Query T0557 NeR70A, , 145 residues
Match_columns 145
No_of_seqs 116 out of 927
Neff 8.2
Searched_HMMs 22458
Date Tue May 25 15:40:25 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0557.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0557.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lmm_A Uncharacterized protein 99.9 7.5E-23 3.3E-27 136.6 9.4 108 15-144 35-159 (583)
2 2q22_A Uncharacterized protein 66.5 3.7 0.00016 19.3 3.1 78 29-144 36-113 (139)
3 1gh9_A 8.3 kDa protein (gene M 19.4 36 0.0016 14.2 1.5 14 132-145 12-25 (71)
4 1q02_A Sequestosome 1; helical 8.4 92 0.0041 12.1 1.0 21 30-50 8-29 (52)
5 1af7_A Chemotaxis receptor met 7.6 1E+02 0.0046 11.8 1.1 13 47-59 136-148 (274)
6 3daw_B Twinfilin-1, protein A6 6.1 1.2E+02 0.0055 11.4 6.5 33 28-63 24-56 (164)
7 1wcu_A CBM29_1, non-catalytic 5.8 1.3E+02 0.0058 11.3 1.3 73 45-125 59-132 (153)
8 2apo_A Probable tRNA pseudouri 4.7 1.5E+02 0.0069 10.9 1.7 13 48-60 107-119 (357)
9 1yud_A Hypothetical protein SO 3.6 1.9E+02 0.0084 10.5 1.4 25 1-27 11-37 (170)
10 1pav_A Hypothetical protein TA 3.0 2.2E+02 0.0099 10.1 2.9 43 9-58 25-67 (78)
No 1
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=99.88 E-value=7.5e-23 Score=136.58 Aligned_cols=108 Identities=25% Similarity=0.370 Sum_probs=77.8
Q ss_pred CCCCEEEEEECCC-------------C---HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEECC-CHHHH
Q ss_conf 8996577741578-------------8---47999999997088778970799986327763366532202202-03578
Q T0557 15 DESARIEAKRASD-------------M---GKSVMETVIAFANEPGLDGGYLLLGVDWAINDKGDTVYRPVGLP-DPDKV 77 (145)
Q Consensus 15 ~E~~~lEfK~~~~-------------~---~~~l~k~i~AFAN~~~~~GG~liiGV~d~~~~~~~~~~~~~~~~-~~~~~ 77 (145)
.|++++|||+.+. . .++|+++||||||+ .+||+|+|||+|++..+. |++ +.+
T Consensus 35 ~E~~~~efK~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~afAN~--~~GG~Ii~GV~D~~g~iv-------Gv~~d~~-- 103 (583)
T 3lmm_A 35 KETQSVDFKEEAGRRNGPQIEPGKPENPEAADKLADEVACMANT--PGGGALIVGIEDKTGRII-------GTELDID-- 103 (583)
T ss_dssp GGGTTCEEECCSSCBCSSSBCCCCSCCHHHHHHHHHHHHHHHHS--TTCEEEEETBCTTTCBBC-------CCCCCHH--
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCEEEEEEECCCCCEE-------CCCCCHH--
T ss_conf 66650686552455665444666656871298999999884379--999889999988998371-------6368999--
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCEE
Q ss_conf 9999998760388530245889984697899998335999888588758799861689826875211
Q T0557 78 QRDLASQCASMLNVALRPEMQLEQVGGKTLLVVYVPEADVTHKPIYKKATGLPGGAYRRIGSSDQRC 144 (145)
Q Consensus 78 ~~~l~~~~~~~~~p~~~~~i~~~~~~g~~i~vi~Ip~s~~~~~P~~~~~~~~~~~~Y~R~g~~~~~~ 144 (145)
.+.+.+.+.+.|. ++++.+.++|+.|++|+||+++ . |+|. ..+++|+|+|+++++|
T Consensus 104 --~l~~~i~~~~~~~--p~i~~~~i~gk~vlvi~Vp~~~--~-~py~----~~g~~yiRvG~~~~~~ 159 (583)
T 3lmm_A 104 --WLRQGIFTRIDVA--PDVVAKRVLGQRVLAIYVAAAA--E-PIED----TSDRLRWRVGDSCRPV 159 (583)
T ss_dssp --HHHHHHHHHHSCC--CEEEEEESSSCEEEEEEECCCS--S-CCCC----TTSCCEEECSSSEEEC
T ss_pred --HHHHHHHHCCCCC--CCEEEEEECCCEEEEEEECCCC--C-CCEE----CCCEEEEECCCCCCCC
T ss_conf --9999876247998--7439999899789999986898--7-8877----6886799848877579
No 2
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1
Probab=66.51 E-value=3.7 Score=19.33 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEE
Q ss_conf 47999999997088778970799986327763366532202202035789999998760388530245889984697899
Q T0557 29 GKSVMETVIAFANEPGLDGGYLLLGVDWAINDKGDTVYRPVGLPDPDKVQRDLASQCASMLNVALRPEMQLEQVGGKTLL 108 (145)
Q Consensus 29 ~~~l~k~i~AFAN~~~~~GG~liiGV~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~i~~~~~~g~~i~ 108 (145)
.+.|.+.+.+.+.. --|+-|||=-. ..+.....|++.....-.+..
T Consensus 36 ~~~Lr~eL~~~~~~----sdw~tiGImA~---------------s~~~Ai~ALrs~~~~~~~~~~--------------- 81 (139)
T 2q22_A 36 KESVRRALILITKL----SDYQILGICAD---------------TADEGLLAMKTYSHALGYEVP--------------- 81 (139)
T ss_dssp HHHHHHHHHHHHHT----SSEEEEEEEES---------------SHHHHHHHHHHHHHHTTCCCC---------------
T ss_pred HHHHHHHHHHHHHH----CCCEEEEEECC---------------CHHHHHHHHHHHHHHCCCCCC---------------
T ss_conf 99999999999862----78079986558---------------889999999999998099756---------------
Q ss_pred EEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCEE
Q ss_conf 998335999888588758799861689826875211
Q T0557 109 VVYVPEADVTHKPIYKKATGLPGGAYRRIGSSDQRC 144 (145)
Q Consensus 109 vi~Ip~s~~~~~P~~~~~~~~~~~~Y~R~g~~~~~~ 144 (145)
+..| ..+-|+|+|.|...+.+|+|.-.|..+=
T Consensus 82 -~d~~---~~~GpVfLK~NqktG~~~ir~e~Glg~G 113 (139)
T 2q22_A 82 -IDLP---VVEGPVYIKLNGKNGLCYLDSYAGHHRG 113 (139)
T ss_dssp --CCC---CCSSSEEEEEETTTCCEEEEECCSCCBE
T ss_pred -CCCC---CCCCCEEEEECCCCCCEEEEECCCCCCE
T ss_conf -7677---8888779984588886899723786416
No 3
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=19.41 E-value=36 Score=14.22 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=8.0
Q ss_pred CEEEEECCCCCEEC
Q ss_conf 16898268752119
Q T0557 132 GAYRRIGSSDQRCV 145 (145)
Q Consensus 132 ~~Y~R~g~~~~~~~ 145 (145)
..|-|.|..+|+||
T Consensus 12 alysregaktrkcv 25 (71)
T 1gh9_A 12 ALYSREGAKTRKCV 25 (71)
T ss_dssp CEEEETTCSEEEET
T ss_pred HHHHCCCCCEEEEE
T ss_conf 76611464300134
No 4
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A
Probab=8.38 E-value=92 Score=12.10 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHCCC-CCCCCEE
Q ss_conf 79999999970887-7897079
Q T0557 30 KSVMETVIAFANEP-GLDGGYL 50 (145)
Q Consensus 30 ~~l~k~i~AFAN~~-~~~GG~l 50 (145)
..+.+++.+|.+.. .++||||
T Consensus 8 p~l~~al~qM~aMGFsneGGWL 29 (52)
T 1q02_A 8 PRLIESLSQMLSMGFSDEGGWL 29 (52)
T ss_dssp HHHHHHHHHHHTTTCCCTTSHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHH
T ss_conf 6899999999982878765299
No 5
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=7.57 E-value=1e+02 Score=11.85 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=7.4
Q ss_pred CCEEEEEEECCCC
Q ss_conf 7079998632776
Q T0557 47 GGYLLLGVDWAIN 59 (145)
Q Consensus 47 GG~liiGV~d~~~ 59 (145)
..+-|+|.+=+..
T Consensus 136 ~~~~I~aTDIs~~ 148 (274)
T 1af7_A 136 GRWKVFASDIDTE 148 (274)
T ss_dssp TSEEEEEEESCHH
T ss_pred CCEEEEEECCCHH
T ss_conf 9648999819999
No 6
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=6.14 E-value=1.2e+02 Score=11.44 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 847999999997088778970799986327763366
Q T0557 28 MGKSVMETVIAFANEPGLDGGYLLLGVDWAINDKGD 63 (145)
Q Consensus 28 ~~~~l~k~i~AFAN~~~~~GG~liiGV~d~~~~~~~ 63 (145)
..+++.+.+-.|.+. ..-||+|+|++++..+..
T Consensus 24 v~~e~~~a~~~lk~~---~~~~iif~Id~~~e~Iv~ 56 (164)
T 3daw_B 24 ISRDAFQALEKLSKK---QLNYVQLEIDIKNETIIL 56 (164)
T ss_dssp BCHHHHHHHHHHHTT---SCSEEEEEEETTTTEEEE
T ss_pred CCHHHHHHHHHHHCC---CCCEEEEEECCCCEEEEE
T ss_conf 699999999999749---977899998689629999
No 7
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=5.75 E-value=1.3e+02 Score=11.32 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEC-CCEEEEEEEECCCCCCCCEE
Q ss_conf 89707999863277633665322022020357899999987603885302458899846-97899998335999888588
Q T0557 45 LDGGYLLLGVDWAINDKGDTVYRPVGLPDPDKVQRDLASQCASMLNVALRPEMQLEQVG-GKTLLVVYVPEADVTHKPIY 123 (145)
Q Consensus 45 ~~GG~liiGV~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~i~~~~~~-g~~i~vi~Ip~s~~~~~P~~ 123 (145)
+.||-|.|-++-..+-. .++.++...+..+.. . ...+.|.-...-+..+++ .-.+..|.+..+|...-|++
T Consensus 59 gkGG~i~~~~Kte~EG~----VKv~gV~~~~~~E~F-~---V~s~~~S~~~~~Y~~~VD~~~~FDRI~~QD~P~~~~~I~ 130 (153)
T 1wcu_A 59 GKGGCIYLQVKTETEGL----VKVQGVRGYDETEAF-N---VGSFRSSSDFTEYKFEVDDEYQFDRIIVQDGPASNIPIY 130 (153)
T ss_dssp EEEEEEEEEEEESSCEE----EEEESCTTSCTTCCE-E---EEEECCEEEEEEEEEEEEEEEEESEEEEEETTCCCCCEE
T ss_pred CCCCEEEEEEECCCCCE----EEEEEECCCCCCCCE-E---EEEECCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEE
T ss_conf 46866999876266745----899975277743114-4---310036542079999615766523788713898898588
Q ss_pred EC
Q ss_conf 75
Q T0557 124 KK 125 (145)
Q Consensus 124 ~~ 125 (145)
++
T Consensus 131 ~r 132 (153)
T 1wcu_A 131 MR 132 (153)
T ss_dssp EE
T ss_pred EE
T ss_conf 88
No 8
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=4.67 E-value=1.5e+02 Score=10.93 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=6.4
Q ss_pred CEEEEEEECCCCC
Q ss_conf 0799986327763
Q T0557 48 GYLLLGVDWAIND 60 (145)
Q Consensus 48 G~liiGV~d~~~~ 60 (145)
|.|++++...+..
T Consensus 107 GvL~i~ig~aTKl 119 (357)
T 2apo_A 107 GVLPVALERATKT 119 (357)
T ss_dssp EEEEEEEGGGGGG
T ss_pred CCHHHEECHHHHH
T ss_conf 6553211865322
No 9
>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis mr-1} SCOP: b.82.1.16
Probab=3.63 E-value=1.9e+02 Score=10.46 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHCC--CCCEEEEEECCC
Q ss_conf 973799999997178--996577741578
Q T0557 1 MRSATDLLDELNAVD--ESARIEAKRASD 27 (145)
Q Consensus 1 m~~~~e~l~~L~~~~--E~~~lEfK~~~~ 27 (145)
|.+++++|+.|...+ |+-++ ++.+.
T Consensus 11 m~~a~~lI~~L~L~pHPEGG~f--~et~r 37 (170)
T 1yud_A 11 MQNADDFIKFLELEQHVEGGFY--RSSYR 37 (170)
T ss_dssp CCCHHHHHHHTTCEECTTSSEE--EEEEE
T ss_pred CCCHHHHHHHCCCCCCCCCCEE--EEEEE
T ss_conf 8999999998099768998669--98885
No 10
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=2.99 E-value=2.2e+02 Score=10.11 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=22.1
Q ss_pred HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 99971789965777415788479999999970887789707999863277
Q T0557 9 DELNAVDESARIEAKRASDMGKSVMETVIAFANEPGLDGGYLLLGVDWAI 58 (145)
Q Consensus 9 ~~L~~~~E~~~lEfK~~~~~~~~l~k~i~AFAN~~~~~GG~liiGV~d~~ 58 (145)
..|.++..++.+++...... ..++|-+||.. -|+-++.+.+.+
T Consensus 25 kal~~l~~G~~l~v~~dd~~---~~~di~~~~~~----~g~~~~~~~~~~ 67 (78)
T 1pav_A 25 KAYKQAKVGEVISVYSTDAG---TKKDAPAWIQK----SGQELVGVFDRN 67 (78)
T ss_dssp HHHTTSCTTCCEECCBSSSC---HHHHHHHHHHH----HTEEECCCCCCS
T ss_pred HHHHHCCCCCEEEEEECCCC---HHHHHHHHHHH----CCCEEEEEEEEC
T ss_conf 99984799979999908964---59999999998----699999999719
Done!