Query T0561 JBP1 , Leishmania Tarentolae, 161 residues
Match_columns 161
No_of_seqs 4 out of 6
Neff 1.7
Searched_HMMs 11830
Date Wed May 26 17:44:45 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0561.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0561.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10987 DUF2806: Protein of u 43.0 8.3 0.0007 16.8 3.1 61 45-143 34-94 (219)
2 PF06292 DUF1041: Domain of Un 28.9 10 0.00086 16.2 1.7 14 91-104 90-103 (106)
3 PF11304 DUF3106: Protein of u 23.2 13 0.0011 15.5 1.4 10 134-143 74-83 (107)
4 PF04553 Tis11B_N: Tis11B like 19.6 15 0.0013 15.2 1.1 14 57-71 2-15 (109)
5 PF11240 DUF3042: Protein of u 17.4 19 0.0016 14.5 1.2 17 138-160 33-49 (54)
6 PF00982 Glyco_transf_20: Glyc 17.1 25 0.0021 13.8 1.7 42 64-110 180-221 (473)
7 PF10265 DUF2217: Uncharacteri 16.8 26 0.0022 13.6 3.3 39 67-108 319-357 (514)
8 PF04838 Baculo_LEF5: Baculovi 15.1 15 0.0013 15.1 0.3 15 119-133 30-44 (159)
9 PF12478 DUF3697: Ubiquitin-as 15.1 18 0.0015 14.7 0.6 24 107-130 9-32 (33)
10 PF02603 Hpr_kinase_N: HPr Ser 13.7 30 0.0026 13.2 1.5 24 126-149 54-77 (127)
No 1
>PF10987 DUF2806: Protein of unknown function (DUF2806)
Probab=43.01 E-value=8.3 Score=16.80 Aligned_cols=61 Identities=31% Similarity=0.441 Sum_probs=42.0
Q ss_pred CCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEE
Q ss_conf 18610000105653135788989999999987441343457201357788999886278887513412320223101210
Q T0561 45 LNPERKDFLWKNQSEMNSAFFDLCEVGKQVMLGLLGKEVALPKEEQAFWIMYAVHLSAACAEELHMEVAMSLRKLNVKLK 124 (161)
Q Consensus 45 ~~PeRt~F~W~N~S~MN~AFFDLCeVaKQ~M~Gll~ke~~~~~Ee~~FW~~~AaHL~~AC~~e~~M~~am~m~KLNVKLK 124 (161)
...+..|.-|- ..|||+|+ ..+..+=|..|+-- -+.|+.-|++.|++-|.+
T Consensus 34 ~~~~~~D~DWl------~rFf~~A~-------------~isn~~mQ~LWakI-------LA~Ei~~PGs~S~rtL~~--- 84 (219)
T PF10987_consen 34 VSGEPLDPDWL------YRFFDMAE-------------DISNEEMQELWAKI-------LAGEITNPGSFSLRTLDT--- 84 (219)
T ss_pred CCCCCCCHHHH------HHHHHHHH-------------HHCHHHHHHHHHHH-------HHHHHCCCCCCCHHHHHH---
T ss_conf 36899985799------99999998-------------75619999999999-------998724898757899999---
Q ss_pred CCCCCCHHHHHCCCCHHHH
Q ss_conf 1234301221138940688
Q T0561 125 DFNFGGTRYFKDMPPEEKK 143 (161)
Q Consensus 125 Df~FGGTRY~KDMPpEEqe 143 (161)
||+|-+.|-+
T Consensus 85 ---------Lk~mt~~eA~ 94 (219)
T PF10987_consen 85 ---------LKSMTKREAQ 94 (219)
T ss_pred ---------HHHCCHHHHH
T ss_conf ---------9717999999
No 2
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This domain is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=28.90 E-value=10 Score=16.24 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 77889998862788
Q T0561 91 AFWIMYAVHLSAAC 104 (161)
Q Consensus 91 ~FW~~~AaHL~~AC 104 (161)
.||++||+-+++|-
T Consensus 90 ~~WsLfa~Dm~~aL 103 (106)
T PF06292_consen 90 TFWSLFAVDMDYAL 103 (106)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999899998
No 3
>PF11304 DUF3106: Protein of unknown function (DUF3106)
Probab=23.17 E-value=13 Score=15.46 Aligned_cols=10 Identities=50% Similarity=1.271 Sum_probs=5.8
Q ss_pred HHCCCCHHHH
Q ss_conf 1138940688
Q T0561 134 FKDMPPEEKK 143 (161)
Q Consensus 134 ~KDMPpEEqe 143 (161)
|+.+||++++
T Consensus 74 ~~~Lpp~~r~ 83 (107)
T PF11304_consen 74 FKSLPPEQRQ 83 (107)
T ss_pred HHCCCHHHHH
T ss_conf 8708999999
No 4
>PF04553 Tis11B_N: Tis11B like protein, N terminus; InterPro: IPR007635 All proteins of containing this domain also contain a tandem repeat of CCCH zinc fingers (IPR000571 from INTERPRO). Tis11B, Tis11D and their homologues are thought to be regulatory proteins involved in the response to growth factors . Tis11B (Q07352 from SWISSPROT) is thought to be involved in calcium signalling-induced apoptosis in B cells . The function of this N-terminal domain is unknown.
Probab=19.55 E-value=15 Score=15.19 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 531357889899999
Q T0561 57 QSEMNSAFFDLCEVG 71 (161)
Q Consensus 57 ~S~MN~AFFDLCeVa 71 (161)
+++|-++|||+ ||-
T Consensus 2 SttllSaF~D~-e~L 15 (109)
T PF04553_consen 2 STTLLSAFYDI-EVL 15 (109)
T ss_pred CCCHHHHHHHH-HHH
T ss_conf 42023334548-988
No 5
>PF11240 DUF3042: Protein of unknown function (DUF3042)
Probab=17.38 E-value=19 Score=14.55 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 94068899999887898875068
Q T0561 138 PPEEKKRRMERKQRIEEARRHGM 160 (161)
Q Consensus 138 PpEEqeRR~~Rk~~IEeARRr~~ 160 (161)
|.|+||- .|||-|++++
T Consensus 33 P~e~ke~------~ieenRk~A~ 49 (54)
T PF11240_consen 33 PIEEKEE------FIEENRKKAA 49 (54)
T ss_pred CHHHHHH------HHHHHHHHHH
T ss_conf 1888999------9999889987
No 6
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells . OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast .; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1gz5_C 1uqu_B 1uqt_B.
Probab=17.10 E-value=25 Score=13.79 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89899999999874413434572013577889998862788875134
Q T0561 64 FFDLCEVGKQVMLGLLGKEVALPKEEQAFWIMYAVHLSAACAEELHM 110 (161)
Q Consensus 64 FFDLCeVaKQ~M~Gll~ke~~~~~Ee~~FW~~~AaHL~~AC~~e~~M 110 (161)
.|-..-+.++++-|+|+-....=-. --|+.|.-.+|..-++.
T Consensus 180 ifr~LP~r~~iL~glL~aDlIGF~t-----~~y~~~Fl~~~~~~l~~ 221 (473)
T PF00982_consen 180 IFRCLPWREEILRGLLGADLIGFQT-----FDYARNFLSCCRRLLGL 221 (473)
T ss_dssp HHTTSTTHHHHHHHHTTSSEE---S-----HHHHHHHHHHHHHHS-E
T ss_pred HHHHCCCHHHHHHHHHCCCEEEEEC-----HHHHHHHHHHHHHHCCC
T ss_conf 9975963899999986189799965-----89999999999997097
No 7
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217)
Probab=16.83 E-value=26 Score=13.62 Aligned_cols=39 Identities=33% Similarity=0.396 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998744134345720135778899988627888751
Q T0561 67 LCEVGKQVMLGLLGKEVALPKEEQAFWIMYAVHLSAACAEEL 108 (161)
Q Consensus 67 LCeVaKQ~M~Gll~ke~~~~~Ee~~FW~~~AaHL~~AC~~e~ 108 (161)
++|||+|+..+|+-+-..+||. |-..|-.-|++.--.++
T Consensus 319 ~~~~Gr~~l~~ll~~a~k~p~~---F~~~y~~ml~~~~~~~~ 357 (514)
T PF10265_consen 319 LAEVGRQMLSDLLCKANKDPKD---FLEAYEEMLEYLENPDN 357 (514)
T ss_pred HHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHCCCC
T ss_conf 4975489999999975798789---99999999999838540
No 8
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription
Probab=15.11 E-value=15 Score=15.10 Aligned_cols=15 Identities=53% Similarity=0.589 Sum_probs=9.8
Q ss_pred HEEEEECCCCCCHHH
Q ss_conf 101210123430122
Q T0561 119 LNVKLKDFNFGGTRY 133 (161)
Q Consensus 119 LNVKLKDf~FGGTRY 133 (161)
-|||-|.|||-||.-
T Consensus 30 ~nVKNkTFNF~nTGH 44 (159)
T PF04838_consen 30 KNVKNKTFNFANTGH 44 (159)
T ss_pred CCCCCCEEECCCCCH
T ss_conf 211347320477762
No 9
>PF12478 DUF3697: Ubiquitin-associated protein 2
Probab=15.05 E-value=18 Score=14.71 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=19.8
Q ss_pred HHCCHHHHHHHHHEEEEECCCCCC
Q ss_conf 513412320223101210123430
Q T0561 107 ELHMEVAMSLRKLNVKLKDFNFGG 130 (161)
Q Consensus 107 e~~M~~am~m~KLNVKLKDf~FGG 130 (161)
-.-||+++..--|||..--.+||.
T Consensus 9 AVEMPGs~~i~~L~vQfgal~fGs 32 (33)
T PF12478_consen 9 AVEMPGSADIDGLDVQFGALDFGS 32 (33)
T ss_pred HHCCCCCCCCCCEEEEECCCCCCC
T ss_conf 732788777773045632111357
No 10
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria . This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes . X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains . ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1ko7_A 1knx_A.
Probab=13.71 E-value=30 Score=13.22 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.5
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 234301221138940688999998
Q T0561 126 FNFGGTRYFKDMPPEEKKRRMERK 149 (161)
Q Consensus 126 f~FGGTRY~KDMPpEEqeRR~~Rk 149 (161)
+.-.-..|++.+++|+++.|+++=
T Consensus 54 lG~~E~~yl~~l~~e~r~~~~~~l 77 (127)
T PF02603_consen 54 LGNTELAYLETLSEEERKERLEKL 77 (127)
T ss_dssp E--CCHHHHCCS-HHHHHHHHHHH
T ss_pred ECHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 868999999968999999999998
Done!