Query T0560 BtR375, , 74 residues
Match_columns 74
No_of_seqs 57 out of 59
Neff 3.8
Searched_HMMs 15564
Date Tue May 25 15:38:03 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0560.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0560.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dpua_ a.4.5.16 (A:) C-termin 91.6 0.18 1.1E-05 27.1 5.1 57 9-66 7-67 (69)
2 d1z05a1 a.4.5.63 (A:10-80) Tra 88.0 0.38 2.4E-05 25.4 4.5 48 7-54 5-52 (71)
3 d1biaa1 a.4.5.1 (A:1-63) Bioti 86.8 0.8 5.1E-05 23.7 5.5 52 9-61 6-57 (63)
4 d1z6ra1 a.4.5.63 (A:12-81) Mlc 85.7 0.8 5.1E-05 23.7 5.0 48 7-54 4-51 (70)
5 d1sfxa_ a.4.5.50 (A:) Hypothet 80.1 2.3 0.00015 21.3 6.7 58 8-65 20-79 (109)
6 d2cfxa1 a.4.5.32 (A:1-63) Tran 79.0 1.6 0.0001 22.2 4.5 43 11-53 8-50 (63)
7 d1i1ga1 a.4.5.32 (A:2-61) LprA 75.0 1.6 0.0001 22.1 3.6 42 12-53 7-48 (60)
8 d2cyya1 a.4.5.32 (A:5-64) Puta 70.7 2.4 0.00015 21.2 3.6 42 12-53 7-48 (60)
9 d1mgta1 a.4.2.1 (A:89-169) O6- 70.5 2.2 0.00014 21.4 3.5 41 11-55 6-50 (81)
10 d2cg4a1 a.4.5.32 (A:4-66) Regu 69.5 3.2 0.0002 20.6 4.1 43 11-53 8-50 (63)
11 d1ldja3 e.40.1.1 (A:411-686) C 68.6 3.1 0.0002 20.7 3.8 44 12-56 199-242 (276)
12 d1xmka1 a.4.5.19 (A:294-366) Z 67.9 2.6 0.00017 21.0 3.4 48 9-56 6-54 (73)
13 d1sfea1 a.4.2.1 (A:93-176) Ada 66.5 2.4 0.00016 21.2 3.0 43 11-55 6-51 (84)
14 d1sfua_ a.4.5.19 (A:) 34L {Yab 65.9 4 0.00026 20.0 4.0 47 12-58 14-60 (70)
15 d1u2wa1 a.4.5.5 (A:12-119) Cad 65.5 5.6 0.00036 19.3 5.1 56 12-67 35-90 (108)
16 d1lvaa3 a.4.5.35 (A:511-574) C 61.9 4.8 0.00031 19.6 3.8 43 11-53 10-54 (64)
17 d1ku9a_ a.4.5.36 (A:) DNA-bind 59.9 7.1 0.00046 18.7 5.5 51 6-56 24-75 (151)
18 d1ub9a_ a.4.5.28 (A:) Hypothet 59.4 7.2 0.00047 18.7 5.4 56 10-65 18-76 (100)
19 d1ldja3 e.40.1.1 (A:411-686) C 58.0 5 0.00032 19.5 3.3 42 13-55 200-241 (276)
20 d1mgta1 a.4.2.1 (A:89-169) O6- 57.9 5.4 0.00034 19.4 3.5 40 11-54 6-49 (81)
21 d2ev0a1 a.4.5.24 (A:2-62) Mang 57.1 6.4 0.00041 19.0 3.7 48 11-58 10-57 (61)
22 d1ft9a1 a.4.5.4 (A:134-213) CO 57.0 5.3 0.00034 19.4 3.3 37 22-58 30-66 (80)
23 d3e5ua1 a.4.5.4 (A:148-227) Ch 56.8 5.9 0.00038 19.1 3.5 41 22-64 30-70 (80)
24 d1prtd_ b.40.2.1 (D:) Pertussi 46.1 2.4 0.00016 21.2 0.2 18 57-74 36-53 (110)
25 d1s6la1 a.4.5.79 (A:21-80) Alk 45.9 12 0.00079 17.5 3.9 34 14-47 8-41 (60)
26 d1qnta1 a.4.2.1 (A:92-176) O6- 45.7 11 0.00073 17.7 3.5 42 11-54 6-50 (85)
27 d2isya1 a.4.5.24 (A:2-64) Iron 45.6 12 0.0008 17.4 4.9 46 11-56 12-57 (63)
28 d2d1ha1 a.4.5.50 (A:1-109) Hyp 45.2 13 0.00081 17.4 5.3 49 9-57 22-71 (109)
29 d1biaa1 a.4.5.1 (A:1-63) Bioti 41.6 14 0.00093 17.1 5.8 48 11-59 8-55 (63)
30 d1ulya_ a.4.5.58 (A:) Hypothet 40.4 15 0.00097 17.0 5.7 47 10-57 21-67 (190)
31 d1i5za1 a.4.5.4 (A:138-206) Ca 38.2 16 0.001 16.9 3.3 40 22-63 29-68 (69)
32 d2giva1 d.108.1.1 (A:4-274) Pr 36.8 17 0.0011 16.7 3.8 36 11-46 191-227 (271)
33 d2gaua1 a.4.5.4 (A:152-232) Tr 36.8 17 0.0011 16.7 3.6 41 22-64 29-69 (81)
34 d1zyba1 a.4.5.4 (A:148-220) Pr 35.5 18 0.0012 16.6 3.3 40 23-64 28-67 (73)
35 d1ufma_ a.4.5.47 (A:) COP9 sig 30.6 22 0.0014 16.1 3.8 49 20-68 28-78 (84)
36 d1hw1a1 a.4.5.6 (A:5-78) Fatty 30.0 23 0.0015 16.1 3.4 41 20-60 24-65 (74)
37 d1fy7a_ d.108.1.1 (A:) Histone 29.3 24 0.0015 16.0 3.5 32 13-44 196-228 (273)
38 d2bgca1 a.4.5.4 (A:138-237) Li 24.7 29 0.0018 15.5 4.9 58 5-64 2-72 (100)
39 d2hyec3 e.40.1.1 (C:403-675) C 24.5 29 0.0019 15.5 4.4 44 13-56 196-240 (273)
40 d1ckta_ a.21.1.1 (A:) High mob 23.6 28 0.0018 15.6 2.5 30 3-32 31-60 (71)
41 d1r1ta_ a.4.5.5 (A:) SmtB repr 23.0 31 0.002 15.4 7.3 54 12-66 27-80 (98)
42 d2a61a1 a.4.5.28 (A:5-143) Tra 22.8 31 0.002 15.3 5.7 51 7-57 27-79 (139)
43 d2ozua1 d.108.1.1 (A:507-776) 22.6 32 0.002 15.3 4.0 37 11-47 191-229 (270)
44 d2hoea1 a.4.5.63 (A:10-71) N-a 22.6 29 0.0019 15.5 2.5 42 13-55 4-45 (62)
45 d1ctta1 c.97.1.1 (A:1-150) Two 21.6 33 0.0021 15.2 3.5 59 12-72 19-93 (150)
46 d2obpa1 a.4.5.71 (A:12-92) Put 21.0 34 0.0022 15.1 3.6 43 11-53 11-55 (81)
47 d1mkma1 a.4.5.33 (A:1-75) Tran 20.8 35 0.0022 15.1 5.8 51 9-60 6-57 (75)
48 d2htja1 a.4.5.73 (A:1-73) P fi 20.6 35 0.0023 15.1 4.1 44 12-55 4-47 (73)
No 1
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.62 E-value=0.18 Score=27.13 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=45.0
Q ss_pred HHHHHHHHHHCC---CCCCHHHHHHHH-CCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 788999987078---951778899884-8998898865214411681346640773788536
Q T0560 9 NAGKVWHALNEA---DGISIPELARKV-NLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 9 nAG~VW~~L~e~---~~~s~~el~k~t-~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
.+-+|++++... .++++.+|++.. +++..++..|+-+|.-||.|+ ...+..-|-|-+
T Consensus 7 ~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IY-sTiDddHfkstd 67 (69)
T d1dpua_ 7 AQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY-STVDDDHFKSTD 67 (69)
T ss_dssp HHHHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEE-ECSSTTEEEESS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEE-CCCCCCHHCCCC
T ss_conf 9999999998388856838999998816999999999999998378555-103654110457
No 2
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=88.05 E-value=0.38 Score=25.41 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 567889999870789517788998848998898865214411681346
Q T0560 7 GANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 7 G~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
-.|+..|.++|..++..|..+|++.+++|..-+..-+.=|..++-|.-
T Consensus 5 ~~N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e 52 (71)
T d1z05a1 5 QINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 52 (71)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 999999999999859948999999988788789999999998898797
No 3
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1biba1 d2ewna1 d1hxda1
Probab=86.82 E-value=0.8 Score=23.71 Aligned_cols=52 Identities=15% Similarity=-0.020 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEE
Q ss_conf 78899998707895177889988489988988652144116813466407737
Q T0560 9 NAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLI 61 (74)
Q Consensus 9 nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l 61 (74)
..=+|..+|.+++.+|.++|+++.++|..-+.-.|-.|-.+| +.++...|.=
T Consensus 6 ~~~~IL~~L~~~~~~s~~eLa~~l~vS~~Tv~r~i~~L~~~G-~~i~s~~g~G 57 (63)
T d1biaa1 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWG-VDVFTVPGKG 57 (63)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTT-CCCEEETTTE
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCC-CEEEEECCCC
T ss_conf 889999999828983778999870999835789999998769-8167326972
No 4
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=85.67 E-value=0.8 Score=23.72 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 567889999870789517788998848998898865214411681346
Q T0560 7 GANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 7 G~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
..|...|.++|..+++.|-.+|++.+++|..-+...+-=|..++-|.-
T Consensus 4 ~~N~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~e 51 (70)
T d1z6ra1 4 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 51 (70)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 789999999999949928999999989499999999999998899786
No 5
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=80.14 E-value=2.3 Score=21.27 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE--EEECCEEEEEE
Q ss_conf 67889999870789517788998848998898865214411681346--64077378853
Q T0560 8 ANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVI--ERKNGLIEIYN 65 (74)
Q Consensus 8 ~nAG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~--~~~~g~l~v~~ 65 (74)
.+-.+|+.+|.+.+..|.++|++.++++...++..+-=|.+.|=|.- .+.++..+++.
T Consensus 20 ~~e~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~~~~ 79 (109)
T d1sfxa_ 20 PSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYS 79 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 999999999882389989999998579835599999999959987988505788502225
No 6
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=79.02 E-value=1.6 Score=22.17 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078951778899884899889886521441168134
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
-+|=++|.+++..|+.+|++.+|+|...+..-|=.|-.++=|.
T Consensus 8 ~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~ 50 (63)
T d2cfxa1 8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (63)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 9999999983999999999998968789999999999889856
No 7
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=74.97 E-value=1.6 Score=22.10 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 999987078951778899884899889886521441168134
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
+|=++|.++...|+.+|+++.|+|...+..-|-=|-+++=|.
T Consensus 7 kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~ 48 (60)
T d1i1ga1 7 IILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 48 (60)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 999999884999999999998929999999999999889757
No 8
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=70.66 E-value=2.4 Score=21.25 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 999987078951778899884899889886521441168134
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
+|=+.|.++...|+.+|++.+++|...+..-|--|-+++=|.
T Consensus 7 ~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~ 48 (60)
T d2cyya1 7 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIK 48 (60)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 999999982899999999998939999999999999889747
No 9
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=70.50 E-value=2.2 Score=21.37 Aligned_cols=41 Identities=32% Similarity=0.335 Sum_probs=30.5
Q ss_pred HHHHHHHHC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 899998707----895177889988489988988652144116813466
Q T0560 11 GKVWHALNE----ADGISIPELARKVNLSVESTALAVGWLARENKVVIE 55 (74)
Q Consensus 11 G~VW~~L~e----~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~ 55 (74)
-+||+.|.. .+..||.+|++..+.+ ..|+|+-.+.|.+.+.
T Consensus 6 ~~V~~~l~~~IP~G~v~TYg~iA~~~g~~----~RaVg~a~~~Np~~~~ 50 (81)
T d1mgta1 6 KKVYEWLTKNVKRGSVITYGDLAKALNTS----PRAVGGAMKRNPYPIV 50 (81)
T ss_dssp HHHHHHHHHHSCTTCCEEHHHHHHHTTSC----HHHHHHHHHTCSCTTT
T ss_pred HHHHHHHHHHCCCCCEEEHHHHHHHCCCC----HHHHHHHHHHCCCCCC
T ss_conf 99999999768999807499999883974----7999999985997442
No 10
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=69.47 E-value=3.2 Score=20.57 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078951778899884899889886521441168134
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
-+|=+.|.++...|+.+|++.+++|...+..-|-=|-.++=|.
T Consensus 8 ~~IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~ 50 (63)
T d2cg4a1 8 RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIIT 50 (63)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 9999999983899999999998939999999999999889857
No 11
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1u6ga3
Probab=68.61 E-value=3.1 Score=20.66 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=35.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999987078951778899884899889886521441168134664
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~ 56 (74)
.|=-+.|+...+|+.+|...+++++.++..++..|.+. ||.+..
T Consensus 199 ~ILllFN~~~~lt~~~l~~~~~i~~~~l~~~L~~L~~~-kil~~~ 242 (276)
T d1ldja3 199 AILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKS-KLLVLE 242 (276)
T ss_dssp HHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHT-TTEECS
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CEEEEC
T ss_conf 99998628997477899988588998999998887518-826642
No 12
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.94 E-value=2.6 Score=21.00 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCH-HHHHHHHHHHHCCCEEEEEE
Q ss_conf 7889999870789517788998848998-89886521441168134664
Q T0560 9 NAGKVWHALNEADGISIPELARKVNLSV-ESTALAVGWLARENKVVIER 56 (74)
Q Consensus 9 nAG~VW~~L~e~~~~s~~el~k~t~lsd-~el~lAiGWLarE~KI~~~~ 56 (74)
.-.+|.++|-+.++.+.-.|+|..|++. +|+...+==|.|.+++.=+.
T Consensus 6 ~eekI~~~L~~~g~~~Al~iak~lGl~kakeVN~~LY~L~k~g~v~k~~ 54 (73)
T d1xmka1 6 IKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQG 54 (73)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCC
T ss_conf 9999999999759843999999949970788759999999877801279
No 13
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=66.51 E-value=2.4 Score=21.16 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=33.3
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 8999987078---95177889988489988988652144116813466
Q T0560 11 GKVWHALNEA---DGISIPELARKVNLSVESTALAVGWLARENKVVIE 55 (74)
Q Consensus 11 G~VW~~L~e~---~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~ 55 (74)
-+||+.|.+- +..||.+|++..+.+.. ..|+|+-.+.|.+.+.
T Consensus 6 ~~V~~~l~~Ip~G~v~TYg~iA~~~g~~~a--~RaVg~a~~~Np~~~~ 51 (84)
T d1sfea1 6 QQVWQALRTIPCGETVSYQQLANAIGKPKA--VRAVASACAANKLAIV 51 (84)
T ss_dssp HHHHHHHTTSCTTCCEEHHHHHHHTTCTTC--HHHHHHHHHTCCBBTT
T ss_pred HHHHHHHHCCCCCCEEEHHHHHHHHCCCCC--HHHHHHHHHCCCCCCC
T ss_conf 999999974999873629999998188651--9999999960998774
No 14
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=65.86 E-value=4 Score=20.03 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=39.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 99998707895177889988489988988652144116813466407
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKN 58 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~ 58 (74)
++-..|.+++..+..+|+|..|++.+++..++==|.|.|+|.-+...
T Consensus 14 ~~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~t 60 (70)
T d1sfua_ 14 KEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 60 (70)
T ss_dssp HHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCC
T ss_conf 99974587777049999999598898988999999987985127996
No 15
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=65.46 E-value=5.6 Score=19.29 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=46.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEECC
Q ss_conf 99998707895177889988489988988652144116813466407737885368
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNEG 67 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~~ 67 (74)
.|-..|...++.++.+|....+++..-+---+.-|.+-|=|..++.....|.++.-
T Consensus 35 ~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~~ 90 (108)
T d1u2wa1 35 KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGD 90 (108)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECH
T ss_conf 99999986899149999988855725799999999988945899888889999887
No 16
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=61.94 E-value=4.8 Score=19.62 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078--951778899884899889886521441168134
Q T0560 11 GKVWHALNEA--DGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~--~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
.+|-.++.+. .+.++++++..++++.+++-.-+..|+|+|.+.
T Consensus 10 ~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lv 54 (64)
T d1lvaa3 10 KDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV 54 (64)
T ss_dssp HHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 999999998699999599999891999999999999999789779
No 17
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=59.93 E-value=7.1 Score=18.73 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 5567889999870-78951778899884899889886521441168134664
Q T0560 6 VGANAGKVWHALN-EADGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (74)
Q Consensus 6 IG~nAG~VW~~L~-e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~ 56 (74)
+...++.|+-+|. ..+++|..+|++.++++..-+..++-=|.+.|=|.-..
T Consensus 24 l~~~~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999998489892899999986777024999999999889979987
No 18
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=59.43 E-value=7.2 Score=18.68 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=44.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE---CCEEEEEE
Q ss_conf 889999870789517788998848998898865214411681346640---77378853
Q T0560 10 AGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK---NGLIEIYN 65 (74)
Q Consensus 10 AG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~---~g~l~v~~ 65 (74)
-=.|-.+|..+++.++++|++..+++..-+...+.-|-+.|=|..+.. ....++++
T Consensus 18 r~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~L 76 (100)
T d1ub9a_ 18 RLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEI 76 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred HHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCC
T ss_conf 99999876047990199999998625432309999882310368887576776534557
No 19
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.98 E-value=5 Score=19.53 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9998707895177889988489988988652144116813466
Q T0560 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIE 55 (74)
Q Consensus 13 VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~ 55 (74)
|=-+.|+...+|+++|...++++++++...|-.|.+- |+.+.
T Consensus 200 ILllFN~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~-kll~~ 241 (276)
T d1ldja3 200 ILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKS-KLLVL 241 (276)
T ss_dssp HHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHT-TTEEC
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CEEEE
T ss_conf 9986157776579999998791999999999999868-97785
No 20
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} SCOP: d1qnta1 d1yfhc1 d1yfhb1 d1t39b1 d1eh6a1 d1eh8a1 d1t38a1 d1sfea1
Probab=57.93 E-value=5.4 Score=19.37 Aligned_cols=40 Identities=33% Similarity=0.341 Sum_probs=28.9
Q ss_pred HHHHHHHHC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 899998707----89517788998848998898865214411681346
Q T0560 11 GKVWHALNE----ADGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 11 G~VW~~L~e----~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
-+||+.|.. .+..||.+|++..+.+. .|+|.-.+.|.+.+
T Consensus 6 ~~V~~~l~~~IP~G~v~tYg~iA~~~g~~~----raVg~al~~np~~~ 49 (81)
T d1mgta1 6 KKVYEWLTKNVKRGSVITYGDLAKALNTSP----RAVGGAMKRNPYPI 49 (81)
T ss_dssp HHHHHHHHHHSCTTCCEEHHHHHHHTTSCH----HHHHHHHHTCSCTT
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHCCCCH----HHHHHHHHCCCCCC
T ss_conf 999999984189985045889997707840----68999987078885
No 21
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=57.06 E-value=6.4 Score=18.96 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=41.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 899998707895177889988489988988652144116813466407
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKN 58 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~ 58 (74)
-.||++..+.+..+.++|++..+.+..-+--+|.=|+++|=|..+.-.
T Consensus 10 k~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~~Y~ 57 (61)
T d2ev0a1 10 EQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYR 57 (61)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCC
T ss_conf 999999835897509999999589951599999999888997770677
No 22
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=56.96 E-value=5.3 Score=19.40 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 5177889988489988988652144116813466407
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKN 58 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~ 58 (74)
+.|.++|+..+|.+.+-+..++..|-+||-|.+..+.
T Consensus 30 ~~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~~~~ 66 (80)
T d1ft9a1 30 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 66 (80)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 7899999999798899999999999988988978999
No 23
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=56.77 E-value=5.9 Score=19.15 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 5177889988489988988652144116813466407737885
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
++|.++|+..+|.+.+-+...+.-|.+++-|.++ .+.++|.
T Consensus 30 ~lt~~elA~~~g~sretvsr~l~~l~~~glI~~~--~~~i~I~ 70 (80)
T d3e5ua1 30 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKK--KNKIIVY 70 (80)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC------CEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCEEEEC
T ss_conf 7999999999887788999999999989969963--9999986
No 24
>d1prtd_ b.40.2.1 (D:) Pertussis toxin S4 subunit {Bordetella pertussis [TaxId: 520]}
Probab=46.14 E-value=2.4 Score=21.17 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=12.0
Q ss_pred ECCEEEEEECCEEEEECC
Q ss_conf 077378853682655419
Q T0560 57 KNGLIEIYNEGHFDFSFG 74 (74)
Q Consensus 57 ~~g~l~v~~~~n~~F~fg 74 (74)
+-|-.--|.+.+|+||||
T Consensus 36 klgaaasspdahvpfcfg 53 (110)
T d1prtd_ 36 KLGAAASSPDAHVPFCFG 53 (110)
T ss_dssp ETTCCTTSGGGCEEEEEE
T ss_pred HHCCCCCCCCCCCCCEEC
T ss_conf 643244798874651106
No 25
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=45.85 E-value=12 Score=17.47 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=29.3
Q ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9987078951778899884899889886521441
Q T0560 14 WHALNEADGISIPELARKVNLSVESTALAVGWLA 47 (74)
Q Consensus 14 W~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLa 47 (74)
-+.|...++.|...|+.+++-+.+++..++.=+.
T Consensus 8 Lr~LA~G~PVs~~~LA~alg~~~~eV~~aL~~~p 41 (60)
T d1s6la1 8 LRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 41 (60)
T ss_dssp HHHHHTTCCBCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 9999479985899999895899999999998588
No 26
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.73 E-value=11 Score=17.67 Aligned_cols=42 Identities=33% Similarity=0.330 Sum_probs=31.3
Q ss_pred HHHHHHHHCC---CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 8999987078---9517788998848998898865214411681346
Q T0560 11 GKVWHALNEA---DGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (74)
Q Consensus 11 G~VW~~L~e~---~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~ 54 (74)
-.||++|..- ...||.+|+++.+.+.. ..|+|+-.+.|.+.+
T Consensus 6 ~~vw~~l~~IP~G~v~TYg~iA~~~g~p~a--aRaVg~a~~~Np~~~ 50 (85)
T d1qnta1 6 QVLWKLLKVVKFGEVISYQQLAALAGNPKA--ARAVGGAMRGNPVPI 50 (85)
T ss_dssp HHHHHHHHHCCTTCCEEHHHHHHHTTCTTC--HHHHHHHHTTCSSBT
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHCCCCCH--HHHHHHHHHHCCCCC
T ss_conf 999999926999983639999977377641--899999998099877
No 27
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=45.61 E-value=12 Score=17.45 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=40.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8999987078951778899884899889886521441168134664
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~ 56 (74)
-.||++..+.+....++|++..+.+..-+.-++.=|.++|=|..+.
T Consensus 12 ~~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~ 57 (63)
T d2isya1 12 RTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 57 (63)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 9999998558977099999996899443999999999888988768
No 28
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=45.23 E-value=13 Score=17.41 Aligned_cols=49 Identities=20% Similarity=0.110 Sum_probs=38.7
Q ss_pred HHHHHHHHH-HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 788999987-0789517788998848998898865214411681346640
Q T0560 9 NAGKVWHAL-NEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 9 nAG~VW~~L-~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
..-.|...| ..++++|.++|++.++++..-+...+--|...|=|.-...
T Consensus 22 ~~~~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~ 71 (109)
T d2d1ha1 22 TDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999997698988999999988567699999999997899798526
No 29
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.64 E-value=14 Score=17.11 Aligned_cols=48 Identities=15% Similarity=0.001 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 8999987078951778899884899889886521441168134664077
Q T0560 11 GKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNG 59 (74)
Q Consensus 11 G~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g 59 (74)
=+|-++|.+++.+|.++|++..+.|..-+.-.|-=|-.+|= .++..-|
T Consensus 8 ~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~-~I~~~~g 55 (63)
T d1biaa1 8 LKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGV-DVFTVPG 55 (63)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTC-CCEEETT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-CEEEECC
T ss_conf 99999999789587999999989399999999999998799-3797079
No 30
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=40.41 E-value=15 Score=17.00 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 889999870789517788998848998898865214411681346640
Q T0560 10 AGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 10 AG~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
.-.|-++|. .+++|+.+|++.++++..-+.--|-=|.+.|-|...+.
T Consensus 21 R~~Il~~L~-~~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv~~~~~ 67 (190)
T d1ulya_ 21 RRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRT 67 (190)
T ss_dssp HHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999998-19987999999989199999999999998898389986
No 31
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.20 E-value=16 Score=16.88 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEE
Q ss_conf 517788998848998898865214411681346640773788
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEI 63 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v 63 (74)
++|..+|+...|.+.+-+...+.-|-+++-|.++. +.+.|
T Consensus 29 ~lt~~~lA~~~G~sRetvsr~L~~l~~~glI~~~~--~~I~I 68 (69)
T d1i5za1 29 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG--KTIVV 68 (69)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--TEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC--CEEEE
T ss_conf 78999999897997999999999999889889769--99997
No 32
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.84 E-value=17 Score=16.69 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8999987078-95177889988489988988652144
Q T0560 11 GKVWHALNEA-DGISIPELARKVNLSVESTALAVGWL 46 (74)
Q Consensus 11 G~VW~~L~e~-~~~s~~el~k~t~lsd~el~lAiGWL 46 (74)
..|-+.|.+. +..|+++|+++|++..+|+..++--|
T Consensus 191 ~~il~~l~~~~~~isI~~is~~T~i~~~Dii~tL~~l 227 (271)
T d2giva1 191 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 227 (271)
T ss_dssp HHHHHHHC------CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 9999999736997209999998699889999999977
No 33
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=36.82 E-value=17 Score=16.69 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 5177889988489988988652144116813466407737885
Q T0560 22 GISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 22 ~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
+.|.++|+...|.+.+-+...+.-|.+++-|..+ .+.+.+.
T Consensus 29 ~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~--~~~i~I~ 69 (81)
T d2gaua1 29 YLSREELATLSNMTVSNAIRTLSTFVSERMLALD--GKRIKII 69 (81)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE--TTEEEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--CCEEEEC
T ss_conf 6899999999799899999999999989978963--9999983
No 34
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=35.47 E-value=18 Score=16.59 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=34.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 177889988489988988652144116813466407737885
Q T0560 23 ISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 23 ~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
.|.++|+...|.+.+-+..++.-|.++|=|.+ ..+.+.|.
T Consensus 28 lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~~--~~~~i~I~ 67 (73)
T d1zyba1 28 VKMDDLARCLDDTRLNISKTLNELQDNGLIEL--HRKEILIP 67 (73)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE--ETTEEEES
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--CCCEEEEC
T ss_conf 69999998979889999999999998898996--29999985
No 35
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.63 E-value=22 Score=16.12 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE--EEEECCEEEEEECCE
Q ss_conf 8951778899884899889886521441168134--664077378853682
Q T0560 20 ADGISIPELARKVNLSVESTALAVGWLARENKVV--IERKNGLIEIYNEGH 68 (74)
Q Consensus 20 ~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~--~~~~~g~l~v~~~~n 68 (74)
....+++.|++..+++.+++-.-|-=+-.+++|. +++.+|.+++...-+
T Consensus 28 Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~e~ 78 (84)
T d1ufma_ 28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCEEEECCCCC
T ss_conf 025669999999787999999999999856958999908999899778776
No 36
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.01 E-value=23 Score=16.06 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=35.6
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCE
Q ss_conf 8951-7788998848998898865214411681346640773
Q T0560 20 ADGI-SIPELARKVNLSVESTALAVGWLARENKVVIERKNGL 60 (74)
Q Consensus 20 ~~~~-s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~ 60 (74)
+.++ |..+|++..+.|..-+-.|+-.|..|+=|......|-
T Consensus 24 G~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~ 65 (74)
T d1hw1a1 24 GTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPT 65 (74)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEE
T ss_conf 499834999999989798999999999998891899808447
No 37
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.26 E-value=24 Score=15.99 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=24.5
Q ss_pred HHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999870-78951778899884899889886521
Q T0560 13 VWHALN-EADGISIPELARKVNLSVESTALAVG 44 (74)
Q Consensus 13 VW~~L~-e~~~~s~~el~k~t~lsd~el~lAiG 44 (74)
|-+.|. ..+..|+.+|.++|++..+|+..++-
T Consensus 196 i~~~l~~~~~~isi~~is~~T~i~~~Dii~tL~ 228 (273)
T d1fy7a_ 196 LITLLVEHQKEITIDEISSMTSMTTTDILHTAK 228 (273)
T ss_dssp HHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 999998579973399999860999999999998
No 38
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=24.73 E-value=29 Score=15.54 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHC------CC------CCCHHHHHHHHCCC-HHHHHHHHHHHHCCCEEEEEEECCEEEEE
Q ss_conf 455678899998707------89------51778899884899-88988652144116813466407737885
Q T0560 5 IVGANAGKVWHALNE------AD------GISIPELARKVNLS-VESTALAVGWLARENKVVIERKNGLIEIY 64 (74)
Q Consensus 5 ~IG~nAG~VW~~L~e------~~------~~s~~el~k~t~ls-d~el~lAiGWLarE~KI~~~~~~g~l~v~ 64 (74)
+.|-.|..++++-.. ++ ++|.++|+...|.+ .+-+...+..|-+++=|.+. .+.++|.
T Consensus 2 ~~G~va~~Ll~La~~~G~~~~~g~~i~~~~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~--~~~i~I~ 72 (100)
T d2bgca1 2 KLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK--NSCFYVQ 72 (100)
T ss_dssp HHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE--TTEEEES
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEC--CCEEEEE
T ss_conf 2339999999999983998999738705666999999883874488999999999879788975--9999992
No 39
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.49 E-value=29 Score=15.51 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC-CEEEEEE
Q ss_conf 9998707895177889988489988988652144116-8134664
Q T0560 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLARE-NKVVIER 56 (74)
Q Consensus 13 VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE-~KI~~~~ 56 (74)
|--+.|+...+|+.+|+..+++++.++..++-=|..- -+|....
T Consensus 196 ILl~fn~~~~~t~~~i~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 240 (273)
T d2hyec3 196 VLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKS 240 (273)
T ss_dssp HHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEET
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999754788776999999979199999999999873021056306
No 40
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.56 E-value=28 Score=15.58 Aligned_cols=30 Identities=7% Similarity=0.211 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 134556788999987078951778899884
Q T0560 3 KKIVGANAGKVWHALNEADGISIPELARKV 32 (74)
Q Consensus 3 k~~IG~nAG~VW~~L~e~~~~s~~el~k~t 32 (74)
-..|.-.+|..|+.|++..+--+.+.++..
T Consensus 31 ~~ei~k~~~~~Wk~ls~~eK~~y~~~a~~~ 60 (71)
T d1ckta_ 31 FSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60 (71)
T ss_dssp HHHHHHHHHHHHHTCCTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999999988689999999999999999
No 41
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=23.03 E-value=31 Score=15.36 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=44.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEEEC
Q ss_conf 9999870789517788998848998898865214411681346640773788536
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGLIEIYNE 66 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~l~v~~~ 66 (74)
+|-..|. .++.++.+|....+++..-+---+--|-+.|=|..++.-...|.++.
T Consensus 27 ~Il~~L~-~~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~ 80 (98)
T d1r1ta_ 27 RLLSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQ 80 (98)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred HHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC
T ss_conf 9999998-19967999999989298899999999998892489988798999988
No 42
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=22.81 E-value=31 Score=15.33 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=40.2
Q ss_pred HHHHH--HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 56788--9999870789517788998848998898865214411681346640
Q T0560 7 GANAG--KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (74)
Q Consensus 7 G~nAG--~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~ 57 (74)
|.+.. .|=..|...++.|.++|++.++++..-+...+-.|.+.|=|.....
T Consensus 27 glt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~ 79 (139)
T d2a61a1 27 GITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPD 79 (139)
T ss_dssp TCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEEC
T ss_conf 97999999999999769989999999839881442699999984572566321
No 43
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.65 E-value=32 Score=15.31 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHH-CC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 89999870-78-951778899884899889886521441
Q T0560 11 GKVWHALN-EA-DGISIPELARKVNLSVESTALAVGWLA 47 (74)
Q Consensus 11 G~VW~~L~-e~-~~~s~~el~k~t~lsd~el~lAiGWLa 47 (74)
..|-+.|. .+ ...|+.+|.++|++..+|+..++-.|-
T Consensus 191 ~~i~~~L~~~~~~~~si~dis~~T~i~~~Dii~tL~~l~ 229 (270)
T d2ozua1 191 SVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLR 229 (270)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 999999984799946699999986998889999999779
No 44
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=22.61 E-value=29 Score=15.51 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=33.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9998707895177889988489988988652144116813466
Q T0560 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIE 55 (74)
Q Consensus 13 VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~ 55 (74)
|-+.|.+ +++|-.||++.+++|..-+...+-=|..++-|.-.
T Consensus 4 Il~~i~~-~pisr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 4 ILKRIMK-SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp SHHHHHH-SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 9999997-89699999999893999999999999988987877
No 45
>d1ctta1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]}
Probab=21.56 E-value=33 Score=15.19 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=38.4
Q ss_pred HHHHHHHCC---CC---CCHHHHHHHHCCCHHHHHHHHHHHHCCCE----------EEEEEECCEEEEEECCEEEEE
Q ss_conf 999987078---95---17788998848998898865214411681----------346640773788536826554
Q T0560 12 KVWHALNEA---DG---ISIPELARKVNLSVESTALAVGWLARENK----------VVIERKNGLIEIYNEGHFDFS 72 (74)
Q Consensus 12 ~VW~~L~e~---~~---~s~~el~k~t~lsd~el~lAiGWLarE~K----------I~~~~~~g~l~v~~~~n~~F~ 72 (74)
.++..|.+. +. -.+.++++.++++++++.+++==+|++-- -....++|.+|. +.|++|.
T Consensus 19 ~l~p~l~~~~f~~~l~a~~v~~l~~~~~~~~~~l~~~ll~~A~~~AyaPyS~F~VGA~~~~~~G~iy~--G~NvE~~ 93 (150)
T d1ctta1 19 ALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYF--GANMEFI 93 (150)
T ss_dssp HHTTTTTSTTCCSEECHHHHHHHHHHSCCCHHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEEE--EECBCCT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEE--EECCCCC
T ss_conf 99998717636640198999989776089989999998899997077997888436889846997887--4322133
No 46
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}
Probab=21.04 E-value=34 Score=15.13 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHHHHHHHCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 8999987078--951778899884899889886521441168134
Q T0560 11 GKVWHALNEA--DGISIPELARKVNLSVESTALAVGWLARENKVV 53 (74)
Q Consensus 11 G~VW~~L~e~--~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~ 53 (74)
-..|++-.|. +.||+.+|.|.+++.-.-+-.-+-=|---+-++
T Consensus 11 ~~L~eA~~e~~g~~WSLaklsKra~~PMS~LRR~LTqL~~aGl~~ 55 (81)
T d2obpa1 11 LVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 55 (81)
T ss_dssp HHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 999998316899976388988661796899999999985068455
No 47
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.81 E-value=35 Score=15.10 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=39.1
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCE
Q ss_conf 78899998707-89517788998848998898865214411681346640773
Q T0560 9 NAGKVWHALNE-ADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGL 60 (74)
Q Consensus 9 nAG~VW~~L~e-~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~~~~g~ 60 (74)
.|=.|=.++.+ .+.+++++|+++++++..-++.-+.=|..+|-+.-.. +|.
T Consensus 6 r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~-~g~ 57 (75)
T d1mkma1 6 KAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK-DKR 57 (75)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT-TSC
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC-CCC
T ss_conf 9999999998579998999999997919999999999999889988899-997
No 48
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=20.61 E-value=35 Score=15.08 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99998707895177889988489988988652144116813466
Q T0560 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIE 55 (74)
Q Consensus 12 ~VW~~L~e~~~~s~~el~k~t~lsd~el~lAiGWLarE~KI~~~ 55 (74)
.|-..|++...-.-.||+.++++|+-..---+=-|-||+||.-.
T Consensus 4 ~Il~fl~~~~~~~T~EIAea~gvsaYQARyYL~~Lekegki~Rs 47 (73)
T d2htja1 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (73)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999884489637899999633899999999998771570148
Done!