLLGRAPYDESEVIFHLDLYENEG  107 (135)
Q Consensus        45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G  107 (135)
                      .+|.|+..||...+..                         ||..+ ++.|+...+..+...|
T Consensus        14 ~~G~I~~~El~~~l~~-------------------------lg~~~-~~~~i~~~~~~~D~d~   50 (67)
T d1tiza_          14 KDGKLSLDEFREVALA-------------------------FSPYF-TQEDIVKFFEEIDVDG   50 (67)
T ss_dssp             SSSCEEHHHHHHHHHH-------------------------TCTTS-CHHHHHHHHHHHCCSS
T ss_pred             CCCCCCHHHHHHHHHH-------------------------HCCCC-CHHHHHHHHHHHCCCC
T ss_conf             8392869999999997-------------------------43365-5489999999857998


No 9  
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=29.64  E-value=15  Score=16.38  Aligned_cols=64  Identities=13%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf             8988899999999898830343-222233046888874589778999999851378876103568
Q T0554             9 WSEEDLETVIRAVYRQVLGNDY-VMASERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGN   72 (135)
Q Consensus         9 ~s~~~~~~vI~AaYrQVf~n~~-~~~~erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~   72 (135)
                      .|.+++..++++-....+++.. ..+-.++...--.=.+|.|+-.||+.-+++--.--..|+..+
T Consensus        28 ls~~Elk~ll~~~~~~~~~~~~~~~~~~~~~~~lD~n~Dg~IdF~EF~~l~~~l~~~~h~~~~~~   92 (93)
T d1ksoa_          28 LCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCHEYFKDC   92 (93)
T ss_dssp             EEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHCGGGTTC
T ss_pred             ECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             87999999999864402456899999999999975799997969999999999999999997429


No 10 
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.64  E-value=21  Score=15.37  Aligned_cols=53  Identities=15%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHH
Q ss_conf             45897789999998513788761035686057999999887--18999898899999999871
Q T0554            45 RNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHL--LGRAPYDESEVIFHLDLYEN  105 (135)
Q Consensus        45 rng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~a~  105 (135)
                      .+|.|+.+||+.++..-.        ..+...-+..+|+.+  =|..-.+..|+...+..+..
T Consensus        76 ~~G~I~f~EF~~~~~~~~--------~~~~~~~l~~~F~~~D~d~~G~is~~E~~~~~~~~~~  130 (201)
T d1omra_          76 SDGTLDFKEYVIALHMTS--------AGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFK  130 (201)
T ss_dssp             SSSEEEHHHHHHHHHHHH--------SSCGGGSHHHHHHHHCTTCSSSBCHHHHHHHHHHHHT
T ss_pred             CCCEEEEHHHHHHHHHHC--------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             998275315778887522--------2031899999999870478985289999999999874


No 11 
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}
Probab=28.06  E-value=22  Score=15.30  Aligned_cols=53  Identities=23%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf             98898889999999989883034322223304688887458977899999985137
Q T0554             7 ANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE   62 (135)
Q Consensus         7 ~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~   62 (135)
                      ..++.+ .-.-++.+||++|-... .-.+.+..++.+..+- =.+++|+.-+.+|+
T Consensus       205 ~g~~~e-~i~~lk~~~k~L~~~~~-~l~~~~~~l~~~~~~~-~~v~~~i~Fi~~s~  257 (262)
T d2jf2a1         205 RGFSRE-AITAIRNAYKLIYRSGK-TLDEVKPEIAELAETY-PEVKAFTDFFARST  257 (262)
T ss_dssp             TTCCHH-HHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHTTC-GGGHHHHHHHHHCC
T ss_pred             CCCCHH-HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCC-HHHHHHHHHHHHCC
T ss_conf             178999-99999999999986699-7999999998650288-99999999997488


No 12 
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]} SCOP: d1or7f_
Probab=25.22  E-value=20  Score=15.57  Aligned_cols=40  Identities=15%  Similarity=0.163  Sum_probs=29.9

Q ss_pred             HHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             88887458977899999985137887610356860579999998
Q T0554            40 AESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYK   83 (135)
Q Consensus        40 ~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~k   83 (135)
                      .=|-|-+|+++--++.+.|.+++..|+. |..   |..|--..+
T Consensus         5 ~lSAL~DGE~~~~el~~~l~~d~e~r~~-W~~---Yhli~d~lr   44 (66)
T d1or7c_           5 QLSALMDGETLDSELLNELAHNPEMQKT-WES---YHLIRDSMR   44 (66)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHTCHHHHHH-HHH---HHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHCCHHHHHH-HHH---HHHHHHHHH
T ss_conf             5555544899868899988438888999-999---999999971


No 13 
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent tetrahydromethanopterin reductase {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=23.44  E-value=10  Score=17.45  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHC---CCHHHHHHCCCCCCCCCC
Q ss_conf             89889999999987168246778633---847888507884677768
Q T0554            91 YDESEVIFHLDLYENEGFDADIDSYI---DSPEYTNSFGDWVVPYYR  134 (135)
Q Consensus        91 ~~~~Ei~~~~~i~a~~G~~a~Id~li---dS~EY~~~FG~~~VPY~R  134 (135)
                      -+++++...+.-+.+.|.+.++=...   +-.+-.+.||++++|..|
T Consensus       301 Gspe~v~~~l~~~~~~G~d~~~l~~~~~~~~~~~l~~fa~~ViP~lr  347 (347)
T d1ezwa_         301 GDPDTVVDKIEELLKAGVTQVVVGSPIGPDKEKAIELVGQEVIPHFK  347 (347)
T ss_dssp             ESHHHHHHHHHHHHHTTCCEEEECTTBCSSHHHHHHHHHHHTGGGTC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             69999999999999649998999578886888999999961002879


No 14 
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}
Probab=23.24  E-value=22  Score=15.25  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=24.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf             4898898889999999989883034322223304688887458977899999985137
Q T0554             5 LRANWSEEDLETVIRAVYRQVLGNDYVMASERLVSAESLLRNGKITVREFVRAVAKSE   62 (135)
Q Consensus         5 l~~~~s~~~~~~vI~AaYrQVf~n~~~~~~erl~~~ES~lrng~IsVreFVr~lakS~   62 (135)
                      ||..++..++.. ++.+||++|-.. ..-.+.+...+.+.. ..--+++|+.-+.+|+
T Consensus       197 lr~~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~fi~~s~  251 (259)
T d1j2za_         197 MRQLLESKDIDF-IYALYKRLFRPI-PSLRESAKLELEEHA-NNPFVKEICSFILESS  251 (259)
T ss_dssp             HHHHSCHHHHHH-HHHHHHHHTCSS-SCHHHHHHHHHHHTS-SCHHHHHHHHHHHHCS
T ss_pred             HCCCCCHHHHHH-HHHHHHHHHHCC-CCHHHHHHHHHHHCC-CCHHHHHHHHHHHCCC
T ss_conf             101131677999-999999998458-779999999987646-9999999999997089


No 15 
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=23.24  E-value=23  Score=15.18  Aligned_cols=41  Identities=15%  Similarity=0.146  Sum_probs=31.0

Q ss_pred             HHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             888874589778999999851378876103568605799999988
Q T0554            40 AESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKH   84 (135)
Q Consensus        40 ~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~kh   84 (135)
                      .=|-|-+|+++--+++++|.+++-.+.. |.   .|..|--+.+.
T Consensus         5 ~lSAL~DgE~~~~el~~~l~~d~e~~~~-W~---~Yhli~d~lr~   45 (66)
T d1or7c_           5 QLSALMDGETLDSELLNELAHNPEMQKT-WE---SYHLIRDSMRG   45 (66)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHTCHHHHHH-HH---HHHHHHHHHHT
T ss_pred             HHHHHHCCCCCHHHHHHHHHCCHHHHHH-HH---HHHHHHHHHHC
T ss_conf             9999992887739999998659999999-99---99999999865


No 16 
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.71  E-value=26  Score=14.80  Aligned_cols=57  Identities=11%  Similarity=-0.044  Sum_probs=37.4

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             330468888745897789999998513788761035686057999999887189998
Q T0554            35 ERLVSAESLLRNGKITVREFVRAVAKSELYKEKFLYGNFQTRVIELNYKHLLGRAPY   91 (135)
Q Consensus        35 erl~~~ES~lrng~IsVreFVr~lakS~~yr~~f~~~~~~~r~iEl~~khlLGR~p~   91 (135)
                      ..+...+.++..|.++--|..++-+.=..-+......-...+......+.++|.++.
T Consensus       187 ~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~~~~  243 (456)
T d1wp1a_         187 KSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGSGIP  243 (456)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999888637852010004788999999889999999999999999998289975


No 17 
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.27  E-value=20  Score=15.51  Aligned_cols=95  Identities=13%  Similarity=0.269  Sum_probs=54.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCC---------------CCHHHHHHHHCCCCCHHHHHHHHHCCHHH
Q ss_conf             975648988988899999999898830-34322223---------------30468888745897789999998513788
Q T0554             1 MPVELRANWSEEDLETVIRAVYRQVLG-NDYVMASE---------------RLVSAESLLRNGKITVREFVRAVAKSELY   64 (135)
Q Consensus         1 ~piel~~~~s~~~~~~vI~AaYrQVf~-n~~~~~~e---------------rl~~~ES~lrng~IsVreFVr~lakS~~y   64 (135)
                      -|.+|-..+|++++..+ +.+++..=- +.....-+               ++...=..=.+|.|+-.||++.++.-   
T Consensus         2 ~~~~~~t~ft~eei~~l-~~~F~~~D~d~~G~I~~~E~~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~EFl~~~~~~---   77 (165)
T d1auib_           2 YPLEMCSHFDADEIKRL-GKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQF---   77 (165)
T ss_dssp             CCCCCCCSCCHHHHHHH-HHHHHHHCTTCCSEECHHHHTTSHHHHTCTTHHHHHHHHCTTCSSSEEHHHHHHHHGGG---
T ss_pred             CHHHHCCCCCHHHHHHH-HHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC---
T ss_conf             45777079999999999-99999887899897959999976602688899999999732310124466663210012---


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHH
Q ss_conf             7610356860579999998871--89998988999999998
Q T0554            65 KEKFLYGNFQTRVIELNYKHLL--GRAPYDESEVIFHLDLY  103 (135)
Q Consensus        65 r~~f~~~~~~~r~iEl~~khlL--GR~p~~~~Ei~~~~~i~  103 (135)
                          -........+...|+.+=  |-...+..|+.......
T Consensus        78 ----~~~~~~~~~~~~~f~~~d~d~~g~Is~~el~~~l~~~  114 (165)
T d1auib_          78 ----SVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMM  114 (165)
T ss_dssp             ----CTTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             ----2100257899999987502432223289999999975


No 18 
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}
Probab=21.64  E-value=25  Score=14.94  Aligned_cols=17  Identities=18%  Similarity=0.346  Sum_probs=13.6

Q ss_pred             HCCCCCHHHHHHHHHCC
Q ss_conf             45897789999998513
Q T0554            45 RNGKITVREFVRAVAKS   61 (135)
Q Consensus        45 rng~IsVreFVr~lakS   61 (135)
                      .+|.|+-.||+..++.+
T Consensus        20 ~dG~idf~EF~~~~~~~   36 (109)
T d1pvaa_          20 AEGSFNHKKFFALVGLK   36 (109)
T ss_dssp             STTCCCHHHHHHHHTCT
T ss_pred             CCCCCCHHHHHHHHHHC
T ss_conf             89978699999999871


Done!