Query T0559 BvR153, , 69 residues
Match_columns 69
No_of_seqs 48 out of 50
Neff 3.6
Searched_HMMs 15564
Date Tue May 25 15:37:32 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0559.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0559.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1biaa1 a.4.5.1 (A:1-63) Bioti 79.9 1.7 0.00011 21.6 4.9 50 11-62 6-55 (63)
2 d1z05a1 a.4.5.63 (A:10-80) Tra 79.2 1.2 7.7E-05 22.5 3.9 48 9-57 5-52 (71)
3 d1dpua_ a.4.5.16 (A:) C-termin 79.1 1.5 9.7E-05 22.0 4.4 54 11-66 7-64 (69)
4 d1z6ra1 a.4.5.63 (A:12-81) Mlc 75.3 2.3 0.00015 21.0 4.4 47 9-56 4-50 (70)
5 d2cfxa1 a.4.5.32 (A:1-63) Tran 64.3 4.3 0.00027 19.6 3.9 50 1-56 1-50 (63)
6 d1xmka1 a.4.5.19 (A:294-366) Z 63.1 3.3 0.00021 20.2 3.1 50 10-59 5-54 (73)
7 d1sfea1 a.4.2.1 (A:93-176) Ada 60.9 3.2 0.00021 20.2 2.8 42 13-57 6-50 (84)
8 d1i1ga1 a.4.5.32 (A:2-61) LprA 57.5 4.4 0.00028 19.5 3.0 42 14-56 7-48 (60)
9 d1u2wa1 a.4.5.5 (A:12-119) Cad 57.0 7.7 0.00049 18.3 4.3 54 14-68 35-88 (108)
10 d1ub9a_ a.4.5.28 (A:) Hypothet 56.1 8 0.00051 18.2 4.9 56 12-68 18-76 (100)
11 d1qnta1 a.4.2.1 (A:92-176) O6- 52.8 4.9 0.00032 19.3 2.6 41 14-57 7-50 (85)
12 d2cyya1 a.4.5.32 (A:5-64) Puta 52.2 6 0.00039 18.8 3.0 42 14-56 7-48 (60)
13 d2cg4a1 a.4.5.32 (A:4-66) Regu 48.1 9.5 0.00061 17.8 3.4 43 13-56 8-50 (63)
14 d1ldja3 e.40.1.1 (A:411-686) C 43.6 12 0.0008 17.2 3.5 45 12-58 197-241 (276)
15 d1lvaa3 a.4.5.35 (A:511-574) C 39.5 15 0.00096 16.8 3.4 44 13-57 10-55 (64)
16 d1mgta1 a.4.2.1 (A:89-169) O6- 37.1 13 0.00084 17.1 2.7 40 13-57 6-49 (81)
17 d1biaa1 a.4.5.1 (A:1-63) Bioti 36.7 17 0.0011 16.5 5.0 41 13-54 8-48 (63)
18 d1sfua_ a.4.5.19 (A:) 34L {Yab 35.7 18 0.0011 16.4 3.6 53 8-61 8-60 (70)
19 d1ldja3 e.40.1.1 (A:411-686) C 32.3 19 0.0012 16.2 3.0 43 13-57 198-240 (276)
20 d3e5ua1 a.4.5.4 (A:148-227) Ch 31.3 20 0.0013 16.1 3.0 36 24-60 30-65 (80)
21 d2ev0a1 a.4.5.24 (A:2-62) Mang 30.7 21 0.0014 16.0 3.6 50 12-62 9-58 (61)
22 d1ft9a1 a.4.5.4 (A:134-213) CO 29.5 23 0.0014 15.9 3.1 37 24-61 30-66 (80)
23 d1sfxa_ a.4.5.50 (A:) Hypothet 26.5 26 0.0016 15.6 4.9 48 10-58 20-67 (109)
24 d1mgta1 a.4.2.1 (A:89-169) O6- 22.5 30 0.0019 15.2 2.5 39 13-56 6-48 (81)
25 d3ctaa1 a.4.5.28 (A:5-89) Ta10 20.5 34 0.0022 14.9 4.8 48 20-68 17-64 (85)
No 1
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1biba1 d2ewna1 d1hxda1
Probab=79.93 E-value=1.7 Score=21.64 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999999761788447888988848980046886431441268135764077
Q T0559 11 LAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEG 62 (69)
Q Consensus 11 nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~g 62 (69)
..=+|..+|.+++.+|.++|.+..+.+ ...+...|-.|-.++ +.++...|
T Consensus 6 ~~~~IL~~L~~~~~~s~~eLa~~l~vS-~~Tv~r~i~~L~~~G-~~i~s~~g 55 (63)
T d1biaa1 6 VPLKLIALLANGEFHSGEQLGETLGMS-RAAINKHIQTLRDWG-VDVFTVPG 55 (63)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSC-HHHHHHHHHHHHHTT-CCCEEETT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCC-CCHHHHHHHHHHHCC-CEEEEECC
T ss_conf 889999999828983778999870999-835789999998769-81673269
No 2
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=79.23 E-value=1.2 Score=22.47 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 6789999997617884478889888489800468864314412681357
Q T0559 9 GALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 9 G~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
-.|+..|-++|..+++.|..+|.+.++++ -..+..-+.=|..++-|.-
T Consensus 5 ~~N~~~Il~~l~~~g~~sr~eLa~~~glS-~~Tv~~~l~~L~~~Glv~e 52 (71)
T d1z05a1 5 QINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITRELIDAHLIHE 52 (71)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999985994899999998878-8789999999998898797
No 3
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.12 E-value=1.5 Score=21.96 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=41.1
Q ss_pred HHHHHHHHHCC---CCCCCHHHHHHHH-CCCCCHHHHHHHHHHHCCCEEEEEEECCEEEE
Q ss_conf 89999997617---8844788898884-89800468864314412681357640773888
Q T0559 11 LAGQIWEALNG---TEGLTQKQIKKAT-KLKADKDFFLGLGWLLREDKVVTSEVEGEIFV 66 (69)
Q Consensus 11 nAG~IW~~L~e---~~~~s~~~Lkk~t-~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v 66 (69)
.+-+|++++.. ..+.++.+|++.. +++ ..++..|+-+|.-|+.|+. -.+..-|-
T Consensus 7 ~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~-~~~i~~aid~L~~eG~IYs-TiDddHfk 64 (69)
T d1dpua_ 7 AQNQVLNLIKACPRPEGLNFQDLKNQLKHMS-VSSIKQAVDFLSNEGHIYS-TVDDDHFK 64 (69)
T ss_dssp HHHHHHHHHHHCCCTTTEEHHHHHHHSTTSC-HHHHHHHHHHHHHTTSEEE-CSSTTEEE
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC-HHHHHHHHHHHHHCCCEEC-CCCCCHHC
T ss_conf 9999999998388856838999998816999-9999999999983785551-03654110
No 4
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=75.31 E-value=2.3 Score=21.04 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 678999999761788447888988848980046886431441268135
Q T0559 9 GALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 9 G~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
..|...|-++|.++++.|-.+|.+.++|+ -..+...+-=|..++-|.
T Consensus 4 ~~N~~~Il~~i~~~g~~sr~eLa~~~gLS-~~Tvs~iv~~L~~~glv~ 50 (70)
T d1z6ra1 4 QTNAGAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVHEMLEAHLVQ 50 (70)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 78999999999994992899999998949-999999999999889978
No 5
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=64.31 E-value=4.3 Score=19.62 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 96416777678999999761788447888988848980046886431441268135
Q T0559 1 MKMLKEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 1 ~~M~k~~IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
|+||.-. -+|=++|.+|+..|+.+|.+.+|++ ..++..-|-.|-.++=|.
T Consensus 1 mklD~~D-----~~IL~~L~~n~r~s~~~iA~~lgis-~~tv~~Ri~~L~~~giI~ 50 (63)
T d2cfxa1 1 MKLDQID-----LNIIEELKKDSRLSMRELGRKIKLS-PPSVTERVRQLESFGIIK 50 (63)
T ss_dssp CCCCHHH-----HHHHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHH-----HHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 9878999-----9999999983999999999998968-789999999999889856
No 6
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.13 E-value=3.3 Score=20.19 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 78999999761788447888988848980046886431441268135764
Q T0559 10 ALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSE 59 (69)
Q Consensus 10 ~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e 59 (69)
..-.+|-.+|-+.++-+.-.|.+..|++.-+|+..++==|.|.+++.-+.
T Consensus 5 d~eekI~~~L~~~g~~~Al~iak~lGl~kakeVN~~LY~L~k~g~v~k~~ 54 (73)
T d1xmka1 5 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQG 54 (73)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCC
T ss_conf 89999999999759843999999949970788759999999877801279
No 7
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=60.93 E-value=3.2 Score=20.24 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=34.3
Q ss_pred HHHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9999976178---84478889888489800468864314412681357
Q T0559 13 GQIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 13 G~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
-+||+.|.+- ...||.+|.+..+.+ . -..|+|+-.+.|.+.+
T Consensus 6 ~~V~~~l~~Ip~G~v~TYg~iA~~~g~~-~--a~RaVg~a~~~Np~~~ 50 (84)
T d1sfea1 6 QQVWQALRTIPCGETVSYQQLANAIGKP-K--AVRAVASACAANKLAI 50 (84)
T ss_dssp HHHHHHHTTSCTTCCEEHHHHHHHTTCT-T--CHHHHHHHHHTCCBBT
T ss_pred HHHHHHHHCCCCCCEEEHHHHHHHHCCC-C--CHHHHHHHHHCCCCCC
T ss_conf 9999999749998736299999981886-5--1999999996099877
No 8
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=57.46 E-value=4.4 Score=19.54 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=34.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999761788447888988848980046886431441268135
Q T0559 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 14 ~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
+|=++|.+|+..|+.+|++++|++ ...+..-|-=|-.++=|.
T Consensus 7 kIl~~L~~n~r~s~~~lA~~~gls-~~~v~~Ri~~L~~~giI~ 48 (60)
T d1i1ga1 7 IILEILEKDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGIIE 48 (60)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 999999884999999999998929-999999999999889757
No 9
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=57.03 E-value=7.7 Score=18.29 Aligned_cols=54 Identities=19% Similarity=0.017 Sum_probs=44.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 9999761788447888988848980046886431441268135764077388875
Q T0559 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKL 68 (69)
Q Consensus 14 ~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v~L 68 (69)
.|-..|...++.+..+|...++++ -..+---+.-|.+.|=|..++.....|-+|
T Consensus 35 ~Il~~L~~~~~~~v~ela~~l~~s-~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l 88 (108)
T d1u2wa1 35 KITYALCQDEELCVCDIANILGVT-IANASHHLRTLYKQGVVNFRKEGKLALYSL 88 (108)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEC----CCEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCEEEEEEECCEEEEEE
T ss_conf 999999868991499999888557-257999999999889458998888899998
No 10
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=56.10 E-value=8 Score=18.20 Aligned_cols=56 Identities=21% Similarity=0.080 Sum_probs=44.8
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEE---CCEEEEEE
Q ss_conf 9999997617884478889888489800468864314412681357640---77388875
Q T0559 12 AGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEV---EGEIFVKL 68 (69)
Q Consensus 12 AG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~---~gel~v~L 68 (69)
-=.|=.+|..+++.++++|++..+++ ..-+...+.-|-+.|=|..+.. .+..+++|
T Consensus 18 r~~IL~~L~~~~~~~~~eLa~~l~is-~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~L 76 (100)
T d1ub9a_ 18 RLGIMIFLLPRRKAPFSQIQKVLDLT-PGNLDSHIRVLERNGLVKTYKVIADRPRTVVEI 76 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHHCCCCCEEHHHHHHHHHHC-CCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCC
T ss_conf 99999876047990199999998625-432309999882310368887576776534557
No 11
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.81 E-value=4.9 Score=19.30 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHHCCC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 999976178---84478889888489800468864314412681357
Q T0559 14 QIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 14 ~IW~~L~e~---~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
.||++|..- ...||.+|.+..+.+ - -+.|+|+-.+.|.+.+
T Consensus 7 ~vw~~l~~IP~G~v~TYg~iA~~~g~p-~--aaRaVg~a~~~Np~~~ 50 (85)
T d1qnta1 7 VLWKLLKVVKFGEVISYQQLAALAGNP-K--AARAVGGAMRGNPVPI 50 (85)
T ss_dssp HHHHHHHHCCTTCCEEHHHHHHHTTCT-T--CHHHHHHHHTTCSSBT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCCC-C--HHHHHHHHHHHCCCCC
T ss_conf 999999269999836399999773776-4--1899999998099877
No 12
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=52.19 E-value=6 Score=18.83 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=34.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9999761788447888988848980046886431441268135
Q T0559 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 14 ~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
+|=+.|.+|+..|+.+|.+.++++ ...+..-+--|-.++=|.
T Consensus 7 ~Il~~L~~n~r~s~~eiA~~l~ls-~~~v~~Ri~~L~~~giI~ 48 (60)
T d2cyya1 7 KIIKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIK 48 (60)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 999999982899999999998939-999999999999889747
No 13
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=48.07 E-value=9.5 Score=17.82 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 99999761788447888988848980046886431441268135
Q T0559 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 13 G~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
-+|=+.|.+++..|+.+|.+.++++ ...+..-+-=|-.++=|.
T Consensus 8 ~~IL~~L~~~~r~s~~eiA~~l~ls-~~~v~~Ri~rL~~~GiI~ 50 (63)
T d2cg4a1 8 RGILEALMGNARTAYAELAKQFGVS-PETIHVRVEKMKQAGIIT 50 (63)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
T ss_conf 9999999983899999999998939-999999999999889857
No 14
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1u6ga3
Probab=43.57 E-value=12 Score=17.20 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=35.8
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999976178844788898884898004688643144126813576
Q T0559 12 AGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTS 58 (69)
Q Consensus 12 AG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~ 58 (69)
...|=-+.|+...+|+.+|...|+++ +.++-.++..|.+. ||.+.
T Consensus 197 Qa~ILllFN~~~~lt~~~l~~~~~i~-~~~l~~~L~~L~~~-kil~~ 241 (276)
T d1ldja3 197 QMAILLQYNTEDAYTVQQLTDSTQIK-MDILAQVLQILLKS-KLLVL 241 (276)
T ss_dssp HHHHHHGGGSSSEEEHHHHHHHTCCC-HHHHHHHHHHHHHT-TTEEC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHC-CEEEE
T ss_conf 99999986289974778999885889-98999998887518-82664
No 15
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=39.53 E-value=15 Score=16.78 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=35.0
Q ss_pred HHHHHHHCCC--CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9999976178--84478889888489800468864314412681357
Q T0559 13 GQIWEALNGT--EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 13 G~IW~~L~e~--~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
.+|-.++.+. .+.+.+++...++++ ++++-.-+..|+|++.+.=
T Consensus 10 ~~I~~~~~~~g~~PP~vrdl~~~l~~~-e~~~~~lL~~l~~~G~lvk 55 (64)
T d1lvaa3 10 KDLEDKYRVSRWQPPSFKEVAGSFNLD-PSELEELLHYLVREGVLVK 55 (64)
T ss_dssp HHHHHHHHHHTTSCCBHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEE
T ss_conf 999999998699999599999891999-9999999999997897798
No 16
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=37.05 E-value=13 Score=17.10 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=29.8
Q ss_pred HHHHHHHCC----CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 999997617----884478889888489800468864314412681357
Q T0559 13 GQIWEALNG----TEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 13 G~IW~~L~e----~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
-.||+.|.. ....||.+|.+..+.+ ..|+|+-.+.|.+.+
T Consensus 6 ~~V~~~l~~~IP~G~v~TYg~iA~~~g~~-----~RaVg~a~~~Np~~~ 49 (81)
T d1mgta1 6 KKVYEWLTKNVKRGSVITYGDLAKALNTS-----PRAVGGAMKRNPYPI 49 (81)
T ss_dssp HHHHHHHHHHSCTTCCEEHHHHHHHTTSC-----HHHHHHHHHTCSCTT
T ss_pred HHHHHHHHHHCCCCCEEEHHHHHHHCCCC-----HHHHHHHHHHCCCCC
T ss_conf 99999999768999807499999883974-----799999998599744
No 17
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.71 E-value=17 Score=16.52 Aligned_cols=41 Identities=10% Similarity=-0.061 Sum_probs=35.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCE
Q ss_conf 999997617884478889888489800468864314412681
Q T0559 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDK 54 (69)
Q Consensus 13 G~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~K 54 (69)
=+|-.+|.+++.+|.++|.+..+.+ ...+...|-=|-.++=
T Consensus 8 ~~iL~~L~~~~~~s~~eLa~~l~vS-~~ti~r~i~~L~~~G~ 48 (63)
T d1biaa1 8 LKLIALLANGEFHSGEQLGETLGMS-RAAINKHIQTLRDWGV 48 (63)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCC
T ss_conf 9999999978958799999998939-9999999999998799
No 18
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=35.70 E-value=18 Score=16.43 Aligned_cols=53 Identities=21% Similarity=0.098 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 767899999976178844788898884898004688643144126813576407
Q T0559 8 AGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVE 61 (69)
Q Consensus 8 IG~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~ 61 (69)
|=+---++-..|.+++..+..+|.+..|++ -+|+..++==|.|.+++.-+...
T Consensus 8 i~~lvk~~l~~L~~~~~~tA~~LAk~Lg~~-Kk~VNr~LY~L~~~G~v~~~~~t 60 (70)
T d1sfua_ 8 IFSLVKKEVLSLNTNDYTTAISLSNRLKIN-KKKINQQLYKLQKEDTVKMVPSN 60 (70)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHCCC-HHHHHHHHHHHHHCCCEECCCCC
T ss_conf 999999999745877770499999995988-98988999999987985127996
No 19
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.32 E-value=19 Score=16.24 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 999997617884478889888489800468864314412681357
Q T0559 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (69)
Q Consensus 13 G~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~ 57 (69)
..|=-+.|+...+|+.+|...|+++ +.++-..|-.|.+- |+..
T Consensus 198 a~ILllFN~~~~~t~~ei~~~~~i~-~~~l~~~L~~L~~~-kll~ 240 (276)
T d1ldja3 198 MAILLQYNTEDAYTVQQLTDSTQIK-MDILAQVLQILLKS-KLLV 240 (276)
T ss_dssp HHHHHGGGSSSEEEHHHHHHHTCCC-HHHHHHHHHHHHHT-TTEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHC-CEEE
T ss_conf 9999861577765799999987919-99999999999868-9778
No 20
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=31.32 E-value=20 Score=16.11 Aligned_cols=36 Identities=25% Similarity=0.139 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 4478889888489800468864314412681357640
Q T0559 24 GLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEV 60 (69)
Q Consensus 24 ~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~ 60 (69)
++|..+|...+|.+.+ .+..++.-|.+++-|.++..
T Consensus 30 ~lt~~elA~~~g~sre-tvsr~l~~l~~~glI~~~~~ 65 (80)
T d3e5ua1 30 PLSQKSIGEITGVHHV-TVSRVLASLKRENILDKKKN 65 (80)
T ss_dssp CCCHHHHHHHHTCCHH-HHHHHHHHHHHTTSEEC---
T ss_pred CCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEECCC
T ss_conf 7999999999887788-99999999998996996399
No 21
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=30.72 E-value=21 Score=15.98 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=41.8
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 999999761788447888988848980046886431441268135764077
Q T0559 12 AGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEG 62 (69)
Q Consensus 12 AG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~g 62 (69)
=-.|+++..+.+..+.++|++..+.+ ...+.-++.=|++++=|..+.-.|
T Consensus 9 Lk~I~~l~~~~~~v~~~~iA~~L~vs-~~SVs~mikrL~~~GlV~~~~Y~~ 58 (61)
T d2ev0a1 9 IEQIYMLIEEKGYARVSDIAEALAVH-PSSVTKMVQKLDKDEYLIYEKYRG 58 (61)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC----C
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCC-CHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 99999998358975099999995899-515999999998889977706777
No 22
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=29.49 E-value=23 Score=15.86 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 44788898884898004688643144126813576407
Q T0559 24 GLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVE 61 (69)
Q Consensus 24 ~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~ 61 (69)
+.|.++|...+|.+.+ .+..++..|-+|+-|.+....
T Consensus 30 ~~t~~eiA~~lG~sre-tvsr~l~~l~~~g~I~~~~~~ 66 (80)
T d1ft9a1 30 DFTVEEIANLIGSSRQ-TTSTALNSLIKEGYISRQGRG 66 (80)
T ss_dssp CCCHHHHHHHHCSCHH-HHHHHHHHHHHTTSSEECSTT
T ss_pred CCCHHHHHHHHCCCHH-HHHHHHHHHHHCCCEEECCCC
T ss_conf 7899999999798899-999999999988988978999
No 23
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.49 E-value=26 Score=15.57 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 7899999976178844788898884898004688643144126813576
Q T0559 10 ALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTS 58 (69)
Q Consensus 10 ~nAG~IW~~L~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~ 58 (69)
.+-.+|...|.++++.|.++|.+.++++ -..++.++-=|.+.+=|.-.
T Consensus 20 ~~e~~v~~~L~~~g~~t~~eia~~~~i~-~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 20 PSDVRIYSLLLERGGMRVSEIARELDLS-ARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCC-CCHHHHHHHHHHHCCCEEEE
T ss_conf 9999999998823899899999985798-35599999999959987988
No 24
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} SCOP: d1qnta1 d1yfhc1 d1yfhb1 d1t39b1 d1eh6a1 d1eh8a1 d1t38a1 d1sfea1
Probab=22.48 E-value=30 Score=15.22 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=27.9
Q ss_pred HHHHHHHCC----CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999997617----88447888988848980046886431441268135
Q T0559 13 GQIWEALNG----TEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV 56 (69)
Q Consensus 13 G~IW~~L~e----~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~ 56 (69)
-+||+.|-. ....||.+|.+..+.+ ..|+|.-.+.|.+.
T Consensus 6 ~~V~~~l~~~IP~G~v~tYg~iA~~~g~~-----~raVg~al~~np~~ 48 (81)
T d1mgta1 6 KKVYEWLTKNVKRGSVITYGDLAKALNTS-----PRAVGGAMKRNPYP 48 (81)
T ss_dssp HHHHHHHHHHSCTTCCEEHHHHHHHTTSC-----HHHHHHHHHTCSCT
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHCCCC-----HHHHHHHHHCCCCC
T ss_conf 99999998418998504588999770784-----06899998707888
No 25
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=20.46 E-value=34 Score=14.92 Aligned_cols=48 Identities=6% Similarity=0.013 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 1788447888988848980046886431441268135764077388875
Q T0559 20 NGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGEIFVKL 68 (69)
Q Consensus 20 ~e~~~~s~~~Lkk~t~l~~d~el~~AiGWLaRE~KI~~~e~~gel~v~L 68 (69)
++++++|.++|++.++++ -.-+...+.=|-..+=|.-....+..++.|
T Consensus 17 ~~~~~lt~~eLa~~l~i~-~~~vs~~l~~Le~~GlV~r~~D~R~~~i~L 64 (85)
T d3ctaa1 17 SNRAYLTSSKLADMLGIS-QQSASRIIIDLEKNGYITRTVTKRGQILNI 64 (85)
T ss_dssp SSEEECCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEECCCCCCCCEE
T ss_conf 589998899999998878-878999999999879804312455430007
Done!