Query T0561 JBP1 , Leishmania Tarentolae, 161 residues
Match_columns 161
No_of_seqs 4 out of 6
Neff 1.7
Searched_HMMs 22458
Date Wed May 26 17:42:29 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0561.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0561.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdu_B MUNC13-1, protein UNC-1 64.7 2 9E-05 22.5 1.5 18 25-42 2-19 (36)
2 2cql_A OK/SW-CL.103, 60S ribos 20.4 42 0.0019 14.1 2.8 22 84-105 68-89 (100)
3 2ac3_A MAP kinase-interacting 18.3 35 0.0015 14.6 1.3 10 120-129 152-161 (316)
4 3hjb_A Glucose-6-phosphate iso 14.6 57 0.0025 13.3 3.5 78 16-93 29-122 (574)
5 2ke4_A CDC42-interacting prote 12.5 65 0.0029 12.9 2.8 20 132-151 6-25 (98)
6 2jo8_A Serine/threonine-protei 11.6 70 0.0031 12.7 3.2 26 133-158 6-36 (51)
7 3eu6_A NS1, nonstructural prot 11.2 34 0.0015 14.7 -0.4 16 129-144 80-95 (215)
8 1wu3_I Interferon beta, IFN-be 11.1 72 0.0032 12.6 1.8 91 47-138 31-132 (161)
9 1zy4_A Serine/threonine-protei 10.7 65 0.0029 12.9 1.0 12 118-129 152-163 (303)
10 1f8y_A Nucleoside 2-deoxyribos 10.3 42 0.0019 14.1 -0.1 11 123-133 139-149 (157)
No 1
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, peptide, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane; NMR {Xenopus laevis}
Probab=64.67 E-value=2 Score=22.46 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999999
Q T0561 25 KQARARWLELVGKEWAHM 42 (161)
Q Consensus 25 ~qsR~hWL~LV~~eW~~~ 42 (161)
+|+|+||||-+.|---.+
T Consensus 2 s~Ara~WlRa~nKVrlQL 19 (36)
T 2kdu_B 2 SRAKANWLRAFNKVRMQL 19 (36)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 611568999999999999
No 2
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=20.37 E-value=42 Score=14.12 Aligned_cols=22 Identities=14% Similarity=-0.059 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5720135778899988627888
Q T0561 84 ALPKEEQAFWIMYAVHLSAACA 105 (161)
Q Consensus 84 ~~~~Ee~~FW~~~AaHL~~AC~ 105 (161)
...+..+++|+.|.+|+++...
T Consensus 68 ~~~k~~~a~~GT~RslI~NmI~ 89 (100)
T 2cql_A 68 WGNRKELATVRTICSHVQNMIK 89 (100)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHEE
T ss_conf 8758899998989999986525
No 3
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=18.33 E-value=35 Score=14.64 Aligned_cols=10 Identities=50% Similarity=0.939 Sum_probs=8.1
Q ss_pred EEEEECCCCC
Q ss_conf 0121012343
Q T0561 120 NVKLKDFNFG 129 (161)
Q Consensus 120 NVKLKDf~FG 129 (161)
.+||.||.++
T Consensus 152 ~~Kl~DFG~a 161 (316)
T 2ac3_A 152 PVKICDFDLG 161 (316)
T ss_dssp SEEECCTTCC
T ss_pred EEEEEECCCC
T ss_conf 4789861621
No 4
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: PG4; 1.50A {Vibrio cholerae}
Probab=14.63 E-value=57 Score=13.26 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HCCCCC-CC------------CHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 5299999999989999999999999997518610-000105-65------------31357889899999--99987441
Q T0561 16 ISAQLLDMWKQARARWLELVGKEWAHMLALNPER-KDFLWK-NQ------------SEMNSAFFDLCEVG--KQVMLGLL 79 (161)
Q Consensus 16 ~~~el~~mW~qsR~hWL~LV~~eW~~~~~~~PeR-t~F~W~-N~------------S~MN~AFFDLCeVa--KQ~M~Gll 79 (161)
|-|.-+.-|..-.+|.-++-...-..+.+.+|+| ++|++. +. .+.-..+++|.+-. ++-+-.+|
T Consensus 29 ~npt~~~aw~~L~~~~~~~~~~~l~~lf~~d~~R~~~~~~~~~~~l~~D~Sk~~i~~~~l~~L~~la~~~~l~~~i~~lf 108 (574)
T 3hjb_A 29 INPTQTQAWKALTAHFESAQDMDLKALFAQDSERFAKYSARFGQDILVDYSKNLVNAETMQHLFALAKETDLQSAITAMF 108 (574)
T ss_dssp CCGGGSHHHHHHHHHHHHHTTCCHHHHHHTCTTHHHHTEEEETTTEEEECCSSSCCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99878899999999998745998899976594789853743369889987799589999999999999788299999997
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 34345720135778
Q T0561 80 GKEVALPKEEQAFW 93 (161)
Q Consensus 80 ~ke~~~~~Ee~~FW 93 (161)
+-+.+|.+|+|+-+
T Consensus 109 ~Ge~iN~TE~R~vl 122 (574)
T 3hjb_A 109 KGEAINQTEDRAVL 122 (574)
T ss_dssp HTCCCBTTTTBCCC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 88977898880115
No 5
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=12.51 E-value=65 Score=12.88 Aligned_cols=20 Identities=25% Similarity=0.772 Sum_probs=13.6
Q ss_pred HHHHCCCCHHHHHHHHHHHH
Q ss_conf 22113894068899999887
Q T0561 132 RYFKDMPPEEKKRRMERKQR 151 (161)
Q Consensus 132 RY~KDMPpEEqeRR~~Rk~~ 151 (161)
--|-+||||-..+++..|..
T Consensus 6 ed~s~lPPeqRkkkL~~ki~ 25 (98)
T 2ke4_A 6 EDFSHLPPEQQRKRLQQQLE 25 (98)
T ss_dssp SCSSSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
T ss_conf 35566987999999999999
No 6
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=11.65 E-value=70 Score=12.71 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=21.5
Q ss_pred HHHCCCCHHHHHHHHH-----HHHHHHHHHH
Q ss_conf 2113894068899999-----8878988750
Q T0561 133 YFKDMPPEEKKRRMER-----KQRIEEARRH 158 (161)
Q Consensus 133 Y~KDMPpEEqeRR~~R-----k~~IEeARRr 158 (161)
++|....||-++|++. -++|||-|+|
T Consensus 6 fLk~ls~eeL~~Rl~sLD~~ME~EieeLr~R 36 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLALDPMMEQEIEEIRQK 36 (51)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9987579999999986668899999999999
No 7
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A
Probab=11.23 E-value=34 Score=14.69 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=13.3
Q ss_pred CCHHHHHCCCCHHHHH
Q ss_conf 3012211389406889
Q T0561 129 GGTRYFKDMPPEEKKR 144 (161)
Q Consensus 129 GGTRY~KDMPpEEqeR 144 (161)
-..||+.||..||-.|
T Consensus 80 pasryltdMtleEmSR 95 (215)
T 3eu6_A 80 PASRYLTDMTLEEMSR 95 (215)
T ss_dssp CCCCCEESSCHHHHHC
T ss_pred CCHHHHHHCCHHHHHH
T ss_conf 7005655356988634
No 8
>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} SCOP: a.26.1.3 PDB: 1ifa_A
Probab=11.10 E-value=72 Score=12.59 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=59.6
Q ss_pred CCHHCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH------HHHHHHCCH-HHHH
Q ss_conf 6100001056----5313578898999999998744134345720135778899988627------888751341-2320
Q T0561 47 PERKDFLWKN----QSEMNSAFFDLCEVGKQVMLGLLGKEVALPKEEQAFWIMYAVHLSA------ACAEELHME-VAMS 115 (161)
Q Consensus 47 PeRt~F~W~N----~S~MN~AFFDLCeVaKQ~M~Gll~ke~~~~~Ee~~FW~~~AaHL~~------AC~~e~~M~-~am~ 115 (161)
..|+||..-- +...--|-.-+-|+-.| ...+|..+..+.+=++.-+--|-..|+. +|..+.+-+ .+.+
T Consensus 31 k~r~dF~fP~e~~~q~Qk~~a~~v~~emlQq-if~LF~~~~ssa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~ 109 (161)
T 1wu3_I 31 TYRADFKIPMEMTEKMQKSYTAFAIQEMLQN-VFLVFRNNFSSTGWNETIVVRLLDELHQQTVFLKTVLEEKQEERLTWE 109 (161)
T ss_dssp CCSCCCCCCGGGGSCCCHHHHHHHHHHHHHH-HHHHTTSCCGGGTCCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHT
T ss_pred CCCCCCCCCHHHHHCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7678999948887403499999999999999-999985678711177899999999999999999999998644666667
Q ss_pred HHHHEEEEECCCCCCHHHHHCCC
Q ss_conf 22310121012343012211389
Q T0561 116 LRKLNVKLKDFNFGGTRYFKDMP 138 (161)
Q Consensus 116 m~KLNVKLKDf~FGGTRY~KDMP 138 (161)
.......+|.|-.+=++|||++-
T Consensus 110 ~~~~~L~lkkYF~rI~~yLk~K~ 132 (161)
T 1wu3_I 110 MSSTALHLKSYYWRVQRYLKLMK 132 (161)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 77533699999999999987279
No 9
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, amino-acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=10.73 E-value=65 Score=12.88 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=8.1
Q ss_pred HHEEEEECCCCC
Q ss_conf 310121012343
Q T0561 118 KLNVKLKDFNFG 129 (161)
Q Consensus 118 KLNVKLKDf~FG 129 (161)
.-+|||-||.+.
T Consensus 152 ~~~vKl~DFGla 163 (303)
T 1zy4_A 152 SRNVKIGDFGLA 163 (303)
T ss_dssp TSCEEECCCCCC
T ss_pred CCCEEEEECCCC
T ss_conf 999998465742
No 10
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=10.30 E-value=42 Score=14.08 Aligned_cols=11 Identities=64% Similarity=1.177 Sum_probs=0.0
Q ss_pred EECCCCCCHHH
Q ss_conf 10123430122
Q T0561 123 LKDFNFGGTRY 133 (161)
Q Consensus 123 LKDf~FGGTRY 133 (161)
||||||.-.|+
T Consensus 139 lkdfnfnkprf 149 (157)
T 1f8y_A 139 LKDFNFNKPRF 149 (157)
T ss_dssp TTTCCTTSCCC
T ss_pred HCCCCCCCCCC
T ss_conf 20366788663
Done!