Query T0556 HR4435B, , 73 residues
Match_columns 73
No_of_seqs 8 out of 10
Neff 1.6
Searched_HMMs 15564
Date Tue May 25 15:42:59 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0556.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0556.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2icta1 a.35.1.3 (A:8-94) Anti 87.5 0.42 2.7E-05 25.8 4.4 39 15-53 5-45 (87)
2 d2o38a1 a.35.1.13 (A:28-116) H 79.8 2.3 0.00015 21.9 5.5 49 10-59 10-60 (89)
3 d2croa_ a.35.1.2 (A:) cro 434 79.7 0.72 4.6E-05 24.6 2.9 39 9-47 1-41 (65)
4 d2ofya1 a.35.1.3 (A:3-84) Puta 71.3 1.3 8.3E-05 23.2 2.4 41 12-52 15-56 (82)
5 d2a6ca1 a.35.1.13 (A:1-69) HTH 68.1 3.2 0.0002 21.1 3.8 37 11-47 6-44 (69)
6 d1ic8a2 a.35.1.1 (A:87-180) He 66.5 4.1 0.00026 20.6 4.1 46 22-69 41-86 (94)
7 d1b0na2 a.35.1.3 (A:1-68) SinR 64.9 1.5 9.9E-05 22.8 1.7 47 14-60 4-55 (68)
8 d2r1jl1 a.35.1.2 (L:3-68) P22 64.8 3.9 0.00025 20.6 3.8 42 12-53 4-47 (66)
9 d1utxa_ a.35.1.3 (A:) Putative 60.3 2.1 0.00013 22.1 1.7 36 20-57 12-47 (66)
10 d2b5aa1 a.35.1.3 (A:1-77) Regu 60.3 6 0.00039 19.7 4.0 41 12-52 11-53 (77)
11 d1y9qa1 a.35.1.8 (A:4-82) Prob 57.4 7.2 0.00046 19.2 4.0 43 11-53 8-52 (79)
12 d1y7ya1 a.35.1.3 (A:5-73) Rest 53.7 3.2 0.0002 21.1 1.7 46 12-59 10-57 (69)
13 d1x57a1 a.35.1.12 (A:8-85) End 52.1 3.2 0.00021 21.1 1.5 43 11-53 6-50 (78)
14 d1r69a_ a.35.1.2 (A:) 434 C1 r 47.7 8.7 0.00056 18.8 3.2 36 12-47 2-39 (63)
15 d1d1la_ a.35.1.2 (A:) cro lamb 38.9 8.8 0.00057 18.8 2.1 29 15-43 6-34 (61)
16 d1hlva1 a.4.1.7 (A:1-66) DNA-b 38.0 17 0.0011 17.3 3.4 34 13-46 14-49 (66)
17 d2ppxa1 a.35.1.3 (A:30-91) Unc 34.2 10 0.00067 18.4 1.9 31 21-51 11-41 (62)
18 d2qjza1 a.40.1.1 (A:13-132) Mi 24.3 21 0.0013 16.8 2.0 41 17-68 64-104 (120)
19 d2fbha1 a.4.5.28 (A:8-144) Tra 22.5 19 0.0012 17.0 1.4 24 22-45 43-66 (137)
20 d1lmb3_ a.35.1.2 (3:) lambda C 22.1 35 0.0022 15.6 3.9 37 21-59 24-60 (87)
21 d1ub9a_ a.4.5.28 (A:) Hypothet 20.1 39 0.0025 15.3 3.0 60 10-69 15-94 (100)
No 1
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=87.49 E-value=0.42 Score=25.80 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 99999986--2055455433303888998861310002248
Q T0556 15 ALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 15 Alk~LLke--mnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
-|++++++ ++|..||+.+-++++.||.|.|+....+...
T Consensus 5 ~lke~r~~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~ 45 (87)
T d2icta1 5 IIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEM 45 (87)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHH
T ss_conf 99999998699999999997246999999998501798999
No 2
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=79.85 E-value=2.3 Score=21.90 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHH
Q ss_conf 789999999998--62055455433303888998861310002248888999
Q T0556 10 TTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 59 (73)
Q Consensus 10 ~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEF 59 (73)
..+-..++++.+ .|+|..||+.|-++|+.||.|.|+.+ .+++..+...+
T Consensus 10 ~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~~-~~~~~~~L~~i 60 (89)
T d2o38a1 10 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKL-EGFSVERLMTL 60 (89)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHH
T ss_conf 9999999999999599999999999733708999984997-89868999999
No 3
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=79.66 E-value=0.72 Score=24.57 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCH
Q ss_conf 3789999999998--62055455433303888998861310
Q T0556 9 HTTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTY 47 (73)
Q Consensus 9 h~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNsty 47 (73)
|.++...++++.+ .|+|..||+.+-++++.||.+.|+..
T Consensus 1 M~~i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~ 41 (65)
T d2croa_ 1 MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT 41 (65)
T ss_dssp CCSHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 94899999999998499999999997867949998787799
No 4
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=71.30 E-value=1.3 Score=23.23 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHH-CCCC
Q ss_conf 9999999998620554554333038889988613100-0224
Q T0556 12 VRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYY-ANVS 52 (73)
Q Consensus 12 VrnAlk~LLkemnQStLakecpLsQSmiSsIVNstyy-anvs 52 (73)
+-..++++=++++|+-||+.+-++++.||.|-|+... -++.
T Consensus 15 lG~~ir~~R~~~t~~eLA~~~Gvs~~~ls~iE~G~~~~ps~~ 56 (82)
T d2ofya1 15 LGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFF 56 (82)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHH
T ss_conf 999999999807999999897179999999982986788899
No 5
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=68.07 E-value=3.2 Score=21.14 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCH
Q ss_conf 89999999998--62055455433303888998861310
Q T0556 11 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTY 47 (73)
Q Consensus 11 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNsty 47 (73)
.....++++.+ .|+|..||+-+-++|+.||.|-|+..
T Consensus 6 ~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~g~~ 44 (69)
T d2a6ca1 6 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKI 44 (69)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 999999999999699999999998747847999976652
No 6
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.55 E-value=4.1 Score=20.55 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 620554554333038889988613100022488889999999998753
Q T0556 22 DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKKT 69 (73)
Q Consensus 22 emnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEFGrWyk~ykk~ 69 (73)
...|.+.|...-|+||-||--.|... .++..|-.-|=+||-.-|+.
T Consensus 41 ~I~Q~~Va~~TGlsQS~iSq~L~~g~--~M~~~KR~alYtWylr~kR~ 86 (94)
T d1ic8a2 41 NIPQREVVDTTGLNQSHLSQHLNKGT--PMKTQKRAALYTWYVRKQRE 86 (94)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHSBC--CCCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHH
T ss_conf 88599999998015999999982799--85179999999999999999
No 7
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=64.91 E-value=1.5 Score=22.81 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=33.2
Q ss_pred HHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCC-HHCCCC--HHHHHHHH
Q ss_conf 9999999--86205545543330388899886131-000224--88889999
Q T0556 14 NALKDLL--KDMNQSSLAKECPLSQSMISSIVNST-YYANVS--AAKCQEFG 60 (73)
Q Consensus 14 nAlk~LL--kemnQStLakecpLsQSmiSsIVNst-yyanvs--a~kCqEFG 60 (73)
+.++++. +.|+|..||+.+-++++.||.|.|+. +..++. ..=|+.||
T Consensus 4 ~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~ 55 (68)
T d1b0na2 4 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 55 (68)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 9999999982999999998979799999999859989999999999999989
No 8
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=64.83 E-value=3.9 Score=20.64 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=32.4
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 999999999--862055455433303888998861310002248
Q T0556 12 VRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 12 VrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
+.+.++++. +.++|..||+.+-++++.+|.+.|+....++..
T Consensus 4 ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~ 47 (66)
T d2r1jl1 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGEN 47 (66)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 99999999998599999999997989999999986998999999
No 9
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=60.29 E-value=2.1 Score=22.14 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHH
Q ss_conf 98620554554333038889988613100022488889
Q T0556 20 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQ 57 (73)
Q Consensus 20 LkemnQStLakecpLsQSmiSsIVNstyyanvsa~kCq 57 (73)
-+.|+|..||+.+-++++.+|.|.|+... .+.....
T Consensus 12 ~~g~tq~elA~~~gis~~~is~~e~g~~~--p~~~~l~ 47 (66)
T d1utxa_ 12 KKKISQSELAALLEVSRQTINGIEKNKYN--PSLQLAL 47 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTTSCC--CCHHHHH
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHCCCCC--CCHHHHH
T ss_conf 85999999988635579899999869989--9999999
No 10
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=60.27 E-value=6 Score=19.66 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=31.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCC
Q ss_conf 9999999998--6205545543330388899886131000224
Q T0556 12 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS 52 (73)
Q Consensus 12 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvs 52 (73)
+...++++.+ .++|..||+.+-++++.|+.|.|+.....+.
T Consensus 11 ~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~ 53 (77)
T d2b5aa1 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLI 53 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 9999999999809999999989797999999998699899999
No 11
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=57.37 E-value=7.2 Score=19.25 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 8999999999--862055455433303888998861310002248
Q T0556 11 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 11 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
.+-+.|+++. +.|+|..||+.+-++.+.|+.|.|+....++..
T Consensus 8 ~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~ 52 (79)
T d1y9qa1 8 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIAT 52 (79)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999999999998299999999987711648999986998999999
No 12
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=53.69 E-value=3.2 Score=21.13 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHH
Q ss_conf 9999999998--62055455433303888998861310002248888999
Q T0556 12 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 59 (73)
Q Consensus 12 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEF 59 (73)
..+.++++-+ .|+|..||+.|-.+++.||.+-++... .+......+
T Consensus 10 ~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~--p~~~~l~~i 57 (69)
T d1y7ya1 10 FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRN--VSLVNILKL 57 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSC--CBHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHH
T ss_conf 999999999983999999986829989899999879999--999999999
No 13
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.12 E-value=3.2 Score=21.11 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=32.7
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCH
Q ss_conf 8999999999--862055455433303888998861310002248
Q T0556 11 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSA 53 (73)
Q Consensus 11 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa 53 (73)
++-..++++- +.|+|..||+.+-++++.||.+-|+....++..
T Consensus 6 ~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~ 50 (78)
T d1x57a1 6 EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 50 (78)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999999999998599726788718878999999980677999999
No 14
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=47.65 E-value=8.7 Score=18.79 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCH
Q ss_conf 999999999--862055455433303888998861310
Q T0556 12 VRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTY 47 (73)
Q Consensus 12 VrnAlk~LL--kemnQStLakecpLsQSmiSsIVNsty 47 (73)
+-..++++. +.|+|..||+.+-.+++.||.+-|+..
T Consensus 2 ig~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~g~~ 39 (63)
T d1r69a_ 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT 39 (63)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 89999999998499699999983739999999878989
No 15
>d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]}
Probab=38.85 E-value=8.8 Score=18.77 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999986205545543330388899886
Q T0556 15 ALKDLLKDMNQSSLAKECPLSQSMISSIV 43 (73)
Q Consensus 15 Alk~LLkemnQStLakecpLsQSmiSsIV 43 (73)
.|.|.+.+..|.+.|+..-+.|+-||--+
T Consensus 6 tL~dyv~~~GQaKaA~~LGv~Q~AIsKAi 34 (61)
T d1d1la_ 6 TLKDYAMRFGQTKTAKDLGVYQSAINKAI 34 (61)
T ss_dssp EHHHHHHHHCHHHHHHHHTCCTHHHHHHH
T ss_pred EHHHHHHHHCHHHHHHHCCCCHHHHHHHH
T ss_conf 19999999775989998296488999999
No 16
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.05 E-value=17 Score=17.30 Aligned_cols=34 Identities=12% Similarity=0.386 Sum_probs=25.7
Q ss_pred HHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 9999999986--205545543330388899886131
Q T0556 13 RNALKDLLKD--MNQSSLAKECPLSQSMISSIVNST 46 (73)
Q Consensus 13 rnAlk~LLke--mnQStLakecpLsQSmiSsIVNst 46 (73)
...+..+-.. |.|+.+|++--+..|.+|+|+.+.
T Consensus 14 ~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK 49 (66)
T d1hlva1 14 SRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNK 49 (66)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999980872109999999599764799999879
No 17
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=34.20 E-value=10 Score=18.38 Aligned_cols=31 Identities=3% Similarity=0.050 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCC
Q ss_conf 8620554554333038889988613100022
Q T0556 21 KDMNQSSLAKECPLSQSMISSIVNSTYYANV 51 (73)
Q Consensus 21 kemnQStLakecpLsQSmiSsIVNstyyanv 51 (73)
..|+|..||+.+-.++++||.+-|+....+.
T Consensus 11 ~gltQ~elA~~lGvs~~tvs~~E~G~~~P~~ 41 (62)
T d2ppxa1 11 LKLTQEEFSARYHIPLGTLRDWEQGRSEPDQ 41 (62)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTSSCCCH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCH
T ss_conf 6999999999969899999988779889999
No 18
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.32 E-value=21 Score=16.80 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999862055455433303888998861310002248888999999999875
Q T0556 17 KDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKK 68 (73)
Q Consensus 17 k~LLkemnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEFGrWyk~ykk 68 (73)
|-|-.-++.-.+.|..| |..+|.+.|-.|+ ||-+|+++|-.
T Consensus 64 klLq~af~kl~I~k~i~-----v~kLikgk~qdnl------eflqWfk~f~d 104 (120)
T d2qjza1 64 KILQAGFKRMGVDKIIP-----VDKLVKGKFQDNF------EFVQWFKKFFD 104 (120)
T ss_dssp HHHHHHHHHHTCCCCCC-----HHHHTTCCHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCC-----HHHHHCCCCHHHH------HHHHHHHHHHH
T ss_conf 99999999839998888-----9998625606699------99999999998
No 19
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.46 E-value=19 Score=17.05 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 620554554333038889988613
Q T0556 22 DMNQSSLAKECPLSQSMISSIVNS 45 (73)
Q Consensus 22 emnQStLakecpLsQSmiSsIVNs 45 (73)
.++++.||+...++++.+|.+|+.
T Consensus 43 ~~t~~~la~~~~~~~~~vs~~v~~ 66 (137)
T d2fbha1 43 SPTQRELAQSVGVEGPTLARLLDG 66 (137)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 976999999989789899999999
No 20
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=22.11 E-value=35 Score=15.57 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHH
Q ss_conf 862055455433303888998861310002248888999
Q T0556 21 KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 59 (73)
Q Consensus 21 kemnQStLakecpLsQSmiSsIVNstyyanvsa~kCqEF 59 (73)
+.++|..||+..-.+++.||.|-|+.-. ++...-+.+
T Consensus 24 ~gltq~~lA~~lgis~~~is~~E~g~~~--~s~~~l~~i 60 (87)
T d1lmb3_ 24 LGLSQESVADKMGMGQSGVGALFNGINA--LNAYNAALL 60 (87)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSC--CCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCC--CCHHHHHHH
T ss_conf 3999999998867228889999811478--759999999
No 21
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.08 E-value=39 Score=15.33 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=42.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHCCHHHHHHHHHHCC-----------------CHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999---8620554554333038889988613-----------------100022488889999999998753
Q T0556 10 TTVRNALKDLL---KDMNQSSLAKECPLSQSMISSIVNS-----------------TYYANVSAAKCQEFGRWYKHFKKT 69 (73)
Q Consensus 10 ~tVrnAlk~LL---kemnQStLakecpLsQSmiSsIVNs-----------------tyyanvsa~kCqEFGrWyk~ykk~ 69 (73)
+..|-++...| .+++.+.||+...++++.+|.+++. ..+-.++..--++|.+|+...++.
T Consensus 15 ~p~r~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~~~~~~ 94 (100)
T d1ub9a_ 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAV 94 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999876047990199999998625432309999882310368887576776534557899999999999999999
Done!