Query T0564 SlR115, , 89 residues
Match_columns 89
No_of_seqs 91 out of 93
Neff 4.7
Searched_HMMs 22458
Date Tue Jun 1 15:07:11 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0564.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0564.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jys_A Protease/reverse transc 50.2 7.5 0.00033 18.4 2.4 33 34-68 56-90 (107)
2 1qqr_A Streptokinase domain B; 16.6 21 0.00092 16.1 -0.2 34 35-68 9-43 (138)
3 1bml_C Streptokinase; human pl 16.2 56 0.0025 13.9 4.0 39 4-50 125-163 (362)
4 1zp7_A Recombination protein U 15.9 44 0.002 14.4 1.3 15 73-88 93-107 (206)
5 3eo6_A Protein of unknown func 13.8 65 0.0029 13.5 2.2 23 1-23 2-24 (106)
6 3i1i_A Homoserine O-acetyltran 13.0 69 0.0031 13.4 1.9 32 41-73 16-48 (377)
7 2fco_A Recombination protein U 12.9 53 0.0024 14.0 1.1 27 59-87 78-104 (200)
8 3fsa_A Azurin; copper, cupredo 12.2 74 0.0033 13.2 3.9 33 36-74 91-125 (125)
9 2h12_A Citrate synthase; acido 10.6 50 0.0022 14.1 0.3 15 64-78 67-81 (436)
10 2vat_A Acetyl-COA--deacetylcep 10.4 85 0.0038 12.9 2.1 38 34-72 75-114 (444)
No 1
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=50.18 E-value=7.5 Score=18.43 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=24.3
Q ss_pred CCEEEEEEEEECCCCCEEEEEE--CHHHCCCCCCCCE
Q ss_conf 6548998888748996689991--6578176387877
Q T0564 34 TSMRYEASFKPLNGGLEKTFRL--QAQQYHALTVGDQ 68 (89)
Q Consensus 34 ~~~~Y~vtF~p~~~G~~~ef~v--~~~~Y~~l~~Gd~ 68 (89)
+..-||++|. +. |-+++-.| +.-+|-.|+++|-
T Consensus 56 ~q~vYYltfK-i~-gRkv~aEVi~s~~dYill~P~Di 90 (107)
T 2jys_A 56 QQDVYYLTFK-VQ-GRKVEAEVLASPYDYILLNPSDV 90 (107)
T ss_dssp EEEEEEEEEE-ES-SCEEEEEEEEESSSSEEECTTTC
T ss_pred CCCEEEEEEE-EC-CEEEEEEEECCCCEEEEECCCCC
T ss_conf 0527999999-86-64988899516320799867576
No 2
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=16.58 E-value=21 Score=16.13 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=19.5
Q ss_pred CEEEEEEEEECCCCCEEEEE-ECHHHCCCCCCCCE
Q ss_conf 54899888874899668999-16578176387877
Q T0564 35 SMRYEASFKPLNGGLEKTFR-LQAQQYHALTVGDQ 68 (89)
Q Consensus 35 ~~~Y~vtF~p~~~G~~~ef~-v~~~~Y~~l~~Gd~ 68 (89)
+..|.|.|.++++|..-.-. .....++.+..||.
T Consensus 9 ~V~y~V~F~~~~~d~~~~~~l~~~~~l~~~~iGd~ 43 (138)
T 1qqr_A 9 DVEYTVQFTPLNPDDDFRPGLKLTKLLKTLAIGDT 43 (138)
T ss_dssp EEEEEEEEEESSCCTTSCTTBCCCEEEEEECTTCE
T ss_pred EEEEEEEEEECCCCCCCCCEEECCHHHCCCCCCCC
T ss_conf 77889998853899888740314012221235763
No 3
>1bml_C Streptokinase; human plasmin, blood clotting; 2.90A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 d.15.5.1 d.15.5.1
Probab=16.20 E-value=56 Score=13.86 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=22.7
Q ss_pred CEEEEEEEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
Q ss_conf 21356898634212247743222564358765489988887489966
Q T0564 4 LQQKQVVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLE 50 (89)
Q Consensus 4 ~~sv~v~Vv~KR~~~~~~~rsrq~~~~~~~~~~~Y~vtF~p~~~G~~ 50 (89)
+++..|.|---.+.|..| +. -.-+.+|+|.|.+.++|+.
T Consensus 125 LL~GhViv~p~~ekpi~~--~a------e~V~V~y~VqFv~~~~d~d 163 (362)
T 1bml_C 125 LLSGHVRVRPYKEKPIQN--QA------KSVDVEYTVQFTPLNPDDD 163 (362)
T ss_dssp EEEEEEEEEECCCCCCSS--BC------CCEEEEEEEEEEESSSSCC
T ss_pred EEECCEEEEECCCCCCCC--CC------CEEEEEEEEEEEECCCCCC
T ss_conf 983308988679877258--88------5367899999986489988
No 4
>1zp7_A Recombination protein U; recombination,DNA-binding protein,resolvase, DNA binding protein; 2.25A {Bacillus subtilis} PDB: 1rzn_A
Probab=15.85 E-value=44 Score=14.40 Aligned_cols=15 Identities=40% Similarity=0.973 Sum_probs=10.1
Q ss_pred ECCEEEEEECCCCCCC
Q ss_conf 5313787540378788
Q T0564 73 YKGTRFVGFVSRTPDN 88 (89)
Q Consensus 73 ~QGtrfi~Fe~~~~~~ 88 (89)
||| |||.||...-.|
T Consensus 93 ykG-~~I~FEAKeT~n 107 (206)
T 1zp7_A 93 YKG-RYIDFEAKETKN 107 (206)
T ss_dssp ETT-EEEEEEEEECCC
T ss_pred ECC-EEEEEECCCCCC
T ss_conf 778-999997433357
No 5
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=13.79 E-value=65 Score=13.50 Aligned_cols=23 Identities=35% Similarity=0.292 Sum_probs=19.9
Q ss_pred CCCCEEEEEEEECCCCEECCCCC
Q ss_conf 98721356898634212247743
Q T0564 1 MAPLQQKQVVVSNKREKPVNDRR 23 (89)
Q Consensus 1 ~aP~~sv~v~Vv~KR~~~~~~~r 23 (89)
|+|.++.+..-+.|+.+++=+-+
T Consensus 2 m~~~~q~~~vsv~k~ANvYFDGk 24 (106)
T 3eo6_A 2 MAPDQQVPATALGKSSRISLDGR 24 (106)
T ss_dssp CCGGGEEEEEEEESCCEEETTTT
T ss_pred CCHHHCCCCEEEEEEEEEEECCE
T ss_conf 88688137507867877999985
No 6
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, center for structural genomics of infectious diseases, csgid; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=13.00 E-value=69 Score=13.37 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.2
Q ss_pred EEEECCCCCEEEEEECHHHCCCCCC-CCEEEEEE
Q ss_conf 8887489966899916578176387-87789985
Q T0564 41 SFKPLNGGLEKTFRLQAQQYHALTV-GDQGTLSY 73 (89)
Q Consensus 41 tF~p~~~G~~~ef~v~~~~Y~~l~~-Gd~G~L~~ 73 (89)
.|+ +++|..+.++|..+.||.|+. +|--+|-.
T Consensus 16 ~f~-le~G~~l~~~laY~t~G~ln~~~~N~vlv~ 48 (377)
T 3i1i_A 16 EYT-FENGRTIPVQMGYETYGTLNRERSNVILIC 48 (377)
T ss_dssp EEE-CTTSCEEEEEEEEEEESCCCTTCCCEEEEE
T ss_pred CEE-ECCCCEEEEEEEEEEECCCCCCCCCEEEEE
T ss_conf 857-068988304799996235488899789981
No 7
>2fco_A Recombination protein U (penicillin-binding protein related factor A); flexibility, hydrolase; 1.40A {Geobacillus kaustophilus HTA426} PDB: 1y1o_A
Probab=12.90 E-value=53 Score=13.99 Aligned_cols=27 Identities=15% Similarity=0.517 Sum_probs=13.9
Q ss_pred HCCCCCCCCEEEEEECCEEEEEECCCCCC
Q ss_conf 81763878778998531378754037878
Q T0564 59 QYHALTVGDQGTLSYKGTRFVGFVSRTPD 87 (89)
Q Consensus 59 ~Y~~l~~Gd~G~L~~QGtrfi~Fe~~~~~ 87 (89)
.|..=..=|--- .||| |||.||...-.
T Consensus 78 yf~~kSt~DY~G-vykG-~~I~FEAKeT~ 104 (200)
T 2fco_A 78 YFRQASTTDYNG-VYRG-KYIDFEAKETK 104 (200)
T ss_dssp CCCCCSSCSEEE-EETT-EEEEEEEEEES
T ss_pred EECCCCCCCCEE-EECC-EEEEEECCCCC
T ss_conf 965678787103-7778-99999854335
No 8
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ...
Probab=12.18 E-value=74 Score=13.23 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEEEE-E-CCCCCEEEEEECHHHCCCCCCCCEEEEEEC
Q ss_conf 48998888-7-489966899916578176387877899853
Q T0564 36 MRYEASFK-P-LNGGLEKTFRLQAQQYHALTVGDQGTLSYK 74 (89)
Q Consensus 36 ~~Y~vtF~-p-~~~G~~~ef~v~~~~Y~~l~~Gd~G~L~~Q 74 (89)
..+.++|. | ++......|.-+++ .|++|+|+.+
T Consensus 91 es~sitFt~p~~~~~G~Y~f~C~gH------agM~G~l~Vk 125 (125)
T 3fsa_A 91 EKDSVTFDVSKLKEGEQYMFFCAAH------AAMKGTLTLK 125 (125)
T ss_dssp CEEEEEEEGGGC---CCEEEECSSS------TTCEEEEEEC
T ss_pred CEEEEEEECCCCCCCCCEEEECCCC------CCCEEEEEEC
T ss_conf 5589999541457896199969897------6846999989
No 9
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=10.60 E-value=50 Score=14.14 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.4
Q ss_pred CCCCEEEEEECCEEE
Q ss_conf 878778998531378
Q T0564 64 TVGDQGTLSYKGTRF 78 (89)
Q Consensus 64 ~~Gd~G~L~~QGtrf 78 (89)
.-|++|.|.|.|--.
T Consensus 67 IDG~~G~L~YRGy~I 81 (436)
T 2h12_A 67 IDGDKGVLLHRGYPI 81 (436)
T ss_dssp EETTTTEEEETTEEH
T ss_pred EECCCCEEEECCEEH
T ss_conf 737863799998559
No 10
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Probab=10.36 E-value=85 Score=12.89 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=26.9
Q ss_pred CCEEEEEEEEECCCCCEE-EEEECHHHCCCCCCC-CEEEEE
Q ss_conf 654899888874899668-999165781763878-778998
Q T0564 34 TSMRYEASFKPLNGGLEK-TFRLQAQQYHALTVG-DQGTLS 72 (89)
Q Consensus 34 ~~~~Y~vtF~p~~~G~~~-ef~v~~~~Y~~l~~G-d~G~L~ 72 (89)
.++.==-.|+ +++|..+ +++|....||.|++. |-=+|-
T Consensus 75 ~~~~~i~~F~-lesG~~L~~~~laY~T~G~LN~~k~NaILv 114 (444)
T 2vat_A 75 QDIARISLFT-LESGVILRDVPVAYKSWGRMNVSRDNCVIV 114 (444)
T ss_dssp CEEEEEEEEE-CTTSCEEEEEEEEEEEESCCCTTSCCEEEE
T ss_pred CCEEECCCEE-CCCCCCCCCCEEEEEEECCCCCCCCCEEEE
T ss_conf 4446328678-489988489569999614548889988998
Done!