Query T0557 NeR70A, , 145 residues
Match_columns 145
No_of_seqs 116 out of 927
Neff 8.2
Searched_HMMs 15564
Date Tue May 25 15:41:36 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0557.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0557.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q22a1 d.365.1.1 (A:8-138) Un 66.0 2.6 0.00017 19.2 3.1 78 29-144 28-105 (131)
2 d2k0bx1 a.5.2.1 (X:1-52) Seque 5.8 71 0.0046 11.8 0.1 21 31-51 9-30 (52)
3 d1gh9a_ g.41.6.1 (A:) Hypothet 5.4 94 0.0061 11.2 1.5 13 133-145 13-25 (71)
4 d1qcrd2 a.3.1.3 (D:167-195) Cy 5.4 94 0.0061 11.2 2.1 22 20-41 3-25 (29)
5 d1gh9a_ g.41.6.1 (A:) Hypothet 5.4 95 0.0061 11.2 1.5 13 133-145 13-25 (71)
6 d1ex0a4 d.3.1.4 (A:191-510) Tr 3.6 1.3E+02 0.0085 10.5 2.5 30 26-57 62-91 (320)
7 d1a3qa2 b.2.5.3 (A:37-226) p52 3.6 1.3E+02 0.0085 10.4 5.5 30 93-122 40-69 (184)
8 d2gqea1 g.41.11.1 (A:3-31) Nuc 2.9 1.6E+02 0.01 10.1 0.5 13 133-145 10-22 (29)
9 d1yuda1 b.82.1.16 (A:1-158) Hy 2.8 1.7E+02 0.011 9.9 1.4 20 1-20 1-22 (158)
10 d1gjia2 b.2.5.3 (A:7-181) p65 2.8 1.7E+02 0.011 9.9 3.6 33 90-122 36-68 (175)
No 1
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=66.00 E-value=2.6 Score=19.25 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEE
Q ss_conf 47999999997088778970799986327763366532202202035789999998760388530245889984697899
Q T0557 29 GKSVMETVIAFANEPGLDGGYLLLGVDWAINDKGDTVYRPVGLPDPDKVQRDLASQCASMLNVALRPEMQLEQVGGKTLL 108 (145)
Q Consensus 29 ~~~l~k~i~AFAN~~~~~GG~liiGV~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~i~~~~~~g~~i~ 108 (145)
.+.|.+.+.+.+.. --|+.|||=-. ..+.....|++.....-.++.
T Consensus 28 ~~~L~~eL~~~~~~----adw~tiGImA~---------------s~~~Ai~ALrs~~~~~~~~~~--------------- 73 (131)
T d2q22a1 28 KESVRRALILITKL----SDYQILGICAD---------------TADEGLLAMKTYSHALGYEVP--------------- 73 (131)
T ss_dssp HHHHHHHHHHHHHT----SSEEEEEEEES---------------SHHHHHHHHHHHHHHTTCCCC---------------
T ss_pred HHHHHHHHHHHHHH----CCCEEEEEECC---------------CHHHHHHHHHHHHHHHCCCCC---------------
T ss_conf 99999999999873----78078887657---------------789999999999998098756---------------
Q ss_pred EEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCEE
Q ss_conf 998335999888588758799861689826875211
Q T0557 109 VVYVPEADVTHKPIYKKATGLPGGAYRRIGSSDQRC 144 (145)
Q Consensus 109 vi~Ip~s~~~~~P~~~~~~~~~~~~Y~R~g~~~~~~ 144 (145)
+.- +..+-|+|+|.|...+.+|+|.-.|..+=
T Consensus 74 -~d~---~~~~G~VfLK~NqktG~~~ir~e~Glg~G 105 (131)
T d2q22a1 74 -IDL---PVVEGPVYIKLNGKNGLCYLDSYAGHHRG 105 (131)
T ss_dssp --CC---CCCSSSEEEEEETTTCCEEEEECCSCCBE
T ss_pred -CCC---CCCCCCEEEEECCCCCCEEEEECCCCCEE
T ss_conf -777---78888679984488886899833885307
No 2
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.76 E-value=71 Score=11.85 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=12.2
Q ss_pred HHHHHHHHHHCCC-CCCCCEEE
Q ss_conf 9999999970887-78970799
Q T0557 31 SVMETVIAFANEP-GLDGGYLL 51 (145)
Q Consensus 31 ~l~k~i~AFAN~~-~~~GG~li 51 (145)
.+.+.+.+|.+.. .++||||-
T Consensus 9 ~l~~al~qM~aMGFsneGGWLt 30 (52)
T d2k0bx1 9 RLIESLSQMLSMGFSDEGGWLT 30 (52)
T ss_dssp THHHHHHHHHHHTCCCSSSCHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHH
T ss_conf 8999999999828787643999
No 3
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.42 E-value=94 Score=11.21 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=6.5
Q ss_pred EEEEECCCCCEEC
Q ss_conf 6898268752119
Q T0557 133 AYRRIGSSDQRCV 145 (145)
Q Consensus 133 ~Y~R~g~~~~~~~ 145 (145)
.|-|.|..+++||
T Consensus 13 LYskEg~kTrKCv 25 (71)
T d1gh9a_ 13 LYSREGAKTRKCV 25 (71)
T ss_dssp EEEETTCSEEEET
T ss_pred EECCCCCCCCEEE
T ss_conf 3103565522000
No 4
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.42 E-value=94 Score=11.21 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=14.8
Q ss_pred EEEEECCCC-HHHHHHHHHHHHC
Q ss_conf 777415788-4799999999708
Q T0557 20 IEAKRASDM-GKSVMETVIAFAN 41 (145)
Q Consensus 20 lEfK~~~~~-~~~l~k~i~AFAN 41 (145)
+||.-.... ...++++|++|.+
T Consensus 3 VeY~DGt~at~~q~a~DV~~FL~ 25 (29)
T d1qcrd2 3 LEFDDGTPATMSQVAKDVCTFLR 25 (29)
T ss_pred CEECCCCCCCHHHHHHHHHHHHH
T ss_conf 10079983869999999999998
No 5
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.36 E-value=95 Score=11.19 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=6.2
Q ss_pred EEEEECCCCCEEC
Q ss_conf 6898268752119
Q T0557 133 AYRRIGSSDQRCV 145 (145)
Q Consensus 133 ~Y~R~g~~~~~~~ 145 (145)
.|-|.|..+++||
T Consensus 13 LYskEg~kTrKCv 25 (71)
T d1gh9a_ 13 LYSREGAKTRKCV 25 (71)
T ss_dssp EEEETTCSEEEET
T ss_pred EEECCCCCEEEEE
T ss_conf 5412464101344
No 6
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=3.61 E-value=1.3e+02 Score=10.45 Aligned_cols=30 Identities=20% Similarity=0.024 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 78847999999997088778970799986327
Q T0557 26 SDMGKSVMETVIAFANEPGLDGGYLLLGVDWA 57 (145)
Q Consensus 26 ~~~~~~l~k~i~AFAN~~~~~GG~liiGV~d~ 57 (145)
+..|-.+.+.|+||.|+. ++--++.|=...
T Consensus 62 R~dPV~V~RviSAmvNs~--dd~GVL~G~Ws~ 91 (320)
T d1ex0a4 62 RGNPIKVSRVGSAMVNAK--DDEGVLVGSFDN 91 (320)
T ss_dssp TTCHHHHHHHHHHHHBCS--TTCSSEEECCSS
T ss_pred CCCCEEEEEEEHHHCCCC--CCCCEEECCCCC
T ss_conf 489726540104321567--788158416777
No 7
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.60 E-value=1.3e+02 Score=10.45 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=15.3
Q ss_pred CEEEEEEEEECCCEEEEEEEECCCCCCCCE
Q ss_conf 024588998469789999833599988858
Q T0557 93 LRPEMQLEQVGGKTLLVVYVPEADVTHKPI 122 (145)
Q Consensus 93 ~~~~i~~~~~~g~~i~vi~Ip~s~~~~~P~ 122 (145)
.+|.++...+.|.-.++|.+--.+...+||
T Consensus 40 t~PtVkl~ny~g~a~i~vslvT~d~p~rpH 69 (184)
T d1a3qa2 40 TYPTVKICNYEGPAKIEVDLVTHSDPPRAH 69 (184)
T ss_dssp CCCEEEEETCCSSEEEEEEEECSSSSCCBC
T ss_pred CCCEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf 588699834888669999999669988667
No 8
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.94 E-value=1.6e+02 Score=10.08 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=8.8
Q ss_pred EEEEECCCCCEEC
Q ss_conf 6898268752119
Q T0557 133 AYRRIGSSDQRCV 145 (145)
Q Consensus 133 ~Y~R~g~~~~~~~ 145 (145)
-|+|+..++-+||
T Consensus 10 C~v~N~~~~~~Cv 22 (29)
T d2gqea1 10 CLVQNKPEAIKCV 22 (29)
T ss_dssp SCCEECTTCSBCS
T ss_pred EEEECHHHCCEEE
T ss_conf 4817712478870
No 9
>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}
Probab=2.76 E-value=1.7e+02 Score=9.95 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHCC--CCCEE
Q ss_conf 973799999997178--99657
Q T0557 1 MRSATDLLDELNAVD--ESARI 20 (145)
Q Consensus 1 m~~~~e~l~~L~~~~--E~~~l 20 (145)
|.+++++|+.|-..+ |+-+.
T Consensus 1 M~~a~~lI~~L~L~pHPEGG~f 22 (158)
T d1yuda1 1 MQNADDFIKFLELEQHVEGGFY 22 (158)
T ss_dssp CCCHHHHHHHTTCEECTTSSEE
T ss_pred CCCHHHHHHHHCCCCCCCCCEE
T ss_conf 9898999998199618998659
No 10
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=2.75 E-value=1.7e+02 Score=9.94 Aligned_cols=33 Identities=21% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEEECCCEEEEEEEECCCCCCCCE
Q ss_conf 853024588998469789999833599988858
Q T0557 90 NVALRPEMQLEQVGGKTLLVVYVPEADVTHKPI 122 (145)
Q Consensus 90 ~p~~~~~i~~~~~~g~~i~vi~Ip~s~~~~~P~ 122 (145)
+...+|.++...+.|.-++++.+--.+...+||
T Consensus 36 ~~kt~PtVkl~~y~g~a~i~vslvT~d~p~rPH 68 (175)
T d1gjia2 36 NNKTFPSIQILNYFGKVKIRTTLVTKNEPYKPH 68 (175)
T ss_dssp TTCCCCEEEEETCCSCEEEEEEEECSSSSCCBC
T ss_pred CCCCCCEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf 888698599834778779999998679998777
Done!