Query T0555 SgR209C, , 148 residues
Match_columns 148
No_of_seqs 110 out of 283
Neff 4.5
Searched_HMMs 11830
Date Fri May 21 18:07:06 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0555.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/hhm/T0555.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00427 PBS_linker_poly: Phyc 100.0 0 0 378.0 13.9 131 17-148 1-131 (131)
2 PF07583 PSCyt2: Protein of un 91.6 0.06 5.1E-06 30.8 3.3 48 91-139 28-75 (208)
3 PF07624 PSD2: Protein of unkn 81.8 0.74 6.2E-05 23.7 4.2 49 30-78 28-76 (76)
4 PF07587 PSD1: Protein of unkn 57.4 3.7 0.00031 19.2 3.2 92 26-119 19-124 (266)
5 PF01450 IlvC: Acetohydroxy ac 41.9 4.3 0.00037 18.7 1.5 63 72-135 5-75 (145)
6 PF09824 ArsR: ArsR transcript 37.2 11 0.00094 16.0 3.3 55 21-81 87-141 (160)
7 PF10216 ChpXY: CO2 hydration 36.0 12 0.00098 15.9 4.2 86 17-137 11-108 (353)
8 PF05120 GvpG: Gas vesicle pro 30.0 15 0.0012 15.3 4.5 42 26-70 16-57 (80)
9 PF07531 TAFH: NHR1 homology t 29.7 15 0.0012 15.2 2.9 30 42-71 21-50 (96)
10 PF06464 DMAP_binding: DMAP1-b 29.4 14 0.0011 15.5 2.4 26 46-71 9-34 (111)
11 PF05598 DUF772: Transposase d 24.3 18 0.0016 14.6 4.1 20 101-120 48-67 (77)
12 PF04858 TH1: TH1 protein; In 22.1 20 0.0017 14.3 4.9 49 63-113 135-186 (584)
13 PF12408 DUF3666: Ribose-5-pho 21.5 21 0.0018 14.3 3.0 27 65-91 16-42 (48)
No 1
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 The phycobilisome linker polypeptide determines the state of aggregation and the location of the disc-shaped phycobiliprotein units within the phycobilisome and modulates their spectroscopic properties in order to mediate a directed and optimal energy transfer. The phycobilisome is a hemidiscoidal structure that is composed of two distinct substructures, a core complex (that contains the phycobiliproteins) and a number of rods radiating from the core. The linker polypeptide is also found in the chloroplast of some eukaryotes where it is required for attachment of phycocyanin to allophycocyanin in the core of the phycobilisome.; GO: 0015979 photosynthesis, 0030089 phycobilisome
Probab=100.00 E-value=0 Score=378.03 Aligned_cols=131 Identities=55% Similarity=0.897 Sum_probs=128.2
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 57898988899999999898840000002100015678877268878899999984257888722566870689999877
Q T0555 17 MKPGLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFR 96 (148)
Q Consensus 17 l~~~~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl~~k 96 (148)
|+|+.|+++++.||+|||||||||++.| +++|++++|||||||+||||||||+||||++||++||++++|||+||++||
T Consensus 1 ~~~~~s~~~~~~vI~AaYrQVfgn~~~~-~~eRl~~~ES~Lrng~IsvreFVr~La~S~~yr~~f~~~~~~~R~iEl~~k 79 (131)
T PF00427_consen 1 MRPNASESELEEVIRAAYRQVFGNDHPM-ESERLTSLESQLRNGDISVREFVRGLAKSDLYRKRFFEPNSNYRAIELAFK 79 (131)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999999999999999996575314-543020499998869982999999997569999987026660189999998
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCCCCCCCCCC
Q ss_conf 7507899898899999999871682245665338578885078657888899
Q T0555 97 HILGRGPSSREEVQKYFSIVSSGGLPALVDALVDSQEYADYFGEETVPYLRG 148 (148)
Q Consensus 97 hlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG~d~VPY~RG 148 (148)
|||||||+|++|+++|++|++++|++|+||+||||+||.++||+|||||+||
T Consensus 80 hlLGR~~~~~~Ei~~~~~i~a~~G~~a~Id~lldS~EY~~~FG~d~VPy~R~ 131 (131)
T PF00427_consen 80 HLLGRAPYNQAEISAYSIILAEQGFEAFIDSLLDSDEYLENFGEDTVPYQRG 131 (131)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHCCCCCCCCCCC
T ss_conf 8728899999999999999992380999999968799998759988997889
No 2
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 This domain is found in a family of paralogues in the planctomycetes. The function is not known. It is found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=91.58 E-value=0.06 Score=30.81 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCC
Q ss_conf 9998777507899898899999999871682245665338578885078
Q T0555 91 LELAFRHILGRGPSSREEVQKYFSIVSSGGLPALVDALVDSQEYADYFG 139 (148)
Q Consensus 91 iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~FG 139 (148)
+-=.+--|.|++|. .+|+.++..--+..-++..||.||.|++|.+.++
T Consensus 28 lRRv~lDL~Gl~Pt-~eEv~~Fl~d~s~~~~~~lVD~LLasp~y~e~wa 75 (208)
T PF07583_consen 28 LRRVYLDLTGLPPT-PEEVRAFLADQSPDKREKLVDRLLASPHYGERWA 75 (208)
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999998079959-9999999857985799999999977808999999
No 3
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C-terminus of a family of cytochrome-like proteins in Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=81.78 E-value=0.74 Score=23.71 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHH
Q ss_conf 9999898840000002100015678877268878899999984257888
Q T0555 30 IKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYR 78 (148)
Q Consensus 30 I~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr 78 (148)
++.-+.=-+||.....+...+..+..+++.+.-+++++|.+|..|+.||
T Consensus 28 ~~kl~~YAlGR~~~~~D~~~i~~i~~~~~~~~y~~~~Li~~iV~S~~Fr 76 (76)
T PF07624_consen 28 AEKLLTYALGRPLEFSDRCEIDAIVEAFKANGYRLRDLILAIVTSDAFR 76 (76)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 9999999838999811199999999999886998999999997584679
No 4
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR011444 This domain is found in a family of paralogues in the planctomycetes. The function is not known. It is found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=57.39 E-value=3.7 Score=19.17 Aligned_cols=92 Identities=15% Similarity=0.281 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHCCHHCHHH------------HHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCCCCCHHHHHHH
Q ss_conf 999999998988400000021------------00015678877268878899999984257888722566870689999
Q T0555 26 KNAVIKAAYRQIFERDITKAY------------SQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALEL 93 (148)
Q Consensus 26 ~~~vI~AaYrQVf~~~~~~~~------------s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f~~~~~~~r~iEl 93 (148)
-.++++-...+.||+-++.-- -+-|..|...|....-++|.+||.|+.|+.|++.=-..-.+ ..+.
T Consensus 19 aRviVNRvW~~~fGrGiV~pvdDfg~~g~~PshPeLLD~La~~F~~~g~dlK~L~R~I~~S~tYq~sS~~~~~~-~~~d- 96 (266)
T PF07587_consen 19 ARVIVNRVWQHLFGRGIVEPVDDFGSQGNPPSHPELLDWLAQEFVDHGWDLKRLIRLIVLSRTYQQSSQPNEEN-LEID- 96 (266)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCHH-HCCC-
T ss_conf 99999999999809867389655558899999989999999999986999999999998559884868688022-0469-
Q ss_pred HHHHHCCCCCCC--HHHHHHHHHHHHHC
Q ss_conf 877750789989--88999999998716
Q T0555 94 AFRHILGRGPSS--REEVQKYFSIVSSG 119 (148)
Q Consensus 94 ~~khlLGR~p~~--~~Ei~~~~~i~a~~ 119 (148)
--.+++.|++-- .+|.+.-+.+.++.
T Consensus 97 p~n~~~~~~~~rRL~AE~irDsil~~sg 124 (266)
T PF07587_consen 97 PDNRLFARFPRRRLSAEQIRDSILQASG 124 (266)
T ss_pred CCCHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 7553125799928899999999999987
No 5
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine . The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor. ; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process; PDB: 1yrl_C 1yve_J 1qmg_C 3fr7_A 3fr8_A 1np3_A.
Probab=41.88 E-value=4.3 Score=18.70 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=35.2
Q ss_pred HCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCH--------HHHHHHHHHHHHCCCHHHHHHHCCCHHHH
Q ss_conf 42578887225668706899998777507899898--------89999999987168224566533857888
Q T0555 72 AKSPLYRKQFFEPFINSRALELAFRHILGRGPSSR--------EEVQKYFSIVSSGGLPALVDALVDSQEYA 135 (148)
Q Consensus 72 a~S~~yr~~f~~~~~~~r~iEl~~khlLGR~p~~~--------~Ei~~~~~i~a~~G~~a~Id~lidS~EY~ 135 (148)
..||+|-.+-.=+-.-.-.|+.+|.+|. ++=+++ .|+---..+++++|+..+.+++=|..||-
T Consensus 5 ~~sDLfGEq~vL~Gg~~~lv~~~Fe~Lv-eaG~~pE~Ay~e~~~e~klI~dli~~~Gi~~M~~~iS~TAeyG 75 (145)
T PF01450_consen 5 TESDLFGEQAVLCGGVHALVEAGFETLV-EAGYSPEMAYFECLHETKLIVDLIYEGGIAGMYDSISDTAEYG 75 (145)
T ss_dssp HHHHH---TTTTHHHHHHHHHHHHHHHH-H----HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCC
T ss_conf 8876431169999899999999999999-8599889999999999999999999876999998658798722
No 6
>PF09824 ArsR: ArsR transcriptional regulator
Probab=37.19 E-value=11 Score=16.03 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHC
Q ss_conf 8988899999999898840000002100015678877268878899999984257888722
Q T0555 21 LSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQF 81 (148)
Q Consensus 21 ~s~~e~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~la~S~~yr~~f 81 (148)
.|-+|+..+|.++ |-++- .-++-...+|....+|.+++-+..|.++.|.+|-+..
T Consensus 87 ~s~~dLsdii~i~----~~sde--el~~~~~~ie~~i~~g~~si~dlsr~~g~sp~~irgi 141 (160)
T PF09824_consen 87 CSMSDLSDIIYIT----FMSDE--ELRDYEEKIEAEIENGNTSIGDLSRKLGISPTFIRGI 141 (160)
T ss_pred ECHHHHHHHHHHH----HCCHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 6298998778642----24878--8999999999999859821899998818789999999
No 7
>PF10216 ChpXY: CO2 hydration protein (ChpXY)
Probab=36.02 E-value=12 Score=15.91 Aligned_cols=86 Identities=24% Similarity=0.393 Sum_probs=53.4
Q ss_pred ECCCCCHHHHHHH--HHHHHHHHHCCHHCHHHHH-HHHHHHHHHH---------CCCCCHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 5789898889999--9999898840000002100-0156788772---------68878899999984257888722566
Q T0555 17 MKPGLSALEKNAV--IKAAYRQIFERDITKAYSQ-SISYLESQVR---------NGDISMKEFVRRLAKSPLYRKQFFEP 84 (148)
Q Consensus 17 l~~~~s~~e~~~v--I~AaYrQVf~~~~~~~~s~-r~~~lESqlr---------nG~IsVreFVr~la~S~~yr~~f~~~ 84 (148)
|-|+ |.+.+-+| |-.+|--|+.- .|. -+--+|.||. ||++++....+-+ |.-
T Consensus 11 lL~D-tp~nlleVVgilksYgvvlDa-----YsrnL~yiae~qFL~~fP~FKyF~Ge~~~~kLl~Hl----------~hD 74 (353)
T PF10216_consen 11 LLPD-TPDNLLEVVGILKSYGVVLDA-----YSRNLLYIAERQFLNPFPFFKYFNGEISLPKLLHHL----------WHD 74 (353)
T ss_pred CCCC-CHHHHHHHHHHHHHHCCHHHH-----HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHH----------HHC
T ss_conf 6899-758799999999874102998-----888899999866303225877717887889999997----------311
Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHC
Q ss_conf 87068999987775078998988999999998716822456653385788850
Q T0555 85 FINSRALELAFRHILGRGPSSREEVQKYFSIVSSGGLPALVDALVDSQEYADY 137 (148)
Q Consensus 85 ~~~~r~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~G~~a~Id~lidS~EY~~~ 137 (148)
--|+.+.|.|-|..+=- .. +-.|+++||+||.++
T Consensus 75 RIN~EyAEyCmkaM~WH---------------g~----GglDaYLDs~ef~~~ 108 (353)
T PF10216_consen 75 RINFEYAEYCMKAMFWH---------------GG----GGLDAYLDSEEFKEN 108 (353)
T ss_pred HHHHHHHHHHHHHHHCC---------------CC----CCCCCCCCCHHHHHH
T ss_conf 10159999999987516---------------77----885521288999999
No 8
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles .
Probab=30.02 E-value=15 Score=15.28 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 999999998988400000021000156788772688788999999
Q T0555 26 KNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRR 70 (148)
Q Consensus 26 ~~~vI~AaYrQVf~~~~~~~~s~r~~~lESqlrnG~IsVreFVr~ 70 (148)
.+.|.++|=+|...-.- -..++..++-+|..|+||-.+|-+.
T Consensus 16 ae~I~~~Ae~e~~D~~~---i~~~L~~L~~~~e~GEIseEEf~~~ 57 (80)
T PF05120_consen 16 AEQIQEQAERELYDPAA---IRRQLAELQLALEMGEISEEEFDRR 57 (80)
T ss_pred HHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999998658899---9999999999988599988999989
No 9
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO , . The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain . The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 . ; GO: 0003700 transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2h7b_A 2pp4_A 2p6v_A.
Probab=29.71 E-value=15 Score=15.25 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.1
Q ss_pred HCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 000210001567887726887889999998
Q T0555 42 ITKAYSQSISYLESQVRNGDISMKEFVRRL 71 (148)
Q Consensus 42 ~~~~~s~r~~~lESqlrnG~IsVreFVr~l 71 (148)
..+.-+++...+--.|.+|.|++-||...|
T Consensus 21 ~~pev~~~Vr~LV~~L~~~~i~~EeF~~~L 50 (96)
T PF07531_consen 21 QSPEVGERVRELVQGLVNGKIEAEEFTSRL 50 (96)
T ss_dssp S-CHHHHHHHHHHHHHCTSSS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 871788999999999982788899999999
No 10
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=29.38 E-value=14 Score=15.47 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 10001567887726887889999998
Q T0555 46 YSQSISYLESQVRNGDISMKEFVRRL 71 (148)
Q Consensus 46 ~s~r~~~lESqlrnG~IsVreFVr~l 71 (148)
-..+|..|+-.+.+|+||-+++...-
T Consensus 9 v~~~L~~L~~e~~~GdiT~KGY~kkr 34 (111)
T PF06464_consen 9 VRERLKELDLELSEGDITEKGYEKKR 34 (111)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999987411422099999999
No 11
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This family consists of several proteins from Sulfolobus solfataricus described as first ORF in transposon ISC1212.
Probab=24.29 E-value=18 Score=14.62 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHHHHCC
Q ss_conf 89989889999999987168
Q T0555 101 RGPSSREEVQKYFSIVSSGG 120 (148)
Q Consensus 101 R~p~~~~Ei~~~~~i~a~~G 120 (148)
.++-+.+-+..+-..+...|
T Consensus 48 ~~~pd~stl~rfr~rl~~~~ 67 (77)
T PF05598_consen 48 EPVPDHSTLSRFRKRLIEHG 67 (77)
T ss_pred CCCCCHHHHHHHHHHHHHCC
T ss_conf 57998279999999986720
No 12
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans . TH1 binds specifically to A-Raf kinase .; GO: 0016481 negative regulation of transcription, 0005634 nucleus
Probab=22.07 E-value=20 Score=14.34 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=29.3
Q ss_pred CHHHHHHHHHCCHHHHHHCC---CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 88999999842578887225---6687068999987775078998988999999
Q T0555 63 SMKEFVRRLAKSPLYRKQFF---EPFINSRALELAFRHILGRGPSSREEVQKYF 113 (148)
Q Consensus 63 sVreFVr~la~S~~yr~~f~---~~~~~~r~iEl~~khlLGR~p~~~~Ei~~~~ 113 (148)
..-+++-.+-+|+..|+.+| +.++++.+.-.+.|++--+. + +.|+..-+
T Consensus 135 ~~p~WL~~mi~~~~WR~liy~Lae~~p~cl~l~~~ik~i~dag-~-q~ei~sis 186 (584)
T PF04858_consen 135 EPPEWLDEMIESPTWRSLIYKLAERNPDCLFLNFAIKLISDAG-Y-QHEITSIS 186 (584)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-H-HHHHHHHH
T ss_conf 9816899987084899999999986899779999999987611-2-78887699
No 13
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; PDB: 3c5y_N 2ppw_A.
Probab=21.54 E-value=21 Score=14.27 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=21.2
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCHHHHH
Q ss_conf 999999842578887225668706899
Q T0555 65 KEFVRRLAKSPLYRKQFFEPFINSRAL 91 (148)
Q Consensus 65 reFVr~la~S~~yr~~f~~~~~~~r~i 91 (148)
+|+|++-..++-|++-||.++-.-...
T Consensus 16 qdlvK~AvsGe~Fqe~FF~Ncq~~eI~ 42 (48)
T PF12408_consen 16 QDLVKTAVSGERFQECFFANCQDEEIA 42 (48)
T ss_dssp HHHHHHHC---HHHHHHCCC---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999998823398999988428808999
Done!