Query T0555 SgR209C, , 148 residues
Match_columns 148
No_of_seqs 110 out of 283
Neff 4.5
Searched_HMMs 22458
Date Fri May 21 18:04:40 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0555.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/hhm/T0555.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j2z_A Acyl-[acyl-carrier-prot 45.7 9 0.0004 18.4 2.2 55 17-75 198-252 (270)
2 1snl_A Nucleobindin 1, calnuc; 39.3 16 0.00072 16.8 2.7 55 21-75 37-102 (103)
3 1a4p_A S100A10; S100 family, E 38.6 20 0.0009 16.2 4.3 55 20-74 24-78 (96)
4 1k2h_A S100A1, S-100 protein, 37.6 21 0.00093 16.1 5.4 63 21-83 28-90 (93)
5 2d8n_A Recoverin; structural g 37.1 21 0.00094 16.0 3.7 53 58-118 84-138 (207)
6 2k7c_A CABP1, calbrain, calciu 35.5 13 0.0006 17.3 1.8 16 58-73 57-72 (72)
7 1n00_A Annexin GH1; membrane-b 34.6 23 0.001 15.8 6.5 102 20-143 117-222 (321)
8 2a1v_A Conserved hypothetical 33.5 19 0.00086 16.3 2.3 26 15-40 93-118 (144)
9 2ehb_A Calcineurin B-like prot 33.0 25 0.0011 15.6 3.1 51 56-113 85-137 (207)
10 3c1v_A Protein S100-A4; Ca2+-b 31.9 26 0.0011 15.5 4.5 67 21-87 41-107 (113)
11 2rgi_A Protein S100-A2, protei 31.8 16 0.00072 16.8 1.7 64 21-84 30-93 (98)
12 1aui_B Calcineurin, serine/thr 29.6 28 0.0012 15.2 2.7 100 11-118 4-120 (169)
13 1kso_A S-100E protein, S100 ca 29.3 28 0.0013 15.2 3.2 63 21-83 29-91 (101)
14 2h7b_A Core-binding factor, ML 26.2 32 0.0014 14.9 3.0 31 41-71 22-52 (105)
15 2p6v_A Transcription initiatio 25.9 33 0.0015 14.8 3.2 38 43-85 39-76 (114)
16 3i6v_A Periplasmic His/Glu/Gln 25.7 16 0.00071 16.8 0.8 28 121-148 195-226 (232)
17 3hsq_A Acyl-[acyl-carrier-prot 25.4 33 0.0015 14.8 2.9 52 20-75 201-252 (259)
18 2ggm_A Centrin-2; EF-hand supe 25.4 19 0.00085 16.3 1.1 19 55-73 77-95 (172)
19 2bec_A Calcineurin B homologou 25.1 18 0.00079 16.5 1.0 17 58-74 74-90 (202)
20 1e32_A P97; membrane fusion; H 24.9 34 0.0015 14.7 4.5 51 79-130 365-416 (458)
21 1juo_A Sorcin; calcium-binding 24.1 35 0.0016 14.6 2.6 62 57-120 85-152 (198)
22 1pva_A Parvalbumin; calcium bi 23.9 32 0.0014 14.8 2.1 18 58-75 21-38 (110)
23 1ucv_A Ephrin type-A receptor 23.1 32 0.0014 14.8 1.9 29 58-87 4-32 (81)
24 1m9i_A Annexin VI; calcium-bin 22.2 38 0.0017 14.4 5.4 19 22-41 122-140 (672)
25 2zc2_A DNAD-like replication p 21.0 40 0.0018 14.2 3.9 29 94-123 9-37 (78)
26 1or7_C Sigma-E factor negative 20.9 38 0.0017 14.4 1.9 40 54-97 6-45 (90)
27 2ppw_A Conserved domain protei 20.5 37 0.0016 14.5 1.8 36 65-101 181-216 (216)
28 2o36_A ThiMet oligopeptidase; 20.4 42 0.0019 14.1 2.7 33 74-107 623-655 (674)
No 1
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=45.69 E-value=9 Score=18.44 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=34.4
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 57898988899999999898840000002100015678877268878899999984257
Q T0555 17 MKPGLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSP 75 (148)
Q Consensus 17 l~~~~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~ 75 (148)
|+...+..++. .|+.+||.+|-... . -.+.+..++.++.+.. -|++|+.-+..|+
T Consensus 198 lr~~~~~~~i~-~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~f~~~s~ 252 (270)
T 1j2z_A 198 MRQLLESKDID-FIYALYKRLFRPIP-S-LRESAKLELEEHANNP-FVKEICSFILESS 252 (270)
T ss_dssp HHHHSCHHHHH-HHHHHHHHHTCSSS-C-HHHHHHHHHHHTSSCH-HHHHHHHHHHHCS
T ss_pred HHCCCCHHHHH-HHHHHHHHHHHCCC-C-HHHHHHHHHHHCCCCH-HHHHHHHHHHHCC
T ss_conf 76478888999-99999999985687-6-9999999987737998-9999999997189
No 2
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=39.35 E-value=16 Score=16.81 Aligned_cols=55 Identities=11% Similarity=0.260 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHCHH---HHH--HHHHHHHHHH------CCCCCHHHHHHHHHCCH
Q ss_conf 8988899999999898840000002---100--0156788772------68878899999984257
Q T0555 21 LSALEKNAVIKAAYRQIFERDITKA---YSQ--SISYLESQVR------NGDISMKEFVRRLAKSP 75 (148)
Q Consensus 21 ~s~~e~~~vI~AaYrQVf~~~~~~~---~s~--r~~~lESqlr------nG~IsVreFVr~la~S~ 75 (148)
.|.+|+..++++...++........ ... ....++..++ +|.||..||++++.+-+
T Consensus 37 i~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~DG~Is~eEF~~~~~~~e 102 (103)
T 1snl_A 37 LDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLASTQRKE 102 (103)
T ss_dssp EEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 779999999999887523011131102354767999999999981899998194999999873369
No 3
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=38.55 E-value=20 Score=16.17 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 9898889999999989884000000210001567887726887889999998425
Q T0555 20 GLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKS 74 (148)
Q Consensus 20 ~~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S 74 (148)
..|..|+..+++.....+.+....+..-+++...=-.=.+|.|+-.||++-+++-
T Consensus 24 ~is~~El~~ll~~~~~~~~~~~~~~~~~~~~~~~lD~d~DG~I~F~EF~~l~~~l 78 (96)
T 1a4p_A 24 YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGL 78 (96)
T ss_dssp SBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 6859999999998633114677999999999999818999979799999999999
No 4
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2jpt_A
Probab=37.63 E-value=21 Score=16.07 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCC
Q ss_conf 898889999999989884000000210001567887726887889999998425788872256
Q T0555 21 LSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFE 83 (148)
Q Consensus 21 ~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f~~ 83 (148)
.|..|+..++++...-..+....+..-.++...--.=.+|.|+-.||+..+++-...-..+|.
T Consensus 28 Is~~El~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~n~DG~IdF~EF~~l~~~l~~~~~~~~~ 90 (93)
T 1k2h_A 28 LSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNNFFW 90 (93)
T ss_dssp CCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHTCCTTC
T ss_pred ECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 869999999998622125677999999999998668999969799999999999999999985
No 5
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=37.14 E-value=21 Score=16.02 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=27.0
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHH
Q ss_conf 26887889999998425788872256687068999987775--07899898899999999871
Q T0555 58 RNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRHI--LGRGPSSREEVQKYFSIVSS 118 (148)
Q Consensus 58 rnG~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~a~ 118 (148)
.+|.|+.+||+.++... .....-.-++.+|+.+ =|..-.+..|+.........
T Consensus 84 ~~g~I~f~EFl~~~~~~--------~~~~~~~~~~~~F~~~D~d~~G~Is~~E~~~~l~~~~~ 138 (207)
T 2d8n_A 84 LDGTLDFKEYVIALHMT--------TAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFK 138 (207)
T ss_dssp CCSEEEHHHHHHHHHHH--------SCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHHHH--------CCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHH
T ss_conf 99816412565554330--------25653768999999761089981719999999999865
No 6
>2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A
Probab=35.53 E-value=13 Score=17.31 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=10.2
Q ss_pred HCCCCCHHHHHHHHHC
Q ss_conf 2688788999999842
Q T0555 58 RNGDISMKEFVRRLAK 73 (148)
Q Consensus 58 rnG~IsVreFVr~la~ 73 (148)
.+|.|+..||+..+.+
T Consensus 57 ~dG~I~~~EF~~~m~k 72 (72)
T 2k7c_A 57 GDGRVDFEEFVRMMSR 72 (72)
T ss_dssp SSCCEEHHHHHHHHHC
T ss_pred CCCEEEHHHHHHHHCC
T ss_conf 9983849999999767
No 7
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=34.63 E-value=23 Score=15.77 Aligned_cols=102 Identities=15% Similarity=0.244 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHH----HHHH
Q ss_conf 989888999999998988400000021000156788772688788999999842578887225668706899----9987
Q T0555 20 GLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRAL----ELAF 95 (148)
Q Consensus 20 ~~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f~~~~~~~r~i----El~~ 95 (148)
+.|.+++..+ +++|++.|+++.... +.+.+ .| ..+.++-+|.+...+ -.+.-+...+ +..+
T Consensus 117 ~rs~~e~~~i-k~aY~~~y~~~L~~d-------i~~e~-sg--~~~~lll~ll~~~R~----e~~~vd~~~a~~da~~L~ 181 (321)
T 1n00_A 117 TRSANQLLHA-RQAYHARYKKSLEED-------VAHHT-TG--DFHKLLLPLVSSYRY----EGEEVNMTLAKTEAKLLH 181 (321)
T ss_dssp SSCHHHHHHH-HHHHHHHHSSCHHHH-------HHHHC-CH--HHHHHHHHHHHCCCC----CSCCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHH-------HHHCC-CH--HHHHHHHHHHHCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 3986999999-999999980769999-------98536-68--899999999845876----799769899888999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 775078998988999999998716822456653385788850786578
Q T0555 96 RHILGRGPSSREEVQKYFSIVSSGGLPALVDALVDSQEYADYFGEETV 143 (148)
Q Consensus 96 khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG~d~V 143 (148)
+..=|+.+.+. .++.|+++.-..-+- ++. .+|...+|.+..
T Consensus 182 ~a~~~~~~~~~----~~i~Il~~rs~~hL~-~i~--~~Y~~~~g~~L~ 222 (321)
T 1n00_A 182 EKISNKAYSDD----DVIRVLATRSKAQIN-ATL--NHYKNEYGNDIN 222 (321)
T ss_dssp HHHHTTCTTCH----HHHHHHHHSCHHHHH-HHH--HHHHHHHSSCTT
T ss_pred HHHCCCCCCHH----HHHHHHHHCCHHHHH-HHH--HHHHHHCCCCHH
T ss_conf 98616788789----999999858999999-999--999986184499
No 8
>2a1v_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; 2.15A {Deinococcus radiodurans} SCOP: d.198.3.1
Probab=33.48 E-value=19 Score=16.30 Aligned_cols=26 Identities=8% Similarity=0.195 Sum_probs=20.6
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 46578989888999999998988400
Q T0555 15 YAMKPGLSALEKNAVIKAAYRQIFER 40 (148)
Q Consensus 15 ~~l~~~~s~~e~~~vI~AaYrQVf~~ 40 (148)
+.+..+.+.+++...|..+|+.|...
T Consensus 93 V~ld~~v~~~el~~lI~~SY~LV~~K 118 (144)
T 2a1v_A 93 VTLDGTVPAELLGELLRGSYLLVTKK 118 (144)
T ss_dssp EECSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 87589999999999999999999753
No 9
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4), SOS2 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=33.00 E-value=25 Score=15.60 Aligned_cols=51 Identities=31% Similarity=0.414 Sum_probs=25.7
Q ss_pred HHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHH--CCCCCCCHHHHHHHH
Q ss_conf 7726887889999998425788872256687068999987775--078998988999999
Q T0555 56 QVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRHI--LGRGPSSREEVQKYF 113 (148)
Q Consensus 56 qlrnG~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~ 113 (148)
.=.+|.|+..||+.++.. +.........++.+|+.+ =|-.-.+..|+....
T Consensus 85 ~n~dG~I~f~EF~~~l~~-------~~~~~~~~e~~~~~F~~~D~d~~G~Is~~El~~~l 137 (207)
T 2ehb_A 85 VKRNGVIEFGEFVRSLGV-------FHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMV 137 (207)
T ss_dssp TTCSSEECHHHHHHHHGG-------GSTTSCHHHHHHHHHHHHCTTCCSSEEHHHHHHHH
T ss_pred CCCCCCEEHHHHHHHHHH-------HHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 799983829999988886-------40147889999998860675799983599999999
No 10
>3c1v_A Protein S100-A4; Ca2+-bound, calcium-bound, calcium binding protein; 1.50A {Homo sapiens} SCOP: a.39.1.2 PDB: 1m31_A 2q91_A 3cga_A
Probab=31.93 E-value=26 Score=15.49 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCH
Q ss_conf 8988899999999898840000002100015678877268878899999984257888722566870
Q T0555 21 LSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFIN 87 (148)
Q Consensus 21 ~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f~~~~~~ 87 (148)
.|.+|+..+++.-.........-+.+-+++...--.=.+|.|+-.||+.-+++--.--..+|...++
T Consensus 41 Ls~~Elk~lL~~~~~~~~~~~~d~~~v~~i~~~~D~d~DG~IdF~EF~~lm~~la~~~~~~~~~~~~ 107 (113)
T 3c1v_A 41 LNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPD 107 (113)
T ss_dssp ECHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred ECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8599999999985052357789999999999998389999796999999999999999999883965
No 11
>2rgi_A Protein S100-A2, protein S-100L; alpha helical, EF-hand, metal binding protein; 1.60A {Homo sapiens}
Probab=31.76 E-value=16 Score=16.81 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 8988899999999898840000002100015678877268878899999984257888722566
Q T0555 21 LSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEP 84 (148)
Q Consensus 21 ~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f~~~ 84 (148)
.|..|+..+++.-.-..+++...+.+-+++...--.=.+|.|+-.||+.-+++-..--..+|..
T Consensus 30 Lsk~Elk~ll~~e~~~~~~~~~~~~~i~~~~~~lD~n~Dg~IdF~EF~~l~~~l~~~~h~~~~~ 93 (98)
T 2rgi_A 30 LSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALITVMSNDFFQG 93 (98)
T ss_dssp EEHHHHHHHHHHHSCCSCSTTSCHHHHHHHHHHHHHTTTSEECHHHHHHHHHHHHHHHCHHHHT
T ss_pred ECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8799999999986130145669999999999986689999796999999999999999999985
No 12
>1aui_B Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: a.39.1.5 PDB: 1m63_B* 1tco_B* 1mf8_B* 2p6b_B
Probab=29.64 E-value=28 Score=15.24 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=49.5
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHH-CCH-HCHHH-------------HHHHHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 7762465789898889999999989884-000-00021-------------00015678877268878899999984257
Q T0555 11 KRQKYAMKPGLSALEKNAVIKAAYRQIF-ERD-ITKAY-------------SQSISYLESQVRNGDISMKEFVRRLAKSP 75 (148)
Q Consensus 11 ~~~~~~l~~~~s~~e~~~vI~AaYrQVf-~~~-~~~~~-------------s~r~~~lESqlrnG~IsVreFVr~la~S~ 75 (148)
.+-|.++....|++++..+ +.+++..= .++ .+... .+++...=..-.+|.|+-.||++.++.-
T Consensus 4 ~~~~~~~~~~ft~eei~~L-~~~F~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~l~~~~D~~~~g~I~~~eFl~~~~~~- 81 (169)
T 1aui_B 4 ASYPLEMCSHFDADEIKRL-GKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQF- 81 (169)
T ss_dssp -CCCCCCCCSCCHHHHHHH-HHHHHHHCTTCCSEECHHHHTTSHHHHTCTTHHHHHHHHCTTCSSSEEHHHHHHHHGGG-
T ss_pred CCHHHHHCCCCCHHHHHHH-HHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC-
T ss_conf 2012877289999999999-99999978999797969999988752588799999998652799863026654454201-
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHH
Q ss_conf 88872256687068999987775--07899898899999999871
Q T0555 76 LYRKQFFEPFINSRALELAFRHI--LGRGPSSREEVQKYFSIVSS 118 (148)
Q Consensus 76 ~yr~~f~~~~~~~r~iEl~~khl--LGR~p~~~~Ei~~~~~i~a~ 118 (148)
-........+..+|+.+ =|....+.+|+.........
T Consensus 82 ------~~~~~~~~~~~~~f~~~D~d~~G~Is~~el~~~l~~~~~ 120 (169)
T 1aui_B 82 ------SVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVG 120 (169)
T ss_dssp ------CTTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHT
T ss_pred ------CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
T ss_conf ------124425778999999845478996539999999998616
No 13
>1kso_A S-100E protein, S100 calcium-binding protein A3; S100,EF-hand,Ca2+ binding protein,Zn2+ binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.2
Probab=29.31 E-value=28 Score=15.20 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCC
Q ss_conf 898889999999989884000000210001567887726887889999998425788872256
Q T0555 21 LSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFE 83 (148)
Q Consensus 21 ~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f~~ 83 (148)
.|..|+..+++....-...+..-..+-..+...--.=.+|.|+-.||+..+++--..-..++.
T Consensus 29 Ls~~Elk~ll~~~~~~~~~~~~~~~~v~~~~~~~D~n~DG~IdF~EF~~l~~~l~~~~~~~~~ 91 (101)
T 1kso_A 29 LCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCHEYFK 91 (101)
T ss_dssp EEHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHCGGGT
T ss_pred ECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 879999999998601035666999999999999758999979699999999999999999997
No 14
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=26.25 E-value=32 Score=14.86 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=24.4
Q ss_pred HHCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 0000210001567887726887889999998
Q T0555 41 DITKAYSQSISYLESQVRNGDISMKEFVRRL 71 (148)
Q Consensus 41 ~~~~~~s~r~~~lESqlrnG~IsVreFVr~l 71 (148)
+.-+.-+++...+--.|.+|.|++.||...|
T Consensus 22 ~~~pe~~~~Vr~LV~~L~~~~i~~EeF~~~L 52 (105)
T 2h7b_A 22 DISPEIGERVRTLVLGLVNSTLTIEEFHSKL 52 (105)
T ss_dssp HHCHHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 6881888999999999981887899999999
No 15
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=25.87 E-value=33 Score=14.81 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 0021000156788772688788999999842578887225668
Q T0555 43 TKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPF 85 (148)
Q Consensus 43 ~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f~~~~ 85 (148)
.+.-+++...|--.|.+|.|++.||...| ++-..+.+-
T Consensus 39 ~pe~~~~Vr~LV~~L~~~~i~~EEF~~~L-----q~~lnsspq 76 (114)
T 2p6v_A 39 STETAANVXELVQNLLDGXIEAEDFTSRL-----YRELNSSPQ 76 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHH-----HHHTTCCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHCCCCC
T ss_conf 81789999999999997447899999999-----999758997
No 16
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding protein; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi}
Probab=25.69 E-value=16 Score=16.85 Aligned_cols=28 Identities=21% Similarity=0.536 Sum_probs=20.1
Q ss_pred CHHHHHHHCCCHHHH----HCCCCCCCCCCCC
Q ss_conf 224566533857888----5078657888899
Q T0555 121 LPALVDALVDSQEYA----DYFGEETVPYLRG 148 (148)
Q Consensus 121 ~~a~Id~lidS~EY~----~~FG~d~VPY~RG 148 (148)
++..|+.|..|.||. +.||.|..||.-|
T Consensus 195 in~~l~~l~~~G~~~~I~~ky~g~d~~~~~~~ 226 (232)
T 3i6v_A 195 FDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHCTTSCCCC--
T ss_pred HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999969199999998779985647887
No 17
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A*
Probab=25.37 E-value=33 Score=14.75 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCH
Q ss_conf 98988899999999898840000002100015678877268878899999984257
Q T0555 20 GLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSP 75 (148)
Q Consensus 20 ~~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~ 75 (148)
+.++ +.-..|+.+||.+|-...-+ ++++..+|.++... --+++|+.-+..|+
T Consensus 201 ~~~~-~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~f~~~s~ 252 (259)
T 3hsq_A 201 GFSP-EVRNAIKHAYKVIYHSGIST--RKALDELEASGNLI-EQVKYIIKFFRDSD 252 (259)
T ss_dssp TCCH-HHHHHHHHHHHHHHSSSSCH--HHHHHHHHTTCCCC-HHHHHHHHHHHHCS
T ss_pred CCCH-HHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHCCCC-HHHHHHHHHHHCCC
T ss_conf 9999-99999999999997179989--99999998635798-99999999997188
No 18
>2ggm_A Centrin-2; EF-hand superfamily, DNA repair complex, cell cycle; 2.35A {Homo sapiens} SCOP: a.39.1.5 PDB: 1zmz_A 2ami_A
Probab=25.35 E-value=19 Score=16.32 Aligned_cols=19 Identities=11% Similarity=0.436 Sum_probs=14.4
Q ss_pred HHHHCCCCCHHHHHHHHHC
Q ss_conf 8772688788999999842
Q T0555 55 SQVRNGDISMKEFVRRLAK 73 (148)
Q Consensus 55 SqlrnG~IsVreFVr~la~ 73 (148)
..-.+|.|+..+|+..+..
T Consensus 77 d~~~~~~I~~~eF~~~~~~ 95 (172)
T 2ggm_A 77 DKEGTGKMNFGDFLTVMTQ 95 (172)
T ss_dssp TTTCCSEEEHHHHHHHHHH
T ss_pred CCCCCCEEECHHHHHHHHH
T ss_conf 5678973500789999999
No 19
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=25.13 E-value=18 Score=16.52 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=13.8
Q ss_pred HCCCCCHHHHHHHHHCC
Q ss_conf 26887889999998425
Q T0555 58 RNGDISMKEFVRRLAKS 74 (148)
Q Consensus 58 rnG~IsVreFVr~la~S 74 (148)
.+|.|+..||++.++..
T Consensus 74 ~~g~I~~~eF~~~~~~~ 90 (202)
T 2bec_A 74 GSQRVDFPGFVRVLAHF 90 (202)
T ss_dssp SCCCCCHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 78875499999999886
No 20
>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} SCOP: b.52.2.3 c.37.1.20 d.31.1.1 PDB: 1s3s_A* 2pjh_B
Probab=24.92 E-value=34 Score=14.70 Aligned_cols=51 Identities=6% Similarity=-0.155 Sum_probs=24.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH-HHHHHCC
Q ss_conf 722566870689999877750789989889999999987168224-5665338
Q T0555 79 KQFFEPFINSRALELAFRHILGRGPSSREEVQKYFSIVSSGGLPA-LVDALVD 130 (148)
Q Consensus 79 ~~f~~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a-~Id~lid 130 (148)
+...-+.++...-+..+++++..-+.....-. -...-.+.||.+ .|.++++
T Consensus 365 ~~I~i~~Pd~~~R~~IL~~~l~~~~l~~dvdl-~~lA~~T~G~sgaDL~~lv~ 416 (458)
T 1e32_A 365 REVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANETHGHVGADLAALCS 416 (458)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTTSCBCTTCCH-HHHHHHCTTCCHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHCCCCCHHHHHHHHH
T ss_conf 17988998999999999998668999987799-99998679989999999999
No 21
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=24.08 E-value=35 Score=14.60 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHCCCCCHHHHHHHHHCCHHHHHHC--CCCCCH--HHHH--HHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 7268878899999984257888722--566870--6899--99877750789989889999999987168
Q T0555 57 VRNGDISMKEFVRRLAKSPLYRKQF--FEPFIN--SRAL--ELAFRHILGRGPSSREEVQKYFSIVSSGG 120 (148)
Q Consensus 57 lrnG~IsVreFVr~la~S~~yr~~f--~~~~~~--~r~i--El~~khlLGR~p~~~~Ei~~~~~i~a~~G 120 (148)
=.+|.|+..||+....+-...++-| |+...+ .-.- ..+++. +|-. .+.+++...+......|
T Consensus 85 d~~G~i~f~EF~~l~~~~~~~~~~F~~~D~d~sG~I~~~El~~al~~-~g~~-ls~~~~~~l~~~~d~~~ 152 (198)
T 1juo_A 85 DMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTT-MGFR-LSPQAVNSIAKRYSTNG 152 (198)
T ss_dssp TCSSCEEHHHHHHHHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHH-TTCC-CCHHHHHHHHHHTCSSS
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHH-HCCC-CCHHHHHHHHHHHCCCC
T ss_conf 99981809999999999999999999858899986769999999998-0888-99999999999848899
No 22
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=23.89 E-value=32 Score=14.83 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.8
Q ss_pred HCCCCCHHHHHHHHHCCH
Q ss_conf 268878899999984257
Q T0555 58 RNGDISMKEFVRRLAKSP 75 (148)
Q Consensus 58 rnG~IsVreFVr~la~S~ 75 (148)
.+|.|+.+||+..++.+.
T Consensus 21 ~dg~idf~eF~~~~~~~~ 38 (110)
T 1pva_A 21 AEGSFNHKKFFALVGLKA 38 (110)
T ss_dssp STTCCCHHHHHHHHTCTT
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 999887999999998614
No 23
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=23.12 E-value=32 Score=14.85 Aligned_cols=29 Identities=10% Similarity=0.293 Sum_probs=21.5
Q ss_pred HCCCCCHHHHHHHHHCCHHHHHHCCCCCCH
Q ss_conf 268878899999984257888722566870
Q T0555 58 RNGDISMKEFVRRLAKSPLYRKQFFEPFIN 87 (148)
Q Consensus 58 rnG~IsVreFVr~la~S~~yr~~f~~~~~~ 87 (148)
.++.+||.++.++++.++ |...|-+....
T Consensus 4 ~~~~~sV~~WL~~lgL~~-Y~~~F~~~gi~ 32 (81)
T 1ucv_A 4 GSSGLTVGDWLDSIRMGR-YRDHFAAGGYS 32 (81)
T ss_dssp CCCCSBHHHHHHHTTCGG-GHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHCCCHH-HHHHHHHHCCC
T ss_conf 999870999998886099-99999980978
No 24
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=22.24 E-value=38 Score=14.36 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHHHCCH
Q ss_conf 98889999999989884000
Q T0555 22 SALEKNAVIKAAYRQIFERD 41 (148)
Q Consensus 22 s~~e~~~vI~AaYrQVf~~~ 41 (148)
|.+++.. |++||++.|+++
T Consensus 122 sn~ei~~-ik~aY~~~y~~~ 140 (672)
T 1m9i_A 122 TNEQMHQ-LVAAYKDAYERD 140 (672)
T ss_dssp CHHHHHH-HHHHHHHHSCSC
T ss_pred CHHHHHH-HHHHHHHHHCCC
T ss_conf 9999999-999999997778
No 25
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=20.98 E-value=40 Score=14.20 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=17.7
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 877750789989889999999987168224
Q T0555 94 AFRHILGRGPSSREEVQKYFSIVSSGGLPA 123 (148)
Q Consensus 94 ~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a 123 (148)
.|.+.+||++ ++.|+......+.+-|+..
T Consensus 9 ~~e~~fGr~l-s~~e~e~i~~w~~~~~~~~ 37 (78)
T 2zc2_A 9 DFERELGRML-SPFELEDLQKTVSDDKTDP 37 (78)
T ss_dssp HHHHHHTSCC-CHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHCCCC-CHHHHHHHHHHHHHHCCCH
T ss_conf 9999877999-9999999999998829999
No 26
>1or7_C Sigma-E factor negative regulatory protein, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.180.1.1
Probab=20.94 E-value=38 Score=14.39 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=30.0
Q ss_pred HHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 88772688788999999842578887225668706899998777
Q T0555 54 ESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRH 97 (148)
Q Consensus 54 ESqlrnG~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~kh 97 (148)
=|-|.+|+++--|+++.|.+++.-+.. |.. |..|--..+.
T Consensus 6 lSAL~DGEl~~~el~~~l~~d~e~~~~-W~~---YhlI~d~lr~ 45 (90)
T 1or7_C 6 LSALMDGETLDSELLNELAHNPEMQKT-WES---YHLIRDSMRG 45 (90)
T ss_dssp HHHHHTTSCCCHHHHHHHHTCHHHHHH-HHH---HHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHCCHHHHHH-HHH---HHHHHHHHHC
T ss_conf 999993898749999998759999999-999---9999999966
No 27
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein structure initiative, MCSG, structural genomics; HET: MSE; 2.01A {Streptococcus pneumoniae TIGR4}
Probab=20.54 E-value=37 Score=14.49 Aligned_cols=36 Identities=14% Similarity=0.466 Sum_probs=25.9
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999998425788872256687068999987775078
Q T0555 65 KEFVRRLAKSPLYRKQFFEPFINSRALELAFRHILGR 101 (148)
Q Consensus 65 reFVr~la~S~~yr~~f~~~~~~~r~iEl~~khlLGR 101 (148)
+|++++...++-|++-||..+-+.. +.--.|.+||+
T Consensus 181 ~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~ 216 (216)
T 2ppw_A 181 QDFLKDTISGKYFQEYFFENCQDDE-VAAYLKEVLAK 216 (216)
T ss_dssp HHHHHHHSCSHHHHHHHHHHCCCHH-HHHHHHC----
T ss_pred HHHHHHHHCCHHHHHHHHHHCCHHH-HHHHHHHHHCC
T ss_conf 9999988644458999998188089-99999998549
No 28
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Probab=20.38 E-value=42 Score=14.12 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=20.6
Q ss_pred CHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 5788872256687068999987775078998988
Q T0555 74 SPLYRKQFFEPFINSRALELAFRHILGRGPSSRE 107 (148)
Q Consensus 74 S~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~~ 107 (148)
.+.||+.++.+-. .+--.-.++.||||+|...+
T Consensus 623 G~~~r~~iL~~Gg-s~~~~e~~~~f~Gr~p~~~a 655 (674)
T 2o36_A 623 GMDYRSCILRPGG-SEDASAMLRRFLGRDPKQDA 655 (674)
T ss_dssp HHHHHHHTTTTGG-GSCHHHHHHHHHSSCCCSHH
T ss_pred HHHHHHHHHCCCC-CCCHHHHHHHHCCCCCCHHH
T ss_conf 9999999703679-81899999982599998169
Done!