Query T0561 JBP1 , Leishmania Tarentolae, 161 residues
Match_columns 161
No_of_seqs 4 out of 6
Neff 1.7
Searched_HMMs 15564
Date Wed May 26 17:43:45 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0561.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0561.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j01h1 d.141.1.1 (H:12-82) Ri 31.4 18 0.0012 15.4 2.8 22 84-105 45-66 (71)
2 d1rl6a1 d.141.1.1 (A:7-81) Rib 29.2 20 0.0013 15.2 2.7 22 84-105 49-70 (75)
3 d2qamg1 d.141.1.1 (G:1-81) Rib 28.5 20 0.0013 15.2 2.5 22 84-105 55-76 (81)
4 d2zjre2 d.141.1.1 (E:5-82) Rib 23.0 26 0.0016 14.5 2.6 21 85-105 53-73 (78)
5 d2cqla1 d.141.1.1 (A:1-87) Rib 22.9 26 0.0016 14.4 2.8 23 83-105 60-82 (87)
6 d1vqoe1 d.141.1.1 (E:1-79) Rib 20.4 29 0.0019 14.1 2.5 21 85-105 54-74 (79)
7 d1wu3i_ a.26.1.3 (I:) Interfer 13.3 43 0.0028 13.0 1.8 90 48-138 32-132 (161)
8 d1knxa1 c.98.2.1 (A:1-132) HPr 11.8 29 0.0019 14.1 0.3 21 129-149 59-79 (132)
9 d1n9wa2 d.104.1.1 (A:111-414) 10.6 44 0.0028 12.9 0.9 25 137-161 244-275 (304)
10 d1knxa1 c.98.2.1 (A:1-132) HPr 9.8 38 0.0025 13.3 0.3 25 126-150 56-80 (132)
No 1
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=31.37 E-value=18 Score=15.41 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5720135778899988627888
Q T0561 84 ALPKEEQAFWIMYAVHLSAACA 105 (161)
Q Consensus 84 ~~~~Ee~~FW~~~AaHL~~AC~ 105 (161)
...+...++|+.+.+|++++..
T Consensus 45 ~~~k~~~a~~GT~rsli~NmI~ 66 (71)
T d2j01h1 45 SDERRHKSLHGLTRTLIANAVK 66 (71)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHE
T ss_conf 9984889999999999987515
No 2
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=29.17 E-value=20 Score=15.17 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5720135778899988627888
Q T0561 84 ALPKEEQAFWIMYAVHLSAACA 105 (161)
Q Consensus 84 ~~~~Ee~~FW~~~AaHL~~AC~ 105 (161)
...+...++|+.|.+|+++...
T Consensus 49 ~~~k~~~al~GT~rsli~Nmi~ 70 (75)
T d1rl6a1 49 SDEKHHRALHGTTRSLLANMVE 70 (75)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCE
T ss_conf 9967789999999999987415
No 3
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=28.52 E-value=20 Score=15.16 Aligned_cols=22 Identities=9% Similarity=-0.269 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5720135778899988627888
Q T0561 84 ALPKEEQAFWIMYAVHLSAACA 105 (161)
Q Consensus 84 ~~~~Ee~~FW~~~AaHL~~AC~ 105 (161)
...++..++|+.+.+|++++..
T Consensus 55 ~~~k~~~a~~GT~rsli~NmI~ 76 (81)
T d2qamg1 55 DGYADGWAQAGTARALLNSMVI 76 (81)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHEE
T ss_conf 9975689999999999987406
No 4
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=22.95 E-value=26 Score=14.45 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 720135778899988627888
Q T0561 85 LPKEEQAFWIMYAVHLSAACA 105 (161)
Q Consensus 85 ~~~Ee~~FW~~~AaHL~~AC~ 105 (161)
..++..+.|+.|.+|+++...
T Consensus 53 ~~k~~~a~~GT~rsli~Nmi~ 73 (78)
T d2zjre2 53 DAQKHRALHGLTRTLVANAVK 73 (78)
T ss_dssp CSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHEE
T ss_conf 887789999999999987406
No 5
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.89 E-value=26 Score=14.45 Aligned_cols=23 Identities=13% Similarity=-0.094 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45720135778899988627888
Q T0561 83 VALPKEEQAFWIMYAVHLSAACA 105 (161)
Q Consensus 83 ~~~~~Ee~~FW~~~AaHL~~AC~ 105 (161)
....+..++.|+.+.+|+++...
T Consensus 60 ~~~~k~~~a~~GT~rslI~Nmi~ 82 (87)
T d2cqla1 60 WWGNRKELATVRTICSHVQNMIK 82 (87)
T ss_dssp CSSSTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHEE
T ss_conf 78777787787879999986215
No 6
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=20.36 E-value=29 Score=14.12 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 720135778899988627888
Q T0561 85 LPKEEQAFWIMYAVHLSAACA 105 (161)
Q Consensus 85 ~~~Ee~~FW~~~AaHL~~AC~ 105 (161)
..+...++|+.|.+|+++...
T Consensus 54 ~~k~~~a~~GT~rsli~NmI~ 74 (79)
T d1vqoe1 54 DNAKTMSTIGTFQSHIENMFH 74 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHEE
T ss_conf 643005668989999987425
No 7
>d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.25 E-value=43 Score=13.02 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=59.9
Q ss_pred CHHCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH------HHHHHHCCH-HHHHH
Q ss_conf 100001056----5313578898999999998744134345720135778899988627------888751341-23202
Q T0561 48 ERKDFLWKN----QSEMNSAFFDLCEVGKQVMLGLLGKEVALPKEEQAFWIMYAVHLSA------ACAEELHME-VAMSL 116 (161)
Q Consensus 48 eRt~F~W~N----~S~MN~AFFDLCeVaKQ~M~Gll~ke~~~~~Ee~~FW~~~AaHL~~------AC~~e~~M~-~am~m 116 (161)
.|+||..-- +...--|-.-+-|+-.| ...+|..+..+.+=++.-+--|-..|+. +|..+.+-+ .+.+.
T Consensus 32 ~r~dF~fP~e~~~q~Qk~~a~~v~~emlQq-if~LF~~~~ssa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~ 110 (161)
T d1wu3i_ 32 YRADFKIPMEMTEKMQKSYTAFAIQEMLQN-VFLVFRNNFSSTGWNETIVVRLLDELHQQTVFLKTVLEEKQEERLTWEM 110 (161)
T ss_dssp CSCCCCCCGGGGSCCCHHHHHHHHHHHHHH-HHHHTTSCCGGGTCCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 678999938887502399999999999999-9999866787133778999999999999999999999986446666677
Q ss_pred HHHEEEEECCCCCCHHHHHCCC
Q ss_conf 2310121012343012211389
Q T0561 117 RKLNVKLKDFNFGGTRYFKDMP 138 (161)
Q Consensus 117 ~KLNVKLKDf~FGGTRY~KDMP 138 (161)
......||.|-.+=+.|||+.-
T Consensus 111 ~~~~L~lkkYF~rI~~yLk~K~ 132 (161)
T d1wu3i_ 111 SSTALHLKSYYWRVQRYLKLMK 132 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7434799999999999987279
No 8
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=11.81 E-value=29 Score=14.07 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=17.0
Q ss_pred CCHHHHHCCCCHHHHHHHHHH
Q ss_conf 301221138940688999998
Q T0561 129 GGTRYFKDMPPEEKKRRMERK 149 (161)
Q Consensus 129 GGTRY~KDMPpEEqeRR~~Rk 149 (161)
+-..|++.+++|+++.++++=
T Consensus 59 ~E~~Yl~~l~~e~r~~~l~~l 79 (132)
T d1knxa1 59 REFGFLSQKTLVEQQQILHNL 79 (132)
T ss_dssp HHHHHHTTSCHHHHTTTHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999968999999999998
No 9
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=10.63 E-value=44 Score=12.94 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHH-HH------HHHHHCCC
Q ss_conf 894068899999887-89------88750689
Q T0561 137 MPPEEKKRRMERKQR-IE------EARRHGMP 161 (161)
Q Consensus 137 MPpEEqeRR~~Rk~~-IE------eARRr~~~ 161 (161)
--|++|.+|++.+.- .| +|++.|||
T Consensus 244 ~d~~~l~~r~~~~~~~~e~~~~yl~al~~G~P 275 (304)
T d1n9wa2 244 HRYEELLESLKAKGMDPEAFHGYLEVFKYGMP 275 (304)
T ss_dssp CCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCC
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 89999999999759898899999999765999
No 10
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=9.84 E-value=38 Score=13.33 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=18.7
Q ss_pred CCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 2343012211389406889999988
Q T0561 126 FNFGGTRYFKDMPPEEKKRRMERKQ 150 (161)
Q Consensus 126 f~FGGTRY~KDMPpEEqeRR~~Rk~ 150 (161)
+.-+-..|+..+++|+++.++++=.
T Consensus 56 lG~~E~~yl~~l~~~~r~~~l~~l~ 80 (132)
T d1knxa1 56 LGKREFGFLSQKTLVEQQQILHNLL 80 (132)
T ss_dssp ECHHHHHHHTTSCHHHHTTTHHHHH
T ss_pred ECCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 4327898875589989999999985
Done!