Query T0559 BvR153, , 69 residues
Match_columns 69
No_of_seqs 48 out of 50
Neff 3.6
Searched_HMMs 22458
Date Tue May 25 15:36:51 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0559.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0559.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cfx_A HTH-type transcriptiona 80.0 2.3 0.0001 21.8 4.8 50 1-56 1-50 (144)
2 2p5v_A Transcriptional regulat 77.5 1.5 6.8E-05 22.8 3.2 53 3-56 3-55 (162)
3 1ub9_A Hypothetical protein PH 76.3 3.7 0.00017 20.7 4.9 56 12-68 18-76 (100)
4 1on2_A Transcriptional regulat 73.5 4.8 0.00021 20.2 4.9 58 3-61 1-58 (142)
5 1xmk_A Double-stranded RNA-spe 73.3 3.5 0.00016 20.9 4.2 53 7-59 8-60 (79)
6 2cyy_A Putative HTH-type trans 73.0 2.1 9.3E-05 22.0 3.0 43 13-56 10-52 (151)
7 3gva_A Alkyltransferase-like p 72.7 3.1 0.00014 21.2 3.8 48 1-56 1-51 (116)
8 2cg4_A Regulatory protein ASNC 67.1 3.5 0.00016 20.9 3.1 53 3-56 1-53 (152)
9 1z6r_A MLC protein; transcript 66.1 7.4 0.00033 19.2 4.6 48 9-57 15-62 (406)
10 3i4p_A Transcriptional regulat 64.7 6.4 0.00028 19.5 4.0 42 14-56 7-48 (162)
11 2e1c_A Putative HTH-type trans 64.5 4.8 0.00021 20.2 3.3 44 12-56 29-72 (171)
12 1z05_A Transcriptional regulat 63.8 7.8 0.00035 19.1 4.3 48 9-57 38-85 (429)
13 3cuo_A Uncharacterized HTH-typ 63.7 8.3 0.00037 18.9 6.0 55 13-68 27-81 (99)
14 2heo_A Z-DNA binding protein 1 63.1 7.4 0.00033 19.2 4.1 46 13-59 13-59 (67)
15 2w25_A Probable transcriptiona 61.0 7.4 0.00033 19.2 3.8 43 13-56 10-52 (150)
16 2v1n_A KIN17, protein KIN homo 58.7 6.4 0.00029 19.5 3.2 52 11-69 41-93 (111)
17 2kko_A Possible transcriptiona 57.6 11 0.00048 18.3 5.8 52 15-68 30-81 (108)
18 2dbb_A Putative HTH-type trans 56.7 8 0.00035 19.0 3.4 46 10-56 9-54 (151)
19 2ia0_A Putative HTH-type trans 56.3 9.5 0.00042 18.6 3.7 46 10-56 17-62 (171)
20 1sfe_A ADA O6-methylguanine-DN 56.3 8.7 0.00039 18.8 3.5 41 13-56 99-142 (180)
21 2pn6_A ST1022, 150AA long hypo 55.9 11 0.00048 18.3 3.9 43 13-56 6-48 (150)
22 2zkz_A Transcriptional repress 48.1 16 0.0007 17.5 4.9 53 14-68 31-83 (99)
23 2kif_A O6-methylguanine-DNA me 45.8 12 0.00052 18.2 2.8 42 12-56 5-49 (108)
24 1ku9_A Hypothetical protein MJ 45.0 18 0.00079 17.2 4.4 62 6-68 22-87 (152)
25 1wrj_A Methylated-DNA--protein 44.8 16 0.0007 17.5 3.3 41 12-57 73-116 (156)
26 1u2w_A CADC repressor, cadmium 43.1 19 0.00085 17.1 4.3 54 14-68 46-99 (122)
27 1qnt_A Methylated-DNA--protein 42.7 15 0.00065 17.7 2.9 40 14-56 98-140 (176)
28 3go5_A Multidomain protein wit 41.6 20 0.0009 16.9 4.7 52 7-59 221-279 (285)
29 3eyi_A Z-DNA-binding protein 1 39.9 19 0.00083 17.1 3.1 52 11-62 11-62 (72)
30 1sfx_A Conserved hypothetical 37.7 23 0.001 16.6 4.3 56 10-66 20-77 (109)
31 1i1g_A Transcriptional regulat 37.3 21 0.00091 16.9 3.0 41 14-55 8-48 (141)
32 2h09_A Transcriptional regulat 36.9 24 0.0011 16.5 3.8 51 10-61 40-90 (155)
33 1qgp_A Protein (double strande 35.9 19 0.00084 17.1 2.6 47 12-59 16-65 (77)
34 2g7h_A Methylated-DNA--protein 35.1 26 0.0012 16.4 3.4 39 13-56 82-123 (167)
35 2v9v_A Selenocysteine-specific 32.2 29 0.0013 16.1 5.3 54 12-66 4-58 (135)
36 2pjp_A Selenocysteine-specific 30.6 28 0.0012 16.2 2.7 33 23-56 19-51 (121)
37 3jth_A Transcription activator 28.1 35 0.0015 15.7 6.7 51 16-68 29-79 (98)
38 3b7h_A Prophage LP1 protein 11 28.0 35 0.0015 15.7 3.4 33 1-37 1-33 (78)
39 2gqq_A Leucine-responsive regu 24.9 11 0.00048 18.4 -0.2 44 12-56 15-58 (163)
40 1q1h_A TFE, transcription fact 24.2 25 0.0011 16.4 1.6 58 3-61 11-69 (110)
41 3bdd_A Regulatory protein MARR 23.5 42 0.0019 15.3 5.4 57 11-68 32-91 (142)
42 2qlz_A Transcription factor PF 23.5 43 0.0019 15.3 4.9 44 14-58 168-211 (232)
43 1eh6_A O6-alkylguanine-DNA alk 21.5 40 0.0018 15.4 2.2 41 14-57 98-141 (207)
44 1wgf_A Upstream binding factor 20.4 19 0.00084 17.1 0.3 41 3-43 46-86 (90)
45 1ckt_A High mobility group 1 p 20.1 50 0.0022 14.9 3.1 34 2-35 28-61 (71)
No 1
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=79.99 E-value=2.3 Score=21.79 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 96416777678999999761788447888988848980046886431441268135
Q T0559 1 MKMLKEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 1 ~~M~k~~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
||||.-.. +|=++|.+|+..|+.+|.+++|++ ...+..-|-=|-.++=|.
T Consensus 1 m~lD~~D~-----~Il~~L~~n~R~s~~eia~~~g~s-~~tv~~Ri~rL~~~GiI~ 50 (144)
T 2cfx_A 1 MKLDQIDL-----NIIEELKKDSRLSMRELGRKIKLS-PPSVTERVRQLESFGIIK 50 (144)
T ss_dssp CCCCHHHH-----HHHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHH-----HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHCCHHHH
T ss_conf 98788999-----999999984899999999998858-889999999872012444
No 2
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=77.54 E-value=1.5 Score=22.76 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 416777678999999761788447888988848980046886431441268135
Q T0559 3 MLKEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 3 M~k~~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
|.+-+.-..--+|.++|.+|+..|+.+|.+++|++ ...+..-|--|-.++=|.
T Consensus 3 m~~~~lD~~D~~Il~~L~~d~R~s~~eia~~~gls-~~tv~~Ri~~L~~~GiI~ 55 (162)
T 2p5v_A 3 MPQLTLDKTDIKILQVLQENGRLTNVELSERVALS-PSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp --CCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 89898189999999999983899999999998919-999999999998579247
No 3
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=76.31 E-value=3.7 Score=20.74 Aligned_cols=56 Identities=21% Similarity=0.062 Sum_probs=44.9
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEC---CEEEEEE
Q ss_conf 99999976178844788898884898004688643144126813576407---7388875
Q T0559 12 AGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVE---GEIFVKL 68 (69)
Q Consensus 12 AG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~---gel~v~L 68 (69)
--.|..+|.++++.++++|.+.++++ ..-+..-+--|..++=|..+... +..+++|
T Consensus 18 r~~Il~~L~~~~~~~~~eLa~~l~is-~~~vs~~l~~L~~~GlV~~~~~~~d~r~~~~~L 76 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVLDLT-PGNLDSHIRVLERNGLVKTYKVIADRPRTVVEI 76 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 99999997267896199999988526-874419999864212488887676675420226
No 4
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=73.49 E-value=4.8 Score=20.19 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 41677767899999976178844788898884898004688643144126813576407
Q T0559 3 MLKEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVE 61 (69)
Q Consensus 3 M~k~~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~ 61 (69)
|....+-..--.||.+..+.+..+.++|++..+.+ -..+..++.-|.+++=|..+...
T Consensus 1 m~t~~~EdYL~~I~~l~~~~~~v~~~~iA~~L~vs-~~svt~~lk~L~~~GlV~~~~~~ 58 (142)
T 1on2_A 1 MTTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVH-PSSVTKMVQKLDKDEYLIYEKYR 58 (142)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98960999999999999638997699999996988-78999999999977996506898
No 5
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=73.28 E-value=3.5 Score=20.88 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 77678999999761788447888988848980046886431441268135764
Q T0559 7 KAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSE 59 (69)
Q Consensus 7 ~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e 59 (69)
.+-.+..+|-.+|-+.++-+.-.|.|..|++.-+|++.++==|.|.+++.-+.
T Consensus 8 d~~~~~ekI~~~L~~~g~stAl~lak~lgl~kakeVN~~LY~Lek~g~v~k~~ 60 (79)
T 1xmk_A 8 DMAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQG 60 (79)
T ss_dssp HHHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 74378999999999659843999999949972677759999999756800179
No 6
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.96 E-value=2.1 Score=22.04 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=37.6
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 99999761788447888988848980046886431441268135
Q T0559 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 13 G~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
=+|-..|.+|+..|+.+|.+.+|++ ...+..-+..|-.++-|.
T Consensus 10 ~~IL~~L~~n~R~s~~~iA~~lg~S-~~tv~~Ri~~L~~~GiI~ 52 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 9999999974899999999998929-899999999997334302
No 7
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X*
Probab=72.73 E-value=3.1 Score=21.19 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9641677767899999976178---8447888988848980046886431441268135
Q T0559 1 MKMLKEKAGALAGQIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 1 ~~M~k~~IG~nAG~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
|||+. ---+||.+|..- ...||.+|++..|.+. -+.|+|+..+.|.+.
T Consensus 1 m~~~~-----F~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~---~aRaVG~al~~np~~ 51 (116)
T 3gva_A 1 MRMDE-----FYTKVYDAVCEIPYGKVSTYGEIARYVGMPS---YARQVGQAMKHLHPE 51 (116)
T ss_dssp -CHHH-----HHHHHHHHHTTSCTTCBBCHHHHHHHTTCTT---CHHHHHHHHHTSCTT
T ss_pred CCHHH-----HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC---CHHHHHHHHHHCCCC
T ss_conf 96408-----9999999980489987498999999819985---307999999858999
No 8
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=67.09 E-value=3.5 Score=20.88 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 416777678999999761788447888988848980046886431441268135
Q T0559 3 MLKEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 3 M~k~~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
|.+..+-..-=+|=++|.+|+..|+++|.+++|++ ...+..-+-=|-.++=|.
T Consensus 1 m~~~~lD~~D~~Il~~L~~d~R~s~~eia~~~g~s-~~tv~~Ri~rL~~~GiI~ 53 (152)
T 2cg4_A 1 MENYLIDNLDRGILEALMGNARTAYAELAKQFGVS-PETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp ---CCCCHHHHHHHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHCCCCEE
T ss_conf 98554579999999999985899999999998877-589999999971125210
No 9
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=66.13 E-value=7.4 Score=19.21 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 6789999997617884478889888489800468864314412681357
Q T0559 9 GALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 9 G~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
..|...|-++|..+++.|-.+|.+.|+|+ -..+..-+.=|.+++-|.-
T Consensus 15 ~~N~~~il~~i~~~g~~SR~ela~~~gLs-~~Tvs~iv~~L~~~glv~e 62 (406)
T 1z6r_A 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999985991899999887959-9999999999998898896
No 10
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=64.70 E-value=6.4 Score=19.54 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999761788447888988848980046886431441268135
Q T0559 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 14 ~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
+|=++|.+|+..|+.+|.+++|++ ...+..-|--|-.++-|.
T Consensus 7 ~IL~~L~~d~R~s~~eiA~~lglS-~~tv~~Ri~rL~~~GiI~ 48 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 999999985899999999998919-999999999998379746
No 11
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=64.46 E-value=4.8 Score=20.19 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999999761788447888988848980046886431441268135
Q T0559 12 AGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 12 AG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
-=+|-++|.+|+..|+.+|.+++|++ ...+..-+-.|-.++=|.
T Consensus 29 D~~IL~~L~~d~R~s~~eiA~~lglS-~~tV~~Ri~rL~~~GiI~ 72 (171)
T 2e1c_A 29 DKKIIKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 99999999983899999999998909-999999999998489824
No 12
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=63.83 E-value=7.8 Score=19.09 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 6789999997617884478889888489800468864314412681357
Q T0559 9 GALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 9 G~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
-.|...|-++|.++++.|-.+|.+.|+|+ -..+..-+.=|..++-|.-
T Consensus 38 ~~N~~~Il~~i~~~g~iSR~eLa~~tgLS-~~TVs~iv~~L~~~gli~e 85 (429)
T 1z05_A 38 QINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999985991899999887969-9999999999998896898
No 13
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=63.71 E-value=8.3 Score=18.93 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=46.7
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 99999761788447888988848980046886431441268135764077388875
Q T0559 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKL 68 (69)
Q Consensus 13 G~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v~L 68 (69)
=.|-.+|.+.+..+.++|.+.++++ ...+-.-+.-|-+.|=|..++.....|.++
T Consensus 27 l~Il~~L~~~~~~~~~ela~~l~ls-~stvS~HL~~L~~aGlV~~~r~G~~~~Y~l 81 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGLS-ASATSQHLARMRDEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEEEECSSCEEEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEEECCEEEEEE
T ss_conf 9999999769994199999998929-878999999999889517998889999998
No 14
>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=63.13 E-value=7.4 Score=19.20 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHHHCCC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9999976178-8447888988848980046886431441268135764
Q T0559 13 GQIWEALNGT-EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSE 59 (69)
Q Consensus 13 G~IW~~L~e~-~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e 59 (69)
-+|-+.|.+. .+.+..+|.+.++++ -+|+..|+==|..|+||.-..
T Consensus 13 qkVL~~L~eaG~p~~a~~iA~~~gv~-KKeVnk~l~~LKkegki~spk 59 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVSSPS 59 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999768978799999998878-899999999998776805898
No 15
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=61.01 E-value=7.4 Score=19.20 Aligned_cols=43 Identities=12% Similarity=-0.003 Sum_probs=37.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 99999761788447888988848980046886431441268135
Q T0559 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 13 G~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
=+|=++|.+|+..|+.+|++++|++ ...+..-+--|-.++-|.
T Consensus 10 ~~Il~~L~~d~R~s~~~ia~~lgls-~~tv~~Ri~~L~~~giI~ 52 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLS-VSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCHHC
T ss_conf 9999999984899999999998909-999999999984010102
No 16
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=58.72 E-value=6.4 Score=19.52 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=34.4
Q ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 89999997-617884478889888489800468864314412681357640773888758
Q T0559 11 LAGQIWEA-LNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKLV 69 (69)
Q Consensus 11 nAG~IW~~-L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v~Lv 69 (69)
+|-+|++- .++..+.-+- +|... .|.-=+-||.||+++..++.+.-+|++.|
T Consensus 41 ~aN~vY~EyI~dk~HiHMN----aT~W~---sLT~FvkyLgr~G~c~VdetekG~fI~yI 93 (111)
T 2v1n_A 41 HNNIVYNEYISHREHIHMN----ATQWE---TLTDFTKWLGREGLCKVDETPKGWYIQYI 93 (111)
T ss_dssp EHHHHHHHHTTSSCCCCGG----GSSCS---SHHHHHHHHTTTTSEEEEEETTEEEEEEC
T ss_pred ECHHHHHHHHCCCCCCEEC----CCCCC---CHHHHHHHHHHCCCEEEECCCCCEEEEEE
T ss_conf 0138899986466751215----65052---49999999631681788517981689864
No 17
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=57.59 E-value=11 Score=18.34 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=43.4
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 999761788447888988848980046886431441268135764077388875
Q T0559 15 IWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKL 68 (69)
Q Consensus 15 IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v~L 68 (69)
|-.+|.+ ++.++++|...++++ ...+..-+--|.+.+-|..++..+..|.++
T Consensus 30 Il~~L~~-~~~~v~eLa~~l~is-~stvS~HL~~L~~aGlV~~~k~Gr~~~Y~l 81 (108)
T 2kko_A 30 ILDLLAQ-GERAVEAIATATGMN-LTTASANLQALKSGGLVEARREGTRQYYRI 81 (108)
T ss_dssp HHHHHTT-CCEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEEEEETTEEEEEE
T ss_pred HHHHHHC-CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEEECCEEEEEE
T ss_conf 9999981-997899999998909-999999999999889227998889999998
No 18
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=56.69 E-value=8 Score=19.03 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=38.8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 78999999761788447888988848980046886431441268135
Q T0559 10 ALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 10 ~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
..--+|=++|.+|+..|+++|++++|++ ...+..-+-.|-.++=|.
T Consensus 9 ~~D~~IL~~L~~d~R~s~~~iA~~lgls-~~tv~~Ri~rL~~~GvI~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNTT-RQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHCCCCCE
T ss_conf 9999999999885999999999998969-999999999984055210
No 19
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=56.27 E-value=9.5 Score=18.63 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 78999999761788447888988848980046886431441268135
Q T0559 10 ALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 10 ~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
..--+|=++|.+|+..|+.+|.+++|++ ...+..-|-=|-.++=|.
T Consensus 17 ~~D~~IL~~L~~d~R~s~~eIA~~lglS-~~tV~~Ri~rLe~~GvI~ 62 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLKKP-ESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 9999999999984899999999998909-999999999999689747
No 20
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding protein, DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli B} SCOP: a.4.2.1 c.55.7.1
Probab=56.26 E-value=8.7 Score=18.83 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999976178---8447888988848980046886431441268135
Q T0559 13 GQIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 13 G~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
-+||++|.+- ...||++|.+..+.+. -..|+|==...|.|.
T Consensus 99 ~~Vw~aL~~IP~G~t~SY~~lA~~ig~p~---a~RAVg~A~~~Npi~ 142 (180)
T 1sfe_A 99 QQVWQALRTIPCGETVSYQQLANAIGKPK---AVRAVASACAANKLA 142 (180)
T ss_dssp HHHHHHHTTSCTTCCEEHHHHHHHTTCTT---CHHHHHHHHHTCCBB
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCC---CHHHHHHHHHHCCCC
T ss_conf 99999986521674015999999839997---269999999858998
No 21
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=55.90 E-value=11 Score=18.34 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=34.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 99999761788447888988848980046886431441268135
Q T0559 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 13 G~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
-+|=++|.+|+..|+++|++++|++ ...+..-+.=|-.++=|.
T Consensus 6 ~~Il~~L~~d~r~s~~~ia~~~g~s-~~tv~~Ri~rL~~~GvI~ 48 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIP-KATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCCC
T ss_conf 9999999983899999999998919-999999999999689823
No 22
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=48.06 E-value=16 Score=17.49 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 9999761788447888988848980046886431441268135764077388875
Q T0559 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKL 68 (69)
Q Consensus 14 ~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v~L 68 (69)
.|-..|.+.++.+.++|.+.++++ -..+-.-+.-| |.+=|..++.....|-++
T Consensus 31 ~Il~~L~~~~~~~v~ela~~l~~s-~stvS~HL~~L-~aglV~~~r~G~~~~Y~l 83 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLP-QSTVSQHLCKM-RGKVLKRNRQGLEIYYSI 83 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCC-HHHHHHHHHHH-BTTTBEEEEETTEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHH-HHCCCEEEEECCEEEEEE
T ss_conf 999999647990599999998858-76899999999-829734898758899998
No 23
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=45.80 E-value=12 Score=18.19 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=33.4
Q ss_pred HHHHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 99999976178---8447888988848980046886431441268135
Q T0559 12 AGQIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 12 AG~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
.-+||.++..- .-.||.+|.+..|.+ - -+.|+||-.+.|...
T Consensus 5 ~~~V~~~v~~IP~G~v~TYg~iA~~~G~p-~--~aRaVG~al~~np~~ 49 (108)
T 2kif_A 5 LVQIFAVIHQIPKGKVSTYGEIAKMAGYP-G--YARHVGKALGNLPEG 49 (108)
T ss_dssp HHHHHHHHTTCCTTCBEEHHHHHHHHTCT-T--CHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHCCCC-C--CHHHHHHHHHHCCCC
T ss_conf 99999999568999759799999980998-2--168999999838988
No 24
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=44.99 E-value=18 Score=17.23 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECC---EEEEEE
Q ss_conf 777678999999761-788447888988848980046886431441268135764077---388875
Q T0559 6 EKAGALAGQIWEALN-GTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEG---EIFVKL 68 (69)
Q Consensus 6 ~~IG~nAG~IW~~L~-e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~g---el~v~L 68 (69)
.-+....|.|+.+|- .++++|+++|.+.++++ -.-+..++-=|.+.+=|......+ ..|+.+
T Consensus 22 ~Gl~~~~~~v~~~L~~~~~p~t~~eLa~~l~is-ks~vs~~l~~L~~~GlV~r~~~~~drr~~~~~~ 87 (152)
T 1ku9_A 22 HGLNKSVGAVYAILYLSDKPLTISDIMEELKIS-KGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp TTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEE
T ss_conf 197999999999999769896999999784866-514999999999889989852898887468777
No 25
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=44.82 E-value=16 Score=17.50 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=29.6
Q ss_pred HHHHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99999976178---84478889888489800468864314412681357
Q T0559 12 AGQIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 12 AG~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
--+||+.|..- ...||++|.+..+-. ..|+|--.+.|.|.+
T Consensus 73 Q~~Vw~~L~~IP~G~t~TY~elA~~~~~a-----~RAVg~A~~~Npi~i 116 (156)
T 1wrj_A 73 RIRVFKEVMRIKWGEVRTYKQVADAVKTS-----PRAVGTALSKNNVLL 116 (156)
T ss_dssp HHHHHHHHTTSCTTCCEEHHHHHHHTTSC-----HHHHHHHHHTCSBTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHCCCCC
T ss_conf 99999998419825533399999982303-----899999999538988
No 26
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=43.14 E-value=19 Score=17.07 Aligned_cols=54 Identities=19% Similarity=0.017 Sum_probs=43.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 9999761788447888988848980046886431441268135764077388875
Q T0559 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKL 68 (69)
Q Consensus 14 ~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v~L 68 (69)
.|-..|...++.+.++|...++++ -..+-.-+-=|...+=|..++.....|.+|
T Consensus 46 ~Il~~L~~~~~~~v~ela~~l~is-~~~vS~HL~~L~~~GlV~~~r~Gr~~~Y~l 99 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVT-IANASHHLRTLYKQGVVNFRKEGKLALYSL 99 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEC----CCEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCEEEEEEECCEEEEEE
T ss_conf 999999887990699999888457-007999999999889258999888999998
No 27
>1qnt_A Methylated-DNA--protein-cysteine methyltransferase; DNA repair, alkyltransferase; 1.9A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1yfh_A* 1t39_A* 1t38_A*
Probab=42.70 E-value=15 Score=17.68 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999976178---8447888988848980046886431441268135
Q T0559 14 QIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 14 ~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
.||++|.+- ...||++|.+..|-+ . -..|+|=-...|.|.
T Consensus 98 ~VW~aL~~IP~G~t~SY~~lA~~iG~p-~--a~RAVg~A~~~NPi~ 140 (176)
T 1qnt_A 98 VLWKLLKVVKFGEVISYQQLAALAGNP-K--AARAVGGAMRGNPVP 140 (176)
T ss_dssp HHHHHHHHCCTTCCEEHHHHHHHTTCT-T--CHHHHHHHHTTCSSB
T ss_pred HHHHHHCCCCCCEEEEHHHHHHHHCCC-C--HHHHHHHHHHHCCCC
T ss_conf 999975149994470199999983899-7--799999999868998
No 28
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4}
Probab=41.56 E-value=20 Score=16.94 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHCCCC-------CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 77678999999761788-------447888988848980046886431441268135764
Q T0559 7 KAGALAGQIWEALNGTE-------GLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSE 59 (69)
Q Consensus 7 ~IG~nAG~IW~~L~e~~-------~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e 59 (69)
.+...|.+|-..|.+++ +-+-.++++..+++ -+-.=.|||=|.++.||.+++
T Consensus 221 ~~~~~~e~il~~l~~~~G~l~~~dkS~pe~I~~~f~~S-K~~fK~aiG~L~k~~~I~~~~ 279 (285)
T 3go5_A 221 MLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGIS-KGQFKKALGGLMKAGKIKQDQ 279 (285)
T ss_dssp CCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSC-HHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCEEEECC
T ss_conf 55558999999999759934279999999999997919-999999877876387499919
No 29
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens}
Probab=39.92 E-value=19 Score=17.12 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999761788447888988848980046886431441268135764077
Q T0559 11 LAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEG 62 (69)
Q Consensus 11 nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~g 62 (69)
+-.+|.++|-..++-+.-.|.|..|++.-+|+..-+==|-|...+.+.++..
T Consensus 11 ~kEkI~~fL~~~gp~~AL~IAKnlGl~tAkdVN~~Ly~lekqhll~~d~k~~ 62 (72)
T 3eyi_A 11 REEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSK 62 (72)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECTTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 6999999999669925889999858111777568999999742777668867
No 30
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=37.74 E-value=23 Score=16.61 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE--EECCEEEE
Q ss_conf 7899999976178844788898884898004688643144126813576--40773888
Q T0559 10 ALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTS--EVEGEIFV 66 (69)
Q Consensus 10 ~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~--e~~gel~v 66 (69)
.+--.|..+|.++++.+..+|.+.++++ -..+..+|-=|...+=|.-. +.++--|+
T Consensus 20 ~~e~~v~~~L~~~~~~t~~eia~~~~~~-~~~v~~~l~~L~~~Glv~r~~~~~~~~~~~ 77 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDLS-ARFVRDRLKVLLKRGFVRREIVEKGWVGYI 77 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEEESSSEEEE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 9999999999804888799999997567-018999999999599979874257886554
No 31
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=37.32 E-value=21 Score=16.90 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=32.4
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 999976178844788898884898004688643144126813
Q T0559 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKV 55 (69)
Q Consensus 14 ~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI 55 (69)
+|=+.|.+|+..|+.+|.+.+|++ ...+..-|.=|-.++=|
T Consensus 8 ~il~~L~~~~r~s~~~ia~~~gls-~~~v~~Ri~~L~~~GvI 48 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGII 48 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCC
T ss_conf 999999985898999999998909-99999999998606961
No 32
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=36.89 E-value=24 Score=16.54 Aligned_cols=51 Identities=8% Similarity=-0.063 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 7899999976178844788898884898004688643144126813576407
Q T0559 10 ALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVE 61 (69)
Q Consensus 10 ~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~ 61 (69)
..--.|+++-.+++..+.++|.+..+.+ -..+..++..|..++=|..+...
T Consensus 40 dYLe~Iy~L~~~~~~vr~~dIA~~L~vs-~~sV~~~l~~L~~~GlI~~~~~~ 90 (155)
T 2h09_A 40 DYVELISDLIREVGEARQVDMAARLGVS-QPTVAKMLKRLATMGLIEMIPWR 90 (155)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHTSC-HHHHHHHHHHHHHTTCEEEETTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEECCCC
T ss_conf 9999999999628976099999996988-77999999999878997765998
No 33
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=35.87 E-value=19 Score=17.10 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=38.0
Q ss_pred HHHHHHHHCCCC---CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999999761788---447888988848980046886431441268135764
Q T0559 12 AGQIWEALNGTE---GLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSE 59 (69)
Q Consensus 12 AG~IW~~L~e~~---~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e 59 (69)
--+|-.+|.+.+ ..+..+|.|..+++ -++++.++==|.+++++.-+.
T Consensus 16 e~kIl~~L~~~g~g~~~tA~~LAk~lg~~-Kk~vN~~LY~L~k~g~v~~~~ 65 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEECC
T ss_conf 99999999965898760299999996988-888899999999878953069
No 34
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=35.13 E-value=26 Score=16.38 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.6
Q ss_pred HHHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999976178---8447888988848980046886431441268135
Q T0559 13 GQIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 13 G~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
-+||++|.+- ...||.+|.+..+-+ ..|+|.-.+.|.+.
T Consensus 82 ~~V~~~l~~Ip~G~~~TYg~iA~~~g~~-----~RaVg~A~~~Np~~ 123 (167)
T 2g7h_A 82 KKVLDIVKDIEFGKTLTYGDIAKKLNTS-----PRAVGMALKRNPLP 123 (167)
T ss_dssp HHHHHHHTTCCTTCCEEHHHHHHHHTSC-----HHHHHHHHHTCSCT
T ss_pred HHHHHHHHCCCCCCEECHHHHHHHCCCC-----HHHHHHHHHCCCCC
T ss_conf 9999999669997738589999776975-----67999997519998
No 35
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=32.17 E-value=29 Score=16.12 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHHHHCC-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEE
Q ss_conf 9999997617-884478889888489800468864314412681357640773888
Q T0559 12 AGQIWEALNG-TEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFV 66 (69)
Q Consensus 12 AG~IW~~L~e-~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v 66 (69)
.-.|=.++.+ ..+.+..+|.+.++++ ..++-.++-=|.-.++|..-..++..|+
T Consensus 4 ~e~l~~~l~~~~~gl~~~el~~~~~l~-~~~~~~~L~~L~~~g~v~~~~~~~~~~~ 58 (135)
T 2v9v_A 4 EKILAQIIQEHREGLDWQEAATRASLS-LEETRKLLQSMAAAGQVTLLRVENDLYA 58 (135)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTCEEEEEETTEEEE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEECCCCEEE
T ss_conf 999999998576897999999894959-9999999999974897899951796589
No 36
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=30.61 E-value=28 Score=16.23 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 8447888988848980046886431441268135
Q T0559 23 EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 23 ~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
.+.++++|.+.++++ .+++-..+..|+++++|.
T Consensus 19 ~Pp~v~dla~~l~~~-~~~~~~~L~~l~~~G~lv 51 (121)
T 2pjp_A 19 EPWWVRDLAKETGTD-EQAMRLTLRQAAQQGIIT 51 (121)
T ss_dssp SCEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCEEE
T ss_conf 999799999997929-999999999999799489
No 37
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=28.06 E-value=35 Score=15.73 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=41.3
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 99761788447888988848980046886431441268135764077388875
Q T0559 16 WEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKL 68 (69)
Q Consensus 16 W~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v~L 68 (69)
-.+|. +++.+.++|.+.++++ -..+-.-+.-|.+.|=|..++.....|-+|
T Consensus 29 l~~L~-~~~~~v~ela~~l~is-~~tvS~HL~~L~~aglV~~~r~G~~~~Y~l 79 (98)
T 3jth_A 29 LCMLH-NQELSVGELCAKLQLS-QSALSQHLAWLRRDGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp HHHTT-TSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCTTCCEEEE
T ss_pred HHHHH-CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEEECCEEEEEE
T ss_conf 99998-1996799999998929-889999999999889536998878999998
No 38
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.96 E-value=35 Score=15.72 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 9641677767899999976178844788898884898
Q T0559 1 MKMLKEKAGALAGQIWEALNGTEGLTQKQIKKATKLK 37 (69)
Q Consensus 1 ~~M~k~~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~ 37 (69)
|+.+.+.||. .|..+..+ .++|..+|++.+|++
T Consensus 1 M~~~~~~i~~---~l~~lr~~-~g~s~~~LA~~~Gvs 33 (78)
T 3b7h_A 1 MKTDGEFVSE---HLMELITQ-QNLTINRVATLAGLN 33 (78)
T ss_dssp CCCHHHHHHH---HHHHHHHH-TTCCHHHHHHHHTCC
T ss_pred CCCHHHHHHH---HHHHHHHH-CCCCHHHHHHHHCCC
T ss_conf 9847999999---99999999-499899999998929
No 39
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=24.93 E-value=11 Score=18.38 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999999761788447888988848980046886431441268135
Q T0559 12 AGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 12 AG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
-=+|=++|.+|+..|+.+|++++|++ ...+..-+--|-.++=|.
T Consensus 15 D~~Il~~L~~d~R~s~~eia~~lglS-~~tv~~Ri~rL~~~GiI~ 58 (163)
T 2gqq_A 15 DRNILNELQKDGRISNVELSKRVGLS-PTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp HHHHHHHHHHCSSCCTTGGGTSSSCC-TTTSSSTHHHHHHHTSEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 99999999974898999999998949-999999999998479346
No 40
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=24.21 E-value=25 Score=16.43 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 416777678999999761788-44788898884898004688643144126813576407
Q T0559 3 MLKEKAGALAGQIWEALNGTE-GLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVE 61 (69)
Q Consensus 3 M~k~~IG~nAG~IW~~L~e~~-~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~ 61 (69)
|-++..|..|-.|.++|-+.+ ..+-.+|+..++++ -+++-..+.=|..++=|..++..
T Consensus 11 iv~~~~G~~a~~i~~~L~~~~~~l~ee~la~~~~i~-~k~vR~iL~~L~~~~lv~~~r~~ 69 (110)
T 1q1h_A 11 LAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIK-VNDVRKKLNLLEEQGFVSYRKTR 69 (110)
T ss_dssp HHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSC-HHHHHHHHHHHHHHTSCEEEEEC
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999980969999999999869887899999895999-99999999999986972403401
No 41
>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89}
Probab=23.55 E-value=42 Score=15.27 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEC---CEEEEEE
Q ss_conf 899999976178844788898884898004688643144126813576407---7388875
Q T0559 11 LAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVE---GEIFVKL 68 (69)
Q Consensus 11 nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~---gel~v~L 68 (69)
..-.|=..|.++++.+.++|.+.++++ -..+...+..|.+.+=|...... +..+++|
T Consensus 32 ~~~~iL~~l~~~~~~t~~ela~~l~~~-~~~vs~~v~~L~~~G~i~r~~~~~D~R~~~i~l 91 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERLQID-RAAVTRHLKLLEESGYIIRKRNPDNQREVLVWP 91 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHC
T ss_conf 999999999887998999999998979-879999999999789978711887677212206
No 42
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.46 E-value=43 Score=15.26 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=35.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 999976178844788898884898004688643144126813576
Q T0559 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTS 58 (69)
Q Consensus 14 ~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~ 58 (69)
.+++.+-.++.-++.++...++++ ..++..+++.|++-+-+...
T Consensus 168 ~~l~~~l~~~~~t~eela~~l~~~-~~~V~~~l~~l~~~g~~~~~ 211 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNLK-EREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTCC-HHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCCEEE
T ss_conf 999872415856689999886949-89999999998720640473
No 43
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1eh7_A 1eh8_A*
Probab=21.51 E-value=40 Score=15.41 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 999976178---84478889888489800468864314412681357
Q T0559 14 QIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 14 ~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
.||++|.+- ...||.+|.+..+-+ + -..|+|=-.+.|.|.+
T Consensus 98 ~VW~~L~~IP~Get~TY~~lA~~iG~p--~-aaRAVG~A~g~NPi~i 141 (207)
T 1eh6_A 98 VLWKLLKVVKFGEVISYQQLAALAGNP--K-AARAVGGAMRGNPVPI 141 (207)
T ss_dssp HHHHHHHHCCTTCCEEHHHHHHHTTCT--T-CHHHHHHHTTSCSSBT
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHCCC--C-HHHHHHHHHHHCCCCC
T ss_conf 999999569997511199999996899--6-5999999998289865
No 44
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.43 E-value=19 Score=17.09 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHH
Q ss_conf 41677767899999976178844788898884898004688
Q T0559 3 MLKEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFF 43 (69)
Q Consensus 3 M~k~~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~ 43 (69)
|.-..|...+|..|+.|++...--|.++.....-.-+++.+
T Consensus 46 ~~~~eisk~l~~~Wk~Ls~~eK~~y~~~A~~~k~~y~~~~~ 86 (90)
T 1wgf_A 46 LSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 85899999999999969999999999999999999999743
No 45
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA complex, gene regulation/DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=20.14 E-value=50 Score=14.88 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
Q ss_conf 6416777678999999761788447888988848
Q T0559 2 KMLKEKAGALAGQIWEALNGTEGLTQKQIKKATK 35 (69)
Q Consensus 2 ~M~k~~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~ 35 (69)
.|....|....|..|+.|++...--|.+..+...
T Consensus 28 ~~~~~ev~k~l~~~Wk~ls~~eK~~y~~~a~~~k 61 (71)
T 1ckt_A 28 SVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 61 (71)
T ss_dssp CCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8989999999999884299999999999999999
Done!