Query T0564 SlR115, , 89 residues
Match_columns 89
No_of_seqs 91 out of 93
Neff 4.7
Searched_HMMs 15564
Date Tue Jun 1 15:07:58 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0564.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0564.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x68a1 g.39.1.3 (A:8-36) Four 38.0 5.1 0.00033 18.5 0.8 13 73-85 11-23 (29)
2 d1x4la1 g.39.1.3 (A:8-36) Four 24.7 8.6 0.00055 17.3 0.1 14 73-86 11-24 (29)
3 d1rzna_ c.52.1.28 (A:) Recombi 17.3 27 0.0017 14.7 1.3 14 73-87 60-73 (165)
4 d1qqra_ d.15.5.1 (A:) Streptok 17.1 16 0.001 15.9 0.1 34 35-68 9-43 (138)
5 d2vata1 c.69.1.40 (A:7-382) Ac 15.1 42 0.0027 13.7 1.9 32 40-72 16-49 (376)
6 d1y1oa_ c.52.1.28 (A:) Recombi 11.8 41 0.0026 13.7 1.0 13 73-86 61-73 (168)
7 d2qqra1 b.34.9.1 (A:897-955) J 9.4 65 0.0042 12.7 1.5 31 9-43 7-37 (59)
8 d3pmga4 d.129.2.1 (A:421-561) 8.8 69 0.0044 12.6 2.3 14 45-58 73-86 (141)
9 d1kfia4 d.129.2.1 (A:444-572) 8.5 70 0.0045 12.5 2.7 14 45-58 63-76 (129)
10 d1ko6.1 b.119.1.1 (A:,B:) C-te 7.9 74 0.0048 12.4 1.1 13 73-85 130-142 (159)
No 1
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.01 E-value=5.1 Score=18.49 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=9.7
Q ss_pred ECCEEEEEECCCC
Q ss_conf 5313787540378
Q T0564 73 YKGTRFVGFVSRT 85 (89)
Q Consensus 73 ~QGtrfi~Fe~~~ 85 (89)
+-|++||+||-..
T Consensus 11 ~gG~k~isFedR~ 23 (29)
T d1x68a1 11 LTGAKFICFQDSQ 23 (29)
T ss_dssp TTTCCEEEETTEE
T ss_pred CCCCEEEEEEHHH
T ss_conf 5771588750200
No 2
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.75 E-value=8.6 Score=17.29 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=10.3
Q ss_pred ECCEEEEEECCCCC
Q ss_conf 53137875403787
Q T0564 73 YKGTRFVGFVSRTP 86 (89)
Q Consensus 73 ~QGtrfi~Fe~~~~ 86 (89)
+-|++||+||-..-
T Consensus 11 ~gg~kyisFE~R~W 24 (29)
T d1x4la1 11 LGGTKYISFEERQW 24 (29)
T ss_dssp SSSCSCEECSSCEE
T ss_pred CCCCEEEEEECCCC
T ss_conf 57725887501002
No 3
>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
Probab=17.32 E-value=27 Score=14.70 Aligned_cols=14 Identities=36% Similarity=0.952 Sum_probs=9.8
Q ss_pred ECCEEEEEECCCCCC
Q ss_conf 531378754037878
Q T0564 73 YKGTRFVGFVSRTPD 87 (89)
Q Consensus 73 ~QGtrfi~Fe~~~~~ 87 (89)
||| |||.||.+.-.
T Consensus 60 ykG-~~I~FEAKeT~ 73 (165)
T d1rzna_ 60 YKG-RYIDFEAKETK 73 (165)
T ss_dssp ETT-EEEEEEEEECC
T ss_pred ECC-EEEEEECCCCC
T ss_conf 778-99999833546
No 4
>d1qqra_ d.15.5.1 (A:) Streptokinase {Streptococcus equisimilis [TaxId: 119602]}
Probab=17.12 E-value=16 Score=15.89 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=20.4
Q ss_pred CEEEEEEEEECCCCCEEE-EEECHHHCCCCCCCCE
Q ss_conf 548998888748996689-9916578176387877
Q T0564 35 SMRYEASFKPLNGGLEKT-FRLQAQQYHALTVGDQ 68 (89)
Q Consensus 35 ~~~Y~vtF~p~~~G~~~e-f~v~~~~Y~~l~~Gd~ 68 (89)
+.+|.|.|-++++++.-. .-+....++.+..||.
T Consensus 9 ~v~y~V~F~~~~~d~d~~~~~~~~~~l~~~~iGd~ 43 (138)
T d1qqra_ 9 DVEYTVQFTPLNPDDDFRPGLKLTKLLKTLAIGDT 43 (138)
T ss_dssp EEEEEEEEEESSCCTTSCTTBCCCEEEEEECTTCE
T ss_pred EEEEEEEEEECCCCCCCCCCEECHHHHCCCCCCCC
T ss_conf 56889998624899888741102344332344764
No 5
>d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]}
Probab=15.10 E-value=42 Score=13.70 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=24.6
Q ss_pred EEEEECCCCCEE-EEEECHHHCCCCCCC-CEEEEE
Q ss_conf 888874899668-999165781763878-778998
Q T0564 40 ASFKPLNGGLEK-TFRLQAQQYHALTVG-DQGTLS 72 (89)
Q Consensus 40 vtF~p~~~G~~~-ef~v~~~~Y~~l~~G-d~G~L~ 72 (89)
-.|+ +++|..+ .++|..+.||.|+.. |-=+|-
T Consensus 16 ~~F~-le~G~~l~~~~laY~t~G~ln~~~~NaVlv 49 (376)
T d2vata1 16 SLFT-LESGVILRDVPVAYKSWGRMNVSRDNCVIV 49 (376)
T ss_dssp EEEE-CTTSCEEEEEEEEEEEESCCCTTSCCEEEE
T ss_pred CCEE-ECCCCCCCCCEEEEEEECCCCCCCCCEEEE
T ss_conf 7678-279988589569999625648889988998
No 6
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.82 E-value=41 Score=13.73 Aligned_cols=13 Identities=23% Similarity=0.948 Sum_probs=8.9
Q ss_pred ECCEEEEEECCCCC
Q ss_conf 53137875403787
Q T0564 73 YKGTRFVGFVSRTP 86 (89)
Q Consensus 73 ~QGtrfi~Fe~~~~ 86 (89)
||| |||.||...-
T Consensus 61 y~G-~~I~FEAKeT 73 (168)
T d1y1oa_ 61 YRG-KYIDFEAKET 73 (168)
T ss_dssp ETT-EEEEEEEEEE
T ss_pred ECC-EEEEEEEEEC
T ss_conf 556-5899996303
No 7
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.38 E-value=65 Score=12.69 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 89863421224774322256435876548998888
Q T0564 9 VVVSNKREKPVNDRRSRQQEVSPAGTSMRYEASFK 43 (89)
Q Consensus 9 v~Vv~KR~~~~~~~rsrq~~~~~~~~~~~Y~vtF~ 43 (89)
-+|+.|-. |-|-.+-.+...++.+-|+|.|.
T Consensus 7 q~VI~Khk----NgryY~c~V~~~~~qtfyeV~Fd 37 (59)
T d2qqra1 7 QKVISKHK----NGRFYQCEVVRLTTETFYEVNFD 37 (59)
T ss_dssp CEEEEECT----TSSEEEEEEEEEEEEEEEEEEET
T ss_pred CEEEEECC----CCCEEEEEEEEEEEEEEEEEEEC
T ss_conf 49999836----88698779987631799999915
No 8
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=8.77 E-value=69 Score=12.56 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=11.5
Q ss_pred CCCCCEEEEEECHH
Q ss_conf 48996689991657
Q T0564 45 LNGGLEKTFRLQAQ 58 (89)
Q Consensus 45 ~~~G~~~ef~v~~~ 58 (89)
+++|+|+-|+|++.
T Consensus 73 F~dGsRiVfRLSGT 86 (141)
T d3pmga4 73 FADGSRIIFRLSGT 86 (141)
T ss_dssp ETTSCEEEEEEEEC
T ss_pred ECCCCEEEEEECCC
T ss_conf 72897899994578
No 9
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Probab=8.52 E-value=70 Score=12.50 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.6
Q ss_pred CCCCCEEEEEECHH
Q ss_conf 48996689991657
Q T0564 45 LNGGLEKTFRLQAQ 58 (89)
Q Consensus 45 ~~~G~~~ef~v~~~ 58 (89)
+++|+++-|+|++.
T Consensus 63 F~dGsRiVfRLSGT 76 (129)
T d1kfia4 63 FGDGSRIIFRLSGT 76 (129)
T ss_dssp CTTSCEEEEEECSS
T ss_pred ECCCCEEEEEECCC
T ss_conf 72897899994588
No 10
>d1ko6.1 b.119.1.1 (A:,B:) C-terminal autoproteolytic domain of nucleoporin nup98 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1ko6.2
Probab=7.89 E-value=74 Score=12.37 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=9.2
Q ss_pred ECCEEEEEECCCC
Q ss_conf 5313787540378
Q T0564 73 YKGTRFVGFVSRT 85 (89)
Q Consensus 73 ~QGtrfi~Fe~~~ 85 (89)
-+|++|++|.+..
T Consensus 130 ~~~~~FvsYd~~t 142 (159)
T d1ko6.1 130 KQGAQFKEYRPET 142 (159)
T ss_dssp HTTCEEEEEEGGG
T ss_pred HCCCEEEEEECCC
T ss_conf 1498587876587
Done!