Query T0560 BtR375, , 74 residues
Match_columns 74
No_of_seqs 57 out of 59
Neff 3.8
Searched_HMMs 22458
Date Tue May 25 15:37:20 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0560.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0560.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2heo_A Z-DNA binding protein 1 89.9 0.23 1E-05 27.4 3.6 46 11-56 13-59 (67)
2 2p5v_A Transcriptional regulat 87.3 0.63 2.8E-05 25.1 4.4 53 1-53 3-55 (162)
3 1sfx_A Conserved hypothetical 85.5 1.9 8.4E-05 22.6 6.1 58 8-65 20-79 (109)
4 1on2_A Transcriptional regulat 83.7 1.4 6.4E-05 23.2 4.8 57 1-57 1-57 (142)
5 2cyy_A Putative HTH-type trans 83.4 0.87 3.9E-05 24.3 3.6 43 11-53 10-52 (151)
6 1z6r_A MLC protein; transcript 82.5 1.9 8.4E-05 22.6 5.0 48 7-54 15-62 (406)
7 3go5_A Multidomain protein wit 82.4 1.6 7.3E-05 22.9 4.7 52 5-56 221-279 (285)
8 2cg4_A Regulatory protein ASNC 80.3 1.6 7.2E-05 22.9 4.1 53 1-53 1-53 (152)
9 2e1c_A Putative HTH-type trans 80.1 1.6 7.2E-05 23.0 4.0 44 10-53 29-72 (171)
10 1ub9_A Hypothetical protein PH 78.9 2.1 9.4E-05 22.3 4.3 48 10-57 18-65 (100)
11 2v9v_A Selenocysteine-specific 78.6 3.8 0.00017 21.0 6.1 58 8-65 2-61 (135)
12 3i4p_A Transcriptional regulat 78.0 2.6 0.00011 21.9 4.5 42 12-53 7-48 (162)
13 1z05_A Transcriptional regulat 76.8 2.9 0.00013 21.6 4.5 47 8-54 39-85 (429)
14 1ku9_A Hypothetical protein MJ 76.3 3.4 0.00015 21.2 4.7 53 5-57 23-76 (152)
15 2w25_A Probable transcriptiona 76.2 3 0.00013 21.5 4.4 44 10-53 9-52 (150)
16 2dbb_A Putative HTH-type trans 76.0 2.5 0.00011 21.9 4.0 46 8-53 9-54 (151)
17 1wrj_A Methylated-DNA--protein 76.0 2.5 0.00011 22.0 4.0 40 11-54 74-116 (156)
18 2ia0_A Putative HTH-type trans 75.3 3.4 0.00015 21.2 4.5 47 7-53 16-62 (171)
19 1xmk_A Double-stranded RNA-spe 73.8 3.5 0.00015 21.2 4.3 50 6-55 9-59 (79)
20 2pn6_A ST1022, 150AA long hypo 73.6 3.9 0.00017 20.9 4.5 43 11-53 6-48 (150)
21 2cfx_A HTH-type transcriptiona 72.3 4.3 0.00019 20.7 4.5 43 11-53 8-50 (144)
22 2h09_A Transcriptional regulat 71.3 3.4 0.00015 21.3 3.7 53 10-63 42-94 (155)
23 1sfe_A ADA O6-methylguanine-DN 68.2 5 0.00022 20.4 4.0 39 11-53 99-142 (180)
24 3cuo_A Uncharacterized HTH-typ 68.0 7.1 0.00032 19.6 6.7 55 12-66 28-82 (99)
25 2g7h_A Methylated-DNA--protein 67.9 5.1 0.00023 20.3 4.0 39 11-53 82-123 (167)
26 2kko_A Possible transcriptiona 67.1 7.4 0.00033 19.5 6.5 54 13-67 30-83 (108)
27 1qnt_A Methylated-DNA--protein 67.1 4.3 0.00019 20.7 3.5 38 12-53 98-140 (176)
28 2zkz_A Transcriptional repress 61.8 9.4 0.00042 18.9 5.6 54 12-66 31-84 (99)
29 1i1g_A Transcriptional regulat 60.6 7 0.00031 19.6 3.6 42 12-53 8-49 (141)
30 1qbj_A Protein (double-strande 59.1 11 0.00047 18.7 5.0 47 10-56 12-61 (81)
31 1mgt_A MGMT, protein (O6-methy 57.3 8 0.00036 19.3 3.5 41 10-54 93-137 (174)
32 1qgp_A Protein (double strande 55.4 8.2 0.00037 19.2 3.3 45 11-55 17-64 (77)
33 1q1h_A TFE, transcription fact 54.3 9.3 0.00042 18.9 3.4 57 3-59 13-70 (110)
34 1u2w_A CADC repressor, cadmium 53.6 13 0.00059 18.1 5.1 55 12-66 46-100 (122)
35 2qq9_A Diphtheria toxin repres 52.7 14 0.00061 18.1 4.3 48 11-58 13-60 (226)
36 2qlz_A Transcription factor PF 52.4 14 0.00062 18.0 5.4 42 13-54 169-210 (232)
37 2d1h_A ST1889, 109AA long hypo 51.3 14 0.00064 17.9 5.4 52 8-59 21-73 (109)
38 1eh6_A O6-alkylguanine-DNA alk 50.4 12 0.00055 18.3 3.5 41 12-54 98-141 (207)
39 3e6c_C CPRK, cyclic nucleotide 50.4 15 0.00067 17.9 4.7 41 22-64 177-217 (250)
40 3gva_A Alkyltransferase-like p 47.6 12 0.00053 18.4 3.1 43 10-54 7-52 (116)
41 1bcp_D Pertussis toxin; ADP-ri 46.1 3.5 0.00016 21.2 0.2 18 57-74 36-53 (110)
42 2pjp_A Selenocysteine-specific 45.0 16 0.00069 17.8 3.3 52 11-64 6-60 (121)
43 2kif_A O6-methylguanine-DNA me 44.9 18 0.00082 17.4 4.1 42 10-53 5-49 (108)
44 3iwz_A CAP-like, catabolite ac 41.6 21 0.00093 17.1 5.1 41 22-64 187-227 (230)
45 3e97_A Transcriptional regulat 40.8 22 0.00096 17.0 3.7 40 22-63 175-214 (231)
46 1fx7_A Iron-dependent represso 40.8 22 0.00096 17.0 4.3 47 11-57 13-59 (230)
47 2v1n_A KIN17, protein KIN homo 39.5 17 0.00074 17.6 2.8 52 8-65 40-92 (111)
48 3bdd_A Regulatory protein MARR 36.0 26 0.0012 16.6 5.2 49 9-57 32-80 (142)
49 2gqq_A Leucine-responsive regu 35.2 4.1 0.00018 20.8 -0.9 43 11-53 16-58 (163)
50 3hrs_A Metalloregulator SCAR; 34.5 27 0.0012 16.5 4.2 45 12-56 10-54 (214)
51 3dv8_A Transcriptional regulat 33.7 28 0.0013 16.4 3.7 40 22-63 169-208 (220)
52 2zdb_A Transcriptional regulat 33.6 28 0.0013 16.4 3.7 42 22-65 139-180 (195)
53 2pq8_A Probable histone acetyl 32.6 29 0.0013 16.4 3.1 34 11-44 196-230 (278)
54 3ct5_A Morphogenesis protein 1 32.0 30 0.0014 16.2 3.5 41 3-55 11-51 (159)
55 1zyb_A Transcription regulator 31.5 31 0.0014 16.2 4.2 41 22-64 186-226 (232)
56 3jth_A Transcription activator 30.6 32 0.0014 16.1 6.6 47 20-66 34-80 (98)
57 3dkw_A DNR protein; CRP-FNR, H 30.2 30 0.0014 16.2 2.9 40 23-64 179-218 (227)
58 3dp7_A SAM-dependent methyltra 30.0 33 0.0015 16.1 3.8 38 12-49 39-83 (363)
59 3l4g_A Phenylalanyl-tRNA synth 29.8 8.5 0.00038 19.1 0.0 45 7-57 74-118 (508)
60 2pi2_A Replication protein A 3 29.3 8.8 0.00039 19.1 0.0 45 11-55 210-258 (270)
61 3bpv_A Transcriptional regulat 28.7 35 0.0016 15.9 6.1 50 8-57 29-78 (138)
62 3by6_A Predicted transcription 28.6 35 0.0016 15.9 3.5 45 19-64 31-76 (126)
63 2jsc_A Transcriptional regulat 27.9 36 0.0016 15.9 6.1 54 12-66 25-78 (118)
64 2fbi_A Probable transcriptiona 27.4 37 0.0016 15.8 4.9 47 11-57 39-85 (142)
65 1ft9_A Carbon monoxide oxidati 27.3 37 0.0016 15.8 3.6 37 22-58 163-199 (222)
66 3e6m_A MARR family transcripti 26.1 39 0.0017 15.7 3.4 45 13-57 58-102 (161)
67 2v79_A DNA replication protein 25.0 40 0.0018 15.6 2.7 35 23-57 52-86 (135)
68 3cjn_A Transcriptional regulat 24.7 42 0.0019 15.5 4.9 45 12-56 56-100 (162)
69 3cuq_B Vacuolar protein-sortin 24.2 42 0.0019 15.5 6.5 58 9-66 155-212 (218)
70 2hye_C Cullin-4A, CUL-4A; beta 24.1 43 0.0019 15.5 4.4 44 12-55 597-641 (759)
71 2ou2_A Histone acetyltransfera 24.1 43 0.0019 15.5 2.8 26 21-46 211-236 (280)
72 3eyi_A Z-DNA-binding protein 1 23.9 43 0.0019 15.4 3.8 56 9-64 11-67 (72)
73 3f6o_A Probable transcriptiona 23.4 44 0.002 15.4 5.9 54 12-66 22-75 (118)
74 2vn2_A DNAD, chromosome replic 23.0 45 0.002 15.3 2.8 36 23-58 52-87 (128)
75 3f2g_A Alkylmercury lyase; MER 22.4 46 0.0021 15.3 4.2 46 12-61 26-71 (220)
76 1ckt_A High mobility group 1 p 22.4 44 0.002 15.4 2.5 30 3-32 31-60 (71)
77 2o0y_A Transcriptional regulat 22.1 47 0.0021 15.2 3.8 52 8-60 23-75 (260)
78 3e11_A Predicted zincin-like m 21.8 42 0.0019 15.5 2.3 20 25-45 95-114 (114)
79 2oz6_A Virulence factor regula 21.8 48 0.0021 15.2 3.4 41 22-64 164-204 (207)
80 2fmy_A COOA, carbon monoxide o 21.7 48 0.0021 15.2 3.6 41 22-63 167-207 (220)
81 1ufm_A COP9 complex subunit 4; 20.5 51 0.0023 15.1 3.8 50 19-68 27-78 (84)
No 1
>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.90 E-value=0.23 Score=27.41 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=40.3
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8999987078-951778899884899889886521441168134664
Q T0560 11 GKVWHALNEA-DGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (74)
Q Consensus 11 G~VW~~L~e~-~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~ 56 (74)
-+|-++|.+. .+.+..+|+++++++.+|+..++==|.+|+||.-..
T Consensus 13 qkVL~~L~eaG~p~~a~~iA~~~gv~KKeVnk~l~~LKkegki~spk 59 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPS 59 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999768978799999998878899999999998776805898
No 2
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=87.31 E-value=0.63 Score=25.09 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 96134556788999987078951778899884899889886521441168134
Q T0560 1 MDKKIVGANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 1 M~k~~IG~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
|.+-+.-..--+|.++|.+++..|+.+|+++.|+|..-+..-|--|-.+|=|.
T Consensus 3 m~~~~lD~~D~~Il~~L~~d~R~s~~eia~~~gls~~tv~~Ri~~L~~~GiI~ 55 (162)
T 2p5v_A 3 MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp --CCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 89898189999999999983899999999998919999999999998579247
No 3
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=85.50 E-value=1.9 Score=22.59 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE--EECCEEEEEE
Q ss_conf 678899998707895177889988489988988652144116813466--4077378853
Q T0560 8 ANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIE--RKNGLIEIYN 65 (74)
Q Consensus 8 ~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~--~~~g~l~v~~ 65 (74)
.+--.|+.+|.+.++.+.++|++.++++...++.+|-=|.+.|=|.-. ++++..|++.
T Consensus 20 ~~e~~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~Glv~r~~~~~~~~~~~~~ 79 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYS 79 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 999999999980488879999999756701899999999959997987425788655433
No 4
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=83.73 E-value=1.4 Score=23.19 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 961345567889999870789517788998848998898865214411681346640
Q T0560 1 MDKKIVGANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 1 M~k~~IG~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
|.-.++-.---.||.+..+.+..+.++|++..+.+...+..++..|.++|=|..+..
T Consensus 1 m~t~~~EdYL~~I~~l~~~~~~v~~~~iA~~L~vs~~svt~~lk~L~~~GlV~~~~~ 57 (142)
T 1on2_A 1 MTTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 989609999999999996389976999999969887899999999997799650689
No 5
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=83.41 E-value=0.87 Score=24.35 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078951778899884899889886521441168134
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
=+|-..|.+|+..|+.+|++++|+|..-+..-+-.|-.+|-|.
T Consensus 10 ~~IL~~L~~n~R~s~~~iA~~lg~S~~tv~~Ri~~L~~~GiI~ 52 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 9999999974899999999998929899999999997334302
No 6
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=82.54 E-value=1.9 Score=22.59 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 567889999870789517788998848998898865214411681346
Q T0560 7 GANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 7 G~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
-.|...|.++|..+++.|-.+|++.|+||..-+..-+.=|.+++-|.-
T Consensus 15 ~~N~~~il~~i~~~g~~SR~ela~~~gLs~~Tvs~iv~~L~~~glv~e 62 (406)
T 1z6r_A 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 999999999999859918999998879599999999999998898896
No 7
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4}
Probab=82.42 E-value=1.6 Score=22.91 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHCCC-------CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 45567889999870789-------51778899884899889886521441168134664
Q T0560 5 IVGANAGKVWHALNEAD-------GISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (74)
Q Consensus 5 ~IG~nAG~VW~~L~e~~-------~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~ 56 (74)
.+...|.+|-+.|.+++ +.+-.+|++..++|-+-.-.|||=|.|+.||.+++
T Consensus 221 ~~~~~~e~il~~l~~~~G~l~~~dkS~pe~I~~~f~~SK~~fK~aiG~L~k~~~I~~~~ 279 (285)
T 3go5_A 221 MLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQ 279 (285)
T ss_dssp CCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 55558999999999759934279999999999997919999999877876387499919
No 8
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=80.35 E-value=1.6 Score=22.93 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 96134556788999987078951778899884899889886521441168134
Q T0560 1 MDKKIVGANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 1 M~k~~IG~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
|.+..+-..-=+|-++|.+++..|+++|++++|+|..-+..-|-=|-.+|=|.
T Consensus 1 m~~~~lD~~D~~Il~~L~~d~R~s~~eia~~~g~s~~tv~~Ri~rL~~~GiI~ 53 (152)
T 2cg4_A 1 MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp ---CCCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEE
T ss_conf 98554579999999999985899999999998877589999999971125210
No 9
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=80.09 E-value=1.6 Score=22.96 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 88999987078951778899884899889886521441168134
Q T0560 10 AGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 10 AG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
-=+|-++|.+++..|+.+|++++|+|..-+..-|-.|-.+|=|.
T Consensus 29 D~~IL~~L~~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GiI~ 72 (171)
T 2e1c_A 29 DKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99999999983899999999998909999999999998489824
No 10
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=78.91 E-value=2.1 Score=22.32 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 889999870789517788998848998898865214411681346640
Q T0560 10 AGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 10 AG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
--.|..+|.+++++++++|+++.+++..-+..-+--|..+|=|..+..
T Consensus 18 r~~Il~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~GlV~~~~~ 65 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf 999999972678961999999885268744199998642124888876
No 11
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=78.62 E-value=3.8 Score=21.01 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEE-EEE
Q ss_conf 6788999987078-951778899884899889886521441168134664077378-853
Q T0560 8 ANAGKVWHALNEA-DGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIE-IYN 65 (74)
Q Consensus 8 ~nAG~VW~~L~e~-~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~-v~~ 65 (74)
+-.-.|=++|.+. ...+.+++.+.++++.+++-.++-=|.-.++|..-..++..| ++.
T Consensus 2 sp~e~l~~~l~~~~~gl~~~el~~~~~l~~~~~~~~L~~L~~~g~v~~~~~~~~~~~i~~ 61 (135)
T 2v9v_A 2 SPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAIST 61 (135)
T ss_dssp CHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEH
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEECH
T ss_conf 989999999985768979999998949599999999999974897899951796589869
No 12
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=78.05 E-value=2.6 Score=21.89 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=38.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 999987078951778899884899889886521441168134
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
+|=++|..++..|+.+|+++.|+|..-+..-|-.|-.+|-|.
T Consensus 7 ~IL~~L~~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GiI~ 48 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 999999985899999999998919999999999998379746
No 13
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=76.75 E-value=2.9 Score=21.63 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 67889999870789517788998848998898865214411681346
Q T0560 8 ANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 8 ~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
.|...|.++|..+++.|-.||++.|+||..-+..-+.=|..++-|.-
T Consensus 39 ~N~~~Il~~i~~~g~iSR~eLa~~tgLS~~TVs~iv~~L~~~gli~e 85 (429)
T 1z05_A 39 INAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999859918999998879699999999999998896898
No 14
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=76.26 E-value=3.4 Score=21.23 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 45567889999870-789517788998848998898865214411681346640
Q T0560 5 IVGANAGKVWHALN-EADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 5 ~IG~nAG~VW~~L~-e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
-+....+.|+.+|. .++++|+++|++.+++|..-+..++-=|.+.|=|.-...
T Consensus 23 Gl~~~~~~v~~~L~~~~~p~t~~eLa~~l~isks~vs~~l~~L~~~GlV~r~~~ 76 (152)
T 1ku9_A 23 GLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWI 76 (152)
T ss_dssp TCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 979999999999997698969999997848665149999999998899898528
No 15
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=76.15 E-value=3 Score=21.52 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 88999987078951778899884899889886521441168134
Q T0560 10 AGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 10 AG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
-=+|-++|..++..|+.+|+++.|+|..-+..-|--|-.+|-|.
T Consensus 9 D~~Il~~L~~d~R~s~~~ia~~lgls~~tv~~Ri~~L~~~giI~ 52 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHC
T ss_conf 99999999984899999999998909999999999984010102
No 16
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=76.01 E-value=2.5 Score=21.94 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 6788999987078951778899884899889886521441168134
Q T0560 8 ANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 8 ~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
..--+|=++|.+++..|+++|++++|+|...+..-|-.|-.+|=|.
T Consensus 9 ~~D~~IL~~L~~d~R~s~~~iA~~lgls~~tv~~Ri~rL~~~GvI~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCE
T ss_conf 9999999999885999999999998969999999999984055210
No 17
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=75.96 E-value=2.5 Score=21.96 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 8999987078---9517788998848998898865214411681346
Q T0560 11 GKVWHALNEA---DGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 11 G~VW~~L~e~---~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
-+||+.|..- ...||++|++..+-+.. |+|--.+.|.|.+
T Consensus 74 ~~Vw~~L~~IP~G~t~TY~elA~~~~~a~R----AVg~A~~~Npi~i 116 (156)
T 1wrj_A 74 IRVFKEVMRIKWGEVRTYKQVADAVKTSPR----AVGTALSKNNVLL 116 (156)
T ss_dssp HHHHHHHTTSCTTCCEEHHHHHHHTTSCHH----HHHHHHHTCSBTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCHH----HHHHHHHHCCCCC
T ss_conf 999999841982553339999998230389----9999999538988
No 18
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=75.32 E-value=3.4 Score=21.22 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 56788999987078951778899884899889886521441168134
Q T0560 7 GANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 7 G~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
-..--+|-++|.+++..|+.+|++++|+|..-+..-|-=|-.+|=|.
T Consensus 16 D~~D~~IL~~L~~d~R~s~~eIA~~lglS~~tV~~Ri~rLe~~GvI~ 62 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99999999999984899999999998909999999999999689747
No 19
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=73.82 E-value=3.5 Score=21.20 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCH-HHHHHHHHHHHCCCEEEEE
Q ss_conf 5567889999870789517788998848998-8988652144116813466
Q T0560 6 VGANAGKVWHALNEADGISIPELARKVNLSV-ESTALAVGWLARENKVVIE 55 (74)
Q Consensus 6 IG~nAG~VW~~L~e~~~~s~~el~k~t~lsd-~el~lAiGWLarE~KI~~~ 55 (74)
+-.+..+|.++|-+.++.+.-.|+|..|++. +||...+==|.|.+++.=+
T Consensus 9 ~~~~~ekI~~~L~~~g~stAl~lak~lgl~kakeVN~~LY~Lek~g~v~k~ 59 (79)
T 1xmk_A 9 MAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 437899999999965984399999994997267775999999975680017
No 20
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=73.57 E-value=3.9 Score=20.93 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078951778899884899889886521441168134
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
-+|-++|.+|+..|+++|+++.|+|..-+..-+.=|-.+|=|.
T Consensus 6 ~~Il~~L~~d~r~s~~~ia~~~g~s~~tv~~Ri~rL~~~GvI~ 48 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9999999983899999999998919999999999999689823
No 21
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=72.35 E-value=4.3 Score=20.69 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078951778899884899889886521441168134
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
=+|-++|.+|+..|+.+|++++|+|..-+..-|-=|-++|=|.
T Consensus 8 ~~Il~~L~~n~R~s~~eia~~~g~s~~tv~~Ri~rL~~~GiI~ 50 (144)
T 2cfx_A 8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHH
T ss_conf 9999999984899999999998858889999999872012444
No 22
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=71.32 E-value=3.4 Score=21.27 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEE
Q ss_conf 889999870789517788998848998898865214411681346640773788
Q T0560 10 AGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEI 63 (74)
Q Consensus 10 AG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v 63 (74)
--.||++..+++..+..+|++..+.+...+.-+|..|.++|=|..+.. +.+.+
T Consensus 42 Le~Iy~L~~~~~~vr~~dIA~~L~vs~~sV~~~l~~L~~~GlI~~~~~-~~i~L 94 (155)
T 2h09_A 42 VELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW-RGVFL 94 (155)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT-TEEEE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC-CCEEE
T ss_conf 999999996289760999999969887799999999987899776599-89788
No 23
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding protein, DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli B} SCOP: a.4.2.1 c.55.7.1
Probab=68.21 E-value=5 Score=20.38 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=28.7
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHCCC--HHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078---951778899884899--889886521441168134
Q T0560 11 GKVWHALNEA---DGISIPELARKVNLS--VESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~---~~~s~~el~k~t~ls--d~el~lAiGWLarE~KI~ 53 (74)
-+||++|.+- ...||++|++..+.+ ..-|+.|+| .|.|.
T Consensus 99 ~~Vw~aL~~IP~G~t~SY~~lA~~ig~p~a~RAVg~A~~----~Npi~ 142 (180)
T 1sfe_A 99 QQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACA----ANKLA 142 (180)
T ss_dssp HHHHHHHTTSCTTCCEEHHHHHHHTTCTTCHHHHHHHHH----TCCBB
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHH----HCCCC
T ss_conf 999999865216740159999998399972699999998----58998
No 24
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=68.00 E-value=7.1 Score=19.57 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=47.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 9999870789517788998848998898865214411681346640773788536
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
.|-..|.+.+..++.+|.+.++++..-+-.-+.-|-+.|=|..+++-...|.++.
T Consensus 28 ~Il~~L~~~~~~~~~ela~~l~ls~stvS~HL~~L~~aGlV~~~r~G~~~~Y~l~ 82 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIK 82 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEEC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 9999997699941999999989298789999999998895179988899999988
No 25
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=67.92 E-value=5.1 Score=20.34 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=29.1
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078---951778899884899889886521441168134
Q T0560 11 GKVWHALNEA---DGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~---~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
-+||++|.+- ...||.+|++..+-+. .|+|.-.+.|.+.
T Consensus 82 ~~V~~~l~~Ip~G~~~TYg~iA~~~g~~~----RaVg~A~~~Np~~ 123 (167)
T 2g7h_A 82 KKVLDIVKDIEFGKTLTYGDIAKKLNTSP----RAVGMALKRNPLP 123 (167)
T ss_dssp HHHHHHHTTCCTTCCEEHHHHHHHHTSCH----HHHHHHHHTCSCT
T ss_pred HHHHHHHHCCCCCCEECHHHHHHHCCCCH----HHHHHHHHCCCCC
T ss_conf 99999996699977385899997769756----7999997519998
No 26
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=67.07 E-value=7.4 Score=19.46 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=44.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEECC
Q ss_conf 9998707895177889988489988988652144116813466407737885368
Q T0560 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNEG 67 (74)
Q Consensus 13 VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~~ 67 (74)
|-.+|.+ ++.++++|...++++..-+.--+--|.+.|-|..+++....|.++..
T Consensus 30 Il~~L~~-~~~~v~eLa~~l~is~stvS~HL~~L~~aGlV~~~k~Gr~~~Y~l~~ 83 (108)
T 2kko_A 30 ILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAG 83 (108)
T ss_dssp HHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESC
T ss_pred HHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECH
T ss_conf 9999981-99789999999890999999999999988922799888999999890
No 27
>1qnt_A Methylated-DNA--protein-cysteine methyltransferase; DNA repair, alkyltransferase; 1.9A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1yfh_A* 1t39_A* 1t38_A*
Probab=67.05 E-value=4.3 Score=20.70 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=27.3
Q ss_pred HHHHHHHCC---CCCCHHHHHHHHCC--CHHHHHHHHHHHHCCCEEE
Q ss_conf 999987078---95177889988489--9889886521441168134
Q T0560 12 KVWHALNEA---DGISIPELARKVNL--SVESTALAVGWLARENKVV 53 (74)
Q Consensus 12 ~VW~~L~e~---~~~s~~el~k~t~l--sd~el~lAiGWLarE~KI~ 53 (74)
.||++|.+- ...||++|+++.|- ...-|+.|+| .|.|.
T Consensus 98 ~VW~aL~~IP~G~t~SY~~lA~~iG~p~a~RAVg~A~~----~NPi~ 140 (176)
T 1qnt_A 98 VLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMR----GNPVP 140 (176)
T ss_dssp HHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHHT----TCSSB
T ss_pred HHHHHHCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHH----HCCCC
T ss_conf 99997514999447019999998389977999999998----68998
No 28
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=61.82 E-value=9.4 Score=18.92 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=41.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 9999870789517788998848998898865214411681346640773788536
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
+|-..|.+.++.++.+|.+.++++..-+-.-+.-| |.|=|..++.-...|.++.
T Consensus 31 ~Il~~L~~~~~~~v~ela~~l~~s~stvS~HL~~L-~aglV~~~r~G~~~~Y~l~ 84 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKM-RGKVLKRNRQGLEIYYSIN 84 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHH-BTTTBEEEEETTEEEEECC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEEEECCEEEEEEC
T ss_conf 99999964799059999999885876899999999-8297348987588999989
No 29
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=60.55 E-value=7 Score=19.59 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 999987078951778899884899889886521441168134
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
+|-+.|.+++..|+.+|++.+|+|..-+.--|.=|-.+|=|.
T Consensus 8 ~il~~L~~~~r~s~~~ia~~~gls~~~v~~Ri~~L~~~GvI~ 49 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999985898999999998909999999999986069612
No 30
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 2gxb_A 2acj_A
Probab=59.09 E-value=11 Score=18.65 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHHC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8899998707---8951778899884899889886521441168134664
Q T0560 10 AGKVWHALNE---ADGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (74)
Q Consensus 10 AG~VW~~L~e---~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~ 56 (74)
.-+|-++|.+ ....+..+|+|..+++.+++...+==|.|+++|.-+.
T Consensus 12 e~~Il~~L~~lg~g~~~tA~~LAk~lgv~Kk~vN~~LY~L~k~g~v~~~~ 61 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 99999999854899751099999996988889899999999878832058
No 31
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis KOD1} SCOP: a.4.2.1 c.55.7.1
Probab=57.32 E-value=8 Score=19.29 Aligned_cols=41 Identities=32% Similarity=0.350 Sum_probs=30.4
Q ss_pred HHHHHHHHHC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 8899998707----89517788998848998898865214411681346
Q T0560 10 AGKVWHALNE----ADGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 10 AG~VW~~L~e----~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
--+||++|.. ....||.+|++..+-+ ..|+|+-.+-|.+.+
T Consensus 93 q~~V~~~l~~~IP~G~v~TYg~iA~~~g~~----~RaVG~a~~~Np~~~ 137 (174)
T 1mgt_A 93 EKKVYEWLTKNVKRGSVITYGDLAKALNTS----PRAVGGAMKRNPYPI 137 (174)
T ss_dssp HHHHHHHHHHHSCTTCCEEHHHHHHHTTSC----HHHHHHHHHTCSCTT
T ss_pred HHHHHHHHHHHCCCCEEECHHHHHHHCCCC----CHHHHHHHHHCCCCC
T ss_conf 999999998448994477799999883997----289999986089888
No 32
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=55.43 E-value=8.2 Score=19.23 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=37.8
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 8999987078---95177889988489988988652144116813466
Q T0560 11 GKVWHALNEA---DGISIPELARKVNLSVESTALAVGWLARENKVVIE 55 (74)
Q Consensus 11 G~VW~~L~e~---~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~ 55 (74)
-+|-++|.+. ...+..+|+|..+++.+++...+==|.|++++.-+
T Consensus 17 ~kIl~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 999999996589876029999999698888889999999987895306
No 33
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=54.32 E-value=9.3 Score=18.94 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 1345567889999870789-51778899884899889886521441168134664077
Q T0560 3 KKIVGANAGKVWHALNEAD-GISIPELARKVNLSVESTALAVGWLARENKVVIERKNG 59 (74)
Q Consensus 3 k~~IG~nAG~VW~~L~e~~-~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g 59 (74)
++..|..|-.|.++|-+.+ ..+-.+|+..++++..++-..+.=|..++=|...+...
T Consensus 13 ~~~~G~~a~~i~~~L~~~~~~l~ee~la~~~~i~~k~vR~iL~~L~~~~lv~~~r~~d 70 (110)
T 1q1h_A 13 KSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRD 70 (110)
T ss_dssp HTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC-
T ss_pred HHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9980969999999999869887899999895999999999999999869724034014
No 34
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=53.60 E-value=13 Score=18.14 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=45.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 9999870789517788998848998898865214411681346640773788536
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
.|-..|...+..++.+|...++++..-+---+-=|...|=|..++.....|.++.
T Consensus 46 ~Il~~L~~~~~~~v~ela~~l~is~~~vS~HL~~L~~~GlV~~~r~Gr~~~Y~l~ 100 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLG 100 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEES
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEEC
T ss_conf 9999998879906999998884570079999999998892589998889999988
No 35
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=52.69 E-value=14 Score=18.06 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=40.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 899998707895177889988489988988652144116813466407
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKN 58 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~ 58 (74)
-.||.+-.+++..+.++|++..+.+...+..++..|.++|=|..+...
T Consensus 13 ~~Iy~l~~~~~~~~~~~iA~~L~vs~~svt~~l~~L~~~Glv~~~~~~ 60 (226)
T 2qq9_A 13 RTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDR 60 (226)
T ss_dssp HHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 999999864997729999999689907999999999988999985998
No 36
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=52.43 E-value=14 Score=18.04 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 999870789517788998848998898865214411681346
Q T0560 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 13 VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
+++.+-..+.-++.++...++++..++..+++.|++-+.+..
T Consensus 169 ~l~~~l~~~~~t~eela~~l~~~~~~V~~~l~~l~~~g~~~~ 210 (232)
T 2qlz_A 169 ILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKI 210 (232)
T ss_dssp HHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 998724158566899998869498999999999872064047
No 37
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=51.35 E-value=14 Score=17.95 Aligned_cols=52 Identities=21% Similarity=0.150 Sum_probs=41.5
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 6788999987-078951778899884899889886521441168134664077
Q T0560 8 ANAGKVWHAL-NEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNG 59 (74)
Q Consensus 8 ~nAG~VW~~L-~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g 59 (74)
..--.|...| ...+++|.++|++.++++..-+...+..|...|=|.-....+
T Consensus 21 ~~~~~iL~~L~~~~~~lt~~ela~~l~i~~~tv~~~l~~L~~~GlV~r~~~~~ 73 (109)
T 2d1h_A 21 DTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEG 73 (109)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99999999999849698999999997887234999999999879863626877
No 38
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1eh7_A 1eh8_A*
Probab=50.44 E-value=12 Score=18.29 Aligned_cols=41 Identities=34% Similarity=0.351 Sum_probs=28.3
Q ss_pred HHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 999987078---9517788998848998898865214411681346
Q T0560 12 KVWHALNEA---DGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 12 ~VW~~L~e~---~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
.||++|.+- ...||.+|++..|-.. -..|+|=-.+.|.|.+
T Consensus 98 ~VW~~L~~IP~Get~TY~~lA~~iG~p~--aaRAVG~A~g~NPi~i 141 (207)
T 1eh6_A 98 VLWKLLKVVKFGEVISYQQLAALAGNPK--AARAVGGAMRGNPVPI 141 (207)
T ss_dssp HHHHHHHHCCTTCCEEHHHHHHHTTCTT--CHHHHHHHTTSCSSBT
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHCCCC--HHHHHHHHHHHCCCCC
T ss_conf 9999995699975111999999968996--5999999998289865
No 39
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=50.39 E-value=15 Score=17.86 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 5177889988489988988652144116813466407737885
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
+.|.++|+..+|.+...+..++.-|.+||-|.+++ +.+.|.
T Consensus 177 ~lt~~~LA~~lgisr~tvsr~l~~L~~~g~I~~~~--~~i~I~ 217 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK--NKIIVY 217 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS--SEEEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC--CEEEEC
T ss_conf 86899999897999999999999999889899749--999987
No 40
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X*
Probab=47.58 E-value=12 Score=18.39 Aligned_cols=43 Identities=26% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHHHHHCC--C-CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 88999987078--9-517788998848998898865214411681346
Q T0560 10 AGKVWHALNEA--D-GISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 10 AG~VW~~L~e~--~-~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
--+||++|..- | ..||.+|++..|... -..|+|+..+.|.+.+
T Consensus 7 ~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~--~aRaVG~al~~np~~~ 52 (116)
T 3gva_A 7 YTKVYDAVCEIPYGKVSTYGEIARYVGMPS--YARQVGQAMKHLHPET 52 (116)
T ss_dssp HHHHHHHHTTSCTTCBBCHHHHHHHTTCTT--CHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHCCCC--CHHHHHHHHHHCCCCC
T ss_conf 999999980489987498999999819985--3079999998589998
No 41
>1bcp_D Pertussis toxin; ADP-ribosyltransferase, transferase, whooping cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP: b.40.2.1 PDB: 1prt_D 1pto_D*
Probab=46.14 E-value=3.5 Score=21.17 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=12.4
Q ss_pred ECCEEEEEECCEEEEECC
Q ss_conf 077378853682655419
Q T0560 57 KNGLIEIYNEGHFDFSFG 74 (74)
Q Consensus 57 ~~g~l~v~~~~n~~F~fg 74 (74)
+-|-.--|.+.+|+||||
T Consensus 36 klgaaasspdahvpfcfg 53 (110)
T 1bcp_D 36 KLGAAASSPDAHVPFCFG 53 (110)
T ss_dssp ETTCCSSSGGGCEEEEEE
T ss_pred HHCCCCCCCCCCCCCEEC
T ss_conf 643244798874651106
No 42
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=44.97 E-value=16 Score=17.78 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=37.3
Q ss_pred HHHHHHHH---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 89999870---7895177889988489988988652144116813466407737885
Q T0560 11 GKVWHALN---EADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 11 G~VW~~L~---e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
-++|+.+. ...+.++++|.+.++++..++-..+..|+++|+|.--. +.+|+.
T Consensus 6 q~~~~~i~~~~~~~Pp~v~dla~~l~~~~~~~~~~L~~l~~~G~lv~i~--~~~y~~ 60 (121)
T 2pjp_A 6 QAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV--KDRYYR 60 (121)
T ss_dssp HHHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE--TTEEEE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEC--CCEEEE
T ss_conf 9999999998757999799999997929999999999999799489953--998873
No 43
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=44.88 E-value=18 Score=17.39 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=31.2
Q ss_pred HHHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 88999987078---951778899884899889886521441168134
Q T0560 10 AGKVWHALNEA---DGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 10 AG~VW~~L~e~---~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
.-+||+++..- +-.||.+|++..|... -+.|+||-++.|...
T Consensus 5 ~~~V~~~v~~IP~G~v~TYg~iA~~~G~p~--~aRaVG~al~~np~~ 49 (108)
T 2kif_A 5 LVQIFAVIHQIPKGKVSTYGEIAKMAGYPG--YARHVGKALGNLPEG 49 (108)
T ss_dssp HHHHHHHHTTCCTTCBEEHHHHHHHHTCTT--CHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHCCCCC--CHHHHHHHHHHCCCC
T ss_conf 999999995689997597999999809982--168999999838988
No 44
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=41.60 E-value=21 Score=17.10 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 5177889988489988988652144116813466407737885
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
+++.++|+..+|.+..-+...+.-|-+||.|..+ .+.+.|.
T Consensus 187 ~lt~~~iA~~lg~sr~tv~R~l~~l~~~g~I~~~--~~~i~I~ 227 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHAR--GKTVVLY 227 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCEEEEE
T ss_conf 7799999989798899999999999978989964--9999998
No 45
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=40.82 E-value=22 Score=17.03 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEE
Q ss_conf 517788998848998898865214411681346640773788
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEI 63 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v 63 (74)
+.+..+|+...|.+..-+..++.-|.++|-|... .+.+.|
T Consensus 175 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~--~~~i~I 214 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS--PRSVTL 214 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--SSCEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCEEEE
T ss_conf 6689999989699899999999999978989972--999999
No 46
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=40.82 E-value=22 Score=17.03 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 89999870789517788998848998898865214411681346640
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
-.||++-.+++..+.++|++..+.+...+..++.-|.++|=|..+..
T Consensus 13 ~~Iy~l~~~~~~v~~~~lA~~L~vs~~svt~~l~kL~~~Glv~~~~y 59 (230)
T 1fx7_A 13 RTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCC
T ss_conf 99999984499751999999978991689999999987998897399
No 47
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=39.50 E-value=17 Score=17.63 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=31.2
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 6788999987-078951778899884899889886521441168134664077378853
Q T0560 8 ANAGKVWHAL-NEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYN 65 (74)
Q Consensus 8 ~nAG~VW~~L-~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~ 65 (74)
.+|-+||+-. ++..+.-+- +|.-+ .|--=+-||.||||+.+++.+.-+||+-
T Consensus 40 V~aN~vY~EyI~dk~HiHMN----aT~W~--sLT~FvkyLgr~G~c~VdetekG~fI~y 92 (111)
T 2v1n_A 40 VHNNIVYNEYISHREHIHMN----ATQWE--TLTDFTKWLGREGLCKVDETPKGWYIQY 92 (111)
T ss_dssp EEHHHHHHHHTTSSCCCCGG----GSSCS--SHHHHHHHHTTTTSEEEEEETTEEEEEE
T ss_pred EECHHHHHHHHCCCCCCEEC----CCCCC--CHHHHHHHHHHCCCEEEECCCCCEEEEE
T ss_conf 50138899986466751215----65052--4999999963168178851798168986
No 48
>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89}
Probab=36.01 E-value=26 Score=16.61 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 7889999870789517788998848998898865214411681346640
Q T0560 9 NAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 9 nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
..-.|-..|.+.++.+.++|++..+++..-+...+..|.+.|=|.-...
T Consensus 32 ~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~v~~L~~~G~i~r~~~ 80 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 9999999998879989999999989798799999999997899787118
No 49
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=35.23 E-value=4.1 Score=20.79 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078951778899884899889886521441168134
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
=+|=++|.+++..|+.+|++++|+|..-+..-+--|-.+|=|.
T Consensus 16 ~~Il~~L~~d~R~s~~eia~~lglS~~tv~~Ri~rL~~~GiI~ 58 (163)
T 2gqq_A 16 RNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp HHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 9999999974898999999998949999999999998479346
No 50
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=34.47 E-value=27 Score=16.48 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=39.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999987078951778899884899889886521441168134664
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~ 56 (74)
.||.+..+.+..+.++|++..+.+...+..++.=|.+++=|..+.
T Consensus 10 ~i~~l~~~~~~v~~~~iA~~L~v~~~sv~~~l~~L~~~glv~~~~ 54 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK 54 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 999998349987599999997899289999999999889978638
No 51
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=33.70 E-value=28 Score=16.41 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEE
Q ss_conf 517788998848998898865214411681346640773788
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEI 63 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v 63 (74)
+.+.++|+...|.+..-+..++..|.+||-|..+. +.+.|
T Consensus 169 ~~t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~~--~~i~i 208 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLSR--GKITI 208 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--TEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC--CEEEE
T ss_conf 88899999997999999999999999889899729--99998
No 52
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=33.62 E-value=28 Score=16.40 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEE
Q ss_conf 51778899884899889886521441168134664077378853
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYN 65 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~ 65 (74)
++|.++|+..+|.+.+-+...+.-|.++|-|.++ .+.+.|.+
T Consensus 139 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~glI~~~--~~~i~I~d 180 (195)
T 2zdb_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATA--YRRVYLLD 180 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE--TTEEEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE--CCEEEECC
T ss_conf 8889999988799799999999999988989970--99999878
No 53
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A*
Probab=32.63 E-value=29 Score=16.39 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=25.9
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8999987078-951778899884899889886521
Q T0560 11 GKVWHALNEA-DGISIPELARKVNLSVESTALAVG 44 (74)
Q Consensus 11 G~VW~~L~e~-~~~s~~el~k~t~lsd~el~lAiG 44 (74)
..|-+.|.+. +..|+.+|.++|++..+|+..++-
T Consensus 196 ~~i~~~l~~~~~~isi~~is~~T~i~~~Dii~tL~ 230 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQ 230 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999998569984099999861987764999998
No 54
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, structure, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=31.96 E-value=30 Score=16.25 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 13455678899998707895177889988489988988652144116813466
Q T0560 3 KKIVGANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIE 55 (74)
Q Consensus 3 k~~IG~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~ 55 (74)
-..+..||.+||+.|... |+++.-.+.-+|.+.+|.-+.-.
T Consensus 11 ~~e~~~na~~i~~~l~~~------------G~t~~~aAgIlGN~~~ESg~nP~ 51 (159)
T 3ct5_A 11 MSEMKVNAQYILNYLSSN------------GWTKQAICGMLGNMQSESTINPG 51 (159)
T ss_dssp HHHHHHHHHHHHHHHHTT------------TCCHHHHHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 743667799999999986------------99999999999988745079912
No 55
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=31.54 E-value=31 Score=16.21 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 5177889988489988988652144116813466407737885
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
+.+.++|+..+|.+.+-+..++.=|.+||-|..++ +.+.|.
T Consensus 186 ~~t~~~iA~~lg~sr~tv~r~l~~L~~~giI~~~~--~~i~I~ 226 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELHR--KEILIP 226 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET--TEEEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC--CEEEEC
T ss_conf 76999999897989999999999999889899729--999986
No 56
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=30.59 E-value=32 Score=16.12 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 89517788998848998898865214411681346640773788536
Q T0560 20 ADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 20 ~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
+++.++.+|.+.++++..-+---+--|-+.|=|..++.....|.++.
T Consensus 34 ~~~~~v~ela~~l~is~~tvS~HL~~L~~aglV~~~r~G~~~~Y~l~ 80 (98)
T 3jth_A 34 NQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLK 80 (98)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 19967999999989298899999999998895369988789999988
No 57
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=30.19 E-value=30 Score=16.25 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 177889988489988988652144116813466407737885
Q T0560 23 ISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 23 ~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
.|.++|+...|.|..-+...+-.|-++|.|..+ .+.+.|-
T Consensus 179 ~t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~--~~~i~i~ 218 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD--GREISIL 218 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES--SSCEEES
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCEEEEC
T ss_conf 889999888699899999999999978979971--9999983
No 58
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=29.99 E-value=33 Score=16.06 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=28.4
Q ss_pred HHHHHHHCCC-CCCHHHHHHHHCCCHHHH------HHHHHHHHCC
Q ss_conf 9999870789-517788998848998898------8652144116
Q T0560 12 KVWHALNEAD-GISIPELARKVNLSVEST------ALAVGWLARE 49 (74)
Q Consensus 12 ~VW~~L~e~~-~~s~~el~k~t~lsd~el------~lAiGWLarE 49 (74)
.|+.+|++.+ +.|..||+.+++++..-+ ..++|.+.++
T Consensus 39 glfd~L~~~~~p~T~~eLA~~~g~~~~~l~rlL~~L~~~g~l~~~ 83 (363)
T 3dp7_A 39 GIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp THHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 969897339999999999987593999999999999838909985
No 59
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix bundle, acetylation; HET: PHE; 3.30A {Homo sapiens}
Probab=29.79 E-value=8.5 Score=19.15 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 567889999870789517788998848998898865214411681346640
Q T0560 7 GANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 7 G~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
|.---+++++|.+.+ .+..+|.+. .+...|+||++|.+-|.++..
T Consensus 74 G~PE~~l~~~l~~~g-~~~~el~~~-----~~~~i~~~~~~k~~~i~i~k~ 118 (508)
T 3l4g_A 74 GSHEARVFRSIPPEG-LAQSELMRL-----PSGKVGFSKAMSNKWIRVDKS 118 (508)
T ss_dssp ---------------------------------------------------
T ss_pred CCHHHHHHHHHHHCC-CCHHHHHCC-----CCCHHHHHHHHHCCCEEECCC
T ss_conf 999999999876649-887998617-----423478999997698873576
No 60
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=29.34 E-value=8.8 Score=19.08 Aligned_cols=45 Identities=22% Similarity=0.456 Sum_probs=36.9
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHH-CCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 8999987078---951778899884-89988988652144116813466
Q T0560 11 GKVWHALNEA---DGISIPELARKV-NLSVESTALAVGWLARENKVVIE 55 (74)
Q Consensus 11 G~VW~~L~e~---~~~s~~el~k~t-~lsd~el~lAiGWLarE~KI~~~ 55 (74)
-.|.+++.+. ...++.+|.+.. +++..++-.||-.|..|+.|+-.
T Consensus 210 ~~Vl~~i~~~~~~~Gv~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsT 258 (270)
T 2pi2_A 210 NQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYST 258 (270)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECC
T ss_conf 9999987436876883899999984299999999999999759889712
No 61
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=28.65 E-value=35 Score=15.93 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 67889999870789517788998848998898865214411681346640
Q T0560 8 ANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 8 ~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
...-.|=..|.++++.+.++|++..+++..-+.-.|.-|.+.|=|.....
T Consensus 29 ~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~tvs~~i~~L~~~gli~r~~~ 78 (138)
T 3bpv_A 29 DAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQD 78 (138)
T ss_dssp HHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999999998589989999999989698899999999996898686115
No 62
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=28.58 E-value=35 Score=15.93 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=38.5
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 78951-77889988489988988652144116813466407737885
Q T0560 19 EADGI-SIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 19 e~~~~-s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
.+.++ |..+|++..+.|..-+--|+--|..+|=|......|- ||+
T Consensus 31 ~G~~LPs~~~La~~~~VSr~tVr~Al~~L~~~Glv~~~~g~G~-~V~ 76 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGT-FIT 76 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE-EEC
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE-EEC
T ss_conf 9399955999999979898999999999998893799748158-981
No 63
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=27.88 E-value=36 Score=15.86 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 9999870789517788998848998898865214411681346640773788536
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
.|-.+|.+ ++.++.+|...++++..-+---+.=|-+.|=|..+++....|.++.
T Consensus 25 ~Il~~L~~-~~~~v~ela~~l~is~stvS~HL~~L~~aGlV~~~r~G~~~~Y~l~ 78 (118)
T 2jsc_A 25 RILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALA 78 (118)
T ss_dssp HHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEES
T ss_pred HHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 99999982-9938999999989199999999999998896279998898999978
No 64
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=27.43 E-value=37 Score=15.81 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 89999870789517788998848998898865214411681346640
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
-.|-..|.++++.+.++|++..+++..-+...|.-|.+.|=|.....
T Consensus 39 ~~vL~~l~~~~~~~~~ela~~l~~~~~~vs~~i~~L~~~Glv~r~~~ 85 (142)
T 2fbi_A 39 WRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999879989999999979898899999999997899798315
No 65
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=27.29 E-value=37 Score=15.80 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 5177889988489988988652144116813466407
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKN 58 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~ 58 (74)
+.|.++|+...|.+.+.+..++.-|.+++-|..+.+.
T Consensus 163 ~lt~~eLA~~lG~sretv~r~L~~L~~~g~I~~~~r~ 199 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 2889999998499899999999999988989987998
No 66
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=26.15 E-value=39 Score=15.68 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=37.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999870789517788998848998898865214411681346640
Q T0560 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 13 VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
|=..|.+.+..+.++|++..+++..-+...|..|.+.|=|.....
T Consensus 58 vL~~l~~~~~~s~~~La~~l~~~~~~vs~~i~~L~~~glv~r~~~ 102 (161)
T 3e6m_A 58 LLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999779989999999989788799999999983897797336
No 67
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=24.95 E-value=40 Score=15.62 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=32.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 17788998848998898865214411681346640
Q T0560 23 ISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 23 ~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
.|..+|++.++.|...+...|--|...|=|.+++.
T Consensus 52 PS~~~La~~~g~s~~tv~~~l~~L~~kG~i~i~~~ 86 (135)
T 2v79_A 52 PTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEEC 86 (135)
T ss_dssp CCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 89999998969599999999999998899799865
No 68
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=24.69 E-value=42 Score=15.53 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999987078951778899884899889886521441168134664
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~ 56 (74)
.|=..|...++.+.++|++..+++..-+-..|..|.+.|=|....
T Consensus 56 ~iL~~L~~~~~~t~~eLa~~~~v~~~~vs~~l~~L~~~glv~r~~ 100 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999847998999999998969889999999999489879840
No 69
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=24.22 E-value=42 Score=15.48 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 7889999870789517788998848998898865214411681346640773788536
Q T0560 9 NAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 9 nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
..-.|-+++.+.+..|..++++..+.+..-..-.+-.+-++|.+..++.-.-++.+.+
T Consensus 155 ~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~rD~~~eG~~yy~N 212 (218)
T 3cuq_B 155 MVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYPN 212 (218)
T ss_dssp GHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESSSCEEEEEC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEC
T ss_conf 9999999971389968999999969889999999999997797899788762477604
No 70
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1
Probab=24.10 E-value=43 Score=15.47 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=34.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CEEEEE
Q ss_conf 99998707895177889988489988988652144116-813466
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARE-NKVVIE 55 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE-~KI~~~ 55 (74)
.|--+.|+...+|+++|+..|++++.++...+.=|+.. -+|...
T Consensus 597 ~ILllfn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~k 641 (759)
T 2hye_C 597 LVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIK 641 (759)
T ss_dssp HHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999851667882799999987909999999999987112343531
No 71
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=24.10 E-value=43 Score=15.47 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 95177889988489988988652144
Q T0560 21 DGISIPELARKVNLSVESTALAVGWL 46 (74)
Q Consensus 21 ~~~s~~el~k~t~lsd~el~lAiGWL 46 (74)
...|+.+|.++|++..+|+..++-.|
T Consensus 211 ~~isi~dis~~T~i~~~Dii~tL~~l 236 (280)
T 2ou2_A 211 PQITINEISEITSIKKEDVISTLQYL 236 (280)
T ss_dssp -CCBHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCEEHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 74809999887299899999999977
No 72
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens}
Probab=23.90 E-value=43 Score=15.45 Aligned_cols=56 Identities=7% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 788999987078951778899884899-88988652144116813466407737885
Q T0560 9 NAGKVWHALNEADGISIPELARKVNLS-VESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 9 nAG~VW~~L~e~~~~s~~el~k~t~ls-d~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
+-.+|++.|-..++-+.--|+|..|++ .+||..-+==|-|...+.++++...--||
T Consensus 11 ~kEkI~~fL~~~gp~~AL~IAKnlGl~tAkdVN~~Ly~lekqhll~~d~k~~~W~iy 67 (72)
T 3eyi_A 11 REEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIY 67 (72)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECTTTCEEEEC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 699999999966992588999985811177756899999974277766886723778
No 73
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=23.36 E-value=44 Score=15.39 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=43.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 9999870789517788998848998898865214411681346640773788536
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
.|-..|.+ ++.++.+|++.++++..-+.--+.=|-+.|=|..++.-...|.++.
T Consensus 22 ~Il~~L~~-~~~~v~ela~~l~~s~~~vs~HL~~L~~aGlV~~~r~Gr~~~Y~l~ 75 (118)
T 3f6o_A 22 AVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIE 75 (118)
T ss_dssp HHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEEC
T ss_conf 99999980-9977777798869699999999988998898626777888999988
No 74
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=22.98 E-value=45 Score=15.35 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=32.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 177889988489988988652144116813466407
Q T0560 23 ISIPELARKVNLSVESTALAVGWLARENKVVIERKN 58 (74)
Q Consensus 23 ~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~ 58 (74)
.|..+|++.+|+|...+...+-.|...|=|.++...
T Consensus 52 PS~~~LA~~~g~s~~~v~~~l~~L~~kG~i~i~~~~ 87 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999999989792999999999999988997998554
No 75
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=22.44 E-value=46 Score=15.29 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=34.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEE
Q ss_conf 99998707895177889988489988988652144116813466407737
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLI 61 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l 61 (74)
.+.+.|...+..|..+|+++++.+.+++-.++-=+. -|..+ .+|.+
T Consensus 26 ~llr~la~G~Pvt~~~lA~~~~~~~~~v~~~L~~~~---~i~~D-~~G~I 71 (220)
T 3f2g_A 26 PLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT---STEYD-KDGNI 71 (220)
T ss_dssp HHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT---TCEEC-TTSCE
T ss_pred HHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCC---CCEEC-CCCCE
T ss_conf 999999669999989998760999999999998578---85177-99858
No 76
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA complex, gene regulation/DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=22.42 E-value=44 Score=15.39 Aligned_cols=30 Identities=7% Similarity=0.211 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 134556788999987078951778899884
Q T0560 3 KKIVGANAGKVWHALNEADGISIPELARKV 32 (74)
Q Consensus 3 k~~IG~nAG~VW~~L~e~~~~s~~el~k~t 32 (74)
...|....|..|+.|++..+-.+.+.++..
T Consensus 31 ~~ev~k~l~~~Wk~ls~~eK~~y~~~a~~~ 60 (71)
T 1ckt_A 31 FSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60 (71)
T ss_dssp HHHHHHHHHHHHHTCCTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999988429999999999999999
No 77
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=22.07 E-value=47 Score=15.25 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCE
Q ss_conf 6788999987078-9517788998848998898865214411681346640773
Q T0560 8 ANAGKVWHALNEA-DGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGL 60 (74)
Q Consensus 8 ~nAG~VW~~L~e~-~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~ 60 (74)
.+|-.|-++|++. +.++++||.+.++++..-++.-+.=|..+|=+.- ..++.
T Consensus 23 ~r~l~ILe~l~~~~~~lsl~eia~~lgl~kst~~RlL~tL~~~G~l~~-~~~g~ 75 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS-RADGS 75 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE-CTTSC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-CCCCC
T ss_conf 999999999984799989999999979198999999999997997898-16885
No 78
>3e11_A Predicted zincin-like metalloprotease; YP_873820.1, structural genomics, joint center for structural genomics, JCSG; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=21.82 E-value=42 Score=15.53 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=17.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 788998848998898865214
Q T0560 25 IPELARKVNLSVESTALAVGW 45 (74)
Q Consensus 25 ~~el~k~t~lsd~el~lAiGW 45 (74)
+.|++.-.|++++++. ++||
T Consensus 95 vhEiah~~G~~dedl~-~lG~ 114 (114)
T 3e11_A 95 VHEIAHHFGIDDERLH-ELGY 114 (114)
T ss_dssp HHHHHHHTTCCHHHHH-TTTC
T ss_pred HHHHHHHCCCCHHHHH-HCCC
T ss_conf 9999988098887897-7369
No 79
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=21.79 E-value=48 Score=15.22 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 5177889988489988988652144116813466407737885
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
+++.++|+..+|.+.+-+...+.-|-+++.|..+ .+.+.|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsr~l~~L~~~glI~~~--~~~i~I~ 204 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK--GKTMVVF 204 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE--TTEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCEEEEE
T ss_conf 7799999989799999999999999988989977--9999995
No 80
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.72 E-value=48 Score=15.21 Aligned_cols=41 Identities=7% Similarity=0.123 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEE
Q ss_conf 517788998848998898865214411681346640773788
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEI 63 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v 63 (74)
+.|..+|+...|.+..-+..++..|-++|.|... ..+.+.+
T Consensus 167 ~lt~~~iA~~lg~sr~tvsr~l~~l~~~g~I~~~-~~~~i~i 207 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERV-NQRTLLL 207 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEES-SSSEEEE
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-CCCEEEE
T ss_conf 7249999999799899999999999988999976-9998998
No 81
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.51 E-value=51 Score=15.07 Aligned_cols=50 Identities=12% Similarity=0.250 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE--EEEECCEEEEEECCE
Q ss_conf 78951778899884899889886521441168134--664077378853682
Q T0560 19 EADGISIPELARKVNLSVESTALAVGWLARENKVV--IERKNGLIEIYNEGH 68 (74)
Q Consensus 19 e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~--~~~~~g~l~v~~~~n 68 (74)
-....++..|++..+++.+++-.-|-=+..+++|. +++.+|.+++...-.
T Consensus 27 ~Y~~Isl~~la~~l~l~~~~vE~~l~~mI~~~~l~akIDq~~g~V~F~~~e~ 78 (84)
T 1ufm_A 27 LYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HCCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCC
T ss_conf 5044559999999597999999999999867938999918999899778676
Done!