Query T0562 CmR116, , 123 residues
Match_columns 123
No_of_seqs 106 out of 630
Neff 7.6
Searched_HMMs 15564
Date Wed May 26 17:45:36 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0562.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0562.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqza1 d.224.1.3 (A:242-329) 63.5 4.6 0.0003 18.5 3.9 22 16-37 14-35 (88)
2 d1x2ga1 d.224.1.3 (A:247-337) 62.0 5.1 0.00033 18.2 3.9 22 16-37 14-35 (91)
3 d1ogpa1 b.1.18.6 (A:263-389) S 42.3 11 0.00069 16.5 3.0 37 1-37 17-55 (127)
4 d1zjca1 e.60.1.1 (A:3-415) Ami 37.6 13 0.00082 16.1 2.8 20 19-38 278-297 (413)
5 d1zjca1 e.60.1.1 (A:3-415) Ami 37.1 13 0.00085 16.0 2.8 19 20-38 279-297 (413)
6 d1ua7a1 b.71.1.1 (A:348-425) B 35.0 12 0.00076 16.2 2.3 24 1-33 42-65 (78)
7 d1su0b_ d.224.1.2 (B:) IscU ho 34.2 16 0.001 15.6 3.9 26 16-41 35-60 (136)
8 d2a9da1 b.1.18.6 (A:344-466) S 28.6 20 0.0013 15.0 3.1 37 1-37 17-55 (123)
9 d1xjsa_ d.224.1.2 (A:) NifU {B 27.3 21 0.0013 14.9 2.8 36 5-41 31-66 (147)
10 d1wuil1 e.18.1.1 (L:19-552) Ni 23.6 25 0.0016 14.5 6.4 21 18-38 17-37 (534)
11 d2ayia1 e.60.1.1 (A:3-408) Ami 22.1 27 0.0017 14.4 2.4 19 20-38 276-294 (406)
12 d1vlfm2 c.81.1.1 (M:1-728) Tra 21.6 27 0.0018 14.3 5.9 20 64-83 110-129 (728)
13 d1e9yb1 b.92.1.1 (B:1-131,B:43 20.0 30 0.0019 14.1 3.6 21 16-36 78-98 (180)
No 1
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=63.53 E-value=4.6 Score=18.46 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.5
Q ss_pred CCCEEEEEEEEECCEEEEEEEE
Q ss_conf 8867899999758988888888
Q T0562 16 SGWKDTVTIEVKNGKIVSVDWN 37 (123)
Q Consensus 16 ~g~~~~v~vtvkdgkI~~v~~~ 37 (123)
.||.+.+.+.|++|+|.+|.+-
T Consensus 14 ~~G~vev~l~V~~G~I~~iki~ 35 (88)
T d1vqza1 14 TSGKVEVFANVTESKIQDIKIY 35 (88)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEEEEECCEEEEEEEE
T ss_conf 8867999999818989799998
No 2
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=62.04 E-value=5.1 Score=18.22 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.5
Q ss_pred CCCEEEEEEEEECCEEEEEEEE
Q ss_conf 8867899999758988888888
Q T0562 16 SGWKDTVTIEVKNGKIVSVDWN 37 (123)
Q Consensus 16 ~g~~~~v~vtvkdgkI~~v~~~ 37 (123)
.+|.+.+.+.|++|.|.+|.+-
T Consensus 14 ~~G~ve~~l~V~~G~I~~~~i~ 35 (91)
T d1x2ga1 14 TWGGVELHFDVEKGHITRAQVF 35 (91)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEEEEECCEEEEEEEE
T ss_conf 7716999999727989899998
No 3
>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=42.26 E-value=11 Score=16.48 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=27.0
Q ss_pred CCCCEEEEEEECCCCCC-CEEEEEEEEECCE-EEEEEEE
Q ss_conf 98846889862636888-6789999975898-8888888
Q T0562 1 MKDGTYYAEADDFDESG-WKDTVTIEVKNGK-IVSVDWN 37 (123)
Q Consensus 1 lkDGtY~~~~~~~d~~g-~~~~v~vtvkdgk-I~~v~~~ 37 (123)
|+.|.|....-.+++.| ....|+|.+.+|+ =..+++.
T Consensus 17 v~~g~~~i~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~ 55 (127)
T d1ogpa1 17 VKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRT 55 (127)
T ss_dssp ECSEEEEEEEEEECSTTCCEEEEEEESSTTSSCEECEEE
T ss_pred ECCCEEEEEEEEECCCCCEEEEEEEEECCCCCCEEEECC
T ss_conf 168659999999959994088999980899846785606
No 4
>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]} SCOP: d2ayia1
Probab=37.56 E-value=13 Score=16.06 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=16.0
Q ss_pred EEEEEEEEECCEEEEEEEEE
Q ss_conf 78999997589888888886
Q T0562 19 KDTVTIEVKNGKIVSVDWNA 38 (123)
Q Consensus 19 ~~~v~vtvkdgkI~~v~~~~ 38 (123)
.-.+.++|++|+|++++-..
T Consensus 278 ~~~i~l~f~~G~Vv~~~a~~ 297 (413)
T d1zjca1 278 IDQFKLMFKDGEIIDFSAEK 297 (413)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred ECCEEEEEECCEEEEEECCC
T ss_conf 44728999812799976686
No 5
>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]}
Probab=37.09 E-value=13 Score=16.00 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.1
Q ss_pred EEEEEEEECCEEEEEEEEE
Q ss_conf 8999997589888888886
Q T0562 20 DTVTIEVKNGKIVSVDWNA 38 (123)
Q Consensus 20 ~~v~vtvkdgkI~~v~~~~ 38 (123)
-.++++|++|+|++++-..
T Consensus 279 ~~i~l~f~~G~vv~~~~~~ 297 (413)
T d1zjca1 279 DQFKLMFKDGEIIDFSAEK 297 (413)
T ss_dssp EEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEECCEEEEEECCC
T ss_conf 4818999899999997476
No 6
>d1ua7a1 b.71.1.1 (A:348-425) Bacterial alpha-Amylase {Bacillus subtilis [TaxId: 1423]}
Probab=34.98 E-value=12 Score=16.24 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=14.3
Q ss_pred CCCCEEEEEEECCCCCCCEEEEEEEEECCEEEE
Q ss_conf 988468898626368886789999975898888
Q T0562 1 MKDGTYYAEADDFDESGWKDTVTIEVKNGKIVS 33 (123)
Q Consensus 1 lkDGtY~~~~~~~d~~g~~~~v~vtvkdgkI~~ 33 (123)
|.||+|.=... |. .+||++|+++.
T Consensus 42 Lp~GtYcDvis-----g~----~~tVs~G~~t~ 65 (78)
T d1ua7a1 42 LPDGRYDNKAG-----AG----SFQVNDGKLTG 65 (78)
T ss_dssp SCSEEEECTTS-----SC----EEEEETTEEEE
T ss_pred CCCCCEEEEEC-----CC----EEEEECCEEEE
T ss_conf 99954257731-----87----79981998999
No 7
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=34.19 E-value=16 Score=15.57 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.2
Q ss_pred CCCEEEEEEEEECCEEEEEEEEEECC
Q ss_conf 88678999997589888888886527
Q T0562 16 SGWKDTVTIEVKNGKIVSVDWNAINK 41 (123)
Q Consensus 16 ~g~~~~v~vtvkdgkI~~v~~~~~~~ 41 (123)
=|-.+.+.+.|++++|+++.|.....
T Consensus 35 CGD~i~i~l~i~~~~I~di~f~~~GC 60 (136)
T d1su0b_ 35 CGDVISLTVKFDEDKIEDIAFAGNGC 60 (136)
T ss_dssp SCCEEEEEEEESSSSEEEEEEEEECC
T ss_pred CCCEEEEEEEECCCEEEEEEEEECCC
T ss_conf 78879999997588146778775167
No 8
>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.56 E-value=20 Score=15.04 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=26.1
Q ss_pred CCCCEEEEEEECCCCCC-CEEEEEEEEECCE-EEEEEEE
Q ss_conf 98846889862636888-6789999975898-8888888
Q T0562 1 MKDGTYYAEADDFDESG-WKDTVTIEVKNGK-IVSVDWN 37 (123)
Q Consensus 1 lkDGtY~~~~~~~d~~g-~~~~v~vtvkdgk-I~~v~~~ 37 (123)
|..|.|....-.+++.| ....|+|.+.+|+ =..+++.
T Consensus 17 v~~g~~~v~G~A~sggg~~I~rVEVS~DgG~tW~~A~l~ 55 (123)
T d2a9da1 17 VPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLM 55 (123)
T ss_dssp ECSEEEEEEEEEECSTTCCEEEEEEESBSSSSCEECEEC
T ss_pred ECCCEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEC
T ss_conf 068719999999929994089999986999830794816
No 9
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=27.26 E-value=21 Score=14.91 Aligned_cols=36 Identities=6% Similarity=0.126 Sum_probs=25.2
Q ss_pred EEEEEEECCCCCCCEEEEEEEEECCEEEEEEEEEECC
Q ss_conf 6889862636888678999997589888888886527
Q T0562 5 TYYAEADDFDESGWKDTVTIEVKNGKIVSVDWNAINK 41 (123)
Q Consensus 5 tY~~~~~~~d~~g~~~~v~vtvkdgkI~~v~~~~~~~ 41 (123)
+..+..... .=|-.+++.+.|++++|.++.|.....
T Consensus 31 ~~~~~~~Np-~CGD~i~i~l~i~~~~I~d~~f~~~GC 66 (147)
T d1xjsa_ 31 SIVVDMNNP-TCGDRIRLTMKLDGDIVEDAKFEGEGC 66 (147)
T ss_dssp SEEEEEEET-TTTEEEEEEEECCSSBCCEEEEEEESS
T ss_pred CCEEECCCC-CCCCEEEEEEEECCCCEEEEEEEECCC
T ss_conf 877404799-987689999998588137877664245
No 10
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]} SCOP: d1h2rl_ d1e3db_ d2frvl_ d1frvb_ d1frfl_ d1cc1l_
Probab=23.55 E-value=25 Score=14.52 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.8
Q ss_pred CEEEEEEEEECCEEEEEEEEE
Q ss_conf 678999997589888888886
Q T0562 18 WKDTVTIEVKNGKIVSVDWNA 38 (123)
Q Consensus 18 ~~~~v~vtvkdgkI~~v~~~~ 38 (123)
+...+.|+++||+|+++.+..
T Consensus 17 G~l~l~l~id~g~V~~a~~~~ 37 (534)
T d1wuil1 17 GHLRIEVEVENGKVKNAYSSS 37 (534)
T ss_dssp SCEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
T ss_conf 017999998288899999887
No 11
>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]}
Probab=22.13 E-value=27 Score=14.36 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.2
Q ss_pred EEEEEEEECCEEEEEEEEE
Q ss_conf 8999997589888888886
Q T0562 20 DTVTIEVKNGKIVSVDWNA 38 (123)
Q Consensus 20 ~~v~vtvkdgkI~~v~~~~ 38 (123)
..++++|++|+|++++-..
T Consensus 276 ~~i~l~f~~G~vv~~~~~~ 294 (406)
T d2ayia1 276 EGIFARFERGFAVEVRAEK 294 (406)
T ss_dssp BSCEEEEETTEEEEEECSB
T ss_pred CCCEEEEECCEEEEEECCC
T ss_conf 4737999488799975576
No 12
>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]}
Probab=21.58 E-value=27 Score=14.29 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHCC
Q ss_conf 54346788889999886115
Q T0562 64 AQAEWHEQAEKVEAYLVEKQ 83 (123)
Q Consensus 64 ~~~~~~e~~~~l~~~li~~q 83 (123)
....|-|+++.+.++|.+..
T Consensus 110 ~~ISWdEAld~Ia~kl~~i~ 129 (728)
T d1vlfm2 110 ERISWDEATDIVVAEINRIK 129 (728)
T ss_dssp EECCHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHH
T ss_conf 98269999999999999999
No 13
>d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]}
Probab=20.04 E-value=30 Score=14.11 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.9
Q ss_pred CCCEEEEEEEEECCEEEEEEE
Q ss_conf 886789999975898888888
Q T0562 16 SGWKDTVTIEVKNGKIVSVDW 36 (123)
Q Consensus 16 ~g~~~~v~vtvkdgkI~~v~~ 36 (123)
+.+.++..|-|+||+|+.|--
T Consensus 78 ~~Gi~kadiGikdG~I~~iGk 98 (180)
T d1e9yb1 78 YTGIYKADIGIKDGKIAGIGK 98 (180)
T ss_dssp TTEEEEEEEEEETTEEEEEEC
T ss_pred CCCEEEEEEEEECCEEEEEEC
T ss_conf 388697432361798987424
Done!