Query T0556 HR4435B, , 73 residues
Match_columns 73
No_of_seqs 8 out of 10
Neff 1.6
Searched_HMMs 22458
Date Tue May 25 15:42:12 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0556.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0556.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ict_A Antitoxin HIGA; helix-t 88.4 0.3 1.3E-05 27.5 3.3 52 9-60 6-61 (94)
2 3cec_A Putative antidote prote 85.2 0.47 2.1E-05 26.4 2.9 42 12-53 19-62 (104)
3 3b7h_A Prophage LP1 protein 11 81.0 1.5 6.5E-05 23.8 4.0 51 10-60 6-61 (78)
4 3bd1_A CRO protein; transcript 78.5 1.8 7.9E-05 23.3 3.8 36 23-61 12-47 (79)
5 1zug_A Phage 434 CRO protein; 76.9 1.5 6.6E-05 23.7 3.0 39 9-47 1-41 (71)
6 3g5g_A Regulatory protein; tra 76.1 2.4 0.00011 22.6 3.9 46 9-54 26-73 (99)
7 2eby_A Putative HTH-type trans 73.7 2.4 0.00011 22.7 3.4 36 17-52 17-54 (113)
8 2jvl_A TRMBF1; coactivator, he 72.6 0.65 2.9E-05 25.7 0.3 44 10-53 33-80 (107)
9 1r69_A Repressor protein CI; g 67.2 3.7 0.00016 21.6 3.2 36 12-47 2-39 (69)
10 3kxa_A NGO0477 protein, putati 65.4 2.5 0.00011 22.5 2.1 41 20-60 79-121 (141)
11 1iuf_A Centromere ABP1 protein 62.9 1.3 5.8E-05 24.0 0.2 37 11-47 15-61 (144)
12 2a6c_A Helix-turn-helix motif; 62.2 7.3 0.00033 20.0 3.9 47 11-58 18-66 (83)
13 1x57_A Endothelial differentia 59.2 7.5 0.00033 20.0 3.6 42 11-52 13-56 (91)
14 2wiu_B HTH-type transcriptiona 59.0 9.7 0.00043 19.4 4.1 46 7-52 8-55 (88)
15 3f52_A CLP gene regulator (CLG 58.3 12 0.00053 18.9 6.0 48 11-60 28-81 (117)
16 1utx_A CYLR2; DNA-binding prot 57.3 3.6 0.00016 21.7 1.7 35 20-56 12-46 (66)
17 2b5a_A C.BCLI; helix-turn-heli 57.1 11 0.00049 19.1 4.1 44 10-53 9-54 (77)
18 3bdn_A Lambda repressor; repre 56.4 4.7 0.00021 21.1 2.1 27 22-48 30-56 (236)
19 1b0n_A Protein (SINR protein); 55.7 3.6 0.00016 21.7 1.5 41 20-60 12-55 (111)
20 3clc_A Regulatory protein; pro 55.5 13 0.00059 18.7 6.0 50 10-61 10-61 (82)
21 3eus_A DNA-binding protein; st 53.3 11 0.00047 19.2 3.6 47 11-59 14-62 (86)
22 3bs3_A Putative DNA-binding pr 52.8 11 0.00048 19.1 3.5 47 15-63 14-62 (76)
23 1adr_A P22 C2 repressor; trans 51.2 10 0.00044 19.3 3.1 45 9-53 3-49 (76)
24 3f6w_A XRE-family like protein 50.8 16 0.00071 18.2 5.8 47 11-59 14-62 (83)
25 2kpj_A SOS-response transcript 50.1 15 0.00066 18.4 3.9 41 11-51 9-51 (94)
26 2ofy_A Putative XRE-family tra 50.1 11 0.00049 19.1 3.2 43 12-55 17-59 (86)
27 2r1j_L Repressor protein C2; p 49.3 11 0.00048 19.2 3.1 41 12-52 6-48 (68)
28 3ivp_A Putative transposon-rel 46.6 19 0.00083 17.9 6.1 51 7-59 8-60 (126)
29 2fjr_A Repressor protein CI; g 45.3 17 0.00076 18.1 3.6 41 7-47 5-45 (189)
30 1lmb_3 Protein (lambda repress 44.1 20 0.00091 17.7 5.6 39 13-51 19-59 (92)
31 1y9q_A Transcriptional regulat 43.9 6.9 0.00031 20.2 1.4 42 11-52 11-54 (192)
32 3kz3_A Repressor protein CI; f 42.7 22 0.00096 17.5 6.2 38 22-61 25-62 (80)
33 1z05_A Transcriptional regulat 39.7 10 0.00044 19.3 1.7 27 23-49 54-80 (429)
34 2o38_A Hypothetical protein; a 35.2 24 0.0011 17.3 3.0 36 13-48 42-79 (120)
35 2bnm_A Epoxidase; oxidoreducta 34.7 13 0.00057 18.7 1.6 41 12-52 11-54 (198)
36 2ewt_A BLDD, putative DNA-bind 34.2 30 0.0013 16.8 3.6 47 12-60 9-59 (71)
37 2p5t_A Putative transcriptiona 32.1 7.4 0.00033 20.0 0.0 30 21-50 13-42 (158)
38 3mlf_A Transcriptional regulat 31.4 17 0.00074 18.1 1.7 33 20-52 34-66 (111)
39 1y7y_A C.AHDI; helix-turn-heli 30.9 17 0.00077 18.0 1.7 44 12-57 14-59 (74)
40 2ovg_A Phage lambda CRO; trans 30.4 25 0.0011 17.2 2.4 30 15-44 6-35 (66)
41 2p63_A Cell division control p 30.1 26 0.0011 17.1 2.5 32 5-36 19-50 (56)
42 2h8r_A Hepatocyte nuclear fact 29.7 36 0.0016 16.4 7.0 59 8-68 28-88 (221)
43 2pij_A Prophage PFL 6 CRO; tra 28.5 28 0.0012 17.0 2.4 29 15-43 5-34 (67)
44 2ef8_A C.ECOT38IS, putative tr 27.6 39 0.0017 16.2 4.4 51 11-61 10-64 (84)
45 1ub9_A Hypothetical protein PH 27.5 31 0.0014 16.7 2.5 59 10-68 15-93 (100)
46 2ppx_A AGR_C_3184P, uncharacte 25.9 23 0.001 17.4 1.7 39 15-53 34-74 (99)
47 1z91_A Organic hydroperoxide r 25.9 28 0.0012 17.0 2.0 40 2-45 38-77 (147)
48 2hsg_A Glucose-resistance amyl 25.2 44 0.0019 15.9 3.0 33 25-59 5-37 (332)
49 3g7d_A PHPD; non heme Fe(II) d 25.0 44 0.002 15.9 3.3 37 11-47 230-269 (443)
50 2qjz_A Microtubule-associated 21.9 35 0.0016 16.4 2.0 42 16-68 65-106 (123)
51 3i71_A Ethanolamine utilizatio 21.6 41 0.0018 16.1 2.2 19 5-23 28-46 (68)
52 3fmy_A HTH-type transcriptiona 21.0 25 0.0011 17.2 1.1 34 20-53 22-55 (73)
53 2r8u_A Microtubule-associated 20.0 41 0.0018 16.1 2.0 24 39-68 93-116 (268)
No 1
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=88.35 E-value=0.3 Score=27.45 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHH--HHHHH
Q ss_conf 37899999999986--205545543330388899886131000224888--89999
Q T0556 9 HTTVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANVSAAK--CQEFG 60 (73)
Q Consensus 9 h~tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyyanvsa~k--CqEFG 60 (73)
|...-..|++++++ |+|+.||+.+-.+++.||.|.|+....+...+. ++.||
T Consensus 6 ~~hpG~~Lk~~~~~~glsq~~lA~~lgvs~~~is~ie~G~~~~s~~~~~~la~~lg 61 (94)
T 2ict_A 6 HPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIG 61 (94)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 98988999999999699999999996877588999984643376999999999999
No 2
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=85.23 E-value=0.47 Score=26.43 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=34.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 9999999998--62055455433303888998861310002248
Q T0556 12 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 12 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
.-..|+++++ .++|+.||+.+-++++.||.|.|++-..+...
T Consensus 19 PGe~Lke~~~~~glsq~eLA~~lGis~~~is~ie~G~~~~s~e~ 62 (104)
T 3cec_A 19 PGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDI 62 (104)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 50999999998799899999996867999999982886787999
No 3
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=81.01 E-value=1.5 Score=23.79 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCHH-CCCC--HHHHHHHH
Q ss_conf 7899999999986--20554554333038889988613100-0224--88889999
Q T0556 10 TTVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYY-ANVS--AAKCQEFG 60 (73)
Q Consensus 10 ~tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyy-anvs--a~kCqEFG 60 (73)
..+...+++|.++ |+|..||+..-++++.||.|.|+... ..+. ..=|+-||
T Consensus 6 ~~i~~~l~~lr~~~g~s~~~LA~~~Gvs~~tis~ie~g~~~~p~~~~l~~ia~~l~ 61 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99999999999994998999999989299999999869989998999999999979
No 4
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=78.54 E-value=1.8 Score=23.34 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHHH
Q ss_conf 205545543330388899886131000224888899999
Q T0556 23 MNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGR 61 (73)
Q Consensus 23 mnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEFGr 61 (73)
.+|+.||+.|-.+|+.+|-..+. ..|++.+|...-+
T Consensus 12 G~q~~LAr~lGvsq~~Vs~W~~~---~~vp~~~~~~Ie~ 47 (79)
T 3bd1_A 12 GSVSALAASLGVRQSAISNWRAR---GRVPAERCIDIER 47 (79)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHH---TCCCGGGHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC---CCCCHHHHHHHHH
T ss_conf 89999999919989999998816---9899999999999
No 5
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=76.89 E-value=1.5 Score=23.74 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCH
Q ss_conf 37899999999986--2055455433303888998861310
Q T0556 9 HTTVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTY 47 (73)
Q Consensus 9 h~tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNsty 47 (73)
|.++..-++++.++ |+|..||+.+-++++.||.|.|+.-
T Consensus 1 M~~ig~rlk~~r~~~glsq~~lA~~~Gis~~~is~~e~g~~ 41 (71)
T 1zug_A 1 MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp CCSHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 94899999999998499999999997158999999987999
No 6
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=76.09 E-value=2.4 Score=22.61 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHH
Q ss_conf 3789999999998--620554554333038889988613100022488
Q T0556 9 HTTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAA 54 (73)
Q Consensus 9 h~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa~ 54 (73)
...+...++++-+ .|+|..||+.+-++++.|+.|-|+....++...
T Consensus 26 ~~~ig~~lk~lR~~~glSq~elA~~~gis~~~is~iE~G~~~ps~~~l 73 (99)
T 3g5g_A 26 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSL 73 (99)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 999999999999990999999999989599999999815789999999
No 7
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=73.67 E-value=2.4 Score=22.65 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=28.7
Q ss_pred HHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCC
Q ss_conf 99998--6205545543330388899886131000224
Q T0556 17 KDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS 52 (73)
Q Consensus 17 k~LLk--emnQStLakecpLsQSmiSsIVNstyyanvs 52 (73)
.|+|+ .|+|+-||+.+-++++.||.|+|+.---+..
T Consensus 17 ~e~l~~~glsq~eLA~~lGvs~~~is~i~~G~~~it~~ 54 (113)
T 2eby_A 17 YEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTE 54 (113)
T ss_dssp HHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHH
T ss_conf 99887679999999999599999999998287789999
No 8
>2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei}
Probab=72.61 E-value=0.65 Score=25.67 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 78999999999----862055455433303888998861310002248
Q T0556 10 TTVRNALKDLL----KDMNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 10 ~tVrnAlk~LL----kemnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
..+...++++- |.|+|..||..|-++++.||.|-|+....++..
T Consensus 33 ~~ig~~i~~~R~~~~kglTQ~eLA~~~gvs~~~is~~E~G~~~ps~~~ 80 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNI 80 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999999999999988699899999998988999999986997899999
No 9
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=67.23 E-value=3.7 Score=21.65 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.2
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCH
Q ss_conf 9999999998--62055455433303888998861310
Q T0556 12 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTY 47 (73)
Q Consensus 12 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNsty 47 (73)
+-.-++++.+ .|+|..||+.+-+++++|+.+.|+.-
T Consensus 2 ig~rlk~~r~~~~lsq~ela~~~gvs~~ti~~~e~g~~ 39 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCC
T ss_conf 89999999999499999997850989999999987999
No 10
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, structural genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=65.38 E-value=2.5 Score=22.51 Aligned_cols=41 Identities=29% Similarity=0.287 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH--HHHHHHH
Q ss_conf 9862055455433303888998861310002248--8889999
Q T0556 20 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVSA--AKCQEFG 60 (73)
Q Consensus 20 LkemnQStLakecpLsQSmiSsIVNstyyanvsa--~kCqEFG 60 (73)
.+.|+|..||+.|-++++.||.|-|+.....+.. .-|+.||
T Consensus 79 ~~glTq~elA~~~gvs~~~is~iE~G~~~ps~~~l~kia~~l~ 121 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALG 121 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 8299899999998979999999987998899999999999939
No 11
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=62.91 E-value=1.3 Score=24.05 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHC------CHHHHHHHHHHCCCH
Q ss_conf 899999999986----2055455433------303888998861310
Q T0556 11 TVRNALKDLLKD----MNQSSLAKEC------PLSQSMISSIVNSTY 47 (73)
Q Consensus 11 tVrnAlk~LLke----mnQStLakec------pLsQSmiSsIVNsty 47 (73)
.-|.||.+.+.+ +.|+.||+-- ++++|+||.|+.+.+
T Consensus 15 ~~k~~l~~~~~~~~~~~~Q~~la~wf~~~f~~~Is~STvs~Ilk~k~ 61 (144)
T 1iuf_A 15 HEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp HHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCHH
T ss_conf 99999999998659987799999999999889976989999996899
No 12
>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=62.16 E-value=7.3 Score=20.05 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHH
Q ss_conf 89999999998--6205545543330388899886131000224888899
Q T0556 11 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQE 58 (73)
Q Consensus 11 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa~kCqE 58 (73)
..-+.++++.+ .++|..||+.+-++|+.||.|-|+.+- +.|......
T Consensus 18 ~l~~~ir~~R~~~glTq~elA~~~Gis~~~is~iE~G~~~-~~sl~~l~~ 66 (83)
T 2a6c_A 18 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKID-LFSLESLID 66 (83)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGG-GCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCC-CCCHHHHHH
T ss_conf 9999999999996998899999985576355588624212-311589999
No 13
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=59.18 E-value=7.5 Score=19.99 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=34.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCC
Q ss_conf 89999999998--6205545543330388899886131000224
Q T0556 11 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS 52 (73)
Q Consensus 11 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvs 52 (73)
+|-..++++.+ .|+|.-||+.+-++++.||.+.|+.-..++.
T Consensus 13 ~iG~~Ir~~R~~~gltq~elA~~~gvs~~~is~~E~g~~~ps~~ 56 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQ 56 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 99999999999818869999998099999999997699889999
No 14
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=58.98 E-value=9.7 Score=19.40 Aligned_cols=46 Identities=30% Similarity=0.351 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCC
Q ss_conf 363789999999998--6205545543330388899886131000224
Q T0556 7 WSHTTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS 52 (73)
Q Consensus 7 W~h~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvs 52 (73)
.+...+-+.++++-+ .++|..||+.+-++++.||.|-|+.-..+++
T Consensus 8 ~~~~~lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~ 55 (88)
T 2wiu_B 8 YSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLT 55 (88)
T ss_dssp CSHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHH
T ss_conf 899999999999999859999999786399899999998799999999
No 15
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=58.34 E-value=12 Score=18.93 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=34.8
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHH----HHHHH
Q ss_conf 89999999998--6205545543330388899886131000224888----89999
Q T0556 11 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAK----CQEFG 60 (73)
Q Consensus 11 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa~k----CqEFG 60 (73)
.+-..|+++.+ .|+|..||..+-++++.||.|.|+.-. ++... |+.||
T Consensus 28 ~iG~~Lr~~R~~~glsq~~lA~~~gis~~~is~~E~G~~~--ps~~~l~~ia~~l~ 81 (117)
T 3f52_A 28 ALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKE--VSSELLASVCHALG 81 (117)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSC--CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHC
T ss_conf 9999999999995989999998860307789999753032--76999999999989
No 16
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=57.26 E-value=3.6 Score=21.70 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHH
Q ss_conf 9862055455433303888998861310002248888
Q T0556 20 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKC 56 (73)
Q Consensus 20 LkemnQStLakecpLsQSmiSsIVNstyyanvsa~kC 56 (73)
-+.++|..||+.+-++++.+|.+.|+... .+....
T Consensus 12 ~~~ltq~~la~~~gis~~~is~~E~g~~~--ps~~~l 46 (66)
T 1utx_A 12 KKKISQSELAALLEVSRQTINGIEKNKYN--PSLQLA 46 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTTSCC--CCHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHH
T ss_conf 85999999999759699999999879978--999999
No 17
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=57.09 E-value=11 Score=19.11 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 789999999998--62055455433303888998861310002248
Q T0556 10 TTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 10 ~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
..+...++++.+ .+.|..||+.+-++++.||.+.++.....+..
T Consensus 9 ~~~g~~ir~~R~~~gltq~~lA~~~gvs~~~i~~~E~g~~~p~~~~ 54 (77)
T 2b5a_A 9 RKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLIN 54 (77)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 9999999999998099999999896979999999985999999999
No 18
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=56.37 E-value=4.7 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCHH
Q ss_conf 620554554333038889988613100
Q T0556 22 DMNQSSLAKECPLSQSMISSIVNSTYY 48 (73)
Q Consensus 22 emnQStLakecpLsQSmiSsIVNstyy 48 (73)
.|+|..||+.+-++++.||.+.|+...
T Consensus 30 gltq~~LA~~lGis~~~is~~e~g~~~ 56 (236)
T 3bdn_A 30 GLSQESVADKMGMGQSGVGALFNGINA 56 (236)
T ss_dssp TCCSHHHHHHHTSCHHHHHHHTTTTSC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 999999999979799999999717650
No 19
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=55.66 E-value=3.6 Score=21.67 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCC-HHCC--CCHHHHHHHH
Q ss_conf 986205545543330388899886131-0002--2488889999
Q T0556 20 LKDMNQSSLAKECPLSQSMISSIVNST-YYAN--VSAAKCQEFG 60 (73)
Q Consensus 20 LkemnQStLakecpLsQSmiSsIVNst-yyan--vsa~kCqEFG 60 (73)
.+.|+|..||+.+-+++++||.|.|+. .... .-..=|+.||
T Consensus 12 ~~glsq~eLa~~~gis~~~is~~E~g~~~~ps~~~l~~ia~~l~ 55 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 55 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 84999999987869899999999879989999999999999989
No 20
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=55.48 E-value=13 Score=18.67 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHHH
Q ss_conf 78999999999--86205545543330388899886131000224888899999
Q T0556 10 TTVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGR 61 (73)
Q Consensus 10 ~tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEFGr 61 (73)
..+-..++++- +.|+|..||+.+-++++.|+.|-|+.. +++...-..+.+
T Consensus 10 ~~i~~~ik~~R~~~glsq~~la~~~gis~~~i~~~E~G~~--~~~~~~l~~ia~ 61 (82)
T 3clc_A 10 SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSR--NLTIKSLELIMK 61 (82)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCC--CCBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC--CCCHHHHHHHHH
T ss_conf 9999999999998299999998783998979999986998--999999999999
No 21
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=53.30 E-value=11 Score=19.18 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=33.5
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHH
Q ss_conf 8999999999--862055455433303888998861310002248888999
Q T0556 11 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 59 (73)
Q Consensus 11 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEF 59 (73)
.+...++++- +.+.|.-||+.+-++++.||.|-|+... ++......+
T Consensus 14 ~lg~~lk~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~--~~~~~l~~i 62 (86)
T 3eus_A 14 YLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERR--LDVIEFAKW 62 (86)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSC--CBHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHH
T ss_conf 9999999999984999999999979699999999889999--999999999
No 22
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=52.85 E-value=11 Score=19.13 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=34.0
Q ss_pred HHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHH
Q ss_conf 9999998--620554554333038889988613100022488889999999
Q T0556 15 ALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWY 63 (73)
Q Consensus 15 Alk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEFGrWy 63 (73)
-++++++ .++|..||+..-.+++.||.+.|+... .+......+-..|
T Consensus 14 rik~~r~~~glsq~~lA~~~gvs~~~is~~e~g~~~--p~~~~l~~la~~~ 62 (76)
T 3bs3_A 14 RIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQ--PSLDMLVKVAELL 62 (76)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHHHHHH
T ss_conf 999999993998999999989899999999869989--9999999999998
No 23
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=51.24 E-value=10 Score=19.34 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 37899999999986--2055455433303888998861310002248
Q T0556 9 HTTVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 9 h~tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
+..+-..++++.++ ++|..||..+-++++.|+.+.|+....++..
T Consensus 3 ~~~ig~~ik~lR~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~ 49 (76)
T 1adr_A 3 TQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGEN 49 (76)
T ss_dssp SCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 89999999999999199999999998949999999996998999999
No 24
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=50.81 E-value=16 Score=18.25 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=33.6
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHH
Q ss_conf 8999999999--862055455433303888998861310002248888999
Q T0556 11 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 59 (73)
Q Consensus 11 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEF 59 (73)
.+...++++- +.|+|..||..+-++++.|+.|.++... ++......+
T Consensus 14 ~l~~~lk~~R~~~gltq~~lA~~~gis~~~i~~iE~G~~~--~~~~~l~~i 62 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERR--LDVIEFMDF 62 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHH
T ss_conf 9999999999982999999998853899999999879989--999999999
No 25
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=50.13 E-value=15 Score=18.42 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCHHCCC
Q ss_conf 899999999986--20554554333038889988613100022
Q T0556 11 TVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANV 51 (73)
Q Consensus 11 tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyyanv 51 (73)
....-|++|.++ ++|..||+.+-.+++.|+.+-++.-..++
T Consensus 9 ~f~~~Lk~lr~~~g~tq~elA~~lgvs~~~i~~~E~G~~~ps~ 51 (94)
T 2kpj_A 9 IFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRM 51 (94)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHH
T ss_conf 9999999999990999999999885300567887601000478
No 26
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=50.08 E-value=11 Score=19.09 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHH
Q ss_conf 99999999986205545543330388899886131000224888
Q T0556 12 VRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAK 55 (73)
Q Consensus 12 VrnAlk~LLkemnQStLakecpLsQSmiSsIVNstyyanvsa~k 55 (73)
+-..++++-++++|+-||+.+-++++.||.|-|+.. .+.+...
T Consensus 17 lG~~ir~~R~~~s~~elA~~~Gvs~~~is~iE~G~~-~~Ps~~~ 59 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIETGRI-ATPAFFT 59 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTTCC-SSCBHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCC-CCCCHHH
T ss_conf 999999999859999999998959999999986997-8999999
No 27
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=49.27 E-value=11 Score=19.15 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCC
Q ss_conf 999999999--86205545543330388899886131000224
Q T0556 12 VRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVS 52 (73)
Q Consensus 12 VrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvs 52 (73)
+-..++++. +.++|..+|+.+-++++.||.+.++.-..++.
T Consensus 6 ig~~ik~~R~~~glsq~ela~~~gi~~~~i~~~E~g~~~p~~~ 48 (68)
T 2r1j_L 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGE 48 (68)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 9999999999929999999989796999999998799899999
No 28
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=46.61 E-value=19 Score=17.88 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHH
Q ss_conf 36378999999999--862055455433303888998861310002248888999
Q T0556 7 WSHTTVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 59 (73)
Q Consensus 7 W~h~tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEF 59 (73)
-+...+-..++++. +.|+|..||..|-+++++||.+-++.- +.+...-...
T Consensus 8 ~d~~~iG~rir~lR~~~gltq~elA~~~gvs~~~is~~E~G~~--~ps~~~l~~l 60 (126)
T 3ivp_A 8 YDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQ--HPSLQVLYDL 60 (126)
T ss_dssp CCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCC--CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCC--CCCHHHHHHH
T ss_conf 3799999999999998399999997742998858999974877--9999999999
No 29
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=45.26 E-value=17 Score=18.10 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH
Q ss_conf 36378999999999862055455433303888998861310
Q T0556 7 WSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTY 47 (73)
Q Consensus 7 W~h~tVrnAlk~LLkemnQStLakecpLsQSmiSsIVNsty 47 (73)
|+-..+-.-+++.+.--+|..||+.+-++++.||...+...
T Consensus 5 ~~~ee~l~Rl~e~~g~~sq~eLA~~lgvs~~tis~~~~~~~ 45 (189)
T 2fjr_A 5 WSNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGA 45 (189)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 67899999999984987799999997969999999995799
No 30
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=44.14 E-value=20 Score=17.66 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCHHCCC
Q ss_conf 9999999986--20554554333038889988613100022
Q T0556 13 RNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANV 51 (73)
Q Consensus 13 rnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyyanv 51 (73)
+..++.+.++ ++|..||+..-++++.||-+.|+....++
T Consensus 19 ~~~l~~~R~~~gltQ~elA~~lGis~~~is~~E~G~~~~s~ 59 (92)
T 1lmb_3 19 KAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNA 59 (92)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCH
T ss_conf 99999999992999999998888788579999759999999
No 31
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=43.92 E-value=6.9 Score=20.18 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=31.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCC
Q ss_conf 8999999999--86205545543330388899886131000224
Q T0556 11 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVS 52 (73)
Q Consensus 11 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvs 52 (73)
.+-.-++++- +.|+|..||+.+-++.++||.|-|+.-...++
T Consensus 11 ~ig~rir~~R~~~glt~~elA~~~g~s~~~ls~iE~g~~~ps~~ 54 (192)
T 1y9q_A 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIA 54 (192)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 99999999999829999999999894999999997699755536
No 32
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=42.71 E-value=22 Score=17.54 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHHH
Q ss_conf 6205545543330388899886131000224888899999
Q T0556 22 DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGR 61 (73)
Q Consensus 22 emnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEFGr 61 (73)
.++|..||+.+-++|+.||.+.|+.-- ++......|-+
T Consensus 25 gltq~elA~~lg~s~~~is~~E~G~~~--~s~~~l~~ia~ 62 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFNGINA--LNAYNAALLAK 62 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTTSSC--CCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHHHH
T ss_conf 998999998788049799998889999--99999999999
No 33
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=39.71 E-value=10 Score=19.33 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=21.3
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHC
Q ss_conf 205545543330388899886131000
Q T0556 23 MNQSSLAKECPLSQSMISSIVNSTYYA 49 (73)
Q Consensus 23 mnQStLakecpLsQSmiSsIVNstyya 49 (73)
++.+-||+..-||++.+|.||+.---.
T Consensus 54 iSR~eLa~~tgLS~~TVs~iv~~L~~~ 80 (429)
T 1z05_A 54 ISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 189999988796999999999999988
No 34
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=35.21 E-value=24 Score=17.31 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHH
Q ss_conf 999999998--620554554333038889988613100
Q T0556 13 RNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYY 48 (73)
Q Consensus 13 rnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyy 48 (73)
-.++.++++ ...|...|+.+-.+|+-+|-|.|+.+.
T Consensus 42 ~~~I~~~I~~~~ltQ~eAA~~lGi~QprvS~L~~Gk~~ 79 (120)
T 2o38_A 42 AYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLE 79 (120)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 99999999986985766766628887887699808822
No 35
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=34.67 E-value=13 Score=18.74 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=29.0
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCC-CHHCCCC
Q ss_conf 999999999--8620554554333038889988613-1000224
Q T0556 12 VRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNS-TYYANVS 52 (73)
Q Consensus 12 VrnAlk~LL--kemnQStLakecpLsQSmiSsIVNs-tyyanvs 52 (73)
+-.-++++- +.|.|..||.-+-+|.||||-|-|+ .-...++
T Consensus 11 lg~rir~~R~~~~ltl~~LA~~~GvS~~~lS~iE~G~~~~psl~ 54 (198)
T 2bnm_A 11 FAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLT 54 (198)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 99999999998599999999997989999999984986674377
No 36
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=34.17 E-value=30 Score=16.78 Aligned_cols=47 Identities=6% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCC--HHHHHHHHHHCCCHHCCCCHHHHHHHH
Q ss_conf 999999999--8620554554333--038889988613100022488889999
Q T0556 12 VRNALKDLL--KDMNQSSLAKECP--LSQSMISSIVNSTYYANVSAAKCQEFG 60 (73)
Q Consensus 12 VrnAlk~LL--kemnQStLakecp--LsQSmiSsIVNstyyanvsa~kCqEFG 60 (73)
+-+-++++= +.++|..||+..- ++++.||.|-|+.-.. +........
T Consensus 9 ig~rlr~~R~~~gltq~~lA~~~g~~is~~~is~~E~G~~~p--s~~~l~~la 59 (71)
T 2ewt_A 9 LGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAV--TVQRLAELA 59 (71)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCC--CHHHHHHHH
T ss_conf 999999999984996999999988972899999998699899--999999999
No 37
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=32.11 E-value=7.4 Score=20.03 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCHHCC
Q ss_conf 862055455433303888998861310002
Q T0556 21 KDMNQSSLAKECPLSQSMISSIVNSTYYAN 50 (73)
Q Consensus 21 kemnQStLakecpLsQSmiSsIVNstyyan 50 (73)
+.|+|..||+..-+|+|.||-+-|+.-..+
T Consensus 13 ~glsq~elA~~~gis~~tis~~E~G~~~ps 42 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENGTSSVS 42 (158)
T ss_dssp ------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 399999999997979999999987987899
No 38
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=31.39 E-value=17 Score=18.14 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCC
Q ss_conf 986205545543330388899886131000224
Q T0556 20 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVS 52 (73)
Q Consensus 20 LkemnQStLakecpLsQSmiSsIVNstyyanvs 52 (73)
-+.++|..||+.+-++++.||.+-++.-..+++
T Consensus 34 ~~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~ 66 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDS 66 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 829999999999798898999998799999999
No 39
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.89 E-value=17 Score=18.05 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=32.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHH
Q ss_conf 9999999998--620554554333038889988613100022488889
Q T0556 12 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQ 57 (73)
Q Consensus 12 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa~kCq 57 (73)
.-..++++.+ .|+|.-||+.+-++++.|+.|.|+.. +.+.....
T Consensus 14 ig~~lk~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~--~ps~~~l~ 59 (74)
T 1y7y_A 14 FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQR--NVSLVNIL 59 (74)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS--CCBHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC--CCCHHHHH
T ss_conf 99999999998099999999898969999999987998--99999999
No 40
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=30.42 E-value=25 Score=17.24 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 999999862055455433303888998861
Q T0556 15 ALKDLLKDMNQSSLAKECPLSQSMISSIVN 44 (73)
Q Consensus 15 Alk~LLkemnQStLakecpLsQSmiSsIVN 44 (73)
.|.|..++..|.+.|+..-+.|+-||--+-
T Consensus 6 ~L~~yv~~~GQ~kaA~~lGv~Q~aISKAir 35 (66)
T 2ovg_A 6 TLKDYAMRFGQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp EHHHHHHHHCHHHHHHHHTSCHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 099999996548899982965899999997
No 41
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=30.11 E-value=26 Score=17.14 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 00363789999999998620554554333038
Q T0556 5 EQWSHTTVRNALKDLLKDMNQSSLAKECPLSQ 36 (73)
Q Consensus 5 eqW~h~tVrnAlk~LLkemnQStLakecpLsQ 36 (73)
.|-.|+..+|-+-+|+-.||.+.|...|.|-.
T Consensus 19 n~Lp~~~fkNl~Fql~skm~R~eLsDl~TliK 50 (56)
T 2p63_A 19 NNLPHAYFKNLLFRLVANMDRSELSDLGTLIK 50 (56)
T ss_dssp GGSCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02988999999999999844988888999998
No 42
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=29.66 E-value=36 Score=16.36 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 637899999999986--2055455433303888998861310002248888999999999875
Q T0556 8 SHTTVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKK 68 (73)
Q Consensus 8 ~h~tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEFGrWyk~ykk 68 (73)
+...|-..+++.|.+ ..|...+..+.+|||.||.+.++-+- .+..+-..|.+||..-+.
T Consensus 28 d~~~~a~eIk~~L~~~~i~Q~~~~~~tg~SqssiS~~L~~~~~--~~~~~~~~~~~~~~~~~~ 88 (221)
T 2h8r_A 28 DPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTP--MKTQKRAALYTWYVRKQR 88 (221)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCC--CCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHCCCCC--CCCCCHHHCCCHHHCCCC
T ss_conf 8999999999999987995133123346772449899659997--432530110230111244
No 43
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5}
Probab=28.46 E-value=28 Score=16.96 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=25.4
Q ss_pred HHHHHHHHHH-HHHHHHHCCHHHHHHHHHH
Q ss_conf 9999998620-5545543330388899886
Q T0556 15 ALKDLLKDMN-QSSLAKECPLSQSMISSIV 43 (73)
Q Consensus 15 Alk~LLkemn-QStLakecpLsQSmiSsIV 43 (73)
.|.|.+++-. |.+.|+..-..|+-||--+
T Consensus 5 ~L~dyv~~~G~QakaA~~lGV~Q~AISKAi 34 (67)
T 2pij_A 5 PLSKYLEEHGTQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp EHHHHHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCCHHHHHHHCCCCHHHHHHHH
T ss_conf 199999994728889998297489999999
No 44
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=27.62 E-value=39 Score=16.16 Aligned_cols=51 Identities=27% Similarity=0.143 Sum_probs=34.9
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH--HHHHHHHH
Q ss_conf 89999999998--62055455433303888998861310002248--88899999
Q T0556 11 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSA--AKCQEFGR 61 (73)
Q Consensus 11 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa--~kCqEFGr 61 (73)
.+...++++-+ .|.|..||+..-++++.||.|-|+.-..++.. .-|+-||-
T Consensus 10 ~l~~~ir~~R~~~gltq~~lA~~lgvs~~~is~~E~G~~~p~~~~l~~ia~~lg~ 64 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVAS 64 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 9999999999995999999999872699999999879999999999999999689
No 45
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=27.46 E-value=31 Score=16.73 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHCCHHHHHHHHHHCC-----------------CHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 789999999998---620554554333038889988613-----------------10002248888999999999875
Q T0556 10 TTVRNALKDLLK---DMNQSSLAKECPLSQSMISSIVNS-----------------TYYANVSAAKCQEFGRWYKHFKK 68 (73)
Q Consensus 10 ~tVrnAlk~LLk---emnQStLakecpLsQSmiSsIVNs-----------------tyyanvsa~kCqEFGrWyk~ykk 68 (73)
+.+|-++...|. +++++.||+.+-++++.+|.+++. ..+..++..--++|.++....++
T Consensus 15 ~p~r~~Il~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~GlV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~~l~~ 93 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKA 93 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999726789619999998852687441999986421248888767667542022689999999999999999
No 46
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=25.93 E-value=23 Score=17.37 Aligned_cols=39 Identities=8% Similarity=0.124 Sum_probs=30.3
Q ss_pred HHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 9999998--62055455433303888998861310002248
Q T0556 15 ALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 15 Alk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
.++.+=+ .|+|..||+.+-.++++|+.+-++...-..++
T Consensus 34 ~ir~lR~~~gltQ~~lA~~lgvs~~ti~~~E~G~~~P~~~~ 74 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPA 74 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 99999999599999999893998999999988998799999
No 47
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=25.92 E-value=28 Score=16.98 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=28.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 87000363789999999998620554554333038889988613
Q T0556 2 LPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNS 45 (73)
Q Consensus 2 lp~eqW~h~tVrnAlk~LLkemnQStLakecpLsQSmiSsIVNs 45 (73)
|+..||. |-..+. --.+|+++.||+..-++.+.+|.+|+.
T Consensus 38 lt~~q~~---iL~~l~-~~~~~t~~eLa~~~~i~~~tisr~i~~ 77 (147)
T 1z91_A 38 ITYPQYL---ALLLLW-EHETLTVKKMGEQLYLDSGTLTPMLKR 77 (147)
T ss_dssp CCHHHHH---HHHHHH-HHSEEEHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8999999---999988-589999999999979687668899999
No 48
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=25.22 E-value=44 Score=15.91 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=26.9
Q ss_pred HHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHH
Q ss_conf 55455433303888998861310002248888999
Q T0556 25 QSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 59 (73)
Q Consensus 25 QStLakecpLsQSmiSsIVNstyyanvsa~kCqEF 59 (73)
-..+|+.|-+|.++.|-+.|++ ..||.+..+.-
T Consensus 5 ikdIA~~aGVS~~TVSr~Ln~~--~~Vs~~tr~rV 37 (332)
T 2hsg_A 5 IYDVAREASVSMATVSRVVNGN--PNVKPSTRKKV 37 (332)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTC--TTSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCC--CCCCHHHHHHH
T ss_conf 9999999896999999997795--99999999999
No 49
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=25.00 E-value=44 Score=15.89 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHH-CCCH
Q ss_conf 899999999986--205545543330388899886-1310
Q T0556 11 TVRNALKDLLKD--MNQSSLAKECPLSQSMISSIV-NSTY 47 (73)
Q Consensus 11 tVrnAlk~LLke--mnQStLakecpLsQSmiSsIV-Nsty 47 (73)
.-+..|++++++ ++...||+.+-++.||||-|- |+.-
T Consensus 230 ~~~slLk~~rk~RGLTL~eLAkrTGIS~S~LSqIERngks 269 (443)
T 3g7d_A 230 SAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPAS 269 (443)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 0689999999971888999998869899999999856888
No 50
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=21.91 E-value=35 Score=16.39 Aligned_cols=42 Identities=26% Similarity=0.550 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999862055455433303888998861310002248888999999999875
Q T0556 16 LKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKK 68 (73)
Q Consensus 16 lk~LLkemnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEFGrWyk~ykk 68 (73)
+|-|-.-++.-.+.|..| |..+|.+.|-+|+ ||-+|+++|-.
T Consensus 65 ~klLq~af~kl~I~k~i~-----v~kLikgk~qdNl------eflqWfk~f~d 106 (123)
T 2qjz_A 65 FKILQAGFKRMGVDKIIP-----VDKLVKGKFQDNF------EFVQWFKKFFD 106 (123)
T ss_dssp HHHHHHHHHHHTCCCCCC-----HHHHTTCCHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCC-----HHHHHCCCHHHHH------HHHHHHHHHHH
T ss_conf 999999999839998777-----9998726607699------99999999998
No 51
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=21.62 E-value=41 Score=16.06 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q ss_conf 0036378999999999862
Q T0556 5 EQWSHTTVRNALKDLLKDM 23 (73)
Q Consensus 5 eqW~h~tVrnAlk~LLkem 23 (73)
-+|+-+..||||.+|+.+-
T Consensus 28 f~w~L~~ar~aLEqLfs~G 46 (68)
T 3i71_A 28 FGWPLEKARNALEQLFSAG 46 (68)
T ss_dssp HTCCHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHCC
T ss_conf 7786899999999998654
No 52
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=21.00 E-value=25 Score=17.18 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 9862055455433303888998861310002248
Q T0556 20 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 20 LkemnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
.+.|+|..||..+-.+++.||.+-++...-+.+.
T Consensus 22 ~~gltQ~elA~~lgvs~~tv~~wE~G~~~P~~~~ 55 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPST 55 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 8699999999997989999999994998999999
No 53
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3gjo_A 1yib_A 1yig_A
Probab=20.02 E-value=41 Score=16.06 Aligned_cols=24 Identities=29% Similarity=0.717 Sum_probs=15.1
Q ss_pred HHHHHCCCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 998861310002248888999999999875
Q T0556 39 ISSIVNSTYYANVSAAKCQEFGRWYKHFKK 68 (73)
Q Consensus 39 iSsIVNstyyanvsa~kCqEFGrWyk~ykk 68 (73)
|..+|.+.|-.| -||-+|+|+|-.
T Consensus 93 v~kLikgk~qdn------leflqWfk~~~d 116 (268)
T 2r8u_A 93 VDKLVKGKFQDN------FEFVQWFKKFFD 116 (268)
T ss_dssp HHHHTTTCHHHH------HHHHHHHHHHHH
T ss_pred HHHHHCCCCHHH------HHHHHHHHHHHH
T ss_conf 999863770559------999999999998
Done!