Query         T0558 ZP_01960044.1, Bacteroides caccae, 294 residues
Match_columns 294
No_of_seqs    145 out of 754
Neff          10.3
Searched_HMMs 11830
Date          Tue May 25 16:00:21 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0558.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0558.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF10282 Muc_lac_enz:  3-carbox  99.5 3.1E-09 2.6E-13   80.8  31.7  180   33-212    13-222 (345)
  2 PF05935 Arylsulfotrans:  Aryls  99.4 4.7E-10 3.9E-14   86.8  22.8  256   21-279   113-460 (471)
  3 PF02239 Cytochrom_D1:  Cytochr  99.4 1.1E-09 9.4E-14   84.1  24.5  195   24-221     7-211 (369)
  4 PF10282 Muc_lac_enz:  3-carbox  99.3 3.7E-09 3.1E-13   80.3  24.3  242   14-273    39-328 (345)
  5 PF02239 Cytochrom_D1:  Cytochr  99.2 1.1E-08 9.5E-13   76.7  21.2  257   17-281    42-338 (369)
  6 PF07433 DUF1513:  Protein of u  99.2 2.2E-07 1.9E-11   67.3  27.5  220   20-252    15-278 (305)
  7 PF08450 SGL:  SMP-30/Gluconola  99.0   3E-07 2.5E-11   66.3  22.5  189   22-223    11-223 (246)
  8 PF08450 SGL:  SMP-30/Gluconola  99.0 1.1E-06 9.2E-11   62.2  23.9  200   59-278     4-221 (246)
  9 PF08662 eIF2A:  Eukaryotic tra  98.9 4.1E-07 3.5E-11   65.3  20.5  136   73-218    38-184 (194)
 10 PF08662 eIF2A:  Eukaryotic tra  98.9 2.5E-07 2.1E-11   66.8  18.3  137   32-180    38-187 (194)
 11 PF05935 Arylsulfotrans:  Aryls  98.5 2.2E-06 1.8E-10   60.0  13.9  211   63-281   112-403 (471)
 12 PF07433 DUF1513:  Protein of u  98.4 9.5E-05   8E-09   48.1  21.2  192   17-213    56-286 (305)
 13 PF08553 VID27:  VID27 cytoplas  98.3 2.3E-05 1.9E-09   52.6  15.3  140   67-211   488-640 (788)
 14 PF06433 Me-amine-dh_H:  Methyl  98.3 0.00013 1.1E-08   47.2  21.9  138   32-173    66-214 (342)
 15 PF04762 IKI3:  IKI3 family;  I  98.2 0.00023 1.9E-08   45.3  22.1  155   55-211    76-286 (928)
 16 PF04053 Coatomer_WDAD:  Coatom  97.8 0.00092 7.8E-08   40.9  24.9  200   56-277    34-262 (444)
 17 PF04841 Vps16_N:  Vps16, N-ter  97.8 0.00092 7.8E-08   40.9  26.3  250   18-276    45-312 (410)
 18 PF04762 IKI3:  IKI3 family;  I  97.8 0.00097 8.2E-08   40.7  27.3  153   16-173   125-332 (928)
 19 PF05096 Glu_cyclase_2:  Glutam  97.7  0.0013 1.1E-07   39.8  15.2  199   43-251    33-252 (264)
 20 PF00930 DPPIV_N:  Dipeptidyl p  97.7  0.0014 1.2E-07   39.5  23.6  200   20-222     1-277 (353)
 21 PF00930 DPPIV_N:  Dipeptidyl p  97.6   0.002 1.7E-07   38.4  20.1  228   15-253    46-350 (353)
 22 PF05096 Glu_cyclase_2:  Glutam  97.5  0.0029 2.5E-07   37.2  13.3  151   92-252    42-195 (264)
 23 PF08553 VID27:  VID27 cytoplas  96.9  0.0055 4.7E-07   35.2  10.4  141   22-170   486-639 (788)
 24 PF06433 Me-amine-dh_H:  Methyl  96.9   0.011 8.9E-07   33.2  22.2  175   32-218    16-219 (342)
 25 PF07250 Glyoxal_oxid_N:  Glyox  96.8   0.013 1.1E-06   32.6  14.7  182   31-222     7-207 (243)
 26 PF04841 Vps16_N:  Vps16, N-ter  96.8   0.013 1.1E-06   32.6  21.4   50   76-128    63-112 (410)
 27 PF07250 Glyoxal_oxid_N:  Glyox  96.6   0.017 1.4E-06   31.7  14.0  139   34-175    47-200 (243)
 28 PF03178 CPSF_A:  CPSF A subuni  96.6   0.018 1.5E-06   31.4  14.1  170   33-212     2-202 (321)
 29 PF03022 MRJP:  Major royal jel  96.5   0.019 1.6E-06   31.4  16.1   60   33-92     34-106 (287)
 30 PF00400 WD40:  WD domain, G-be  96.1   0.005 4.2E-07   35.5   5.9   38  127-170     2-39  (39)
 31 PF04053 Coatomer_WDAD:  Coatom  95.8   0.043 3.6E-06   28.7  21.4  172   14-210    35-223 (444)
 32 PF01011 PQQ:  PQQ enzyme repea  95.8  0.0073 6.1E-07   34.3   5.4   32   25-56      2-33  (38)
 33 PF02897 Peptidase_S9_N:  Proly  95.4   0.057 4.8E-06   27.8  12.6   54   59-113   129-189 (415)
 34 PF00400 WD40:  WD domain, G-be  94.3   0.039 3.3E-06   29.0   5.7   36   87-122     4-39  (39)
 35 PF05694 SBP56:  56kDa selenium  91.5    0.26 2.2E-05   23.0  13.8  145   23-171    88-276 (461)
 36 PF10168 Nup88:  Nuclear pore c  89.2     0.4 3.4E-05   21.6  15.3  107   24-132    34-187 (717)
 37 PF12234 Rav1p_C:  RAVE protein  88.6    0.44 3.7E-05   21.3  10.2   46   75-120    52-100 (630)
 38 PF07569 Hira:  TUP1-like enhan  84.0    0.73 6.2E-05   19.7   8.5   26  103-128    19-44  (220)
 39 PF11768 DUF3312:  Protein of u  83.2    0.78 6.6E-05   19.5  11.6   70  145-214   261-330 (544)
 40 PF10647 Gmad1:  Lipoprotein Lp  76.3     1.3 0.00011   17.9  19.5  144   55-203    24-186 (253)
 41 PF05787 DUF839:  Bacterial pro  75.5     1.3 0.00011   17.8   8.6   13  235-247   440-452 (524)
 42 PF02333 Phytase:  Phytase;  In  75.4     1.3 0.00011   17.8  15.8  191   19-220    63-299 (381)
 43 PF03088 Str_synth:  Strictosid  74.3     1.4 0.00012   17.6   7.9   35  162-196    35-70  (89)
 44 PF08194 DIM:  DIM protein;  In  71.1    0.91 7.7E-05   19.0   2.2   30    1-30      1-31  (36)
 45 PF00780 CNH:  CNH domain;  Int  66.3     2.1 0.00018   16.4  23.1  227   19-287     3-264 (275)
 46 PF00879 Defensin_propep:  Defe  64.5     1.4 0.00011   17.8   2.0   24    1-24      1-24  (52)
 47 PF09792 But2:  Ubiquitin 3 bin  63.9     2.3 0.00019   16.1   8.6   83    1-91      1-86  (446)
 48 PF10566 Glyco_hydro_97:  Glyco  63.8     2.3 0.00019   16.1   3.6   51    1-52      1-53  (643)
 49 PF01436 NHL:  NHL repeat;  Int  59.0     2.8 0.00023   15.5   4.0   22  185-206     4-25  (28)
 50 PF05777 Acp26Ab:  Drosophila a  55.2     3.1 0.00026   15.2   2.5   28    1-29      1-28  (90)
 51 PF02261 Asp_decarbox:  Asparta  54.9     2.1 0.00018   16.4   1.6   72  203-274    41-115 (116)
 52 PF01453 B_lectin:  D-mannose b  53.2     3.4 0.00029   14.8   6.5   19  161-179    26-44  (114)
 53 PF06649 DUF1161:  Protein of u  50.9       3 0.00026   15.2   1.9   17    1-17      1-17  (75)
 54 PF05399 EVI2A:  Ectropic viral  50.7     2.4  0.0002   15.9   1.3   11   31-41     32-42  (227)
 55 PF10956 DUF2756:  Protein of u  50.2     2.6 0.00022   15.7   1.4   19    1-19      1-19  (104)
 56 PF05264 CfAFP:  Choristoneura   47.5     1.6 0.00013   17.2   0.0   11    1-11      1-11  (137)
 57 PF10614 Tafi-CsgF:  Curli prod  43.7     4.7  0.0004   13.8   2.0   26    1-27      1-26  (142)
 58 PF10279 Latarcin:  Latarcin pr  43.0     2.1 0.00017   16.4   0.0   12    1-12      1-12  (105)
 59 PF03646 FlaG:  FlaG protein;    39.4     5.4 0.00046   13.4   2.7   16   35-50     70-85  (107)
 60 PF01939 DUF91:  Protein of unk  39.1     5.4 0.00046   13.3   5.4   14   60-73     30-43  (228)
 61 PF07676 PD40:  WD40-like Beta   36.8     5.9  0.0005   13.1   4.4   15   99-113    13-27  (39)
 62 PF07202 Tcp10_C:  T-complex pr  34.1     6.5 0.00055   12.8  19.4   98  151-276    80-177 (179)
 63 PF04202 Mfp-3:  Foot protein 3  32.4     6.9 0.00058   12.6   1.6   23    1-23      1-25  (71)
 64 PF01731 Arylesterase:  Arylest  31.9       7 0.00059   12.5   3.6   28  145-172    56-84  (86)
 65 PF00993 MHC_II_alpha:  Class I  31.3     7.1  0.0006   12.5   2.5   20  201-220    23-42  (82)
 66 PF06422 PDR_CDR:  CDR ABC tran  30.7     5.3 0.00045   13.4   0.5   10    2-11     50-59  (103)
 67 PF07403 DUF1505:  Protein of u  28.0     8.1 0.00068   12.1   1.5   24    1-24      1-24  (114)
 68 PF10907 DUF2749:  Protein of u  26.9     8.4 0.00071   12.0   1.5   28    1-31      1-28  (66)
 69 PF11714 Inhibitor_I53:  Thromb  26.8     8.5 0.00071   11.9   1.1   18    1-18      1-18  (78)
 70 PF03548 LolA:  Outer membrane   25.6     8.9 0.00075   11.8   4.6   41   32-86     26-66  (165)
 71 PF07172 GRP:  Glycine rich pro  25.2       9 0.00076   11.7   1.2   12    2-13      4-15  (95)
 72 PF03527 RHS:  RHS protein;  In  22.8     9.9 0.00084   11.4   1.7   14  266-279    15-28  (41)
 73 PF05436 MF_alpha_N:  Mating fa  22.8      10 0.00084   11.4   2.1   23    1-23      1-23  (86)
 74 PF12273 RCR:  Chitin synthesis  21.3      11  0.0009   11.2   1.3   14    4-17      5-18  (130)
 75 PF08801 Nucleoporin_N:  Nup133  21.1      11 0.00091   11.2  11.1   34  145-178   194-229 (424)
 76 PF10793 Gloverin:  Gloverin-li  20.6      11 0.00093   11.1   1.2   20    4-23      5-24  (175)
 77 PF10395 Utp8:  Utp8 family      20.5      11 0.00093   11.1  17.0   88   35-123    53-158 (670)

No 1  
>PF10282 Muc_lac_enz:  3-carboxy-cis,cis-muconate lactonizing enzyme; PDB: 3hfq_B 3fgb_B 1jof_F 1ri6_A 1l0q_B 3bws_B.
Probab=99.46  E-value=3.1e-09  Score=80.79  Aligned_cols=180  Identities=16%  Similarity=0.123  Sum_probs=73.5

Q ss_pred             CEEEEEEC--CCCEEEEEEECCCCCCCCEEEEECCCCEEEEE------CCEEEEEECCCC--CE--EEEECCCCCCEEEE
Q ss_conf             86999988--78829999944998731164790798399841------882899752677--03--67723777631487
Q T0558            33 NKIAIINK--DTKEIVWEYPLEKGWECNSVAATKAGEILFSY------SKGAKMITRDGR--EL--WNIAAPAGCEMQTA  100 (294)
Q Consensus        33 ~~i~~~d~--~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~------~~~v~~~~~~~~--~~--~~~~~~~~~~v~~~  100 (294)
                      +.|+.++.  ++|++...........+..++++||+++|++.      .+.+..|..+..  .+  .............+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~ps~l~~s~~~~~LY~~~~~~~~~g~v~~~~i~~~~g~l~~~~~~~~~g~~p~~~   92 (345)
T PF10282_consen   13 GGIYVYRFDDETGTLTLVSTVAEGGNPSYLALSPDGKRLYAVNESGTESGGVSSFRIDPDTGSLTLLNTVPSGGSSPCHL   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEETTS--SSEEE-TTSSEEEEEECCCCTTTEEEEEEEES----EEEEEEEES--EEECEE
T ss_pred             CCEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEE
T ss_conf             97899998688886128112036899847999768987999860578886189998679753138810205789985699


Q ss_pred             EECCCCCEEEEEECCC-CEEEEEC-CCCCEEEEEECCCCC-------CCCCCCCCEEEECCCCCEEEEEE-CCCEEEEEE
Q ss_conf             8737875899970589-7999985-689588999706776-------77667400899969989999974-698899993
Q T0558           101 RILPDGNALVAWCGHP-STILEVN-MKGEVLSKTEFETGI-------ERPHAQFRQINKNKKGNYLVPLF-ATSEVREIA  170 (294)
Q Consensus       101 ~~~~dg~~l~~~s~~~-~~~~~~~-~~G~~~~~~~~~~~~-------~~~~~~~~~~~~s~dG~~i~~g~-~d~~i~~~d  170 (294)
                      +.+|+|++++++.... .+.++.. .+|.+..........       .......-.+.++|||+++++.. ....|.+++
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~G~~~~~~~~~~~~g~g~~~~rq~~~h~H~v~~sPdg~~l~v~dlG~D~i~~~~  172 (345)
T PF10282_consen   93 AVDPDGRYLFVANYGGGSVSVYPLDDDGSLGEQVQVIQHEGSGPNPDRQEGPHPHQVVFSPDGKYLFVPDLGADRIYVYD  172 (345)
T ss_dssp             EEETTTTEEEEEEST---EEEEEE-----EEEEEEEE--------TTT-TT--EEEEEE-TTSSEEEEEECCCTEEEEEE
T ss_pred             EECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf             97699999999984699899999277556442101002578887656678994308898899999999978999799999


Q ss_pred             CCCC---EEE----EEECCCEEEEEEEECCCCEE-EECCCCCEEEEEECC
Q ss_conf             7885---889----85169734898873489689-973589879999878
Q T0558           171 PNGQ---LLN----SVKLSGTPFSSAFLDNGDCL-VACGDAHCFVQLNLE  212 (294)
Q Consensus       171 ~~g~---~~~----~~~~~~~~~~~~~~~~g~~~-v~~~~~~~i~~~d~~  212 (294)
                      .+..   ...    ....+..|..+.++|+|+++ +++..++.+.+++..
T Consensus       173 ~~~~~~~l~~~~~~~~~~g~gPRh~~f~pdg~~~YV~~E~s~~V~v~~~~  222 (345)
T PF10282_consen  173 FDPGTGKLTPVPSIKVPPGSGPRHLAFSPDGRYAYVVNELSNTVSVYDYD  222 (345)
T ss_dssp             E-TT--TEEEEEEEECE----EEEEEE-TTTTEEEEEETTTTEEEEEEET
T ss_pred             EECCCCEEEECCEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEEC
T ss_conf             70787323242202157789984699958999899974678848999951


No 2  
>PF05935 Arylsulfotrans:  Arylsulfotransferase (ASST);  InterPro: IPR010262   This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate .; PDB: 3ett_B 3elq_B 3ets_A.
Probab=99.38  E-value=4.7e-10  Score=86.81  Aligned_cols=256  Identities=17%  Similarity=0.201  Sum_probs=173.0

Q ss_pred             CCCCEEEEE---CCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCEEEEEECCCCCEEEEECCCCC--
Q ss_conf             888589997---479869999887882999994499873116479079839984188289975267703677237776--
Q T0558            21 SPQHLLVGG---SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGC--   95 (294)
Q Consensus        21 ~~~~~l~~g---s~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~~~~v~~~~~~~~~~~~~~~~~~~--   95 (294)
                      .+.-+++.+   ......+++|. .|+++|.++....... .+...+||.+++.....+..+|..|+.+|++..+...  
T Consensus       113 ~~gLy~~~~~~~~~~~~~~i~D~-~G~vrW~~~~~~~~~~-~~~~~~nG~l~~~~~~~~~e~D~~G~vi~~~~l~~~~~~  190 (471)
T PF05935_consen  113 EDGLYFVNPNDWDYQPGPYIYDN-NGNVRWYLPSDSGRDN-RFKRLDNGHLLFGSGGRYYEYDWLGKVIWQYDLPNGYYD  190 (471)
T ss_dssp             TT-EEEEEETT---EEEEEEEE-----EEEEE-GGGT-----EEE-----EEEE---EEEEE-----EEEEEE-------
T ss_pred             CCCEEEEECCCCCCCCEEEEECC-CCCEEEEECCCCCCCC-EEEECCCCCEEEEECCEEEEECCCCCEEEEEECCCCCCC
T ss_conf             78689996777777760699959-9869999527778761-478738986999978848998889978999987887776


Q ss_pred             CEEEEEECCCCCEEEEEEC-------------CCCEEEEECCCCCEEEEEECCCCCCCCC--------------------
Q ss_conf             3148787378758999705-------------8979999856895889997067767766--------------------
Q T0558            96 EMQTARILPDGNALVAWCG-------------HPSTILEVNMKGEVLSKTEFETGIERPH--------------------  142 (294)
Q Consensus        96 ~v~~~~~~~dg~~l~~~s~-------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~--------------------  142 (294)
                      .-+.+...|+|++|+.+..             ...+ +..+.+|+++|++..........                    
T Consensus       191 ~HHd~~~~~nGn~Li~~~~~~~~~~~~~~~~~~D~i-iEid~tG~vv~~W~~~dhld~~~~~~~~~~~~~~~~~~~~~~~  269 (471)
T PF05935_consen  191 FHHDFQELPNGNILILAYERRYADEGKDGWTVEDVI-IEIDETGEVVWEWDASDHLDPYRDTNLKDLNDPFGDNPGSGGG  269 (471)
T ss_dssp             --S-EEE-----EEEEE--TTEE----EE---S-EE-EEE-----EEEEEEGGGTS-TT--S---B-T------------
T ss_pred             CCEEEEECCCCCEEEEEEECCCCCCCCCCCEEECEE-EEECCCCCEEEEECHHHCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf             430118969997999997311124677886882689-9998999699998766768800065000255566756688998


Q ss_pred             ---CCCCEEEECC-CCCEEEEEECCCEEEEEE-CCCCEEEEEECCC------------E------------EEEEEEECC
Q ss_conf             ---7400899969-989999974698899993-7885889851697------------3------------489887348
Q T0558           143 ---AQFRQINKNK-KGNYLVPLFATSEVREIA-PNGQLLNSVKLSG------------T------------PFSSAFLDN  193 (294)
Q Consensus       143 ---~~~~~~~~s~-dG~~i~~g~~d~~i~~~d-~~g~~~~~~~~~~------------~------------~~~~~~~~~  193 (294)
                         ..++++.+.+ ||.+|++.+....|...| .+++.+|......            +            -+...+.++
T Consensus       270 ~Dw~HiNsv~yd~~d~~iliS~R~~s~V~~Id~~tg~I~W~lG~~~~~~~~~~~~~l~p~~~~~~~~~~~~QH~a~~~~~  349 (471)
T PF05935_consen  270 WDWFHINSVDYDPDDDSILISSRHQSTVIKIDYRTGEIKWILGGKGGWSKDYQDYLLTPVDGDGDFDWFWGQHDARFIPD  349 (471)
T ss_dssp             --S--EEEEEEETTTTEEEEEETT----EEE----S---EE-S------TTTGGGB--BB-SSSS----SS-EEEEE---
T ss_pred             CCCCCCCCCEECCCCCCEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCEECCC
T ss_conf             88737356077789993999767755899995699868999479877673101200343566877650003542078189


Q ss_pred             C---CEEEECC------------------CCCEEEEEECCCC--EEEEEECCCCCCCEEECCCCCEEECCC-CCEEEEEC
Q ss_conf             9---6899735------------------8987999987898--599984488764114113453489389-98999804
Q T0558           194 G---DCLVACG------------------DAHCFVQLNLESN--RIVRRVNANDIEGVQLFFVAQLFPLQN-GGLYICNW  249 (294)
Q Consensus       194 g---~~~v~~~------------------~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~i~~~  249 (294)
                      +   .+++...                  +....+.+|.+.+  +++|++.............++.+.++| |++++...
T Consensus       350 ~~~~~i~~FDNg~~~~~~~~~~~~~~~~~Sr~~~y~ID~~~~Tv~~v~~y~~~~g~~~yS~~~s~~q~L~n~gn~li~~G  429 (471)
T PF05935_consen  350 GPQGNILVFDNGNGRGYSQPNLVWMKDNYSRGVEYKIDENNMTVEQVWEYGKPRGNDFYSPSQSSAQYLPNTGNTLIGSG  429 (471)
T ss_dssp             -----EEEEE-----TTS--SSCCG-----EEEEEEE-S----EEEEEEE------TT--SS----EEETTTTEEE----
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCEEEECC
T ss_conf             97279999958986666776655677753436999985899869999997589887641575122058369998999746


Q ss_pred             CCCEEECCCCCCCEEEEECCCC-CEEEEEEC
Q ss_conf             6771430247775699990899-89999835
Q T0558           250 QGHDREAGKGKHPQLVEIDSEG-KVVWQLND  279 (294)
Q Consensus       250 ~~~~~~~~~~~~~~~~~i~~~G-~~vW~~~~  279 (294)
                      ..............+.+++..+ +++.++.-
T Consensus       430 ~~g~~~~~~~~~~~i~E~~~~~~~v~~e~~~  460 (471)
T PF05935_consen  430 SAGLFSNGKPTTGVITEIDYETKEVVFEIKV  460 (471)
T ss_dssp             -BTTT----B-B--EEEEETTT--EEEEEEE
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCEEEEEEEE
T ss_conf             5653256888875169996699769999996


No 3  
>PF02239 Cytochrom_D1:  Cytochrome D1 heme domain;  InterPro: IPR003143 Cytochrome cd1 (nitrite reductase) catalyses the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 haem-binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 haem iron of the active site in the oxidized state .; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0050421 nitrite reductase (NO-forming) activity, 0006118 electron transport, 0046209 nitric oxide metabolic process, 0042597 periplasmic space; PDB: 1aof_B 1hj5_B 1hj3_A 1aom_B 1h9x_B 1dy7_B 1hcm_B 1e2r_B 1qks_B 1aoq_B ....
Probab=99.37  E-value=1.1e-09  Score=84.06  Aligned_cols=195  Identities=12%  Similarity=0.141  Sum_probs=139.5

Q ss_pred             CEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEE--CCEEEEEECCCCCEEE-EECCCCCCEEEE
Q ss_conf             5899974798699998878829999944998731164790798399841--8828997526770367-723777631487
Q T0558            24 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY--SKGAKMITRDGRELWN-IAAPAGCEMQTA  100 (294)
Q Consensus        24 ~~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~--~~~v~~~~~~~~~~~~-~~~~~~~~v~~~  100 (294)
                      -.+++-.++++|.++|.+|.+++.+.+.+.. ....+.++|||++++..  |+.+.++|.....+.+ ...+.  ...++
T Consensus         7 l~~V~~~~~~~V~viD~~t~~v~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~vv~~v~~G~--~~~gi   83 (369)
T PF02239_consen    7 LFVVVERGDGSVSVIDGATNKVLATIPTGGA-PHAGVKFSPDGRYLYVASRDGWVSVIDLWTGKVVATVKVGS--NPRGI   83 (369)
T ss_dssp             -EEEEBTT---EEEE-----SEEEEE--------EEEE------EEEEE---SEEEEEETTSSSEEEEEE-----B----
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEECCCC-CEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCC--CCCEE
T ss_conf             8999965899699998999869999727987-51587656888689997799729999898557999995487--86326


Q ss_pred             EECCCCCEEEEEEC-CCCEEEEECCCCCEEEEEECCCCCC-CCCCCCCEEEECCCCC-EEEEEECCCEEEEEECCC---C
Q ss_conf             87378758999705-8979999856895889997067767-7667400899969989-999974698899993788---5
Q T0558           101 RILPDGNALVAWCG-HPSTILEVNMKGEVLSKTEFETGIE-RPHAQFRQINKNKKGN-YLVPLFATSEVREIAPNG---Q  174 (294)
Q Consensus       101 ~~~~dg~~l~~~s~-~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~s~dG~-~i~~g~~d~~i~~~d~~g---~  174 (294)
                      ++++||+++++++. .+++.+++..+.+.+.......... ....++.++..++... ++++....+.|.+.|.+.   .
T Consensus        84 a~S~DGk~v~v~n~~~~~v~viD~~tle~v~~i~~~~~~~~~~~sRv~aIv~s~~~~~fVv~lkd~~~I~iVdy~d~~~~  163 (369)
T PF02239_consen   84 AVSPDGKYVYVANYWPGTVVVIDAETLEPVKTIPTGGYTGDGPESRVAAIVASPYRPEFVVNLKDTGEIWIVDYSDPKNL  163 (369)
T ss_dssp             EE--TTT-EEE--TBTTEEEEE------EEEEEE-----TTTS---EEEEEE-SSSSEEEEEES----EEEEETTTSSCE
T ss_pred             EECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEECCCCCC
T ss_conf             98789989999955899259980677640356530234465668732556717899779999803887999970467754


Q ss_pred             EEEEEECCCEEEEEEEECCCCEEEE-CCCCCEEEEEECCCCEEEEEEC
Q ss_conf             8898516973489887348968997-3589879999878985999844
Q T0558           175 LLNSVKLSGTPFSSAFLDNGDCLVA-CGDAHCFVQLNLESNRIVRRVN  221 (294)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~i~~~d~~~g~~~~~~~  221 (294)
                      .......+..++...+.++++++++ ....+.+.++|.++++++..+.
T Consensus       164 ~~~~i~~g~~l~Dg~~d~~gRy~lva~~~~n~i~vvd~~~~~~v~~i~  211 (369)
T PF02239_consen  164 KVRTIKVGRFLHDGGFDPDGRYFLVAANGSNKIAVVDTKTGKLVALID  211 (369)
T ss_dssp             EEEEE---TTB------TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CEECCCCCCCCCCCCCCCCCEEEEEHHCCCCCEEEEECCCCEEEEEEC
T ss_conf             200024543433566786301777000457821256236623899851


No 4  
>PF10282 Muc_lac_enz:  3-carboxy-cis,cis-muconate lactonizing enzyme; PDB: 3hfq_B 3fgb_B 1jof_F 1ri6_A 1l0q_B 3bws_B.
Probab=99.31  E-value=3.7e-09  Score=80.26  Aligned_cols=242  Identities=14%  Similarity=0.138  Sum_probs=144.0

Q ss_pred             HHHCCCCCCCCEEEEECC----CCEEEEEECCC--CEE--EEEEECCCCCCCCEEEEECCCCEEEEE---CCEEEEEECC
Q ss_conf             320014788858999747----98699998878--829--999944998731164790798399841---8828997526
Q T0558            14 APFAQGSSPQHLLVGGSG----WNKIAIINKDT--KEI--VWEYPLEKGWECNSVAATKAGEILFSY---SKGAKMITRD   82 (294)
Q Consensus        14 ~~~~~~s~~~~~l~~gs~----~~~i~~~d~~t--g~~--~w~~~~~~~~~~~~~~~~pdG~~l~s~---~~~v~~~~~~   82 (294)
                      +.|...++++++|.+.+.    ++.|..|+.+.  |++  +-+.+. .+..+..++++|||++++..   ++.+.++..+
T Consensus        39 ps~l~~s~~~~~LY~~~~~~~~~g~v~~~~i~~~~g~l~~~~~~~~-~g~~p~~~~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   39 PSYLALSPDGKRLYAVNESGTESGGVSSFRIDPDTGSLTLLNTVPS-GGSSPCHLAVDPDGRYLFVANYGGGSVSVYPLD  117 (345)
T ss_dssp             -SSEEE-TTSSEEEEEECCCCTTTEEEEEEEES----EEEEEEEES---EEECEEEEETTTTEEEEEEST---EEEEEE-
T ss_pred             CCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEEECC-CCCCCEEEEECCCCCEEEEEECCCCEEEEEEEC
T ss_conf             8479997689879998605788861899986797531388102057-899856999769999999998469989999927


Q ss_pred             C--CCEEEE--E----------CCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEC--CCCCEEEEEECCCCCCCCCCCC
Q ss_conf             7--703677--2----------377763148787378758999705-897999985--6895889997067767766740
Q T0558            83 G--RELWNI--A----------APAGCEMQTARILPDGNALVAWCG-HPSTILEVN--MKGEVLSKTEFETGIERPHAQF  145 (294)
Q Consensus        83 ~--~~~~~~--~----------~~~~~~v~~~~~~~dg~~l~~~s~-~~~~~~~~~--~~G~~~~~~~~~~~~~~~~~~~  145 (294)
                      .  ......  .          ......++.+.++|||++++++.. .+.+.+++.  .++++......   ........
T Consensus       118 ~~G~~~~~~~~~~~~g~g~~~~rq~~~h~H~v~~sPdg~~l~v~dlG~D~i~~~~~~~~~~~l~~~~~~---~~~~g~gP  194 (345)
T PF10282_consen  118 DDGSLGEQVQVIQHEGSGPNPDRQEGPHPHQVVFSPDGKYLFVPDLGADRIYVYDFDPGTGKLTPVPSI---KVPPGSGP  194 (345)
T ss_dssp             ----EEEEEEEE--------TTT-TT--EEEEEE-TTSSEEEEEECCCTEEEEEEE-TT--TEEEEEEE---ECE----E
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEEECCCCEEEECCEE---CCCCCCCC
T ss_conf             755644210100257888765667899430889889999999997899979999970787323242202---15778998


Q ss_pred             CEEEECCCCCEEEEEEC-CCEEEEEECC--CCEEE---EEEC-------CCEEEEEEEECCCCEEEE-CCCCCEEEEEEC
Q ss_conf             08999699899999746-9889999378--85889---8516-------973489887348968997-358987999987
Q T0558           146 RQINKNKKGNYLVPLFA-TSEVREIAPN--GQLLN---SVKL-------SGTPFSSAFLDNGDCLVA-CGDAHCFVQLNL  211 (294)
Q Consensus       146 ~~~~~s~dG~~i~~g~~-d~~i~~~d~~--g~~~~---~~~~-------~~~~~~~~~~~~g~~~v~-~~~~~~i~~~d~  211 (294)
                      +++.|+|||+++++... +++|.+++..  ...+.   ....       ...+..+.++|||+++++ ....+.|.+++.
T Consensus       195 Rh~~f~pdg~~~YV~~E~s~~V~v~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~I~~spdG~~lyvsnr~~~sI~vf~i  274 (345)
T PF10282_consen  195 RHLAFSPDGRYAYVVNELSNTVSVYDYDSSDGTLTIVQTVSTLPEGPTGANSPAGIALSPDGKFLYVSNRGSNSISVFDI  274 (345)
T ss_dssp             EEEEE-TTTTEEEEEETTTTEEEEEEETTTT-EEEEEEEEESSETTCESBCCEEEEEE-----EEEEEECCTTEEEEEEE
T ss_pred             CEEEECCCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEE
T ss_conf             46999589998999746788489999516764159989995125777788740389998988989997478998999999


Q ss_pred             --CCCEEE--EEECCCCCCCEEECCCCCEEECCCCCEE-EEECCCCEEECCCCCCCEEEEECC-CCCE
Q ss_conf             --898599--9844887641141134534893899899-980467714302477756999908-9989
Q T0558           212 --ESNRIV--RRVNANDIEGVQLFFVAQLFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDS-EGKV  273 (294)
Q Consensus       212 --~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~i~-i~~~~~~~~~~~~~~~~~~~~i~~-~G~~  273 (294)
                        ++|++.  ..+...      -.++.++.+.++|+.+ +.+..+.        ...++.+|. +|.+
T Consensus       275 d~~~g~l~~v~~~~~~------G~~Pr~~~~spdG~~L~van~~s~--------~V~vf~~d~~~G~l  328 (345)
T PF10282_consen  275 DPATGKLTLVQTIPTG------GKFPRGFAFSPDGKYLYVANQDSN--------TVSVFDRDAETGKL  328 (345)
T ss_dssp             CCEETTEEEEEEEE-S------SS-B-EEEE-TTSSEEEEEETTTT--------EEEEEEE-S----E
T ss_pred             ECCCCCEEEEEEEECC------CCCCCEEEECCCCCEEEEEECCCC--------EEEEEEEECCCCCE
T ss_conf             6689838997779489------999887899689999999977999--------39999998999978


No 5  
>PF02239 Cytochrom_D1:  Cytochrome D1 heme domain;  InterPro: IPR003143 Cytochrome cd1 (nitrite reductase) catalyses the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 haem-binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 haem iron of the active site in the oxidized state .; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0050421 nitrite reductase (NO-forming) activity, 0006118 electron transport, 0046209 nitric oxide metabolic process, 0042597 periplasmic space; PDB: 1aof_B 1hj5_B 1hj3_A 1aom_B 1h9x_B 1dy7_B 1hcm_B 1e2r_B 1qks_B 1aoq_B ....
Probab=99.18  E-value=1.1e-08  Score=76.74  Aligned_cols=257  Identities=12%  Similarity=0.077  Sum_probs=147.4

Q ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEE---CCEEEEEECCCCCEEEEE-CC
Q ss_conf             01478885899974798699998878829999944998731164790798399841---882899752677036772-37
Q T0558            17 AQGSSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY---SKGAKMITRDGRELWNIA-AP   92 (294)
Q Consensus        17 ~~~s~~~~~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~---~~~v~~~~~~~~~~~~~~-~~   92 (294)
                      ...+++++++.+.+.|+.|.++|..+++++.+.+.+  .....++++|||++++.+   .+.+.++|...-+..+.. ..
T Consensus        42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~vv~~v~~G--~~~~gia~S~DGk~v~v~n~~~~~v~viD~~tle~v~~i~~~  119 (369)
T PF02239_consen   42 VKFSPDGRYLYVASRDGWVSVIDLWTGKVVATVKVG--SNPRGIAVSPDGKYVYVANYWPGTVVVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EE------EEEEE---SEEEEEETTSSSEEEEEE-----B----EE--TTT-EEE--TBTTEEEEE------EEEEEE--
T ss_pred             EEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECC--CCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEC
T ss_conf             765688868999779972999989855799999548--786326987899899999558992599806776403565302


Q ss_pred             ------CCCCEEEEEECCCCCEEEEEECCC-CEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEE-CCC
Q ss_conf             ------776314878737875899970589-799998568958899970677677667400899969989999974-698
Q T0558            93 ------AGCEMQTARILPDGNALVAWCGHP-STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATS  164 (294)
Q Consensus        93 ------~~~~v~~~~~~~dg~~l~~~s~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~-~d~  164 (294)
                            ....+.++..++....+++.-.+. .+.+.+..+.+.+.......+...     ....++|+|+|++++. ...
T Consensus       120 ~~~~~~~~sRv~aIv~s~~~~~fVv~lkd~~~I~iVdy~d~~~~~~~~i~~g~~l-----~Dg~~d~~gRy~lva~~~~n  194 (369)
T PF02239_consen  120 GYTGDGPESRVAAIVASPYRPEFVVNLKDTGEIWIVDYSDPKNLKVRTIKVGRFL-----HDGGFDPDGRYFLVAANGSN  194 (369)
T ss_dssp             ---TTTS---EEEEEE-SSSSEEEEEES----EEEEETTTSSCEEEEEE---TTB-----------TTSSEEEEEEGGGT
T ss_pred             CCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCEECCCCCCCC-----CCCCCCCCCEEEEEHHCCCC
T ss_conf             3446566873255671789977999980388799997046775420002454343-----35667863017770004578


Q ss_pred             EEEEEECC-CCEEEEEECCCEEEEE----EEECC----------CCEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEE
Q ss_conf             89999378-8588985169734898----87348----------968997358987999987898599984488764114
Q T0558           165 EVREIAPN-GQLLNSVKLSGTPFSS----AFLDN----------GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ  229 (294)
Q Consensus       165 ~i~~~d~~-g~~~~~~~~~~~~~~~----~~~~~----------g~~~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  229 (294)
                      .+.++|.+ ++.......+..+...    ..++.          +...++.-..+.+.+++..+-+++.++.....+ ..
T Consensus       195 ~i~vvd~~~~~~v~~i~~g~~~~~~~~~~~pH~~~g~vW~t~~~~~~~v~~ig~~~v~v~~~~~wkvV~~i~~~G~g-lF  273 (369)
T PF02239_consen  195 KIAVVDTKTGKLVALIDTGKKPHPGPGANMPHPGFGPVWATSHLGVFAVPLIGTDPVSVHDDYAWKVVKEIPTPGGG-LF  273 (369)
T ss_dssp             EEEEEETTTTEEEEEEE----BE-----EE--S----EEEEEB----EEEEE---TTT--TTTTTS--EEEE--------
T ss_pred             CEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCC-CE
T ss_conf             21256236623899851365666665210006774415665168730410147884456521287598999688987-62


Q ss_pred             ECCCCC--EEE------CCCCCEEEEECCCCEEECC--C--CCCCEEEEECCCCCEEEE-EECCC
Q ss_conf             113453--489------3899899980467714302--4--777569999089989999-83588
Q T0558           230 LFFVAQ--LFP------LQNGGLYICNWQGHDREAG--K--GKHPQLVEIDSEGKVVWQ-LNDKV  281 (294)
Q Consensus       230 ~~~~~~--~~~------~~~G~i~i~~~~~~~~~~~--~--~~~~~~~~i~~~G~~vW~-~~~~~  281 (294)
                      +...++  ...      ..+..+.+.+.....+...  .  +...--++++++|+.+|- .-+.+
T Consensus       274 vkthP~s~~lwvd~~~~~~~~~v~viD~~tl~~v~~i~~~~~~~~~h~ef~~dG~~vwvS~w~~~  338 (369)
T PF02239_consen  274 VKTHPDSPYLWVDTFLNPDNDSVQVIDKQTLEVVKTIAPGPGKRVVHPEFNKDGDEVWVSVWDGN  338 (369)
T ss_dssp             EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-----EEEEEEE---
T ss_pred             EECCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCEECCEECCCCCEEEEEEECCC
T ss_conf             68689984089805779988779999887772778871068985655369999999999985799


No 6  
>PF07433 DUF1513:  Protein of unknown function (DUF1513);  InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.17  E-value=2.2e-07  Score=67.31  Aligned_cols=220  Identities=15%  Similarity=0.175  Sum_probs=146.0

Q ss_pred             CCCCCEEEEE-CCCCEEEEEECCCCEEEEEEECCCCCCCC-EEEEECCCCEEEEE-------CCEEEEEECCCCC-EEEE
Q ss_conf             7888589997-47986999988788299999449987311-64790798399841-------8828997526770-3677
Q T0558            20 SSPQHLLVGG-SGWNKIAIINKDTKEIVWEYPLEKGWECN-SVAATKAGEILFSY-------SKGAKMITRDGRE-LWNI   89 (294)
Q Consensus        20 s~~~~~l~~g-s~~~~i~~~d~~tg~~~w~~~~~~~~~~~-~~~~~pdG~~l~s~-------~~~v~~~~~~~~~-~~~~   89 (294)
                      +.+. .++.+ --.....++|..+|+.+.......+...+ +.+|+|||++|++.       .+-+-+|+...+. ....
T Consensus        15 ~~~~-avafARRPG~~~~v~D~~~g~~~~~l~a~~~RHFyGHg~fs~DG~~LytTEnd~~~g~G~IGV~d~~~~~~ri~E   93 (305)
T PF07433_consen   15 TRPE-AVAFARRPGTFAVVFDCRTGQVLQRLAAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAADGYRRIGE   93 (305)
T ss_pred             CCCE-EEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEECCEEECCCCCEEEECCCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf             9973-999997997689999858895668863898856515676849989898605566789569999987679289877


Q ss_pred             ECCCCCCEEEEEECCCCCEEEEEEC------------------CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEC
Q ss_conf             2377763148787378758999705------------------8979999856895889997067767766740089996
Q T0558            90 AAPAGCEMQTARILPDGNALVAWCG------------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN  151 (294)
Q Consensus        90 ~~~~~~~v~~~~~~~dg~~l~~~s~------------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s  151 (294)
                      ...+....+.+.+.|||..|+++.+                  ..++.+.+..+|+++.+..+..  ..+...++++++.
T Consensus        94 f~s~GIGPHel~~~pdg~tLvVANGGI~Thpd~GR~kLNLdtM~psL~~ld~~~G~ll~q~~L~~--~~~~lSiRHLav~  171 (305)
T PF07433_consen   94 FPSGGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQWELPP--DLHQLSIRHLAVD  171 (305)
T ss_pred             ECCCCCCHHHEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCEEEEECCCH--HHHHCCEEEEEEC
T ss_conf             53899583538986999989997589816887686145832348615898427875221320683--4622115678774


Q ss_pred             CCCCEEEEEECCCE-------EEEEECCCCEEEEEE--------CCCEEEEEEEECCCCEE-EECCCCCEEEEEECCCCE
Q ss_conf             99899999746988-------999937885889851--------69734898873489689-973589879999878985
Q T0558           152 KKGNYLVPLFATSE-------VREIAPNGQLLNSVK--------LSGTPFSSAFLDNGDCL-VACGDAHCFVQLNLESNR  215 (294)
Q Consensus       152 ~dG~~i~~g~~d~~-------i~~~d~~g~~~~~~~--------~~~~~~~~~~~~~g~~~-v~~~~~~~i~~~d~~~g~  215 (294)
                      +||..+......+.       +.+++.. ..+....        ..+.+-|+++..+|..+ +++=.++++.+||..+|+
T Consensus       172 ~~G~v~~a~Q~qG~~~~~~PLla~~~~g-~~~~~~~~p~~~~~~l~~Y~GSVA~~~~g~~iavtsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  172 GDGTVWFAMQYQGDPGDAPPLLALHRRG-EALQLLPAPEEQWRRLNGYIGSVAASRDGRLIAVTSPRGGRVQVWDAATGR  250 (305)
T ss_pred             CCCCEEEEEEECCCCCCCCCEEEEECCC-CCCEECCCCHHHHHHHCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf             9983899886138866678758996189-863123798679887479279999869999999988989889999999888


Q ss_pred             EEEEECCCCCCCEEECCCCCEEECCCCCEEEEECCCC
Q ss_conf             9998448876411411345348938998999804677
Q T0558           216 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH  252 (294)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~i~~~~~~  252 (294)
                      ++......+        ++++...++| +++.+..+.
T Consensus       251 ~~~~~~l~D--------~cGva~~~~g-f~~ssG~G~  278 (305)
T PF07433_consen  251 LLGSVPLPD--------ACGVAALAGG-FLASSGQGR  278 (305)
T ss_pred             EEECCCCCC--------EEEEEECCCC-EEEECCCCC
T ss_conf             762427252--------5788676997-699679985


No 7  
>PF08450 SGL:  SMP-30/Gluconolaconase/LRE-like region;  InterPro: IPR013658   This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2ghs_A 3e5z_A 3dr2_A 2dg0_J 2dg1_C 2dso_F 2iax_A 2ias_A 2iaw_A 3byc_A ....
Probab=99.02  E-value=3e-07  Score=66.34  Aligned_cols=189  Identities=16%  Similarity=0.111  Sum_probs=128.3

Q ss_pred             CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEE-CCCCEEEEECCEEEEEECCCCCEEEEECC-----CCC
Q ss_conf             885899974798699998878829999944998731164790-79839984188289975267703677237-----776
Q T0558            22 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-KAGEILFSYSKGAKMITRDGRELWNIAAP-----AGC   95 (294)
Q Consensus        22 ~~~~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~-pdG~~l~s~~~~v~~~~~~~~~~~~~~~~-----~~~   95 (294)
                      .+.++.+....++|+.++.++++.. .+....   ...+++. +||+++++....+.+++...+.+......     ...
T Consensus        11 ~g~ly~~Di~~~~i~~~~~~~~~~~-~~~~~~---~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~l~~~~~~~~~~~   86 (246)
T PF08450_consen   11 DGNLYWVDIPNGRIYRVDPDGGKAT-VFDLPG---PNGAAFDTPDGRLYVADSDGIAILDPDTGEVETLADIPDGGAPFN   86 (246)
T ss_dssp             GTEEEEEECCCTEEEEEESTT-EEE-EEESSS---BSEEEEECCTCEEEEEE----EEEECE---EEEEECCSTTSSB-S
T ss_pred             CCEEEEEECCCCEEEEEECCCCEEE-EEECCC---CCEEEEECCCCEEEEEECCCEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf             9989999998698999989999189-995899---858988867998999965855999579993899764257877756


Q ss_pred             CEEEEEECCCCCEEEEEECCC--------CEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEE-EEECCCEE
Q ss_conf             314878737875899970589--------799998568958899970677677667400899969989999-97469889
Q T0558            96 EMQTARILPDGNALVAWCGHP--------STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV-PLFATSEV  166 (294)
Q Consensus        96 ~v~~~~~~~dg~~l~~~s~~~--------~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~-~g~~d~~i  166 (294)
                      .+..+.+.|+|+..++.....        .++.++.. |+.......       ....+.++++|||+.|+ +-+..+.|
T Consensus        87 ~~ND~~vd~~G~l~~t~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~~-------~~~pNGi~~s~dg~~lyv~ds~~~~I  158 (246)
T PF08450_consen   87 RPNDGAVDPDGNLYFTDMGDSGVGPSDPGALYRIDPD-GKVTVVIDG-------LSIPNGIAFSPDGKTLYVSDSFTGRI  158 (246)
T ss_dssp             BEEEEEE-----EEEEEB---TTTTT--EEEEEE-TT---EEEEEEC-------ESSBE--EEETTSSEEEEEETTTTEE
T ss_pred             CCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEECCC-CEEEEEECC-------CCCCCCCEECCCCCEEEEEECCCCEE
T ss_conf             7763899899999994899774543355279999899-879998536-------41125548978898999996577759


Q ss_pred             EEEECC--CCEEE---EE---ECC-CEEEEEEEECCCCEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             999378--85889---85---169-73489887348968997358987999987898599984488
Q T0558           167 REIAPN--GQLLN---SV---KLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN  223 (294)
Q Consensus       167 ~~~d~~--g~~~~---~~---~~~-~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~~g~~~~~~~~~  223 (294)
                      +.++.+  +..+-   .+   ... ..|-...+..+|+++++...+++|.+++.. |+++..+...
T Consensus       159 ~~~d~~~~~~~~~~~~~~~~~~~~~~~pDG~~vD~~G~l~va~~~~~~V~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  159 YRYDLDADGGELSNKRVFADFPGGDGYPDGLAVDADGNLWVADWGGGRVQRFDPD-GKLLGEIELP  223 (246)
T ss_dssp             EEEEE-TT---EEEEEEEEE----------EEE-TT--EEEEE----EEEEE------BCEEEE-S
T ss_pred             EEEEECCCCCEECCCEEEEECCCCCCCCCCCEECCCCCEEEEEECCCEEEEECCC-CCEEEEEECC
T ss_conf             9998327984702743899878997478860298999899999559999998999-9699999999


No 8  
>PF08450 SGL:  SMP-30/Gluconolaconase/LRE-like region;  InterPro: IPR013658   This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2ghs_A 3e5z_A 3dr2_A 2dg0_J 2dg1_C 2dso_F 2iax_A 2ias_A 2iaw_A 3byc_A ....
Probab=98.97  E-value=1.1e-06  Score=62.24  Aligned_cols=200  Identities=16%  Similarity=0.228  Sum_probs=129.3

Q ss_pred             EEEEEC-CCCEEEEE--CCEEEEEECCCCCEEEEECCCCCCEEEEEEC-CCCCEEEEEECCCCEEEEECCCCCEEEEEEC
Q ss_conf             647907-98399841--8828997526770367723777631487873-7875899970589799998568958899970
Q T0558            59 SVAATK-AGEILFSY--SKGAKMITRDGRELWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNMKGEVLSKTEF  134 (294)
Q Consensus        59 ~~~~~p-dG~~l~s~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-~dg~~l~~~s~~~~~~~~~~~~G~~~~~~~~  134 (294)
                      .+.+.| +|.+++++  .+.++.++..++.......+.   ..++.+. ++|.++++ ... .+.+++..+|+.......
T Consensus         4 gp~~d~~~g~ly~~Di~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~l~~~   78 (246)
T PF08450_consen    4 GPVWDPEDGNLYWVDIPNGRIYRVDPDGGKATVFDLPG---PNGAAFDTPDGRLYVA-DSD-GIAILDPDTGEVETLADI   78 (246)
T ss_dssp             -EEEEGGGTEEEEEECCCTEEEEEESTT-EEEEEESSS---BSEEEEECCTCEEEEE-E-----EEEECE---EEEEECC
T ss_pred             CCEEECCCCEEEEEECCCCEEEEEECCCCEEEEEECCC---CCEEEEECCCCEEEEE-ECC-CEEEEECCCCCEEEEEEC
T ss_conf             31898999989999998698999989999189995899---8589888679989999-658-559995799938997642


Q ss_pred             CCCCCCCCCCCCEEEECCCCCEEEEEECC--------CEEEEEECCCCEEEEEECCCEEEEEEEECCCCE-EEECCCCCE
Q ss_conf             67767766740089996998999997469--------889999378858898516973489887348968-997358987
Q T0558           135 ETGIERPHAQFRQINKNKKGNYLVPLFAT--------SEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDC-LVACGDAHC  205 (294)
Q Consensus       135 ~~~~~~~~~~~~~~~~s~dG~~i~~g~~d--------~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~  205 (294)
                      .. ........+.+.+.|+|++.++....        +.++.++.+++.......-..++.+.++++|+. +++.+..++
T Consensus        79 ~~-~~~~~~~~ND~~vd~~G~l~~t~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   79 PD-GGAPFNRPNDGAVDPDGNLYFTDMGDSGVGPSDPGALYRIDPDGKVTVVIDGLSIPNGIAFSPDGKTLYVSDSFTGR  157 (246)
T ss_dssp             ST-TSSB-SBEEEEEE-----EEEEEB---TTTTT--EEEEEE-TT--EEEEEECESSBE--EEETTSSEEEEEETTTTE
T ss_pred             CC-CCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCEECCCCCEEEEEECCCCE
T ss_conf             57-87775677638998999999948997745433552799998998799985364112554897889899999657775


Q ss_pred             EEEEECC--CCEEEEE---ECCCCCCCEEECCCCCEEECCCCCEEEEECCCCEEECCCCCCCEEEEECCCCCEEEEEE
Q ss_conf             9999878--9859998---44887641141134534893899899980467714302477756999908998999983
Q T0558           206 FVQLNLE--SNRIVRR---VNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  278 (294)
Q Consensus       206 i~~~d~~--~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~i~i~~~~~~~~~~~~~~~~~~~~i~~~G~~vW~~~  278 (294)
                      |+.++..  ++++...   .......    ..+-++...++|+++++.+.          ..++..++++|+++=.+.
T Consensus       158 I~~~d~~~~~~~~~~~~~~~~~~~~~----~~pDG~~vD~~G~l~va~~~----------~~~V~~~~p~G~~~~~i~  221 (246)
T PF08450_consen  158 IYRYDLDADGGELSNKRVFADFPGGD----GYPDGLAVDADGNLWVADWG----------GGRVQRFDPDGKLLGEIE  221 (246)
T ss_dssp             EEEEEE-TT---EEEEEEEEE--------------EEE-TT--EEEEE--------------EEEEE-----BCEEEE
T ss_pred             EEEEEECCCCCEECCCEEEEECCCCC----CCCCCCEECCCCCEEEEEEC----------CCEEEEECCCCCEEEEEE
T ss_conf             99998327984702743899878997----47886029899989999955----------999999899996999999


No 9  
>PF08662 eIF2A:  Eukaryotic translation initiation factor eIF2A;  InterPro: IPR013979    This entry contains eukaryotic translation initiation factors. 
Probab=98.93  E-value=4.1e-07  Score=65.32  Aligned_cols=136  Identities=10%  Similarity=0.049  Sum_probs=84.8

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf             882899752677036772377763148787378758999705--897999985689588999706776776674008999
Q T0558            73 SKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCG--HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK  150 (294)
Q Consensus        73 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~dg~~l~~~s~--~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                      ...++.++..+.............+.+++|+|+|+.+++..+  ...+.+++. +++.+..+..        ...+.+.+
T Consensus        38 ~~~l~~~~~~~~~~~~v~l~~~g~V~~~~WsP~~~~Favi~g~~p~~i~lyd~-~~~~v~~~~~--------~~~N~i~w  108 (194)
T PF08662_consen   38 ELELFRLNEKGIPVEVVELKKEGPVHDFAWSPNGDEFAVISGNMPAKITLYDV-KGKKVFSFGS--------GPRNTIFW  108 (194)
T ss_pred             CEEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEC-CCCEEEECCC--------CCCCEEEE
T ss_conf             36999996799853256605797334789887998899999168752999959-8728886588--------87227999


Q ss_pred             CCCCCEEEEEEC---CCEEEEEECCCCEEEEEECCCEEEEEEEECCCCEEEECCC------CCEEEEEECCCCEEEE
Q ss_conf             699899999746---9889999378858898516973489887348968997358------9879999878985999
Q T0558           151 NKKGNYLVPLFA---TSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVR  218 (294)
Q Consensus       151 s~dG~~i~~g~~---d~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~g~~~v~~~~------~~~i~~~d~~~g~~~~  218 (294)
                      +|+|++++.++.   .|.+.+||.+....-....+.....+..+|+|+++++.+.      ++.+.+|+. .|+++.
T Consensus       109 sP~G~~lv~ag~gn~~G~l~fwd~~~~~~i~~~~~~~~~~~~WsP~Gr~~~ta~t~~r~~~dng~~i~~~-~G~~l~  184 (194)
T PF08662_consen  109 SPNGRFLVLAGFGNLSGDLEFWDVRKMKKIATFEHPCSTDVEWSPDGRYFATATTSPRLRVDNGFKIWSF-QGRLLY  184 (194)
T ss_pred             CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCEECCCEEEEEEE-CCEEEE
T ss_conf             8999999996726786089999767627874035775027899999899999983353324762999997-792967


No 10 
>PF08662 eIF2A:  Eukaryotic translation initiation factor eIF2A;  InterPro: IPR013979    This entry contains eukaryotic translation initiation factors. 
Probab=98.89  E-value=2.5e-07  Score=66.84  Aligned_cols=137  Identities=15%  Similarity=0.089  Sum_probs=73.2

Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEE--E--CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC
Q ss_conf             9869999887882999994499873116479079839984--1--88289975267703677237776314878737875
Q T0558            32 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--Y--SKGAKMITRDGRELWNIAAPAGCEMQTARILPDGN  107 (294)
Q Consensus        32 ~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s--~--~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~dg~  107 (294)
                      +..|+.++..... +-..++.....+++++++|+|+.++.  +  ...+.+|+..+..+..+..   .....+.|+|+|+
T Consensus        38 ~~~l~~~~~~~~~-~~~v~l~~~g~V~~~~WsP~~~~Favi~g~~p~~i~lyd~~~~~v~~~~~---~~~N~i~wsP~G~  113 (194)
T PF08662_consen   38 ELELFRLNEKGIP-VEVVELKKEGPVHDFAWSPNGDEFAVISGNMPAKITLYDVKGKKVFSFGS---GPRNTIFWSPNGR  113 (194)
T ss_pred             CEEEEEEECCCCC-CEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEECCC---CCCCEEEECCCCC
T ss_conf             3699999679985-32566057973347898879988999991687529999598728886588---8722799989999


Q ss_pred             EEEEEECC---CCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEEC------CCEEEEEECCCCEEEE
Q ss_conf             89997058---97999985689588999706776776674008999699899999746------9889999378858898
Q T0558           108 ALVAWCGH---PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA------TSEVREIAPNGQLLNS  178 (294)
Q Consensus       108 ~l~~~s~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~------d~~i~~~d~~g~~~~~  178 (294)
                      ++++++..   +.+.+|+..+.+.+.+..        +.....+.++|||+++++...      |+.+++|+.+|+++..
T Consensus       114 ~lv~ag~gn~~G~l~fwd~~~~~~i~~~~--------~~~~~~~~WsP~Gr~~~ta~t~~r~~~dng~~i~~~~G~~l~~  185 (194)
T PF08662_consen  114 FLVLAGFGNLSGDLEFWDVRKMKKIATFE--------HPCSTDVEWSPDGRYFATATTSPRLRVDNGFKIWSFQGRLLYE  185 (194)
T ss_pred             EEEEEECCCCCEEEEEEECCCCEEEEECC--------CCCEEEEEECCCCCEEEEEEECCCEECCCEEEEEEECCEEEEE
T ss_conf             99996726786089999767627874035--------7750278999998999999833533247629999977929673


Q ss_pred             EE
Q ss_conf             51
Q T0558           179 VK  180 (294)
Q Consensus       179 ~~  180 (294)
                      ..
T Consensus       186 ~~  187 (194)
T PF08662_consen  186 EK  187 (194)
T ss_pred             CC
T ss_conf             22


No 11 
>PF05935 Arylsulfotrans:  Arylsulfotransferase (ASST);  InterPro: IPR010262   This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate .; PDB: 3ett_B 3elq_B 3ets_A.
Probab=98.53  E-value=2.2e-06  Score=60.04  Aligned_cols=211  Identities=14%  Similarity=0.222  Sum_probs=131.6

Q ss_pred             ECCCCEEEEE-----CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC
Q ss_conf             0798399841-----88289975267703677237776314878737875899970589799998568958899970677
Q T0558            63 TKAGEILFSY-----SKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG  137 (294)
Q Consensus        63 ~pdG~~l~s~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~dg~~l~~~s~~~~~~~~~~~~G~~~~~~~~~~~  137 (294)
                      ..+|-+++..     ....+++|.+|...|.......... .+...+||.++....   ..+...+..|+++|++.+..+
T Consensus       112 ~~~gLy~~~~~~~~~~~~~~i~D~~G~vrW~~~~~~~~~~-~~~~~~nG~l~~~~~---~~~~e~D~~G~vi~~~~l~~~  187 (471)
T PF05935_consen  112 MEDGLYFVNPNDWDYQPGPYIYDNNGNVRWYLPSDSGRDN-RFKRLDNGHLLFGSG---GRYYEYDWLGKVIWQYDLPNG  187 (471)
T ss_dssp             -TT-EEEEEETT---EEEEEEEE----EEEEE-GGGT-----EEE-----EEEE------EEEEE-----EEEEEE----
T ss_pred             CCCCEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCC-EEEECCCCCEEEEEC---CEEEEECCCCCEEEEEECCCC
T ss_conf             5786899967777777606999599869999527778761-478738986999978---848998889978999987887


Q ss_pred             C-CCCCCCCCEEEECCCCCEEEEEEC-------------CCEEEEEECCCCEEEEEECC-------C-------------
Q ss_conf             6-776674008999699899999746-------------98899993788588985169-------7-------------
Q T0558           138 I-ERPHAQFRQINKNKKGNYLVPLFA-------------TSEVREIAPNGQLLNSVKLS-------G-------------  183 (294)
Q Consensus       138 ~-~~~~~~~~~~~~s~dG~~i~~g~~-------------d~~i~~~d~~g~~~~~~~~~-------~-------------  183 (294)
                      . ..|+    .+...|+|++|+.+..             .-.|...|.+|+.+|.+...       .             
T Consensus       188 ~~~~HH----d~~~~~nGn~Li~~~~~~~~~~~~~~~~~~D~iiEid~tG~vv~~W~~~dhld~~~~~~~~~~~~~~~~~  263 (471)
T PF05935_consen  188 YYDFHH----DFQELPNGNILILAYERRYADEGKDGWTVEDVIIEIDETGEVVWEWDASDHLDPYRDTNLKDLNDPFGDN  263 (471)
T ss_dssp             -----S-----EEE-----EEEEE--TTEE----EE---S-EEEEE-----EEEEEEGGGTS-TT--S---B-T------
T ss_pred             CCCCCE----EEEECCCCCEEEEEEECCCCCCCCCCCEEECEEEEECCCCCEEEEECHHHCCCCCCCCHHHCCCCCCCCC
T ss_conf             776430----1189699979999973111246778868826899998999699998766768800065000255566756


Q ss_pred             ----------EEEEEEEEC-CCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEE---------------ECCCC--C
Q ss_conf             ----------348988734-8968997358987999987898599984488764114---------------11345--3
Q T0558           184 ----------TPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ---------------LFFVA--Q  235 (294)
Q Consensus       184 ----------~~~~~~~~~-~g~~~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~---------------~~~~~--~  235 (294)
                                -..++...+ +|.++++.-.-+.|..+|.++|+++|.+.++......               ..+-.  .
T Consensus       264 ~~~~~~~Dw~HiNsv~yd~~d~~iliS~R~~s~V~~Id~~tg~I~W~lG~~~~~~~~~~~~~l~p~~~~~~~~~~~~QH~  343 (471)
T PF05935_consen  264 PGSGGGWDWFHINSVDYDPDDDSILISSRHQSTVIKIDYRTGEIKWILGGKGGWSKDYQDYLLTPVDGDGDFDWFWGQHD  343 (471)
T ss_dssp             --------S--EEEEEEETTTTEEEEEETT----EEE----S---EE-S------TTTGGGB--BB-SSSS----SS-EE
T ss_pred             CCCCCCCCCCCCCCCEECCCCCCEEEECCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCEEECCCC
T ss_conf             68899888737356077789993999767755899995699868999479877673101200343566877650003542


Q ss_pred             EEECCCC---CEEEEECCC---CEEEC---CC--CCCCEEEEECCC-CC--EEEEEECCC
Q ss_conf             4893899---899980467---71430---24--777569999089-98--999983588
Q T0558           236 LFPLQNG---GLYICNWQG---HDREA---GK--GKHPQLVEIDSE-GK--VVWQLNDKV  281 (294)
Q Consensus       236 ~~~~~~G---~i~i~~~~~---~~~~~---~~--~~~~~~~~i~~~-G~--~vW~~~~~~  281 (294)
                      ..+.++|   ++++.+=..   .....   ..  .+..-.+.+|.+ +.  .+|++....
T Consensus       344 a~~~~~~~~~~i~~FDNg~~~~~~~~~~~~~~~~~Sr~~~y~ID~~~~Tv~~v~~y~~~~  403 (471)
T PF05935_consen  344 ARFIPDGPQGNILVFDNGNGRGYSQPNLVWMKDNYSRGVEYKIDENNMTVEQVWEYGKPR  403 (471)
T ss_dssp             EEE--------EEEEE-----TTS--SSCCG-----EEEEEEE-S----EEEEEEE----
T ss_pred             CEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf             078189972799999589866667766556777534369999858998699999975898


No 12 
>PF07433 DUF1513:  Protein of unknown function (DUF1513);  InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.37  E-value=9.5e-05  Score=48.07  Aligned_cols=192  Identities=19%  Similarity=0.216  Sum_probs=113.1

Q ss_pred             CCCCCCCCEEEEE-----CCCCEEEEEECC-CCEEEEEEECCCCCCCCEEEEECCCCEEEEEC-----------------
Q ss_conf             0147888589997-----479869999887-88299999449987311647907983998418-----------------
Q T0558            17 AQGSSPQHLLVGG-----SGWNKIAIINKD-TKEIVWEYPLEKGWECNSVAATKAGEILFSYS-----------------   73 (294)
Q Consensus        17 ~~~s~~~~~l~~g-----s~~~~i~~~d~~-tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~~-----------------   73 (294)
                      ..+|++.++|++-     ++.+.|-+||.. +-+.+-||+ .++..++.+.+.|||..|+...                 
T Consensus        56 g~fs~DG~~LytTEnd~~~g~G~IGV~d~~~~~~ri~Ef~-s~GIGPHel~~~pdg~tLvVANGGI~Thpd~GR~kLNLd  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAADGYRRIGEFP-SGGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEECCCCCEEEECCCCCCCCCEEEEEEECCCCCEEEEEEC-CCCCCHHHEEECCCCCEEEEECCCCCCCCCCCCCCCCHH
T ss_conf             7684998989860556678956999998767928987753-899583538986999989997589816887686145832


Q ss_pred             ---CEEEEEE-CCCCCEEEEEC---CCCCCEEEEEECCCCCEEEEEECCCC------EEEEECCCCCEEEEEECCCCCC-
Q ss_conf             ---8289975-26770367723---77763148787378758999705897------9999856895889997067767-
Q T0558            74 ---KGAKMIT-RDGRELWNIAA---PAGCEMQTARILPDGNALVAWCGHPS------TILEVNMKGEVLSKTEFETGIE-  139 (294)
Q Consensus        74 ---~~v~~~~-~~~~~~~~~~~---~~~~~v~~~~~~~dg~~l~~~s~~~~------~~~~~~~~G~~~~~~~~~~~~~-  139 (294)
                         ..+...| .+|..+-+...   -+...+--+++.++|..++.. +..+      -.+.....|+.+..+....... 
T Consensus       135 tM~psL~~ld~~~G~ll~q~~L~~~~~~lSiRHLav~~~G~v~~a~-Q~qG~~~~~~PLla~~~~g~~~~~~~~p~~~~~  213 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQWELPPDLHQLSIRHLAVDGDGTVWFAM-QYQGDPGDAPPLLALHRRGEALQLLPAPEEQWR  213 (305)
T ss_pred             HCCCCEEEEECCCCCEEEEECCCHHHHHCCEEEEEECCCCCEEEEE-EECCCCCCCCCEEEEECCCCCCEECCCCHHHHH
T ss_conf             3486158984278752213206834622115678774998389988-613886667875899618986312379867988


Q ss_pred             CCCCCCCEEEECCCCCEEEEEE-CCCEEEEEECC-CCEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEECCC
Q ss_conf             7667400899969989999974-69889999378-85889851697348988734896899735898799998789
Q T0558           140 RPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLES  213 (294)
Q Consensus       140 ~~~~~~~~~~~s~dG~~i~~g~-~d~~i~~~d~~-g~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~~  213 (294)
                      ....-+-++++++||.++++.+ ..+.+.+||.. +..+...... ....++..+++ .+++.+.+ .+.......
T Consensus       214 ~l~~Y~GSVA~~~~g~~iavtsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~g-f~~ssG~G-~~~~~~~~~  286 (305)
T PF07433_consen  214 RLNGYIGSVAASRDGRLIAVTSPRGGRVQVWDAATGRLLGSVPLP-DACGVAALAGG-FLASSGQG-RLIRLSPPD  286 (305)
T ss_pred             HHCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCC-CEEEEEECCCC-EEEECCCC-CEEECCCCC
T ss_conf             747927999986999999998898988999999988876242725-25788676997-69967998-568647654


No 13 
>PF08553 VID27:  VID27 cytoplasmic protein;  InterPro: IPR013863    This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) , .
Probab=98.34  E-value=2.3e-05  Score=52.63  Aligned_cols=140  Identities=8%  Similarity=0.052  Sum_probs=85.2

Q ss_pred             CEEEEE---CCEEEEEECCCCCEEE-EECCCCCCEEEEEECC-----CCCEEEEEECCCCEEEEECCCC--CEEEEEECC
Q ss_conf             399841---8828997526770367-7237776314878737-----8758999705897999985689--588999706
Q T0558            67 EILFSY---SKGAKMITRDGRELWN-IAAPAGCEMQTARILP-----DGNALVAWCGHPSTILEVNMKG--EVLSKTEFE  135 (294)
Q Consensus        67 ~~l~s~---~~~v~~~~~~~~~~~~-~~~~~~~~v~~~~~~~-----dg~~l~~~s~~~~~~~~~~~~G--~~~~~~~~~  135 (294)
                      ++|...   ...++..|...+.+.. +.......+..+....     ...-.+.+-.++.++.||.+--  ++++.. ..
T Consensus       488 ~Mll~~~~~~~~ly~mDLe~GKIV~eW~~~~d~~v~~~~~~sK~aqlt~e~tflGls~n~lfriDpRl~~~klv~~~-~k  566 (788)
T PF08553_consen  488 NMLLLSPENPNKLYQMDLERGKIVEEWKVEDDIPVVDIAPDSKFAQLTSEQTFLGLSDNSLFRIDPRLSGNKLVQSQ-SK  566 (788)
T ss_pred             CEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCEEECC-CC
T ss_conf             26974698878338875478868888525887660374256553436777518998778349874566887145113-42


Q ss_pred             CCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE--CCCEEEEEEEECCCCEEEECCCCCEEEEEEC
Q ss_conf             776776674008999699899999746988999937885889851--6973489887348968997358987999987
Q T0558           136 TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVK--LSGTPFSSAFLDNGDCLVACGDAHCFVQLNL  211 (294)
Q Consensus       136 ~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d~~g~~~~~~~--~~~~~~~~~~~~~g~~~v~~~~~~~i~~~d~  211 (294)
                      ..  .......+++-+.+| +||+|+.+|.|++||.-|+...+..  .+.++..+.++.||+++++++.. ++.+++.
T Consensus       567 ~Y--~~~~~Fs~~aTT~~G-~iavgS~~G~IRLyd~~gk~AKT~lp~lG~PIi~iDVT~DGkWiLaTc~t-yLlLi~t  640 (788)
T PF08553_consen  567 QY--ASKNNFSCAATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCDT-YLLLIDT  640 (788)
T ss_pred             CC--CCCCCCEEEEECCCC-EEEEECCCCCEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCEEEEEECC-EEEEEEE
T ss_conf             24--468870489856996-59996089857860666713322278789973677965788489997053-5999985


No 14 
>PF06433 Me-amine-dh_H:  Methylamine dehydrogenase heavy chain (MADH);  InterPro: IPR009451   Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria . It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO).  RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor    MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure .; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0042597 periplasmic space; PDB: 3c75_H 1mg2_A 2j57_J 2mta_H 2gc4_I 2gc7_I 2j55_J 1mg3_I 2bbk_H 2j56_J ....
Probab=98.31  E-value=0.00013  Score=47.16  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=54.0

Q ss_pred             CCEEEEEECCCCEEEEEEECCCCC------CCCEEEEECCCCEEEEE----CCEEEEEECCCCCEEEEECCCCCCEEEEE
Q ss_conf             986999988788299999449987------31164790798399841----88289975267703677237776314878
Q T0558            32 WNKIAIINKDTKEIVWEYPLEKGW------ECNSVAATKAGEILFSY----SKGAKMITRDGRELWNIAAPAGCEMQTAR  101 (294)
Q Consensus        32 ~~~i~~~d~~tg~~~w~~~~~~~~------~~~~~~~~pdG~~l~s~----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~  101 (294)
                      ..-|.+||.+|-...+|..+....      .....++++||++++..    ...|-+.|...+.......  ...++.+-
T Consensus        66 tDvV~v~D~~tL~p~~EI~iP~k~R~~~~~~~~~~~ls~d~k~l~v~N~TPa~SVtVVDl~~~k~v~eid--~PGC~~iy  143 (342)
T PF06433_consen   66 TDVVTVYDTQTLSPTAEIVIPPKPRFQAGPYKGMFALSADGKFLLVFNFTPAQSVTVVDLAAKKFVREID--TPGCALIY  143 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTT-B------GGGEEE-TTSSEEEE-BESSSEEE-EEES---EEEEEEE--G-SEEEEE
T ss_pred             EEEEEEEECCCCCCCCCEECCCCCCEEECCCCCCEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEC--CCCEEEEE
T ss_conf             2689997066676223376698763351234652365559839999836887656899854462144505--79879996


Q ss_pred             ECCCCCEEEEEECCCCEEEE-ECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             73787589997058979999-8568958899970677677667400899969989999974698899993788
Q T0558           102 ILPDGNALVAWCGHPSTILE-VNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG  173 (294)
Q Consensus       102 ~~~dg~~l~~~s~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d~~g  173 (294)
                      +.++.. +..-|+|+..... .+..|+...... ..........+..-+++.....++.-+..|.|+..+..+
T Consensus       144 P~~~~~-F~~lC~DGsl~~v~lD~~G~~~~~~t-~~F~~~~dplf~~~a~~~~~~~~~F~sy~G~v~~~~l~~  214 (342)
T PF06433_consen  144 PTGNRG-FSMLCGDGSLLSVTLDDDGKETQRRT-EVFFPDDDPLFEHPAYSRKTGRLVFPSYEGNVYQADLSG  214 (342)
T ss_dssp             EEETTE-EEEEE----EEEEE-------EEEE----SSTTTS-B-S--EE-STEEEEEEEB----EEEEE---
T ss_pred             ECCCCC-EEEEECCCCEEEEEECCCCCEEEECC-CCCCCCCCCCCCCCCEECCCCEEEEEECCCEEEEEECCC
T ss_conf             669985-17885698238999789997876215-776667742123553277898599984377799873168


No 15 
>PF04762 IKI3:  IKI3 family;  InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation .
Probab=98.19  E-value=0.00023  Score=45.30  Aligned_cols=155  Identities=15%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             CCCCEEEEECCCCEE--EEECCEEEEE----ECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf             731164790798399--8418828997----5267703677237776314878737875899970589799998568958
Q T0558            55 WECNSVAATKAGEIL--FSYSKGAKMI----TRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEV  128 (294)
Q Consensus        55 ~~~~~~~~~pdG~~l--~s~~~~v~~~----~~~~~~~~~~~~~~~~~v~~~~~~~dg~~l~~~s~~~~~~~~~~~~G~~  128 (294)
                      ..+.++.+-+|...+  +..++.+.++    +.....+.-. ..-...+.+++|+||...++...+..++++- +++-+.
T Consensus        76 ~~ivs~~~l~d~~~~c~~~~~Gdil~~~~~~~~~~~~~Eiv-g~~~~gi~a~~Wspd~e~l~~~t~~~~~l~M-t~~fe~  153 (928)
T PF04762_consen   76 DRIVSLEHLADSNQLCLVLAGGDILLVREDPDPDTDEIEIV-GSVDSGITAAAWSPDEELLALVTGENTLLLM-TRDFEP  153 (928)
T ss_pred             CEEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCEEEE-EEECCCEEEEEECCCCCEEEEEECCCEEEEE-ECCCEE
T ss_conf             70899882147772799987960999972699887625997-7884756898877985479999679769999-245408


Q ss_pred             EEEEE------------------------CCCCCC----------------CCCCCCCEEEECCCCCEEEEEEC----C-
Q ss_conf             89997------------------------067767----------------76674008999699899999746----9-
Q T0558           129 LSKTE------------------------FETGIE----------------RPHAQFRQINKNKKGNYLVPLFA----T-  163 (294)
Q Consensus       129 ~~~~~------------------------~~~~~~----------------~~~~~~~~~~~s~dG~~i~~g~~----d-  163 (294)
                      +.+..                        ...+..                ...+.-..+.+-.||.|+|+.+.    + 
T Consensus       154 i~E~~l~~dd~~~~~~VsVGWGkkETQF~G~~gK~a~lr~pt~~~~~~~~ls~Dd~~~~ISWRGDG~yfAVs~~~~~~~~  233 (928)
T PF04762_consen  154 IAEQPLDSDDFGESKHVSVGWGKKETQFHGSGGKAAALRDPTVPKVDEGKLSWDDGRVSISWRGDGAYFAVSSVEPESGQ  233 (928)
T ss_pred             EEEEECCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCC
T ss_conf             77752370104767603447886000615754432212488876556576545789637998688878999988716887


Q ss_pred             -CEEEEEECCCCEEEEEE-CCCEEEEEEEECCCCEEEECC---CCCEEEEEEC
Q ss_conf             -88999937885889851-697348988734896899735---8987999987
Q T0558           164 -SEVREIAPNGQLLNSVK-LSGTPFSSAFLDNGDCLVACG---DAHCFVQLNL  211 (294)
Q Consensus       164 -~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~g~~~v~~~---~~~~i~~~d~  211 (294)
                       ..+++|+++|...-... ..+-......-|.|+.+++.-   +...|.++..
T Consensus       234 ~R~iRVy~ReG~L~s~SE~v~gLe~~LsWrPsGnLIAs~Qr~~~~~dVVFFER  286 (928)
T PF04762_consen  234 RRVIRVYSREGALDSTSEPVDGLEHALSWRPSGNLIASIQRKPDRHDVVFFER  286 (928)
T ss_pred             EEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEC
T ss_conf             13799988887377524666676567648888878999996599845999915


No 16 
>PF04053 Coatomer_WDAD:  Coatomer WD associated region ;  InterPro: IPR006692   Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer . While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins . For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi . Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes . Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerize, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits.    This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region .   More information about these proteins can be found at Protein of the Month: Clathrin .; GO: 0005198 structural molecule activity, 0005515 protein binding, 0008565 protein transporter activity, 0006461 protein complex assembly, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat
Probab=97.84  E-value=0.00092  Score=40.86  Aligned_cols=200  Identities=16%  Similarity=0.077  Sum_probs=110.7

Q ss_pred             CCCEEEEECCCCEEE-EECCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
Q ss_conf             311647907983998-4188289975267703677237776314878737875899970589799998568958899970
Q T0558            56 ECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEF  134 (294)
Q Consensus        56 ~~~~~~~~pdG~~l~-s~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~dg~~l~~~s~~~~~~~~~~~~G~~~~~~~~  134 (294)
                      .+..+...|+|+.++ ++++...++....-.-     .......+..|.+++.+.+... +..+.+..+.+.+..+.++.
T Consensus        34 ~p~~ls~nPngr~v~V~g~gey~iyt~~~~r~-----k~~g~g~~~vw~~~n~yAv~~~-~~~I~i~knf~~~~~k~i~~  107 (444)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCGDGEYIIYTALAWRN-----KAFGSGLSFVWSSRNRYAVLEK-NSTIKIFKNFKEETTKSIKL  107 (444)
T ss_pred             CCEEEEECCCCCEEEEECCCEEEEEECCCCCC-----CCCCCCEEEEEECCCCEEEEEC-CCEEEEEECCCCCCCEEECC
T ss_conf             87148999988889996699899998246665-----5567631799977711899976-97599997578752307858


Q ss_pred             CCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEECCC
Q ss_conf             67767766740089996998999997469889999378-85889851697348988734896899735898799998789
Q T0558           135 ETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLES  213 (294)
Q Consensus       135 ~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d~~-g~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~~  213 (294)
                      +..       +..+ |.  |.+|... .++.|.+||.. ++.++...... +..+..+++|++++..+.+ .+++++.+-
T Consensus       108 ~~~-------~~~I-f~--G~LL~~~-~~~~i~~yDw~~~~~i~~I~v~~-vk~V~Ws~~g~~Val~~~~-~i~il~~~~  174 (444)
T PF04053_consen  108 PFS-------VEKI-FG--GNLLGVK-SSDFICFYDWEQGKLIRRIDVSP-VKNVIWSDDGELVALLTKD-SIYILKYNL  174 (444)
T ss_pred             CCC-------CCEE-EC--CEEEEEE-CCCCEEEEEHHHCCEEEEEECCC-CCEEEEECCCCEEEEEECC-EEEEEEECC
T ss_conf             977-------1727-73--6199997-79868998847854777996489-8579997886679998777-699998215


Q ss_pred             C---------------EEEEEECCCCCCCEEECCCC---------CEEECCCCCEEEEECCCCEEECCC--CCCCEEEEE
Q ss_conf             8---------------59998448876411411345---------348938998999804677143024--777569999
Q T0558           214 N---------------RIVRRVNANDIEGVQLFFVA---------QLFPLQNGGLYICNWQGHDREAGK--GKHPQLVEI  267 (294)
Q Consensus       214 g---------------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~G~i~i~~~~~~~~~~~~--~~~~~~~~i  267 (294)
                      .               +.+..++   .......|..         .+.++.+|...+............  ..+.+++.+
T Consensus       175 ~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d~fiYtT~~hLkYlv~G~~giI~~ld~~~Yllgy~~~~~~ly~~  251 (444)
T PF04053_consen  175 EAVEAEDDEEGIEDAFEVVHEIN---ERIKSGAWDGDVFIYTTSNHLKYLVNGESGIIAHLDKPLYLLGYLPKENRLYLL  251 (444)
T ss_pred             CCCCCCCCCCCCHHHEEEEEEEE---EEEEEEEEECCEEEEECCCEEEEEECCCCEEEEECCCCEEEEEEECCCCEEEEE
T ss_conf             33445665557033038887742---005567997679999736327999489322789758637999997579889999


Q ss_pred             CCCCCEE-EEE
Q ss_conf             0899899-998
Q T0558           268 DSEGKVV-WQL  277 (294)
Q Consensus       268 ~~~G~~v-W~~  277 (294)
                      |++++++ +.+
T Consensus       252 Dr~~~v~s~~l  262 (444)
T PF04053_consen  252 DRDGNVISYEL  262 (444)
T ss_pred             ECCCCEEEEEE
T ss_conf             78998899998


No 17 
>PF04841 Vps16_N:  Vps16, N-terminal region;  InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast . The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport . The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84  E-value=0.00092  Score=40.86  Aligned_cols=250  Identities=10%  Similarity=0.016  Sum_probs=129.0

Q ss_pred             CCCCCCCEEEEECCCC-EEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEE-EECCEEEEEECCCCCEEEEECCCCC
Q ss_conf             1478885899974798-6999988788299999449987311647907983998-4188289975267703677237776
Q T0558            18 QGSSPQHLLVGGSGWN-KIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGC   95 (294)
Q Consensus        18 ~~s~~~~~l~~gs~~~-~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~-s~~~~v~~~~~~~~~~~~~~~~~~~   95 (294)
                      ....+.+++..++... .|.+++. +|+++++.+..+ ..+..+.|+.+...++ ..++.+++++..|+.  ++..+...
T Consensus        45 l~rd~~k~~~~~~~~p~~I~Iys~-sG~ll~si~w~~-~~iv~l~wt~~e~LivV~~dG~v~~y~~~G~~--~fsl~~~~  120 (410)
T PF04841_consen   45 LIRDESKLVPLGSARPNSIRIYSS-SGKLLSSIPWDS-GRIVGLGWTDDEELIVVFEDGTVRVYDLFGEF--QFSLGEEA  120 (410)
T ss_pred             EEECCCCCCCCCCCCCCEEEEECC-CCCEEEEEEECC-CCEEEEEECCCCCEEEEECCCEEEEEECCCCE--EECCCCCC
T ss_conf             997676422255788767999978-897968988179-88789998778879999868989998067756--21445220


Q ss_pred             C--------EEEEEECCCCCEEEEEECCCCEEEEECCCCC-EEEEEECCCCCCC--CCCCCC--EEEECCCCCEEEEEEC
Q ss_conf             3--------1487873787589997058979999856895-8899970677677--667400--8999699899999746
Q T0558            96 E--------MQTARILPDGNALVAWCGHPSTILEVNMKGE-VLSKTEFETGIER--PHAQFR--QINKNKKGNYLVPLFA  162 (294)
Q Consensus        96 ~--------v~~~~~~~dg~~l~~~s~~~~~~~~~~~~G~-~~~~~~~~~~~~~--~~~~~~--~~~~s~dG~~i~~g~~  162 (294)
                      .        +....+..+|-.+  -..+..++.....+.. ..+.+...+....  +.....  ...++.+....+....
T Consensus       121 ~~~~v~~~~i~~~~f~~~Gvvv--Lt~~~~i~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~Vll~~  198 (410)
T PF04841_consen  121 EETGVVDCRIFAIWFWDNGVVV--LTSNNRIYVVNNFSEPVRPRNLPEIPTLITKNHWWPSWTEIPLLSVSRSVEVLLAN  198 (410)
T ss_pred             CCCCCCCCCCCCCEECCCCEEE--EECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEC
T ss_conf             0046644431010225776899--92698399992566653212346688754455656566752248267768999811


Q ss_pred             CCEEEEEECCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEECCCCEEEEEECCC-CCCCEEECCCCC--EEEC
Q ss_conf             9889999378858898516973489887348968997358987999987898599984488-764114113453--4893
Q T0558           163 TSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN-DIEGVQLFFVAQ--LFPL  239 (294)
Q Consensus       163 d~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~--~~~~  239 (294)
                      +..++..+....  ......+++....++|+|+.++.-..++++.+....=.+....++.. ...-..+.+.+.  +...
T Consensus       199 g~~l~~i~~~~~--~~i~~~g~~~~msvSpng~~lAl~t~~g~l~v~ssdf~~~~~e~~~~~~~~p~~m~WCG~daV~l~  276 (410)
T PF04841_consen  199 GETLYLIDEHSF--KQIDSRGPITHMSVSPNGKFLALFTDDGKLWVVSSDFSKKLCEYDTDSKSPPKQMEWCGNDAVVLS  276 (410)
T ss_pred             CCEEEEEECCCE--EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCHHHCEEEECCCCCCCCCEEEEECCCCEEEE
T ss_conf             993799983540--460468974899998999879999779859999883221004412576789756589579858898


Q ss_pred             CCCCEEEEECCCCEEECCCCCCCEEEEECCCCCEEEE
Q ss_conf             8998999804677143024777569999089989999
Q T0558           240 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ  276 (294)
Q Consensus       240 ~~G~i~i~~~~~~~~~~~~~~~~~~~~i~~~G~~vW~  276 (294)
                      -...+++.+-.+......-... ..+.-..||-.|-.
T Consensus       277 ~~~~l~lvg~~~~~~~~~~~~~-~~l~~E~DGvrI~t  312 (410)
T PF04841_consen  277 WEDELLLVGPDGDSIDFYYDGP-PILVPEIDGVRIIT  312 (410)
T ss_pred             ECCEEEEECCCCCCEEEEECCC-EEEEECCCEEEEEE
T ss_conf             3558999889987558752782-19984388679975


No 18 
>PF04762 IKI3:  IKI3 family;  InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation .
Probab=97.83  E-value=0.00097  Score=40.72  Aligned_cols=153  Identities=16%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             HCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEECC-----------------------CCC-----------------
Q ss_conf             0014788858999747986999988788299999449-----------------------987-----------------
Q T0558            16 FAQGSSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLE-----------------------KGW-----------------   55 (294)
Q Consensus        16 ~~~~s~~~~~l~~gs~~~~i~~~d~~tg~~~w~~~~~-----------------------~~~-----------------   55 (294)
                      .++=|+++++|+...+++++.++.. +-+.+-|.++.                       .+.                 
T Consensus       125 a~~Wspd~e~l~~~t~~~~~l~Mt~-~fe~i~E~~l~~dd~~~~~~VsVGWGkkETQF~G~~gK~a~lr~pt~~~~~~~~  203 (928)
T PF04762_consen  125 AAAWSPDEELLALVTGENTLLLMTR-DFEPIAEQPLDSDDFGESKHVSVGWGKKETQFHGSGGKAAALRDPTVPKVDEGK  203 (928)
T ss_pred             EEEECCCCCEEEEEECCCEEEEEEC-CCEEEEEEECCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9887798547999967976999924-540877752370104767603447886000615754432212488876556576


Q ss_pred             -----CCCEEEEECCCCEEEEE------C--CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC--CCCEEE
Q ss_conf             -----31164790798399841------8--82899752677036772377763148787378758999705--897999
Q T0558            56 -----ECNSVAATKAGEILFSY------S--KGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCG--HPSTIL  120 (294)
Q Consensus        56 -----~~~~~~~~pdG~~l~s~------~--~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~dg~~l~~~s~--~~~~~~  120 (294)
                           .-..+++..||.+++.+      +  ..+++|+.+|. +-....+-..--..++|-|.|+++++..+  +..-++
T Consensus       204 ls~Dd~~~~ISWRGDG~yfAVs~~~~~~~~~R~iRVy~ReG~-L~s~SE~v~gLe~~LsWrPsGnLIAs~Qr~~~~~dVV  282 (928)
T PF04762_consen  204 LSWDDGRVSISWRGDGAYFAVSSVEPESGQRRVIRVYSREGA-LDSTSEPVDGLEHALSWRPSGNLIASIQRKPDRHDVV  282 (928)
T ss_pred             CCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCC-EEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
T ss_conf             545789637998688878999988716887137999888873-7752466667656764888887899999659984599


Q ss_pred             EECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             98568958899970677677667400899969989999974698899993788
Q T0558           121 EVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG  173 (294)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d~~g  173 (294)
                      ++-++|-.-.+|.+....  ....+..+.++.|+..|++-..|. |.+|....
T Consensus       283 FFERNGLRHgeF~L~~~~--~~~~v~~L~WNsDS~iLAV~~~d~-VQLWT~gN  332 (928)
T PF04762_consen  283 FFERNGLRHGEFTLRFDP--EEEKVISLAWNSDSDILAVWLEDR-VQLWTTGN  332 (928)
T ss_pred             EEECCCCEECEEEECCCC--CCCCEEEEEECCCCCEEEEEECCE-EEEEEECC
T ss_conf             991598272527504567--665045759989798899998581-99998058


No 19 
>PF05096 Glu_cyclase_2:  Glutamine cyclotransferase;  InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively . This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 2faw_A 2iwa_A.
Probab=97.75  E-value=0.0013  Score=39.83  Aligned_cols=199  Identities=11%  Similarity=0.067  Sum_probs=124.1

Q ss_pred             CEEEEEEECCCCCCCCEEEEECCCCEEEEE----CCEEEEEECCCCCE-EEEECCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf             829999944998731164790798399841----88289975267703-6772377763148787378758999705897
Q T0558            43 KEIVWEYPLEKGWECNSVAATKAGEILFSY----SKGAKMITRDGREL-WNIAAPAGCEMQTARILPDGNALVAWCGHPS  117 (294)
Q Consensus        43 g~~~w~~~~~~~~~~~~~~~~pdG~~l~s~----~~~v~~~~~~~~~~-~~~~~~~~~~v~~~~~~~dg~~l~~~s~~~~  117 (294)
                      -+++.++|-+...---.+.|.+||..+-|.    ...++.++..++++ .+...+......++....|. ....+=.++.
T Consensus        33 ~~Vv~~yPHd~~aFTQGL~~~~~~~LyESTG~yG~S~lr~~dl~tg~v~~~~~L~~~~FgEGit~~~d~-i~qLTWk~~~  111 (264)
T PF05096_consen   33 YEVVNTYPHDPNAFTQGLEFLHDGTLYESTGLYGQSSLRKVDLETGKVLQSTDLPSRYFGEGITIVGDK-IYQLTWKEGV  111 (264)
T ss_dssp             EEEEEEEE--TT------EE-STTEEEEEE------EEEEEES----EEEEEE--TT------EEETTE-EE---TT---
T ss_pred             EEEEEECCCCCCCCCCCEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEEECCE-EEEEEECCCE
T ss_conf             599997789986657747973799899947987667799997787869999988845536448998999-9999966882


Q ss_pred             EEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEEC--CCEEEE---EEEE
Q ss_conf             9999856895889997067767766740089996998999997469889999378-858898516--973489---8873
Q T0558           118 TILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL--SGTPFS---SAFL  191 (294)
Q Consensus       118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d~~-g~~~~~~~~--~~~~~~---~~~~  191 (294)
                      .++++..+-+.+.++....+..+         ...||+.|+.......++..|++ .+.......  .+.|..   -...
T Consensus       112 ~fvyD~~tl~~~~~~~y~~EGWG---------Lt~d~~~L~~SDGS~~L~~ldP~tf~~~~~i~V~~~g~pv~~lNELE~  182 (264)
T PF05096_consen  112 GFVYDANTLEELGTFPYPGEGWG---------LTNDGQRLIMSDGSNKLYFLDPETFAETGSIQVTDNGRPVRRLNELEY  182 (264)
T ss_dssp             --EEETTT--EEE--------------------EE----EE------EEEEE-TTT--EEEEEE-B----B---EEEEEE
T ss_pred             EEEECCCHHEEEEEEECCCCCEE---------EEECCCEEEEECCCCCEEEECHHHCEEEEEEEEEECCEECCCCEEEEE
T ss_conf             79980613106789932896167---------965899999989967559988178169999999989988776155799


Q ss_pred             CCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCC---------EEECCCCCEEECC-CCCEEEEECCC
Q ss_conf             489689973589879999878985999844887641---------1411345348938-99899980467
Q T0558           192 DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG---------VQLFFVAQLFPLQ-NGGLYICNWQG  251 (294)
Q Consensus       192 ~~g~~~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~G~i~i~~~~~  251 (294)
                      .+|.+++-.=..+.|..+|+++|++..-+......-         ....-.+++++.+ ++++++.+..+
T Consensus       183 v~G~IyANVw~td~I~~Idp~tG~V~~~idls~L~~~~~~~~~~~~~~dVLNGIA~d~~~~~l~VTGK~W  252 (264)
T PF05096_consen  183 VDGEIYANVWQTDRIVRIDPETGKVTGWIDLSGLLPPAGRDGSRHPDNDVLNGIAYDPETDRLFVTGKNW  252 (264)
T ss_dssp             ----EEEEETTSSEEEEE-S----B---EE-HHHHHHHHH---T--T-------EEETTTTEEEE-----
T ss_pred             ECCEEEEEECCCCEEEEEECCCCEEEEEEECHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCC
T ss_conf             9999999977887499993898829999994324221023434344677057477828999899973788


No 20 
>PF00930 DPPIV_N:  Dipeptidyl peptidase IV (DPP IV) N-terminal region;  InterPro: IPR002469   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO.   CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis.    Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H_(2)O = Dipeptide + Polypeptide  It is a type II membrane protein that forms a homodimer.    CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://mpr.nci.nih.gov/prow/).  ; GO: 0004274 dipeptidyl-peptidase IV activity, 0006508 proteolysis, 0016020 membrane; PDB: 1z68_B 2oae_A 2gbi_A 2i3z_B 2gbg_A 2gbf_B 2gbc_B 3d4l_B 3ccb_B 2i03_A ....
Probab=97.72  E-value=0.0014  Score=39.51  Aligned_cols=200  Identities=13%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             CCCCCEEEEE---------CCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEE-EECCEEEEEECCCCCEEEE
Q ss_conf             7888589997---------47986999988788299999449987311647907983998-4188289975267703677
Q T0558            20 SSPQHLLVGG---------SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNI   89 (294)
Q Consensus        20 s~~~~~l~~g---------s~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~-s~~~~v~~~~~~~~~~~~~   89 (294)
                      |++.++++..         |..+.+.++|.+++++. +.. ..........++|||+.++ ..+.++++.+...+...+.
T Consensus         1 S~d~~~~l~~~~~~~~~R~s~~~~y~~~di~~~~~~-~l~-~~~~~~~~~~~SPdg~~~afv~~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKYVLLATNVKKQWRHSSFGDYYLYDISTGKIK-PLT-PSPGKLQDPKWSPDGNWIAFVRDNNLYVRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE-ESS--EETTBSEEEE------EEEEETTEEEEESSTTS-EEEC
T ss_pred             CCCCCEEEEEECCEEEEEECCCCEEEEEECCCCCEE-ECC-CCCCCCCCCEECCCCCEEEEEECCEEEEEECCCCCEEEE
T ss_conf             997486999987568435514224999989889789-877-997644364699999979999798589998899964888


Q ss_pred             ECCCC-----------------CCEEEEEECCCCCEEEEEECCCCE-----EEEECCCCC---EEEEEECC---------
Q ss_conf             23777-----------------631487873787589997058979-----999856895---88999706---------
Q T0558            90 AAPAG-----------------CEMQTARILPDGNALVAWCGHPST-----ILEVNMKGE---VLSKTEFE---------  135 (294)
Q Consensus        90 ~~~~~-----------------~~v~~~~~~~dg~~l~~~s~~~~~-----~~~~~~~G~---~~~~~~~~---------  135 (294)
                      +....                 ..-.++-|+||+++|+...-|.+.     +......+.   .+.+++.+         
T Consensus        79 T~dg~~~i~~G~~dwvyeEEi~~~~~~~wWSPD~~~la~~~~D~s~V~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGENDIFNGVPDWVYEEEIFGRNSALWWSPDSKYLAFARFDESKVPEYHLPDYSPPDSQYPELHSIRYPKAGDPNPKV  158 (353)
T ss_dssp             E---TTTEE-----HHHHHHTTSSS--EEE-TTSSEEEEEEEE-TTS-EEEEEEE-STTESS-EEEEEE--B------EE
T ss_pred             CCCCCCCEECCCCCCCCCCHHCCCCCCEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             07986435537764212410026566569999999899999789887399988406864468643435788994949867


Q ss_pred             --------CCC----------CCCCCCCCEEEECCCCC-EEEE-EECC---CEEEEEECC-CCEEEEEEC--CCE---EE
Q ss_conf             --------776----------77667400899969989-9999-7469---889999378-858898516--973---48
Q T0558           136 --------TGI----------ERPHAQFRQINKNKKGN-YLVP-LFAT---SEVREIAPN-GQLLNSVKL--SGT---PF  186 (294)
Q Consensus       136 --------~~~----------~~~~~~~~~~~~s~dG~-~i~~-g~~d---~~i~~~d~~-g~~~~~~~~--~~~---~~  186 (294)
                              .+.          .....-+..+.+.+|++ +++. ...+   ..+...|.. |...+....  ...   ..
T Consensus       159 ~l~v~~~~~~~~~~v~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 RLGVVDLASGKTTEVDPPDALNPRDYYLTRVGWSPDGNKLLVQWLNRDQNRLDLLLCDPETGQTRVILEETSDGWVDPHN  238 (353)
T ss_dssp             EEEEEECCCTTTTEE---HHHHCSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTEEEEEEEE-SS---SSS
T ss_pred             EEEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCCEECCC
T ss_conf             99999888997887247422577771888869878995699998036898899999989888488899724797467335


Q ss_pred             EEEEE-CCCCE-EEECCCCC--EEEEEECCCCEEEEEECC
Q ss_conf             98873-48968-99735898--799998789859998448
Q T0558           187 SSAFL-DNGDC-LVACGDAH--CFVQLNLESNRIVRRVNA  222 (294)
Q Consensus       187 ~~~~~-~~g~~-~v~~~~~~--~i~~~d~~~g~~~~~~~~  222 (294)
                      ...+. +++.. +...-.++  .+++++..++++. .++.
T Consensus       239 ~~~~~~~~~~~~l~~ser~G~~hLy~~~~~~~~~~-~lT~  277 (353)
T PF00930_consen  239 PPPFLLPDGSRFLWISERDGYRHLYLYDLDGGKPR-QLTS  277 (353)
T ss_dssp             -EEE--TTSSEEEEEEE---EEEEEEEESTCSEEE-ES--
T ss_pred             CCEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE-ECCC
T ss_conf             64058579987999998089638999958999346-0565


No 21 
>PF00930 DPPIV_N:  Dipeptidyl peptidase IV (DPP IV) N-terminal region;  InterPro: IPR002469   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO.   CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis.    Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H_(2)O = Dipeptide + Polypeptide  It is a type II membrane protein that forms a homodimer.    CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://mpr.nci.nih.gov/prow/).  ; GO: 0004274 dipeptidyl-peptidase IV activity, 0006508 proteolysis, 0016020 membrane; PDB: 1z68_B 2oae_A 2gbi_A 2i3z_B 2gbg_A 2gbf_B 2gbc_B 3d4l_B 3ccb_B 2i03_A ....
Probab=97.61  E-value=0.002  Score=38.45  Aligned_cols=228  Identities=10%  Similarity=0.029  Sum_probs=123.9

Q ss_pred             HHCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCC-----------------CCCCEEEEECCCCEEEEE---CC
Q ss_conf             2001478885899974798699998878829999944998-----------------731164790798399841---88
Q T0558            15 PFAQGSSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-----------------WECNSVAATKAGEILFSY---SK   74 (294)
Q Consensus        15 ~~~~~s~~~~~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~-----------------~~~~~~~~~pdG~~l~s~---~~   74 (294)
                      ..+..|++++.++--.++ .|++.+..+++... ...++.                 ..-..+.++|||+.|+..   +.
T Consensus        46 ~~~~~SPdg~~~afv~~~-nly~~~~~~~~~~~-lT~dg~~~i~~G~~dwvyeEEi~~~~~~~wWSPD~~~la~~~~D~s  123 (353)
T PF00930_consen   46 QDPKWSPDGNWIAFVRDN-NLYVRDLATGQETQ-LTTDGENDIFNGVPDWVYEEEIFGRNSALWWSPDSKYLAFARFDES  123 (353)
T ss_dssp             SEEEE------EEEEETT-EEEEESSTTS-EEE-CE---TTTEE-----HHHHHHTTSSS--EEE-TTSSEEEEEEEE-T
T ss_pred             CCCEECCCCCEEEEEECC-EEEEEECCCCCEEE-ECCCCCCCEECCCCCCCCCCHHCCCCCCEEECCCCCEEEEEEECCC
T ss_conf             364699999979999798-58999889996488-8079864355377642124100265665699999998999997898


Q ss_pred             -----------------------------------EEEEEECCCCCEEEEE-----CCCCCCEEEEEECCCCCEEE--EE
Q ss_conf             -----------------------------------2899752677036772-----37776314878737875899--97
Q T0558            75 -----------------------------------GAKMITRDGRELWNIA-----APAGCEMQTARILPDGNALV--AW  112 (294)
Q Consensus        75 -----------------------------------~v~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~dg~~l~--~~  112 (294)
                                                         .+.+++.+++...+..     ......+..+.|.+|++.++  ..
T Consensus       124 ~V~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~v~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~  203 (353)
T PF00930_consen  124 KVPEYHLPDYSPPDSQYPELHSIRYPKAGDPNPKVRLGVVDLASGKTTEVDPPDALNPRDYYLTRVGWSPDGNKLLVQWL  203 (353)
T ss_dssp             TS-EEEEEEE-STTESS-EEEEEE--B------EEEEEEEECCCTTTTEE---HHHHCSSEEEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEE
T ss_conf             87399988406864468643435788994949867999998889978872474225777718888698789956999980


Q ss_pred             ECCCC---EEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEC-CCCC-EEEEEECCC--EEEEEECCCCEEEEEECCC-E
Q ss_conf             05897---9999856895889997067767766740089996-9989-999974698--8999937885889851697-3
Q T0558           113 CGHPS---TILEVNMKGEVLSKTEFETGIERPHAQFRQINKN-KKGN-YLVPLFATS--EVREIAPNGQLLNSVKLSG-T  184 (294)
Q Consensus       113 s~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s-~dG~-~i~~g~~d~--~i~~~d~~g~~~~~~~~~~-~  184 (294)
                      +++..   +...+..+|++.+.........  -.......+. +++. ++.....+|  .+++++.+++.......+. .
T Consensus       204 nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W--v~~~~~~~~~~~~~~~~l~~ser~G~~hLy~~~~~~~~~~~lT~G~~~  281 (353)
T PF00930_consen  204 NRDQNRLDLLLCDPETGQTRVILEETSDGW--VDPHNPPPFLLPDGSRFLWISERDGYRHLYLYDLDGGKPRQLTSGNWE  281 (353)
T ss_dssp             ETTSTEEEEEEEEECTTTEEEEEEEE-SS-----SSS-EEE--TTSSEEEEEEE---EEEEEEEESTCSEEEES------
T ss_pred             CCCCCEEEEEEEECCCCEEEEEEECCCCCC--EECCCCCEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEECCCCCEE
T ss_conf             368988999999898884888997247974--673356405857998799999808963899995899934605656537


Q ss_pred             EEE-EEEECCCCE-EEECCCC----CEEEEEECC-CCEEEEEECCCCCCCEEECCCCCEEECCCCCEEEEECCCCE
Q ss_conf             489-887348968-9973589----879999878-98599984488764114113453489389989998046771
Q T0558           185 PFS-SAFLDNGDC-LVACGDA----HCFVQLNLE-SNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHD  253 (294)
Q Consensus       185 ~~~-~~~~~~g~~-~v~~~~~----~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~i~~~~~~~  253 (294)
                      +.+ ..+..+++. ++.+..+    ..++.+++. ++++..-.......       .+..+.++|++++..+.+.+
T Consensus       282 V~~i~~~d~~~~~vYf~a~~~~p~~~hlY~v~l~~~~~~~~LT~~~~~~-------~s~~~S~~~~y~v~~ys~~~  350 (353)
T PF00930_consen  282 VTSILGVDEDGNLVYFTANEDDPYERHLYRVSLDGGGKPTRLTPEDGDH-------YSASFSPDGKYYVDTYSGPD  350 (353)
T ss_dssp             EEEEEEEEEESSEEEEEESSC-TT-BEEEEEETTETTEEEESSTTTSTT-------EEEEE-TTSSEEEEEEEETT
T ss_pred             ECCCEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCEEECCCCCCCC-------EEEEECCCCCEEEEEECCCC
T ss_conf             5452149488999999995999984799999888899818898999874-------68999999999999886899


No 22 
>PF05096 Glu_cyclase_2:  Glutamine cyclotransferase;  InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively . This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 2faw_A 2iwa_A.
Probab=97.46  E-value=0.0029  Score=37.23  Aligned_cols=151  Identities=16%  Similarity=0.127  Sum_probs=98.9

Q ss_pred             CCCCCEEEEEECCCCCEEEEEECC--CCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEE
Q ss_conf             777631487873787589997058--979999856895889997067767766740089996998999997469889999
Q T0558            92 PAGCEMQTARILPDGNALVAWCGH--PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI  169 (294)
Q Consensus        92 ~~~~~v~~~~~~~dg~~l~~~s~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~  169 (294)
                      ........+.+..+|..+-+++..  +.+...+..+|++..+..++...-+.     .+... +++++.-.-.++...+|
T Consensus        42 d~~aFTQGL~~~~~~~LyESTG~yG~S~lr~~dl~tg~v~~~~~L~~~~FgE-----Git~~-~d~i~qLTWk~~~~fvy  115 (264)
T PF05096_consen   42 DPNAFTQGLEFLHDGTLYESTGLYGQSSLRKVDLETGKVLQSTDLPSRYFGE-----GITIV-GDKIYQLTWKEGVGFVY  115 (264)
T ss_dssp             -TT------EE-STTEEEEEE------EEEEEES----EEEEEE--TT-----------EEE-TTEEE---TT-----EE
T ss_pred             CCCCCCCCEEECCCCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEE-----EEEEE-CCEEEEEEECCCEEEEE
T ss_conf             9866577479737998999479876677999977878699999888455364-----48998-99999999668827998


Q ss_pred             ECC-CCEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEECCCCCEEECCCCCEEEEE
Q ss_conf             378-8588985169734898873489689973589879999878985999844887641141134534893899899980
Q T0558           170 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  248 (294)
Q Consensus       170 d~~-g~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~i~~  248 (294)
                      |.+ -+.+.++.....-+...  .+|+.++.+..++.++++|+++-++..+++-.+ .+......+...+. +|.++..-
T Consensus       116 D~~tl~~~~~~~y~~EGWGLt--~d~~~L~~SDGS~~L~~ldP~tf~~~~~i~V~~-~g~pv~~lNELE~v-~G~IyANV  191 (264)
T PF05096_consen  116 DANTLEELGTFPYPGEGWGLT--NDGQRLIMSDGSNKLYFLDPETFAETGSIQVTD-NGRPVRRLNELEYV-DGEIYANV  191 (264)
T ss_dssp             ETTT--EEE-----------E--E----EE------EEEEE-TTT--EEEEEE-B-----B---EEEEEE-----EEEEE
T ss_pred             CCCHHEEEEEEECCCCCEEEE--ECCCEEEEECCCCCEEEECHHHCEEEEEEEEEE-CCEECCCCEEEEEE-CCEEEEEE
T ss_conf             061310678993289616796--589999998996755998817816999999998-99887761557999-99999997


Q ss_pred             CCCC
Q ss_conf             4677
Q T0558           249 WQGH  252 (294)
Q Consensus       249 ~~~~  252 (294)
                      |+..
T Consensus       192 w~td  195 (264)
T PF05096_consen  192 WQTD  195 (264)
T ss_dssp             TTSS
T ss_pred             CCCC
T ss_conf             7887


No 23 
>PF08553 VID27:  VID27 cytoplasmic protein;  InterPro: IPR013863    This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) , .
Probab=96.94  E-value=0.0055  Score=35.20  Aligned_cols=141  Identities=15%  Similarity=0.113  Sum_probs=87.1

Q ss_pred             CCCEEEE-ECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEE-------ECCCCEEEEECCEEEEEECC--C-CCEEEEE
Q ss_conf             8858999-7479869999887882999994499873116479-------07983998418828997526--7-7036772
Q T0558            22 PQHLLVG-GSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAA-------TKAGEILFSYSKGAKMITRD--G-RELWNIA   90 (294)
Q Consensus        22 ~~~~l~~-gs~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~-------~pdG~~l~s~~~~v~~~~~~--~-~~~~~~~   90 (294)
                      +.+.|+- ....++|+-+|.++||++-++..+.-..+..++.       ++...++..++..++.||.-  + +.++...
T Consensus       486 d~~Mll~~~~~~~~ly~mDLe~GKIV~eW~~~~d~~v~~~~~~sK~aqlt~e~tflGls~n~lfriDpRl~~~klv~~~~  565 (788)
T PF08553_consen  486 DRNMLLLSPENPNKLYQMDLERGKIVEEWKVEDDIPVVDIAPDSKFAQLTSEQTFLGLSDNSLFRIDPRLSGNKLVQSQS  565 (788)
T ss_pred             CCCEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCEEECCC
T ss_conf             66269746988783388754788688885258876603742565534367775189987783498745668871451134


Q ss_pred             CC-CC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEE
Q ss_conf             37-77-63148787378758999705897999985689588999706776776674008999699899999746988999
Q T0558            91 AP-AG-CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE  168 (294)
Q Consensus        91 ~~-~~-~~v~~~~~~~dg~~l~~~s~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~  168 (294)
                      .. .. ....+++-+.+ .++++++.++.+++++ ..|+.     ......+...++.++..+.||+++++.+. ..+.+
T Consensus       566 k~Y~~~~~Fs~~aTT~~-G~iavgS~~G~IRLyd-~~gk~-----AKT~lp~lG~PIi~iDVT~DGkWiLaTc~-tyLlL  637 (788)
T PF08553_consen  566 KQYASKNNFSCAATTED-GYIAVGSNKGDIRLYD-RLGKR-----AKTALPGLGDPIIGIDVTADGKWILATCD-TYLLL  637 (788)
T ss_pred             CCCCCCCCCEEEEECCC-CEEEEECCCCCEEECC-CCCCH-----HHHCCCCCCCCEEEEEECCCCCEEEEEEC-CEEEE
T ss_conf             22446887048985699-6599960898578606-66713-----32227878997367796578848999705-35999


Q ss_pred             EE
Q ss_conf             93
Q T0558           169 IA  170 (294)
Q Consensus       169 ~d  170 (294)
                      .+
T Consensus       638 i~  639 (788)
T PF08553_consen  638 ID  639 (788)
T ss_pred             EE
T ss_conf             98


No 24 
>PF06433 Me-amine-dh_H:  Methylamine dehydrogenase heavy chain (MADH);  InterPro: IPR009451   Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria . It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO).  RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor    MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure .; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0042597 periplasmic space; PDB: 3c75_H 1mg2_A 2j57_J 2mta_H 2gc4_I 2gc7_I 2j55_J 1mg3_I 2bbk_H 2j56_J ....
Probab=96.91  E-value=0.011  Score=33.15  Aligned_cols=175  Identities=10%  Similarity=0.062  Sum_probs=100.1

Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEE------------CCEEEEEECCCCCEEE-EECCCC----
Q ss_conf             98699998878829999944998731164790798399841------------8828997526770367-723777----
Q T0558            32 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY------------SKGAKMITRDGRELWN-IAAPAG----   94 (294)
Q Consensus        32 ~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~------------~~~v~~~~~~~~~~~~-~~~~~~----   94 (294)
                      .++++++|.++++++=....+  . ...+.++|||+.++..            ..-+.+||...-.... ...+..    
T Consensus        16 ~~rv~viD~d~~~~lGmi~~g--~-~~~~~~s~dg~~~y~a~T~ysR~~rG~RtDvV~v~D~~tL~p~~EI~iP~k~R~~   92 (342)
T PF06433_consen   16 TGRVYVIDGDSGKVLGMIDTG--F-FGNFVLSPDGKFIYVAETFYSRGTRGERTDVVTVYDTQTLSPTAEIVIPPKPRFQ   92 (342)
T ss_dssp             SEEEEEEETT---B---BEEE--B---EEEE-----EEEEEEEEEEETTE-EEEEEEEEEETTTTEEEEEEEETTT-B--
T ss_pred             CCEEEEEECCCCCEEEEEECC--C-CCCEEECCCCCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCEECCCCCCEE
T ss_conf             013999979888377766336--4-6651588999889998788705565530268999706667622337669876335


Q ss_pred             --CCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEE-
Q ss_conf             --63148787378758999705--8979999856895889997067767766740089996998999997469889999-
Q T0558            95 --CEMQTARILPDGNALVAWCG--HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI-  169 (294)
Q Consensus        95 --~~v~~~~~~~dg~~l~~~s~--~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~-  169 (294)
                        ......++++|++++++..-  ...+-+.|....+.+.+...++       +.. +-.+++ +-+...+.||.+... 
T Consensus        93 ~~~~~~~~~ls~d~k~l~v~N~TPa~SVtVVDl~~~k~v~eid~PG-------C~~-iyP~~~-~~F~~lC~DGsl~~v~  163 (342)
T PF06433_consen   93 AGPYKGMFALSADGKFLLVFNFTPAQSVTVVDLAAKKFVREIDTPG-------CAL-IYPTGN-RGFSMLCGDGSLLSVT  163 (342)
T ss_dssp             ----GGGEEE-TTSSEEEE-BESSSEEE-EEES---EEEEEEEG-S-------EEE-EEEEET-TEEEEEE----EEEEE
T ss_pred             ECCCCCCEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCC-------EEE-EEECCC-CCEEEEECCCCEEEEE
T ss_conf             1234652365559839999836887656899854462144505798-------799-966699-8517885698238999


Q ss_pred             -ECCCCEEEEEE-----CCCEEEEEE-EECCCCEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             -37885889851-----697348988-73489689973589879999878985999
Q T0558           170 -APNGQLLNSVK-----LSGTPFSSA-FLDNGDCLVACGDAHCFVQLNLESNRIVR  218 (294)
Q Consensus       170 -d~~g~~~~~~~-----~~~~~~~~~-~~~~g~~~v~~~~~~~i~~~d~~~g~~~~  218 (294)
                       |.+|+......     ..+.+..-+ .....+.++-.+..+.++..+.......+
T Consensus       164 lD~~G~~~~~~t~~F~~~~dplf~~~a~~~~~~~~~F~sy~G~v~~~~l~~~~~~~  219 (342)
T PF06433_consen  164 LDDDGKETQRRTEVFFPDDDPLFEHPAYSRKTGRLVFPSYEGNVYQADLSGDKAKF  219 (342)
T ss_dssp             -------EEEE---SSTTTS-B-S--EE-STEEEEEEEB----EEEEE------EE
T ss_pred             ECCCCCEEEECCCCCCCCCCCCCCCCCEECCCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf             78999787621577666774212355327789859998437779987316886542


No 25 
>PF07250 Glyoxal_oxid_N:  Glyoxal oxidase N-terminus;  InterPro: IPR009880   This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium .
Probab=96.80  E-value=0.013  Score=32.55  Aligned_cols=182  Identities=13%  Similarity=0.097  Sum_probs=103.0

Q ss_pred             CCCEEEEEECCC-CEEEEEEECCCCCCCCEEEEECCCCEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf             798699998878-829999944998731164790798399841-882899752677036772377763148787378758
Q T0558            31 GWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGEILFSY-SKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNA  108 (294)
Q Consensus        31 ~~~~i~~~d~~t-g~~~w~~~~~~~~~~~~~~~~pdG~~l~s~-~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~dg~~  108 (294)
                      .+++|.++|... |.-.-+  +..+. |.   ..|.....-.+ --.-.+||................+.+-.+.+||.+
T Consensus         7 ~~~~v~~~d~t~~g~s~~~--l~~~~-cr---~~~~~~~~~~d~~a~s~~~D~~tn~~rpl~v~td~FCSgg~~L~dG~l   80 (243)
T PF07250_consen    7 HNNKVIMFDRTNFGPSNIS--LPDGR-CR---NNPEDNALKIDCTAHSVEYDPATNTFRPLPVQTDTFCSGGAFLPDGRL   80 (243)
T ss_pred             CCCEEEEEECCCCCCCCCC--CCCCC-CC---CCCCCHHHCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCE
T ss_conf             3997999968676645310--69982-65---675001013684088998836889887035734775667579989999


Q ss_pred             EEEEECCCC---EEEEECC--CCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECC---CCEE--EE
Q ss_conf             999705897---9999856--895889997067767766740089996998999997469889999378---8588--98
Q T0558           109 LVAWCGHPS---TILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN---GQLL--NS  178 (294)
Q Consensus       109 l~~~s~~~~---~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d~~---g~~~--~~  178 (294)
                      +.++....+   +.++...  .+.+-|......  ....-..-....-+||+.|+.|....--+.+-+.   +...  +.
T Consensus        81 l~tGG~~~G~~~iR~~~P~~~~~~~dW~e~~~~--L~~~RWYpT~~~L~DG~vlIiGG~~~~~~E~~P~~~~~~~~~~~~  158 (243)
T PF07250_consen   81 LQTGGDFDGNKGIRIFDPCGSDGTCDWVESPNQ--LQAGRWYPTAQTLPDGRVLIIGGRRNPTYEFFPPIGPGPGPVNLP  158 (243)
T ss_pred             EEECCCCCCCEEEEEEECCCCCCCCCEEECCCC--CCCCCCCCCCEECCCCCEEEEECCCCCCEEECCCCCCCCCCEECC
T ss_conf             983786777600699607888887771765774--457865566249899989999488888310778876788725210


Q ss_pred             EEC------CCE-EEEEEEECCCCEEEECCCCCEEEEEECCCCEEEEEECC
Q ss_conf             516------973-48988734896899735898799998789859998448
Q T0558           179 VKL------SGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  222 (294)
Q Consensus       179 ~~~------~~~-~~~~~~~~~g~~~v~~~~~~~i~~~d~~~g~~~~~~~~  222 (294)
                      +..      ... --.+...|+|++++.+..+.  .++|..++++++.+..
T Consensus       159 ~L~~t~~~~~~nlYPf~~LlPdG~lFi~an~~s--~i~D~~t~~vv~~lP~  207 (243)
T PF07250_consen  159 FLADTNDTQPNNLYPFVHLLPDGNLFIFANNRS--IILDYNTNTVVRDLPN  207 (243)
T ss_pred             HHHHHCCCCCCCCCCEEEECCCCCEEEEECCCC--EEECCCCCEEEEECCC
T ss_conf             202231367666572699858998999984774--8871889959764788


No 26 
>PF04841 Vps16_N:  Vps16, N-terminal region;  InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast . The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport . The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.80  E-value=0.013  Score=32.55  Aligned_cols=50  Identities=12%  Similarity=0.124  Sum_probs=20.3

Q ss_pred             EEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf             89975267703677237776314878737875899970589799998568958
Q T0558            76 AKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEV  128 (294)
Q Consensus        76 v~~~~~~~~~~~~~~~~~~~~v~~~~~~~dg~~l~~~s~~~~~~~~~~~~G~~  128 (294)
                      +.+|+..|..+++..-.+ ..+..+.|+.+.+.+ +...|+.+++. +..|+.
T Consensus        63 I~Iys~sG~ll~si~w~~-~~iv~l~wt~~e~Li-vV~~dG~v~~y-~~~G~~  112 (410)
T PF04841_consen   63 IRIYSSSGKLLSSIPWDS-GRIVGLGWTDDEELI-VVFEDGTVRVY-DLFGEF  112 (410)
T ss_pred             EEEECCCCCEEEEEEECC-CCEEEEEECCCCCEE-EEECCCEEEEE-ECCCCE
T ss_conf             999978897968988179-887899987788799-99868989998-067756


No 27 
>PF07250 Glyoxal_oxid_N:  Glyoxal oxidase N-terminus;  InterPro: IPR009880   This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium .
Probab=96.62  E-value=0.017  Score=31.67  Aligned_cols=139  Identities=19%  Similarity=0.186  Sum_probs=58.1

Q ss_pred             EEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEC-----CEEEEEECCC---CCEEEEECC---CCCCEEEEEE
Q ss_conf             6999988788299999449987311647907983998418-----8289975267---703677237---7763148787
Q T0558            34 KIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYS-----KGAKMITRDG---RELWNIAAP---AGCEMQTARI  102 (294)
Q Consensus        34 ~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~~-----~~v~~~~~~~---~~~~~~~~~---~~~~v~~~~~  102 (294)
                      .=.+||..|+++. ...+....-|++-++.|||+++.++.     ..+++++..+   ..-|.....   ..-+=-+...
T Consensus        47 ~s~~~D~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~iR~~~P~~~~~~~dW~e~~~~L~~~RWYpT~~~  125 (243)
T PF07250_consen   47 HSVEYDPATNTFR-PLPVQTDTFCSGGAFLPDGRLLQTGGDFDGNKGIRIFDPCGSDGTCDWVESPNQLQAGRWYPTAQT  125 (243)
T ss_pred             EEEEEECCCCCEE-ECCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCEE
T ss_conf             8998836889887-035734775667579989999983786777600699607888887771765774457865566249


Q ss_pred             CCCCCEEEEEECCCCEEEEECCC--CCEEEEEECCCCC--CCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCE
Q ss_conf             37875899970589799998568--9588999706776--7766740089996998999997469889999378858
Q T0558           103 LPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGI--ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQL  175 (294)
Q Consensus       103 ~~dg~~l~~~s~~~~~~~~~~~~--G~~~~~~~~~~~~--~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d~~g~~  175 (294)
                      .|||+.++.+......+-+....  +............  .....-.--+...|||++++.+..++  .++|..+..
T Consensus       126 L~DG~vlIiGG~~~~~~E~~P~~~~~~~~~~~~~L~~t~~~~~~nlYPf~~LlPdG~lFi~an~~s--~i~D~~t~~  200 (243)
T PF07250_consen  126 LPDGRVLIIGGRRNPTYEFFPPIGPGPGPVNLPFLADTNDTQPNNLYPFVHLLPDGNLFIFANNRS--IILDYNTNT  200 (243)
T ss_pred             CCCCCEEEEECCCCCCEEECCCCCCCCCCEECCHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCC--EEECCCCCE
T ss_conf             899989999488888310778876788725210202231367666572699858998999984774--887188995


No 28 
>PF03178 CPSF_A:  CPSF A subunit region;  InterPro: IPR004871 This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs . The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 3ei3_A 2b5m_A 3e0c_A 3ei4_A 2b5l_A 3ei1_A 2hye_A 3ei2_A.
Probab=96.56  E-value=0.018  Score=31.43  Aligned_cols=170  Identities=14%  Similarity=0.099  Sum_probs=88.5

Q ss_pred             CEEEEEECCCCEEEEEEECCCCCCCCEEEEEC-------CCCEEEEE-----------C-CEEEEEECCCC-----CEE-
Q ss_conf             86999988788299999449987311647907-------98399841-----------8-82899752677-----036-
Q T0558            33 NKIAIINKDTKEIVWEYPLEKGWECNSVAATK-------AGEILFSY-----------S-KGAKMITRDGR-----ELW-   87 (294)
Q Consensus        33 ~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~p-------dG~~l~s~-----------~-~~v~~~~~~~~-----~~~-   87 (294)
                      ..|.++|..+.+.+++++++....+.++....       .-.+|+.+           . +.++++.....     ++. 
T Consensus         2 s~i~lvd~~~~~~i~~~~l~~~E~~~s~~~~~l~~~~~~~~~~lvVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~L~~   81 (321)
T PF03178_consen    2 SCIRLVDPTTFEVIDSFELDENEHVTSMCSVQLDSSSTGKRPYLVVGTAFNYGEDPESRSGRIYVFEIIESPSTNRKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEE----EEEEE------SS-EEEE--EE--TTSSS-----EEEEEE---------EEE
T ss_pred             CEEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEEE
T ss_conf             19999928972599999989995455999999646666656799999422467887767569999999424445318999


Q ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-EEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEE
Q ss_conf             7723777631487873787589997058979999856895-889997067767766740089996998999997469889
Q T0558            88 NIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGE-VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEV  166 (294)
Q Consensus        88 ~~~~~~~~~v~~~~~~~dg~~l~~~s~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i  166 (294)
                      .........+.++... .| +++++.+ ..+.++.....+ ++..-.....    . .+.++..  -+++|++|.....+
T Consensus        82 i~~~~~~g~v~al~~~-~g-~ll~~~g-~~l~v~~l~~~~~l~~~~~~~~~----~-~i~~l~~--~~~~I~vgD~~~Sv  151 (321)
T PF03178_consen   82 IHETEVKGPVYALCSF-NG-RLLAAVG-NKLRVYDLGNKKELLRKAFYDLP----F-YITSLSV--FGNYILVGDAMKSV  151 (321)
T ss_dssp             EEEE-----EEEEEE------EEEEES-SEEEEEEEETTSEEEEEEEE-BS----S---SS-EE--E--EEEE--TSB-E
T ss_pred             EEEEECCCCCEEEHHC-CC-EEEEEEC-CEEEEEEECCCCCEEEEEEECCC----C-EEEEEEE--ECCEEEEEEHHHCE
T ss_conf             9999728766993262-99-8999989-99999993695311020334587----2-8999998--89999999925387


Q ss_pred             EEE--ECCCCEEEEE--E-CCCEEEEEEEECCCCEEEECCCCCEEEEEECC
Q ss_conf             999--3788588985--1-69734898873489689973589879999878
Q T0558           167 REI--APNGQLLNSV--K-LSGTPFSSAFLDNGDCLVACGDAHCFVQLNLE  212 (294)
Q Consensus       167 ~~~--d~~g~~~~~~--~-~~~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~  212 (294)
                      .++  +.+++.+-..  . ..-.+.++.+..+++.++++-..+++.++...
T Consensus       152 ~~~~y~~~~~~l~~iarD~~~~~vta~~~l~d~~~ii~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  152 SFLRYDEENNKLILIARDFQPRWVTAVEFLVDEDTIIVSDKFGNLFVLRYN  202 (321)
T ss_dssp             EEEEE-S----EEEEEEESS-B-EEEEEEE-ETTEEE-EETTSEE--EEE-
T ss_pred             EEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf             999994589759999834987546999873278779998699949999738


No 29 
>PF03022 MRJP:  Major royal jelly protein;  InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content , of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees  and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content .   Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees .; PDB: 2qe8_B.
Probab=96.55  E-value=0.019  Score=31.35  Aligned_cols=60  Identities=15%  Similarity=0.199  Sum_probs=43.9

Q ss_pred             CEEEEEECCCCEEEEEEECCCC-----CCCCEEEEEC-C-----CCEEEEE--CCEEEEEECCCCCEEEEECC
Q ss_conf             8699998878829999944998-----7311647907-9-----8399841--88289975267703677237
Q T0558            33 NKIAIINKDTKEIVWEYPLEKG-----WECNSVAATK-A-----GEILFSY--SKGAKMITRDGRELWNIAAP   92 (294)
Q Consensus        33 ~~i~~~d~~tg~~~w~~~~~~~-----~~~~~~~~~p-d-----G~~l~s~--~~~v~~~~~~~~~~~~~~~~   92 (294)
                      -+|.+||+.|++++.++.++..     .....+.+.. +     +..++++  ...+.++|...+..|+...+
T Consensus        34 pKLv~~Dl~t~~~v~~~~lp~~v~~~~S~l~dl~VD~~~~~~~~~~aYItD~~~~glIV~Dl~~g~swRv~~~  106 (287)
T PF03022_consen   34 PKLVAFDLKTNKVVRRYDLPADVAPPDSYLNDLRVDVRDGDCDEGFAYITDSGGPGLIVYDLATGRSWRVLHG  106 (287)
T ss_dssp             -EEEEEETTTTEEEEEEE--TTTS-TT----EEEEETTTT-----EEEEEE--SGEEEEEES----EEEE---
T ss_pred             CEEEEEECCCCCEEEEEECCCHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEECC
T ss_conf             7699999999978999989920135776325489968899732789999779888699998889958999178


No 30 
>PF00400 WD40:  WD domain, G-beta repeat;  InterPro: IPR001680   WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD-containing proteins have 4 to 16 repeating units, all of which are thought to form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. The underlying common function of all WD-repeat proteins is coordinating multi-protein complex assemblies, where the repeating units serve as a rigid scaffold for protein interactions. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase , .; PDB: 3fm0_A 2hes_X 1vyh_S 1p22_A 3dm0_A 3frx_C 1nex_D 2ovr_B 2ovp_B 2ovq_B ....
Probab=96.14  E-value=0.005  Score=35.51  Aligned_cols=38  Identities=8%  Similarity=0.133  Sum_probs=27.9

Q ss_pred             CEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             58899970677677667400899969989999974698899993
Q T0558           127 EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA  170 (294)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d  170 (294)
                      +++..+.      .|...++++.++|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~------~h~~~i~~v~~~~~~~~l~s~~~d~~i~iwd   39 (39)
T PF00400_consen    2 KCVQTFK------GHTSPITSVAFSPDGKFLASGSDDGTIRIWD   39 (39)
T ss_dssp             EEEEEEE------SSSSSEEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred             EEEEEEC------CCCCCEEEEEECCCCEEEEEECCCCEEEEEC
T ss_conf             1999987------8688409967324121126466899899989


No 31 
>PF04053 Coatomer_WDAD:  Coatomer WD associated region ;  InterPro: IPR006692   Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer . While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins . For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi . Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes . Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerize, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits.    This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region .   More information about these proteins can be found at Protein of the Month: Clathrin .; GO: 0005198 structural molecule activity, 0005515 protein binding, 0008565 protein transporter activity, 0006461 protein complex assembly, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat
Probab=95.78  E-value=0.043  Score=28.69  Aligned_cols=172  Identities=10%  Similarity=-0.001  Sum_probs=95.8

Q ss_pred             HHHCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEE-CCEEEE-EECCCCCEEEEEC
Q ss_conf             32001478885899974798699998878829999944998731164790798399841-882899-7526770367723
Q T0558            14 APFAQGSSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY-SKGAKM-ITRDGRELWNIAA   91 (294)
Q Consensus        14 ~~~~~~s~~~~~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~-~~~v~~-~~~~~~~~~~~~~   91 (294)
                      +...+.++.++.++++ +++...++........      ....+.+.+|.+++++.+.. +..+.+ .+......++...
T Consensus        35 p~~ls~nPngr~v~V~-g~gey~iyt~~~~r~k------~~g~g~~~vw~~~n~yAv~~~~~~I~i~knf~~~~~k~i~~  107 (444)
T PF04053_consen   35 PQSLSHNPNGRFVLVC-GDGEYIIYTALAWRNK------AFGSGLSFVWSSRNRYAVLEKNSTIKIFKNFKEETTKSIKL  107 (444)
T ss_pred             CEEEEECCCCCEEEEE-CCCEEEEEECCCCCCC------CCCCCEEEEEECCCCEEEEECCCEEEEEECCCCCCCEEECC
T ss_conf             7148999988889996-6998999982466655------56763179997771189997697599997578752307858


Q ss_pred             CC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             77-76314878737875899970589799998568958899970677677667400899969989999974698899993
Q T0558            92 PA-GCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA  170 (294)
Q Consensus        92 ~~-~~~v~~~~~~~dg~~l~~~s~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~~d~~i~~~d  170 (294)
                      +. ...++.      |..| ....+..+.+++..+++.+.+....        ++..+.++++|++++..+ +.++++++
T Consensus       108 ~~~~~~If~------G~LL-~~~~~~~i~~yDw~~~~~i~~I~v~--------~vk~V~Ws~~g~~Val~~-~~~i~il~  171 (444)
T PF04053_consen  108 PFSVEKIFG------GNLL-GVKSSDFICFYDWEQGKLIRRIDVS--------PVKNVIWSDDGELVALLT-KDSIYILK  171 (444)
T ss_pred             CCCCCEEEC------CEEE-EEECCCCEEEEEHHHCCEEEEEECC--------CCCEEEEECCCCEEEEEE-CCEEEEEE
T ss_conf             977172773------6199-9977986899884785477799648--------985799978866799987-77699998


Q ss_pred             CCCC-------------EEEEEEC-CCEEEEEEEECCCCEEEECCCCCEEEEEE
Q ss_conf             7885-------------8898516-97348988734896899735898799998
Q T0558           171 PNGQ-------------LLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLN  210 (294)
Q Consensus       171 ~~g~-------------~~~~~~~-~~~~~~~~~~~~g~~~v~~~~~~~i~~~d  210 (294)
                      .+-.             ....... ...+.+.....+  .++.++..+--++++
T Consensus       172 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~hLkYlv~  223 (444)
T PF04053_consen  172 YNLEAVEAEDDEEGIEDAFEVVHEINERIKSGAWDGD--VFIYTTSNHLKYLVN  223 (444)
T ss_pred             ECCCCCCCCCCCCCCHHHEEEEEEEEEEEEEEEEECC--EEEEECCCEEEEEEC
T ss_conf             2153344566555703303888774200556799767--999973632799948


No 32 
>PF01011 PQQ:  PQQ enzyme repeat family.;  InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases , . A number of bacterial quinoproteins belong to this family.   Enzymes in this group have repeats of a beta propeller.; GO: 0006118 electron transport; PDB: 1kb0_A 1flg_B 1g72_C 4aah_C 2ad6_C 2ad7_A 2ad8_C 2d0v_I 1h4j_C 1h4i_A ....
Probab=95.78  E-value=0.0073  Score=34.32  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             EEEEECCCCEEEEEECCCCEEEEEEECCCCCC
Q ss_conf             89997479869999887882999994499873
Q T0558            25 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWE   56 (294)
Q Consensus        25 ~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~~~   56 (294)
                      .++.++.++.++++|.+|||++|+++.+....
T Consensus         2 ~v~~~~~~g~l~AlDa~TG~~~W~~~~~~~~~   33 (38)
T PF01011_consen    2 RVYVGSADGHLYALDAETGKILWRFDTGGPVW   33 (38)
T ss_dssp             EEEEESTTTEEEEEESTE-EEEEEEESSTTTC
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf             89996889999999889998999778899975


No 33 
>PF02897 Peptidase_S9_N:  Prolyl oligopeptidase, N-terminal beta-propeller domain;  InterPro: IPR004106   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs.    Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol . The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides .; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2bkl_B 1yr2_A 3ddu_A 1qfm_A 1e5t_A 1vz3_A 1qfs_A 1vz2_A 1h2z_A 1o6f_A ....
Probab=95.42  E-value=0.057  Score=27.79  Aligned_cols=54  Identities=11%  Similarity=0.102  Sum_probs=21.0

Q ss_pred             EEEEECCCCEEEEE---C----CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             64790798399841---8----8289975267703677237776314878737875899970
Q T0558            59 SVAATKAGEILFSY---S----KGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWC  113 (294)
Q Consensus        59 ~~~~~pdG~~l~s~---~----~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~dg~~l~~~s  113 (294)
                      ...++|||++++.+   +    ..+++.+..+++........ .....+.|.+|++.++...
T Consensus       129 ~~~~Spdg~~~a~~~~~~G~e~~~l~i~dl~tg~~~~d~i~~-~~~~~i~W~~d~~~~~Y~~  189 (415)
T PF02897_consen  129 GFSVSPDGKRLAYSLDPGGSEWYTLRIFDLETGEFLPDVIEG-PKFSSIAWSPDGKGFFYTR  189 (415)
T ss_dssp             EEEE-----EEEEEEEETT-SEEEEEEEEC---EEECEEEEE-EESEEEEE-TT--EEEEEE
T ss_pred             EEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC-CCCCEEEEEECCCEEEEEE
T ss_conf             367999889899998799982599999999999898864336-6432589980898999998


No 34 
>PF00400 WD40:  WD domain, G-beta repeat;  InterPro: IPR001680   WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD-containing proteins have 4 to 16 repeating units, all of which are thought to form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. The underlying common function of all WD-repeat proteins is coordinating multi-protein complex assemblies, where the repeating units serve as a rigid scaffold for protein interactions. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase , .; PDB: 3fm0_A 2hes_X 1vyh_S 1p22_A 3dm0_A 3frx_C 1nex_D 2ovr_B 2ovp_B 2ovq_B ....
Probab=94.33  E-value=0.039  Score=28.99  Aligned_cols=36  Identities=11%  Similarity=0.049  Sum_probs=21.1

Q ss_pred             EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             677237776314878737875899970589799998
Q T0558            87 WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV  122 (294)
Q Consensus        87 ~~~~~~~~~~v~~~~~~~dg~~l~~~s~~~~~~~~~  122 (294)
                      .+...+|...+.++.++|+++++++++.|+.+.+|+
T Consensus         4 ~~~~~~h~~~i~~v~~~~~~~~l~s~~~d~~i~iwd   39 (39)
T PF00400_consen    4 VQTFKGHTSPITSVAFSPDGKFLASGSDDGTIRIWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred             EEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEEC
T ss_conf             999878688409967324121126466899899989


No 35 
>PF05694 SBP56:  56kDa selenium binding protein (SBP56);  InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport . The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport .; GO: 0008430 selenium binding; PDB: 2ece_A.
Probab=91.53  E-value=0.26  Score=22.99  Aligned_cols=145  Identities=14%  Similarity=0.068  Sum_probs=73.1

Q ss_pred             CCEEEEECCCCEEEEEECCC----CEEEEEEEC----C--CCCCCCEEEEECCCCEEEEE--------CCEEEEEECCCC
Q ss_conf             85899974798699998878----829999944----9--98731164790798399841--------882899752677
Q T0558            23 QHLLVGGSGWNKIAIINKDT----KEIVWEYPL----E--KGWECNSVAATKAGEILFSY--------SKGAKMITRDGR   84 (294)
Q Consensus        23 ~~~l~~gs~~~~i~~~d~~t----g~~~w~~~~----~--~~~~~~~~~~~pdG~~l~s~--------~~~v~~~~~~~~   84 (294)
                      ..+++.|-..++|+++|..+    -++.....-    .  .-...+.+.-.|+|.+++|.        -+++.++|.++-
T Consensus        88 r~Li~PgL~SsrIyiiDt~~dPr~P~l~KvIep~ev~~k~g~s~PHT~hclp~G~i~IS~LGd~~G~g~Gg~~llD~~tF  167 (461)
T PF05694_consen   88 RYLIVPGLRSSRIYIIDTKTDPRKPKLHKVIEPEEVFKKTGYSRPHTVHCLPDGNIMISALGDADGNGPGGFVLLDHDTF  167 (461)
T ss_dssp             -EEEE----S--EEEEE--S-TTS-EEEEEE-HHHHHHH----SEEEEE------EEEEE------------EEE-TTT-
T ss_pred             CEEEEECCCCCCEEEEECCCCCCCCCEEEECCHHHHHHCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCCCEEEECCCCC
T ss_conf             63983024678389997989988985265427889754059777740014798648999445788988874899728752


Q ss_pred             CE---EEEECCCCCCEEEEEECCCCCEEEEEE--------------------CCCCEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf             03---677237776314878737875899970--------------------5897999985689588999706776776
Q T0558            85 EL---WNIAAPAGCEMQTARILPDGNALVAWC--------------------GHPSTILEVNMKGEVLSKTEFETGIERP  141 (294)
Q Consensus        85 ~~---~~~~~~~~~~v~~~~~~~dg~~l~~~s--------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~  141 (294)
                      ++   |....+........-+.|.-+++++..                    ....+.+|+..+.+.++++.+..... .
T Consensus       168 ev~G~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G~~~~~l~~~~YG~~lh~Wd~~~r~~~QtiDLg~~g~-~  246 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPNMFEDGFNPEDLEAGKYGHRLHVWDWSTRKHIQTIDLGEEGQ-M  246 (461)
T ss_dssp             -B-----SB---------EEEETTTTEEEE-B---HHHH-----TTTHHHH----EEEEEETTTTEEEEEEE----EE-E
T ss_pred             EECCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHCCCCHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCC-C
T ss_conf             365534668888778987776168885997045784675357886786446566368998888884447873486885-1


Q ss_pred             CCCCCEEEECCCC--CE-EEEEECCCEEEEEEC
Q ss_conf             6740089996998--99-999746988999937
Q T0558           142 HAQFRQINKNKKG--NY-LVPLFATSEVREIAP  171 (294)
Q Consensus       142 ~~~~~~~~~s~dG--~~-i~~g~~d~~i~~~d~  171 (294)
                      +   --+.|..|-  .+ ++.+.-.+.|..|-.
T Consensus       247 p---LEvRflHdP~~~~gFvg~aLsssIw~~~~  276 (461)
T PF05694_consen  247 P---LEVRFLHDPDKNYGFVGCALSSSIWRWYK  276 (461)
T ss_dssp             E---EEE---SSTT-----EEEE--EEEEEEEE
T ss_pred             E---EEEEECCCCCCCCCEEEEECCEEEEEEEE
T ss_conf             4---88872689976631785641105999997


No 36 
>PF10168 Nup88:  Nuclear pore component
Probab=89.18  E-value=0.4  Score=21.61  Aligned_cols=107  Identities=12%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             CEEEEECCCCEEEEEECCCCEEEEEEEC----------------------CCCCCCCEEEEECCCCEEEE-ECCEEEEEE
Q ss_conf             5899974798699998878829999944----------------------99873116479079839984-188289975
Q T0558            24 HLLVGGSGWNKIAIINKDTKEIVWEYPL----------------------EKGWECNSVAATKAGEILFS-YSKGAKMIT   80 (294)
Q Consensus        24 ~~l~~gs~~~~i~~~d~~tg~~~w~~~~----------------------~~~~~~~~~~~~pdG~~l~s-~~~~v~~~~   80 (294)
                      +-|+.+. |+.+++||....-+. ....                      ....++..+.++|+|..++. |..++.+..
T Consensus        34 ~nL~~~~-d~~L~~W~~~e~~l~-~~n~r~~~~~~~~~~~~~~q~Ll~s~~~~feV~~I~vs~tG~~lAL~G~~gv~Il~  111 (717)
T PF10168_consen   34 RNLLDCK-DGDLFAWDSSESCLL-VVNLRDSESEATKPAKVKYQTLLPSNPPLFEVDRISVSPTGSLLALAGPRGVCILE  111 (717)
T ss_pred             CCEEEEE-CCEEEEEECCCCEEE-EEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf             3117975-898999946566899-98703456555776667516882478988478899988988779997488469999


Q ss_pred             CC-----------CC---CEEEE-------ECCCCCCEEEEEECCC---CCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             26-----------77---03677-------2377763148787378---758999705897999985689588999
Q T0558            81 RD-----------GR---ELWNI-------AAPAGCEMQTARILPD---GNALVAWCGHPSTILEVNMKGEVLSKT  132 (294)
Q Consensus        81 ~~-----------~~---~~~~~-------~~~~~~~v~~~~~~~d---g~~l~~~s~~~~~~~~~~~~G~~~~~~  132 (294)
                      ..           ++   .+..+       .......+..+.|+|.   +..|++-..|+.+..++..+..-.|+.
T Consensus       112 LPrr~g~~g~~e~g~~~i~Crt~~v~~~lf~~~~~l~v~Qv~WHP~s~~ds~LvVLtsdn~iR~Yd~~~~~~~~qV  187 (717)
T PF10168_consen  112 LPRRWGKDGYFEDGKDEINCRTYPVDSRLFTSNPSLEVLQVRWHPWSPSDSHLVVLTSDNTIREYDLSKPRHPWQV  187 (717)
T ss_pred             ECCCCCCCCCCCCCCCCEEEEEEECHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCEE
T ss_conf             0543487653146886113677971286615799725898875578889974999936977998714887767265


No 37 
>PF12234 Rav1p_C:  RAVE protein 1 C terminal
Probab=88.58  E-value=0.44  Score=21.33  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=18.5

Q ss_pred             EEEEEECCCCCEEEEE-CCCCCCEEEEEE--CCCCCEEEEEECCCCEEE
Q ss_conf             2899752677036772-377763148787--378758999705897999
Q T0558            75 GAKMITRDGRELWNIA-APAGCEMQTARI--LPDGNALVAWCGHPSTIL  120 (294)
Q Consensus        75 ~v~~~~~~~~~~~~~~-~~~~~~v~~~~~--~~dg~~l~~~s~~~~~~~  120 (294)
                      ...+||..+..+.... -.....+..+.|  +|+++.+++.+....+.+
T Consensus        52 ~LtIwd~~~~~lE~~e~f~~~~~I~dLDWtst~~~qsiLaVGf~~~V~L  100 (630)
T PF12234_consen   52 RLTIWDTRGSVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL  100 (630)
T ss_pred             EEEEEECCCCEEEEHHHCCCCCCEECCCCCCCCCCCEEEEEECCCEEEE
T ss_conf             7999973751121165505788532352332799877999972757899


No 38 
>PF07569 Hira:  TUP1-like enhancer of split;  InterPro: IPR011494   The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription, 0005634 nucleus
Probab=84.02  E-value=0.73  Score=19.70  Aligned_cols=26  Identities=12%  Similarity=-0.070  Sum_probs=12.4

Q ss_pred             CCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf             37875899970589799998568958
Q T0558           103 LPDGNALVAWCGHPSTILEVNMKGEV  128 (294)
Q Consensus       103 ~~dg~~l~~~s~~~~~~~~~~~~G~~  128 (294)
                      ..++.++++.+.++..++|+..++++
T Consensus        19 ~~~~~~Ll~lT~~G~l~vWnl~~~k~   44 (220)
T PF07569_consen   19 ECNGSYLLALTSSGLLYVWNLKTKKA   44 (220)
T ss_pred             EECCCEEEEEECCCEEEEEECCCCEE
T ss_conf             96897899992687799998888813


No 39 
>PF11768 DUF3312:  Protein of unknown function (DUF3312)
Probab=83.25  E-value=0.78  Score=19.48  Aligned_cols=70  Identities=7%  Similarity=0.036  Sum_probs=39.1

Q ss_pred             CCEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEECCCC
Q ss_conf             0089996998999997469889999378858898516973489887348968997358987999987898
Q T0558           145 FRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN  214 (294)
Q Consensus       145 ~~~~~~s~dG~~i~~g~~d~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~~g  214 (294)
                      +.+-+++|+-.-++-|+.|+++.+||..-+...-.+..-.|.-+..+|+|..++.++..+.+-.+|..=+
T Consensus       261 v~~~a~np~edKL~LGc~D~slvLyD~~r~vT~l~qa~~~P~~i~WHp~~ai~~Van~~gelQ~FDiALs  330 (544)
T PF11768_consen  261 VCCCARNPDEDKLILGCEDGSLVLYDEHRGVTLLTQAAVPPTLIAWHPDGAIFLVANERGELQCFDIALS  330 (544)
T ss_pred             EEEECCCCCHHHEEEECCCCCEEEEECCCCCEEEEECCCCCCCEEECCCCCEEEEECCCCEEEEEEEEHH
T ss_conf             0351589515643761367868988546660464204447653257789858999668743898752412


No 40 
>PF10647 Gmad1:  Lipoprotein LpqB beta-propeller domain
Probab=76.32  E-value=1.3  Score=17.95  Aligned_cols=144  Identities=11%  Similarity=0.070  Sum_probs=75.8

Q ss_pred             CCCCEEEEECCCCEEEE-E--CCEEEEEECCC-CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE-ECCCCCEE
Q ss_conf             73116479079839984-1--88289975267-70367723777631487873787589997058979999-85689588
Q T0558            55 WECNSVAATKAGEILFS-Y--SKGAKMITRDG-RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILE-VNMKGEVL  129 (294)
Q Consensus        55 ~~~~~~~~~pdG~~l~s-~--~~~v~~~~~~~-~~~~~~~~~~~~~v~~~~~~~dg~~l~~~s~~~~~~~~-~~~~G~~~  129 (294)
                      ..+.++++++||..++. .  ++...+|.... +.......+  ......+|.+++....+...+....+. +..+|+..
T Consensus        24 ~~~~s~avS~~g~~~A~v~~~~~~~~L~v~~~g~~~~~~~~g--~~lt~PS~~~~~~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YTVTSAAVSRDGQRVAAVSEPDGRQSLYVGPPGGPARQVLTG--GSLTRPSWDRDGWVWTVDDGDDVVRVIRDDADGTGS  101 (253)
T ss_pred             CCCCCEEECCCCCEEEEEEECCCCCEEEEECCCCCCEEEECC--CCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCE
T ss_conf             653213887899759999954898589996289853051047--742464076899889996599725888744788610


Q ss_pred             EEEECCCCCCCCCCCCCEEEECCCCCEEEEEE---CCCEEEEEE----CCC-CEEEEE------ECCCEEEEEEEECCCC
Q ss_conf             99970677677667400899969989999974---698899993----788-588985------1697348988734896
Q T0558           130 SKTEFETGIERPHAQFRQINKNKKGNYLVPLF---ATSEVREIA----PNG-QLLNSV------KLSGTPFSSAFLDNGD  195 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~g~---~d~~i~~~d----~~g-~~~~~~------~~~~~~~~~~~~~~g~  195 (294)
                      .. ........  ..+..+..++||..++.-.   ..+.+++--    ..| ......      .....+.++....++.
T Consensus       102 ~~-~v~~~~~~--~~I~~lrvS~DG~RvAvv~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~l~W~~~~~  178 (253)
T PF10647_consen  102 PV-EVDWPALR--GRITSLRVSPDGVRVAVVVERGGGGQVYVAGVVRDGDGVPRRLTAPRRLGPGLGEDVTSLAWSSDST  178 (253)
T ss_pred             EE-EECCCCCC--CCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCEECCCEEECCCCCCCCEEEEEECCCE
T ss_conf             17-80255567--5057898579985899999878998699999970899865153133662356567402556726987


Q ss_pred             EEEECCCC
Q ss_conf             89973589
Q T0558           196 CLVACGDA  203 (294)
Q Consensus       196 ~~v~~~~~  203 (294)
                      +++.+...
T Consensus       179 L~V~~~~~  186 (253)
T PF10647_consen  179 LVVLTSSP  186 (253)
T ss_pred             EEEEECCC
T ss_conf             99994589


No 41 
>PF05787 DUF839:  Bacterial protein of unknown function (DUF839);  InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=75.45  E-value=1.3  Score=17.79  Aligned_cols=13  Identities=31%  Similarity=0.342  Sum_probs=6.6

Q ss_pred             CEEECCCCCEEEE
Q ss_conf             3489389989998
Q T0558           235 QLFPLQNGGLYIC  247 (294)
Q Consensus       235 ~~~~~~~G~i~i~  247 (294)
                      ++.+.++|++.|.
T Consensus       440 Nl~fd~~G~LwI~  452 (524)
T PF05787_consen  440 NLAFDPDGNLWIQ  452 (524)
T ss_pred             CCEECCCCCEEEE
T ss_conf             5149799999999


No 42 
>PF02333 Phytase:  Phytase;  InterPro: IPR003431   Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to have a six- bladed propeller folding architecture ().; PDB: 2poo_A 1cvm_A 1qlg_A 1poo_A 1h6l_A.
Probab=75.44  E-value=1.3  Score=17.79  Aligned_cols=191  Identities=15%  Similarity=0.198  Sum_probs=97.1

Q ss_pred             CCCCCC-EEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEE----ECCCCE---EEEEC-----CEEEEEECCC--
Q ss_conf             478885-89997479869999887882999994499873116479----079839---98418-----8289975267--
Q T0558            19 GSSPQH-LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAA----TKAGEI---LFSYS-----KGAKMITRDG--   83 (294)
Q Consensus        19 ~s~~~~-~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~----~pdG~~---l~s~~-----~~v~~~~~~~--   83 (294)
                      +..|.+ +++...+.+-+.++|+ .|+.+..++.+.   .+.+.+    .-+|+.   .+.++     ..+.+|..+.  
T Consensus        63 ~~~p~~S~ii~T~K~~GL~vydl-~G~~~~~~~~g~---~nnVDvrygf~L~g~~vDlAvaS~R~~g~ntL~~f~id~~~  138 (381)
T PF02333_consen   63 PTDPSKSLIIGTDKKGGLYVYDL-DGKQLQFLPAGR---LNNVDVRYGFPLGGRTVDLAVASDRSDGRNTLRLFRIDPDN  138 (381)
T ss_dssp             SS-GGG-EEEEEETTE-EEEEE-----EEEE--------EEEEEEEEEEE----EEEEEEEEE------EEEEEEE----
T ss_pred             CCCCCCCEEEEECCCCCEEEECC-CCCEEEECCCCC---CCEEEEECCEECCCEEEEEEEEECCCCCCCEEEEEEECCCC
T ss_conf             99956056999717788699878-986967626787---31556561601288068699993466778648999646866


Q ss_pred             CCEEEEECC------CCCCEEEEEE--CC-CCCEEEEEECCCCEE----EEECCCC----CEEEEEECCCCCCCCCCCCC
Q ss_conf             703677237------7763148787--37-875899970589799----9985689----58899970677677667400
Q T0558            84 RELWNIAAP------AGCEMQTARI--LP-DGNALVAWCGHPSTI----LEVNMKG----EVLSKTEFETGIERPHAQFR  146 (294)
Q Consensus        84 ~~~~~~~~~------~~~~v~~~~~--~~-dg~~l~~~s~~~~~~----~~~~~~G----~~~~~~~~~~~~~~~~~~~~  146 (294)
                      +.+.....+      ....+..++.  +| +|.+.+..++..+.+    +.+..+|    +++++|...++.++      
T Consensus       139 g~L~~i~~~~~p~~t~~~e~YGlclY~s~~~g~~yafv~~k~G~~~Qy~L~~~~~G~i~~~lVR~f~~~sQ~EG------  212 (381)
T PF02333_consen  139 GELTDIGDPNQPIATDLREPYGLCLYRSPSTGKLYAFVNRKDGEVEQYELSDDGNGTITATLVREFKLGSQPEG------  212 (381)
T ss_dssp             --EEE-C-SSS-EE-SSSS----EEEE-S----EEEEE------EEEEEEEE-----EE-EEEEEE--SS-B--------
T ss_pred             CCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCEE------
T ss_conf             65104467775567886643489986638889789999888745999999748898583578799537986028------


Q ss_pred             EEEECCCCCEEEEEECCCEEEEEECC--C----CEEEEEE---CCCEEEEEEEE--CCC-CEEEECCCC-CEEEEEECCC
Q ss_conf             89996998999997469889999378--8----5889851---69734898873--489-689973589-8799998789
Q T0558           147 QINKNKKGNYLVPLFATSEVREIAPN--G----QLLNSVK---LSGTPFSSAFL--DNG-DCLVACGDA-HCFVQLNLES  213 (294)
Q Consensus       147 ~~~~s~dG~~i~~g~~d~~i~~~d~~--g----~~~~~~~---~~~~~~~~~~~--~~g-~~~v~~~~~-~~i~~~d~~~  213 (294)
                       +.....-.+|+.+..+.-|..|+.+  +    ..+....   ....+-.+.+.  .++ .++++++.+ +...+++.+.
T Consensus       213 -CVVDde~g~LYvgEEd~GIW~y~AeP~~~~~~~~i~~~~g~~l~aDvEGlaiy~~~~g~gYLivSsQG~~sf~VY~r~~  291 (381)
T PF02333_consen  213 -CVVDDETGYLYVGEEDVGIWRYDAEPEGGSTGTLIDAADGDGLVADVEGLAIYYGGDGTGYLIVSSQGNNSFAVYDREG  291 (381)
T ss_dssp             --EE-S----EEEEETTTEEEEE-SS--------EEEE-------S-B---EE---------EEEEE----EEEEE----
T ss_pred             -EEEECCCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf             -9995677978884377669998768889987448762146776457630388863799718999768897489986678


Q ss_pred             C-EEEEEE
Q ss_conf             8-599984
Q T0558           214 N-RIVRRV  220 (294)
Q Consensus       214 g-~~~~~~  220 (294)
                      . +.+-++
T Consensus       292 ~~~~~g~F  299 (381)
T PF02333_consen  292 PNAYVGSF  299 (381)
T ss_dssp             ---EEEEE
T ss_pred             CCCCCCEE
T ss_conf             97653438


No 43 
>PF03088 Str_synth:  Strictosidine synthase;  InterPro: IPR004141 Strictosidine synthase is a key enzyme in alkaloid biosynthesis. It catalyses the condensation of tryptamine with secologanin to form strictosidine.; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2vaq_A 2fp8_B 2v91_A 2fpc_B 2fp9_A 2fpb_B.
Probab=74.30  E-value=1.4  Score=17.59  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=13.9

Q ss_pred             CCCEEEEEECCCCEEEEEE-CCCEEEEEEEECCCCE
Q ss_conf             6988999937885889851-6973489887348968
Q T0558           162 ATSEVREIAPNGQLLNSVK-LSGTPFSSAFLDNGDC  196 (294)
Q Consensus       162 ~d~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~g~~  196 (294)
                      ..|++..||++++...... .-..|..+++++|+..
T Consensus        35 ~tGRLl~YDp~t~~~~VLl~gL~fpNGvals~D~~~   70 (89)
T PF03088_consen   35 PTGRLLKYDPRTKETTVLLDGLYFPNGVALSKDGSF   70 (89)
T ss_dssp             ----EEEEETTTTEEEEEE-S-S-----EE-TTSSE
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCE
T ss_conf             963189981899918996008865764799899999


No 44 
>PF08194 DIM:  DIM protein;  InterPro: IPR013172   Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila. This family includes DIMs 1 to 4 that have masses below 5 kDa .
Probab=71.10  E-value=0.91  Score=19.00  Aligned_cols=30  Identities=33%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             CHHHHHHHHHHHHH-HHCCCCCCCCEEEEEC
Q ss_conf             90345568887663-2001478885899974
Q T0558             1 MKNFILLVALFLVA-PFAQGSSPQHLLVGGS   30 (294)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~s~~~~~l~~gs   30 (294)
                      ||++.+..++++.+ ..++..+|+++++.|.
T Consensus         1 MK~lsla~~l~lLal~~a~~~~pG~ViING~   31 (36)
T PF08194_consen    1 MKCLSLAFALGLLALAAAVPATPGNVIINGD   31 (36)
T ss_pred             CCEEHHHHHHHHHHHHHCCCCCCCEEEECCE
T ss_conf             9240999999999998506689986899856


No 45 
>PF00780 CNH:  CNH domain;  InterPro: IPR001180   Based on sequence similarities a domain of homology has been identified in the following proteins :  Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1.    This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins . It acts as a regulatory domain and could be involved in macromolecular interactions , .; GO: 0005083 small GTPase regulator activity
Probab=66.31  E-value=2.1  Score=16.40  Aligned_cols=227  Identities=11%  Similarity=0.039  Sum_probs=106.2

Q ss_pred             CCCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEE-EEECCEEEEEECCC---CC-EEE-----
Q ss_conf             478885899974798699998878829999944998731164790798399-84188289975267---70-367-----
Q T0558            19 GSSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEIL-FSYSKGAKMITRDG---RE-LWN-----   88 (294)
Q Consensus        19 ~s~~~~~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l-~s~~~~v~~~~~~~---~~-~~~-----   88 (294)
                      +...++.|+.|+.+| |++++. .....|..- .+-..+..+...++-+.+ +-.|+.++.++...   .. .+.     
T Consensus         3 ~~~~~~~llvGt~~G-l~~~~~-~~~~~~~~~-~~~~~V~qi~vi~~~~~llvLsd~~L~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    3 PDTGGQKLLVGTEEG-LYLYDI-SDPNRPRKI-LKLFSVTQIEVIEELNLLLVLSDKQLYVYDLSSLEPRSLSSPLSKSK   79 (275)
T ss_pred             CCCCCCEEEEEECCC-EEEEEE-CCCCCCCEE-CCCCCEEEEEEECCCCEEEEEECCCEEEEECHHHCCCCCCCCCCCCC
T ss_conf             244899999998999-899995-365662103-35442899999400699999919928999908954433565432100


Q ss_pred             -----EECCCCCCEEEEE--ECCCCCEEEEEECCCCEEEE--ECCCC---CEEEEEECCCCCCCCCCCCCEEEECCCCCE
Q ss_conf             -----7237776314878--73787589997058979999--85689---588999706776776674008999699899
Q T0558            89 -----IAAPAGCEMQTAR--ILPDGNALVAWCGHPSTILE--VNMKG---EVLSKTEFETGIERPHAQFRQINKNKKGNY  156 (294)
Q Consensus        89 -----~~~~~~~~v~~~~--~~~dg~~l~~~s~~~~~~~~--~~~~G---~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~  156 (294)
                           ........+...+  -..++...++.+...++.+.  ....+   +...++..+       +.+..+.+.  +..
T Consensus        80 ~~~~~~~i~~~k~~~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~~~~~~kei~~~-------~~~~~i~~~--~~~  150 (275)
T PF00780_consen   80 SDNQPQKIPKTKGCSFFAVVGGHSGSRYLCVAVKKKILIYEWKDPLNKFVKLFKEISLP-------DPPKSIAWF--NNS  150 (275)
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCEEEEEEEEC-------CCCEEEEEE--CCE
T ss_conf             12222123455661799842676883699999999999999957877411041499947-------722798998--999


Q ss_pred             EEEEECCCEEEEEECC-CCEEEEEECC------------CEEEEEEEECCCCEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             9997469889999378-8588985169------------73489887348968997358987999987898599984488
Q T0558           157 LVPLFATSEVREIAPN-GQLLNSVKLS------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN  223 (294)
Q Consensus       157 i~~g~~d~~i~~~d~~-g~~~~~~~~~------------~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~~g~~~~~~~~~  223 (294)
                      +..|.. ....++|.. +...+-....            ..|..+...+++.+++..  +....++|. .|+..+     
T Consensus       151 icvg~~-~~f~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~l~~~e~Ll~~--~~~g~fvn~-~G~~~r-----  221 (275)
T PF00780_consen  151 ICVGTS-KGFEIVDLDTGSPSSLLDLDDSSFSFFSPSESLKPVGIFQLSDDEFLLCY--DNFGVFVNS-NGKPSR-----  221 (275)
T ss_pred             EEEEEC-CEEEEEECCCCCCCEEECCCCCCCCHHCCCCCCCCCEEEEECCCCEEEEE--CCEEEEECC-CCCCCC-----
T ss_conf             999989-84899989989840430667754210013557897379998999799996--744999918-998146-----


Q ss_pred             CCCCEEECCCCCEEECCCCCEEEEECCCCEEECCCCCCCEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             7641141134534893899899980467714302477756999908998999983588537888
Q T0558           224 DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIS  287 (294)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~G~i~i~~~~~~~~~~~~~~~~~~~~i~~~G~~vW~~~~~~~~~~i~  287 (294)
                         ...+.|.                 . ......-..+.++.+.+++-.||++.....++.+.
T Consensus       222 ---~~~i~w~-----------------~-~p~~v~~~~pyl~~~~~~~ieV~~i~~~~lvQ~i~  264 (275)
T PF00780_consen  222 ---KSTIKWS-----------------G-PPQSVAYSYPYLLAFHPNGIEVRSIETGELVQTIN  264 (275)
T ss_pred             ---CEEEECC-----------------C-HHCEEEEECCEEEEEECCCEEEEECCCCCEEEEEE
T ss_conf             ---6189888-----------------8-10299998999999969939999987993899998


No 46 
>PF00879 Defensin_propep:  Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.;  InterPro: IPR002366   Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses , containing three pairs of intramolecular disulphide bonds . On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes.     Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form 'channel-like' pores; others might bind to and cover the microbial membrane in a 'carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles  and appears to be cleaved by trypsin on activation.  ; GO: 0006952 defense response
Probab=64.47  E-value=1.4  Score=17.75  Aligned_cols=24  Identities=42%  Similarity=0.548  Sum_probs=21.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             903455688876632001478885
Q T0558             1 MKNFILLVALFLVAPFAQGSSPQH   24 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~~~   24 (294)
                      ||-+.|+.+++|+|..+|..+.+.
T Consensus         1 MrTl~LLaAlLllALqaQAe~~q~   24 (52)
T PF00879_consen    1 MRTLVLLAALLLLALQAQAEPLQE   24 (52)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             905999999999999975267654


No 47 
>PF09792 But2:  Ubiquitin 3 binding protein But2
Probab=63.86  E-value=2.3  Score=16.08  Aligned_cols=83  Identities=20%  Similarity=0.187  Sum_probs=34.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCC---CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCEEE
Q ss_conf             903455688876632001478---88589997479869999887882999994499873116479079839984188289
Q T0558             1 MKNFILLVALFLVAPFAQGSS---PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAK   77 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~---~~~~l~~gs~~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~~~~v~   77 (294)
                      ||||.-+.++-..|..+....   --++.++|...+.|.-+|.  |+.    .++++.......+..||.+-  ++.+..
T Consensus         1 mk~~~~~~a~a~~a~al~~r~~~~~f~l~asGg~sg~i~~l~~--~~~----rv~g~~~~~~F~i~~dG~lt--d~~g~~   72 (446)
T PF09792_consen    1 MKYFASLAALAAGANALVKRDDNCCFHLTASGGDSGTIGQLDD--GQN----RVGGSLPNGTFCINSDGSLT--DSNGRG   72 (446)
T ss_pred             CCHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCCCCEEECCC--CCC----CCCCCCCCEEEEECCCCCEE--ECCCCE
T ss_conf             9117889987641313211588756988843787764664158--764----32587786389982898578--689776


Q ss_pred             EEECCCCCEEEEEC
Q ss_conf             97526770367723
Q T0558            78 MITRDGRELWNIAA   91 (294)
Q Consensus        78 ~~~~~~~~~~~~~~   91 (294)
                      .+...+..+.+...
T Consensus        73 ~i~~~~t~qfq~D~   86 (446)
T PF09792_consen   73 CILTPGTTQFQCDA   86 (446)
T ss_pred             EEECCCCEEEEECC
T ss_conf             99679965887368


No 48 
>PF10566 Glyco_hydro_97:  Glycoside hydrolase 97  ; PDB: 2jkp_A 2zq0_A 2jke_B 2d73_B 2jka_B.
Probab=63.78  E-value=2.3  Score=16.07  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             CHHHHH-HHHHHHHHHHCCCCCCCCEEEEECCCCEEEE-EECCCCEEEEEEECC
Q ss_conf             903455-6888766320014788858999747986999-988788299999449
Q T0558             1 MKNFIL-LVALFLVAPFAQGSSPQHLLVGGSGWNKIAI-INKDTKEIVWEYPLE   52 (294)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~~~s~~~~~l~~gs~~~~i~~-~d~~tg~~~w~~~~~   52 (294)
                      ||...| ++++++.+..++..+ .+.....|-|++|.+ +....|++.++....
T Consensus         1 MKk~~i~~l~~~l~~~~~~~~~-~~~~~v~SPdG~l~v~v~~~~g~~~Y~v~~~   53 (643)
T PF10566_consen    1 MKKLIIILLALLLLLSASSSAA-AKNYTVSSPDGKLKVTVSLDDGQPTYSVSYN   53 (643)
T ss_dssp             --------------------------EEEE-TTSSEEEEEEE----EEEEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCEEEEEEECCCCEEEEEEEC
T ss_conf             9437999999999987411201-4733868979888999996899289999999


No 49 
>PF01436 NHL:  NHL repeat;  InterPro: IPR001258   The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C-terminus alpha-amidation of biological peptides . In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators . The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller , .    The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; PDB: 1rwl_A 1rwi_B 1q7f_A.
Probab=58.95  E-value=2.8  Score=15.49  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=8.8

Q ss_pred             EEEEEEECCCCEEEECCCCCEE
Q ss_conf             4898873489689973589879
Q T0558           185 PFSSAFLDNGDCLVACGDAHCF  206 (294)
Q Consensus       185 ~~~~~~~~~g~~~v~~~~~~~i  206 (294)
                      |.+++..++|+.+++....++|
T Consensus         4 P~giav~~~g~i~VaD~~n~rV   25 (28)
T PF01436_consen    4 PHGIAVDPDGNIYVADSGNHRV   25 (28)
T ss_dssp             BEEEEE-TTSEEEEEETTTTEE
T ss_pred             CCEEEECCCCCEEEEECCCCEE
T ss_conf             6599995999899998999999


No 50 
>PF05777 Acp26Ab:  Drosophila accessory gland-specific peptide 26Ab (Acp26Ab);  InterPro: IPR008392 This family consists of accessory gland-specific 26Ab peptides or male accessory gland secretory protein 355B from different Drosophila species. Drosophila males, like males of most other insects, transfer a group of specific proteins (Acp26Ab and Acp26Aa in Drosophila) to the females during mating. These proteins are produced primarily in the accessory gland and are likely to influence the female's reproduction .; GO: 0007617 mating behavior, 0005576 extracellular region
Probab=55.20  E-value=3.1  Score=15.17  Aligned_cols=28  Identities=14%  Similarity=0.144  Sum_probs=19.0

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             90345568887663200147888589997
Q T0558             1 MKNFILLVALFLVAPFAQGSSPQHLLVGG   29 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g   29 (294)
                      |.||+++|||+-||..- .|.+.-++-+-
T Consensus         1 mnyf~~lcif~cicl~~-~sdAaPyisVq   28 (90)
T PF05777_consen    1 MNYFVPLCIFSCICLWQ-LSDAAPYISVQ   28 (90)
T ss_pred             CCEEEHHHHHHHHHHHH-HCCCCCEEEEE
T ss_conf             96130259989889986-04678637886


No 51 
>PF02261 Asp_decarbox:  Aspartate decarboxylase;  InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1vc3_A 2eeo_B 2c45_C 1uhd_A 1uhe_A 1aw8_D 1pqf_B 1pyq_B 1pt0_A 1ppy_B ....
Probab=54.90  E-value=2.1  Score=16.37  Aligned_cols=72  Identities=13%  Similarity=0.170  Sum_probs=39.9

Q ss_pred             CCEEEEEECCCCEEEEEECCCCCCCEEECCCCCEE---ECCCCCEEEEECCCCEEECCCCCCCEEEEECCCCCEE
Q ss_conf             98799998789859998448876411411345348---9389989998046771430247775699990899899
Q T0558           203 AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLF---PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVV  274 (294)
Q Consensus       203 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~G~i~i~~~~~~~~~~~~~~~~~~~~i~~~G~~v  274 (294)
                      ...+.++|.++|+-+.++-.....++.....++..   ..+.-.+.+..|...+........++++-+|++.++.
T Consensus        41 ~E~V~I~Nv~NG~Rf~TYvI~g~~GSg~i~lNGAAAr~~~~GD~vII~ay~~~~~~e~~~~~P~vv~vd~~N~i~  115 (116)
T PF02261_consen   41 YEQVQIVNVNNGERFETYVIPGERGSGVICLNGAAARLVQPGDRVIIMAYAQMDEEEAKNHKPKVVFVDEKNRIK  115 (116)
T ss_dssp             TBEEEEEEST---EEEEEEEEE------EEEE--GGGTS----EEEEEEEEEEEHHHHHH---EEEEEETTSEEE
T ss_pred             CCEEEEEECCCCCEEEEEEEECCCCCCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCCCCEEEEECCCCCCC
T ss_conf             988999999999378999987368987798778898347999999999884579899833888699999999895


No 52 
>PF01453 B_lectin:  D-mannose binding lectin;  InterPro: IPR001480 Members of this domain are plant lectins. Curculin is a sweet-tasting and taste-modifying protein from the fruits of Curculigo latifolia (Lumbah). The three mannose-binding sites are devoid of mannose-binding activity . Other members of this domain are mannose specific and have diverse functions. The lectin of the saffron crocus (Crocus sativus) (Saffron) specifically interacts with a yeast mannan and is a major corm protein specifically expressed in this organ .    The actin-binding and vesicle-associated protein comitin exhibits a mannose-specific lectin activity and may have a role in cell motility. It binds to vesicle membranes via mannose residues and, by way of its interaction with actin, links these membranes to the cytoskeleton. ; GO: 0005529 sugar binding; PDB: 1npl_A 1niv_A 1msa_D 1jpc_A 1xd5_B 1xd6_A 1bwu_Q 1kj1_D 1b2p_A 1dlp_F ....
Probab=53.19  E-value=3.4  Score=14.84  Aligned_cols=19  Identities=16%  Similarity=0.108  Sum_probs=6.7

Q ss_pred             ECCCEEEEEECCCCEEEEE
Q ss_conf             4698899993788588985
Q T0558           161 FATSEVREIAPNGQLLNSV  179 (294)
Q Consensus       161 ~~d~~i~~~d~~g~~~~~~  179 (294)
                      ..||.+.++|..+..+|..
T Consensus        26 ~~dGnLvL~~~~~~~vWss   44 (114)
T PF01453_consen   26 QSDGNLVLYDGNGSVVWSS   44 (114)
T ss_dssp             ETTSEEEEEETT-EEEEE-
T ss_pred             CCCCEEEEECCCCCEEEEE
T ss_conf             9898399987998899982


No 53 
>PF06649 DUF1161:  Protein of unknown function (DUF1161);  InterPro: IPR010595   This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=50.92  E-value=3  Score=15.19  Aligned_cols=17  Identities=59%  Similarity=0.780  Sum_probs=13.1

Q ss_pred             CHHHHHHHHHHHHHHHC
Q ss_conf             90345568887663200
Q T0558             1 MKNFILLVALFLVAPFA   17 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~   17 (294)
                      ||.|+|.+++++.+..+
T Consensus         1 Mkk~~l~~~l~~la~~a   17 (75)
T PF06649_consen    1 MKKFLLAVALLLLAAPA   17 (75)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             93569999999985645


No 54 
>PF05399 EVI2A:  Ectropic viral integration site 2A protein (EVI2A);  InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours , .; GO: 0016021 integral to membrane
Probab=50.66  E-value=2.4  Score=15.93  Aligned_cols=11  Identities=9%  Similarity=-0.299  Sum_probs=4.7

Q ss_pred             CCCEEEEEECC
Q ss_conf             79869999887
Q T0558            31 GWNKIAIINKD   41 (294)
Q Consensus        31 ~~~~i~~~d~~   41 (294)
                      ..+.+.+|+..
T Consensus        32 w~~s~~~~~~~   42 (227)
T PF05399_consen   32 WANSNTAWDSI   42 (227)
T ss_pred             CCCCCEEECCC
T ss_conf             55563420320


No 55 
>PF10956 DUF2756:  Protein of unknown function (DUF2756)
Probab=50.23  E-value=2.6  Score=15.71  Aligned_cols=19  Identities=47%  Similarity=0.614  Sum_probs=15.4

Q ss_pred             CHHHHHHHHHHHHHHHCCC
Q ss_conf             9034556888766320014
Q T0558             1 MKNFILLVALFLVAPFAQG   19 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~   19 (294)
                      ||++.|+++++-.+.||++
T Consensus         1 mkr~l~l~allpf~~~Aqp   19 (104)
T PF10956_consen    1 MKRLLLLTALLPFAALAQP   19 (104)
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             9158999998688998616


No 56 
>PF05264 CfAFP:  Choristoneura fumiferana antifreeze protein (CfAFP);  InterPro: IPR007928   Antifreeze proteins (AFPs) are a class of proteins that are able to bind to and inhibit the growth of macromolecular ice, thereby permitting an organism to survive subzero temperatures by decreasing the probability of ice nucleation in their bodies . These proteins have been characterised from a variety of organisms, including fish, plants, bacteria, fungi and arthropods. This entry represents insect AFPs of the type found in spruce budworm, Choristoneura fumiferana.   The structure of these AFPs consists of a left-handed beta-helix with 15 residues per coil . The beta-helices of insect AFPs present a highly rigid array of threonine residues and bound water molecules that can effectively mimic the ice lattice. As such, beta-helical AFPs provide a more effective coverage of the ice surface compared to the alpha-helical fish AFPs.   A second insect antifreeze from Tenebrio molitor (IPR003460 from INTERPRO) also consists of beta-helices, however in these proteins the helices form a right-handed twist; these proteins show no sequence homology to the current entry, but may act by a similar mechanism. The beta-helix motif may be used as an AFP structural motif in non-homologous proteins from other (non-fish) organisms as well. ; PDB: 1l0s_B 1eww_A 1n4i_A 1m8n_B 1z2f_A.
Probab=47.53  E-value=1.6  Score=17.25  Aligned_cols=11  Identities=55%  Similarity=0.839  Sum_probs=9.4

Q ss_pred             CHHHHHHHHHH
Q ss_conf             90345568887
Q T0558             1 MKNFILLVALF   11 (294)
Q Consensus         1 ~~~~~~~~~~~   11 (294)
                      ||+||||.++-
T Consensus         1 mk~~~lim~la   11 (137)
T PF05264_consen    1 MKCFMLIMALA   11 (137)
T ss_dssp             -----------
T ss_pred             CCEEHHHHHHH
T ss_conf             90201206321


No 57 
>PF10614 Tafi-CsgF:  Curli production assembly/transport component CsgF
Probab=43.68  E-value=4.7  Score=13.82  Aligned_cols=26  Identities=38%  Similarity=0.390  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             903455688876632001478885899
Q T0558             1 MKNFILLVALFLVAPFAQGSSPQHLLV   27 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~~~~l~   27 (294)
                      ||+++++..+++++. +..+.+..++.
T Consensus         1 mk~~~l~a~l~~~~~-a~~a~A~~LVY   26 (142)
T PF10614_consen    1 MKYRGLLAVLLLLAA-AGPAQAQELVY   26 (142)
T ss_pred             CCCHHHHHHHHHHHH-CCCCCHHHEEE
T ss_conf             916399999999982-55000422255


No 58 
>PF10279 Latarcin:  Latarcin precursor; PDB: 2g9p_A 2pco_A.
Probab=43.04  E-value=2.1  Score=16.43  Aligned_cols=12  Identities=42%  Similarity=0.681  Sum_probs=10.1

Q ss_pred             CHHHHHHHHHHH
Q ss_conf             903455688876
Q T0558             1 MKNFILLVALFL   12 (294)
Q Consensus         1 ~~~~~~~~~~~~   12 (294)
                      ||||+++.++.+
T Consensus         1 MKyfvVaLaL~v   12 (105)
T PF10279_consen    1 MKYFVVALALAV   12 (105)
T ss_dssp             ------------
T ss_pred             CCCHHHHHHHHH
T ss_conf             902599999999


No 59 
>PF03646 FlaG:  FlaG protein;  InterPro: IPR005186   Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2hc5_A.
Probab=39.44  E-value=5.4  Score=13.37  Aligned_cols=16  Identities=31%  Similarity=0.752  Sum_probs=6.0

Q ss_pred             EEEEECCCCEEEEEEE
Q ss_conf             9999887882999994
Q T0558            35 IAIINKDTKEIVWEYP   50 (294)
Q Consensus        35 i~~~d~~tg~~~w~~~   50 (294)
                      |.++|.+||+++.+.|
T Consensus        70 VkViD~~T~eVIRqIP   85 (107)
T PF03646_consen   70 VKVIDKETGEVIRQIP   85 (107)
T ss_dssp             EEEEETTT-SEEEEE-
T ss_pred             EEEEECCCCCEEEECC
T ss_conf             9999899883424488


No 60 
>PF01939 DUF91:  Protein of unknown function DUF91;  InterPro: IPR002793    The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes .; PDB: 2vld_B.
Probab=39.10  E-value=5.4  Score=13.34  Aligned_cols=14  Identities=14%  Similarity=0.304  Sum_probs=5.5

Q ss_pred             EEEECCCCEEEEEC
Q ss_conf             47907983998418
Q T0558            60 VAATKAGEILFSYS   73 (294)
Q Consensus        60 ~~~~pdG~~l~s~~   73 (294)
                      +.+.|||.+++=++
T Consensus        30 livKpDGsvlVH~~   43 (228)
T PF01939_consen   30 LIVKPDGSVLVHSD   43 (228)
T ss_dssp             EEE-----EEEE-S
T ss_pred             EEEECCCCEEEECC
T ss_conf             99906981899478


No 61 
>PF07676 PD40:  WD40-like Beta Propeller Repeat;  InterPro: IPR011659 This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2w8b_D 1crz_A 2hqs_B 1c5k_A 2ivz_D 1k32_A 1n6e_C 1n6f_A 1n6d_F 2ojh_A ....
Probab=36.84  E-value=5.9  Score=13.09  Aligned_cols=15  Identities=27%  Similarity=0.355  Sum_probs=5.5

Q ss_pred             EEEECCCCCEEEEEE
Q ss_conf             878737875899970
Q T0558            99 TARILPDGNALVAWC  113 (294)
Q Consensus        99 ~~~~~~dg~~l~~~s  113 (294)
                      ...|+|||++++..+
T Consensus        13 ~p~~SpDG~~i~f~s   27 (39)
T PF07676_consen   13 SPSWSPDGKYIVFSS   27 (39)
T ss_dssp             EEEE-TTSSEEEEEE
T ss_pred             CEEECCCCCEEEEEE
T ss_conf             879867999999984


No 62 
>PF07202 Tcp10_C:  T-complex protein 10 C-terminus;  InterPro: IPR009852   Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerizes taxol-stabilized microtubules , . These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats .
Probab=34.08  E-value=6.5  Score=12.79  Aligned_cols=98  Identities=12%  Similarity=0.206  Sum_probs=45.3

Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEE
Q ss_conf             69989999974698899993788588985169734898873489689973589879999878985999844887641141
Q T0558           151 NKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQL  230 (294)
Q Consensus       151 s~dG~~i~~g~~d~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  230 (294)
                      -|||.-.+ ..-||+++...++|...+.            .|||........+.  ..+...+|+..-...         
T Consensus        80 ~pdG~KeI-~FPDGt~k~i~~dG~ee~~------------~pDGt~~~v~~ng~--k~I~~pNG~~~ih~~---------  135 (179)
T PF07202_consen   80 YPDGSKEI-LFPDGTIKVIHPDGEEETI------------FPDGTVVTVNPNGD--KTIEFPNGQQEIHTA---------  135 (179)
T ss_pred             ECCCCEEE-EECCCCEEEEECCCCEEEE------------ECCCEEEEEECCCC--EEEECCCCCEEEEEC---------
T ss_conf             58998999-9799749999189958999------------18963999915873--899858985999846---------


Q ss_pred             CCCCCEEECCCCCEEEEECCCCEEECCCCCCCEEEEECCCCCEEEE
Q ss_conf             1345348938998999804677143024777569999089989999
Q T0558           231 FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ  276 (294)
Q Consensus       231 ~~~~~~~~~~~G~i~i~~~~~~~~~~~~~~~~~~~~i~~~G~~vW~  276 (294)
                        .......|||++...--+|.....  ..++++-.-|++|++|-+
T Consensus       136 --~~~~~~yPdGt~k~~~~~G~q~~~--y~~gr~~~kd~~g~~~~~  177 (179)
T PF07202_consen  136 --DYKRREYPDGTVKTVYPDGRQETR--YSNGRVRVKDKDGNVIMD  177 (179)
T ss_pred             --CCEEEECCCCCEEEEECCCCEEEE--ECCCEEEEECCCCCEEEE
T ss_conf             --738998899829999659968987--258679997478879840


No 63 
>PF04202 Mfp-3:  Foot protein 3;  InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=32.43  E-value=6.9  Score=12.61  Aligned_cols=23  Identities=48%  Similarity=0.677  Sum_probs=14.4

Q ss_pred             CHHHHH--HHHHHHHHHHCCCCCCC
Q ss_conf             903455--68887663200147888
Q T0558             1 MKNFIL--LVALFLVAPFAQGSSPQ   23 (294)
Q Consensus         1 ~~~~~~--~~~~~~~~~~~~~s~~~   23 (294)
                      |++|-+  +++++||..|+.-|-+.
T Consensus         1 Mn~~Sv~VLvaLVLiGsFAVqSDA~   25 (71)
T PF04202_consen    1 MNNFSVSVLVALVLIGSFAVQSDAG   25 (71)
T ss_pred             CCCCHHHHHHHHHHHHHHEEECCCC
T ss_conf             9740146999999862311421553


No 64 
>PF01731 Arylesterase:  Arylesterase;  InterPro: IPR002640    The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity .     Mammals have 3 distinct paraoxonase types, termed PON1-3 , . In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity.     Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophilic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) . Although PON2 has oxidative properties, the enzyme does not associate with HDL.     Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo .  This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity . Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation .; GO: 0004064 arylesterase activity; PDB: 1v04_A.
Probab=31.87  E-value=7  Score=12.54  Aligned_cols=28  Identities=18%  Similarity=0.199  Sum_probs=17.2

Q ss_pred             CCEEEECCCCCEEEEEEC-CCEEEEEECC
Q ss_conf             008999699899999746-9889999378
Q T0558           145 FRQINKNKKGNYLVPLFA-TSEVREIAPN  172 (294)
Q Consensus       145 ~~~~~~s~dG~~i~~g~~-d~~i~~~d~~  172 (294)
                      .+.+..+||++++++++. ...|+++.++
T Consensus        56 aNGI~~s~d~k~vyVa~~~~~~v~v~~~~   84 (86)
T PF01731_consen   56 ANGINISPDGKYVYVASSMAHSVHVYKRH   84 (86)
T ss_dssp             B---EE-----EEEEEETTTTEEEEEEE-
T ss_pred             CCCEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf             77658889988999941654308999971


No 65 
>PF00993 MHC_II_alpha:  Class II histocompatibility antigen, alpha domain;  InterPro: IPR001003   Major Histocompatibility Complex (MHC) glycoproteins are heterodimeric cell surface receptors that function to present antigen peptide fragments to T cells responsible for cell-mediated immune responses. MHC molecules can be subdivided into two groups on the basis of structure and function: class I molecules present intracellular antigen peptide fragments (~10 amino acids) on the surface of the host cells to cytotoxic T cells; class II molecules present exogenously derived antigenic peptides (~15 amino acids) to helper T cells. MHC class I and II molecules are assembled and loaded with their peptide ligands via different mechanisms. However, both present peptide fragments rather than entire proteins to T cells, and are required to mount an immune response.   Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection) .   MHC class II molecules are comprised of two membrane-spanning chains, alpha and beta, of similar size. Both chains consist of two globular domains (N- and C-terminal), and a transmembrane segment to anchor them to the membrane . A groove in the structure acts as the peptide-binding site.   This entry represents the N-terminal domain (also called alpha-1 domain) of the alpha chain.   More information about these proteins can be found at Protein of the Month: MHC .; GO: 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane, 0042613 MHC class II protein complex; PDB: 1r5v_A 1fng_C 1i3r_E 1fne_A 1r5w_A 1kt2_C 1ktd_A 1ieb_C 1iea_C 1zgl_A ....
Probab=31.34  E-value=7.1  Score=12.48  Aligned_cols=20  Identities=15%  Similarity=0.120  Sum_probs=8.7

Q ss_pred             CCCCEEEEEECCCCEEEEEE
Q ss_conf             58987999987898599984
Q T0558           201 GDAHCFVQLNLESNRIVRRV  220 (294)
Q Consensus       201 ~~~~~i~~~d~~~g~~~~~~  220 (294)
                      -++..+.-.|...++.+|++
T Consensus        23 fDgeElfy~Df~kke~V~~l   42 (82)
T PF00993_consen   23 FDGEELFYADFKKKEGVWRL   42 (82)
T ss_dssp             ETTEEEEEEETTTTEEEESS
T ss_pred             ECCCEEEEEECCCCCEEEEC
T ss_conf             07766899864678068857


No 66 
>PF06422 PDR_CDR:  CDR ABC transporter;  InterPro: IPR010929   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments . This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=30.73  E-value=5.3  Score=13.44  Aligned_cols=10  Identities=40%  Similarity=0.810  Sum_probs=4.6

Q ss_pred             HHHHHHHHHH
Q ss_conf             0345568887
Q T0558             2 KNFILLVALF   11 (294)
Q Consensus         2 ~~~~~~~~~~   11 (294)
                      |||.|+++++
T Consensus        50 RN~GIl~aF~   59 (103)
T PF06422_consen   50 RNFGILIAFI   59 (103)
T ss_pred             HHHHHHHHHH
T ss_conf             3379999999


No 67 
>PF07403 DUF1505:  Protein of unknown function (DUF1505);  InterPro: IPR009981   This family consists of several uncharacterised Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
Probab=27.98  E-value=8.1  Score=12.09  Aligned_cols=24  Identities=33%  Similarity=0.397  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             903455688876632001478885
Q T0558             1 MKNFILLVALFLVAPFAQGSSPQH   24 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~~~   24 (294)
                      |+-|++++.++.+.......++..
T Consensus         1 Mn~~~~tvl~lsv~iA~~~~~~S~   24 (114)
T PF07403_consen    1 MNFFILTVLFLSVTIAGVSGSPSS   24 (114)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             973002057678777635677544


No 68 
>PF10907 DUF2749:  Protein of unknown function (DUF2749)
Probab=26.86  E-value=8.4  Score=11.95  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             9034556888766320014788858999747
Q T0558             1 MKNFILLVALFLVAPFAQGSSPQHLLVGGSG   31 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~gs~   31 (294)
                      |+.++||+-+++   .+.++.....|++.+.
T Consensus         1 ms~~vlIal~va---vAa~a~~at~liV~p~   28 (66)
T PF10907_consen    1 MSPRVLIALLVA---VAAAAGAATWLIVQPR   28 (66)
T ss_pred             CCCCHHHHHHHH---HHHHCCCEEEEEECCC
T ss_conf             970049999999---9862362489997787


No 69 
>PF11714 Inhibitor_I53:  Thrombin inhibitor Madanin  
Probab=26.81  E-value=8.5  Score=11.95  Aligned_cols=18  Identities=22%  Similarity=0.464  Sum_probs=11.8

Q ss_pred             CHHHHHHHHHHHHHHHCC
Q ss_conf             903455688876632001
Q T0558             1 MKNFILLVALFLVAPFAQ   18 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~   18 (294)
                      ||-|.|++...++..++-
T Consensus         1 mkhfaililavvasavvm   18 (78)
T PF11714_consen    1 MKHFAILILAVVASAVVM   18 (78)
T ss_pred             CCCEEHHHHHHHHHHHHH
T ss_conf             951421489998878862


No 70 
>PF03548 LolA:  Outer membrane lipoprotein carrier protein LolA;  InterPro: IPR004564   This protein, LolA, is known so far only in the gamma subdivision of the Proteobacteria. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 . Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and the molecular chaperone, LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane.    E. coli lipoproteins are anchored to the inner or outer membrane depending on the residue at position 2. Aspartate at this position makes lipoproteins specific to the inner membrane, whereas other residues cause the release of lipoproteins from the inner membrane.; GO: 0015031 protein transport, 0030288 outer membrane-bounded periplasmic space; PDB: 1ua8_A 2zpc_A 1iwl_A 2zpd_A.
Probab=25.56  E-value=8.9  Score=11.79  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=22.8

Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCEEEEEECCCCCE
Q ss_conf             9869999887882999994499873116479079839984188289975267703
Q T0558            32 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRDGREL   86 (294)
Q Consensus        32 ~~~i~~~d~~tg~~~w~~~~~~~~~~~~~~~~pdG~~l~s~~~~v~~~~~~~~~~   86 (294)
                      .|++.+-.  -+++.|++.            .|+...+++.+..+.+++.+.+++
T Consensus        26 ~G~~~~~k--p~~~rw~~~------------~P~~~~iv~~g~~l~~y~~~~~qv   66 (165)
T PF03548_consen   26 SGKFYFKK--PGKFRWEYE------------KPDEQTIVSDGKTLWIYDPDLKQV   66 (165)
T ss_dssp             ---EEEET--TTEEEEEE-------------SSS-EEEEE---EEEEEECCCTEE
T ss_pred             EEEEEEEC--CCEEEEEEC------------CCCCEEEEEECCEEEEEECCCCEE
T ss_conf             99999978--991999996------------988579999799999991888788


No 71 
>PF07172 GRP:  Glycine rich protein family;  InterPro: IPR010800   This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses.
Probab=25.22  E-value=9  Score=11.75  Aligned_cols=12  Identities=42%  Similarity=0.587  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             034556888766
Q T0558             2 KNFILLVALFLV   13 (294)
Q Consensus         2 ~~~~~~~~~~~~   13 (294)
                      |.|+|+..+|++
T Consensus         4 k~~llL~lllA~   15 (95)
T PF07172_consen    4 KAFLLLGLLLAA   15 (95)
T ss_pred             HHHHHHHHHHHH
T ss_conf             799999999999


No 72 
>PF03527 RHS:  RHS protein;  InterPro: IPR001826   RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell. The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains , . The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat. 
Probab=22.84  E-value=9.9  Score=11.43  Aligned_cols=14  Identities=29%  Similarity=0.696  Sum_probs=9.0

Q ss_pred             EECCCCCEEEEEEC
Q ss_conf             99089989999835
Q T0558           266 EIDSEGKVVWQLND  279 (294)
Q Consensus       266 ~i~~~G~~vW~~~~  279 (294)
                      .+|.+|+++|+-..
T Consensus        15 ltd~~G~ivW~a~Y   28 (41)
T PF03527_consen   15 LTDEDGEIVWSARY   28 (41)
T ss_pred             HCCCCCCEEEEEEH
T ss_conf             70889859999872


No 73 
>PF05436 MF_alpha_N:  Mating factor alpha precursor N-terminus;  InterPro: IPR008675 This entry contains the N-terminal regions of the Saccharomyces mating factor alpha precursor protein. All proteins in this family contain one or more copies of IPR006742 from INTERPRO further toward their C terminus.; GO: 0007618 mating, 0005576 extracellular region
Probab=22.76  E-value=10  Score=11.42  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=18.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             90345568887663200147888
Q T0558             1 MKNFILLVALFLVAPFAQGSSPQ   23 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~~   23 (294)
                      ||-+.++.++.+++..+++++++
T Consensus         1 Mkf~~ilsa~~la~~av~aa~~~   23 (86)
T PF05436_consen    1 MKFSSILSAVALAATAVSAAPVE   23 (86)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             92578999999999871268876


No 74 
>PF12273 RCR:  Chitin synthesis regulation, resistance to Congo red
Probab=21.28  E-value=11  Score=11.22  Aligned_cols=14  Identities=21%  Similarity=0.489  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             45568887663200
Q T0558             4 FILLVALFLVAPFA   17 (294)
Q Consensus         4 ~~~~~~~~~~~~~~   17 (294)
                      |.|+|+++++..|+
T Consensus         5 ~~iiv~~i~i~~~~   18 (130)
T PF12273_consen    5 FAIIVIAIFIIFFL   18 (130)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             79999999999999


No 75 
>PF08801 Nucleoporin_N:  Nup133 N terminal like;  InterPro: IPR014908   Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) biogenesis. The N-terminal forms a seven-bladed beta propeller structure . ; PDB: 1xks_A.
Probab=21.06  E-value=11  Score=11.19  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=25.9

Q ss_pred             CCEEEECCCCCEEEEEECCCEEEEEECC--CCEEEE
Q ss_conf             0089996998999997469889999378--858898
Q T0558           145 FRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNS  178 (294)
Q Consensus       145 ~~~~~~s~dG~~i~~g~~d~~i~~~d~~--g~~~~~  178 (294)
                      +..+...+.-+++++...++.|.+|+..  +.....
T Consensus       194 I~~i~~d~~r~~ly~lts~g~i~~w~l~~~~~~~~~  229 (424)
T PF08801_consen  194 IVSIKVDPSRRLLYTLTSKGTIQVWDLSWGGSSLVR  229 (424)
T ss_dssp             EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EEEEE
T ss_pred             EEEEEECCCCEEEEEEECCCCEEEEEECCCCCHHHH
T ss_conf             699996686309999968997799994489721210


No 76 
>PF10793 Gloverin:  Gloverin-like protein 
Probab=20.57  E-value=11  Score=11.12  Aligned_cols=20  Identities=30%  Similarity=0.348  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             45568887663200147888
Q T0558             4 FILLVALFLVAPFAQGSSPQ   23 (294)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~~   23 (294)
                      ..++.+.+|+|.++|-+-|-
T Consensus         5 l~~~~a~~~~c~~aqV~~pp   24 (175)
T PF10793_consen    5 LLIIFAAVLACVNAQVSLPP   24 (175)
T ss_pred             EEHHHHHHHHHHHEEEECCC
T ss_conf             41378999876301463375


No 77 
>PF10395 Utp8:  Utp8 family
Probab=20.47  E-value=11  Score=11.10  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=50.2

Q ss_pred             EEEEECCCCEEEEEEECCCCCCCCEEEEE--CCCCEEE-EE--C-CEEEEE--ECC----------CCCEEEEECCCCCC
Q ss_conf             99998878829999944998731164790--7983998-41--8-828997--526----------77036772377763
Q T0558            35 IAIINKDTKEIVWEYPLEKGWECNSVAAT--KAGEILF-SY--S-KGAKMI--TRD----------GRELWNIAAPAGCE   96 (294)
Q Consensus        35 i~~~d~~tg~~~w~~~~~~~~~~~~~~~~--pdG~~l~-s~--~-~~v~~~--~~~----------~~~~~~~~~~~~~~   96 (294)
                      -+++++ |-|++|.+++...--+.++...  .|+.-++ .+  + +.-+..  ...          ++..-.+...-...
T Consensus        53 sYiikP-TPKLvws~pL~pTtiV~~~dV~~~~~~~k~~~vGlt~rkk~~lll~~~~~~~~~~~~~~~e~~~~~e~kl~~k  131 (670)
T PF10395_consen   53 SYIIKP-TPKLVWSYPLSPTTIVEAMDVLEKSDGKKYYCVGLTERKKHKLLLIERKRSDTADGNSNGETTNEFELKLDDK  131 (670)
T ss_pred             HEECCC-CCCEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCHHEEEECCCC
T ss_conf             403579-9600570457855547765678637894699999832771489999822455556776766212136771572


Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             148787378758999705897999985
Q T0558            97 MQTARILPDGNALVAWCGHPSTILEVN  123 (294)
Q Consensus        97 v~~~~~~~dg~~l~~~s~~~~~~~~~~  123 (294)
                      +.++.+.++++.+++.-.++.+-..+.
T Consensus       132 vv~Vk~~~~~~~I~vv~~nG~i~~~~~  158 (670)
T PF10395_consen  132 VVGVKFSSDGKIIVVVLENGLIQLYDF  158 (670)
T ss_pred             EEEEEECCCCCEEEEEEECCCEEEEEE
T ss_conf             789998178978999991796899962


Done!