Query T0566 pfc0270w, Plasmodium Falciparum, 156 residues
Match_columns 156
No_of_seqs 104 out of 232
Neff 6.4
Searched_HMMs 22458
Date Tue Jun 1 15:07:05 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0566.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0566.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1usu_B AHA1; chaperone/complex 100.0 0 0 291.5 11.0 145 4-150 19-169 (170)
2 2jvw_A Uncharacterized protein 29.4 19 0.00084 15.7 1.7 34 107-143 41-74 (88)
3 3jrt_A Integron cassette prote 14.3 45 0.002 13.6 1.0 27 1-29 12-38 (192)
4 2oyn_A Hypothetical protein MJ 13.6 58 0.0026 12.9 5.9 74 15-95 26-104 (146)
5 1z7l_A Ubiquitin-activating en 10.7 58 0.0026 12.9 0.7 14 14-27 29-42 (276)
6 3c6v_A Probable tautomerase/de 8.4 61 0.0027 12.8 0.1 29 1-29 12-49 (161)
7 1y43_A Aspergillopepsin II lig 7.9 94 0.0042 11.7 3.7 28 68-95 5-33 (39)
8 2qis_A Farnesyl pyrophosphate 7.6 80 0.0036 12.1 0.4 18 1-18 11-28 (374)
9 2fue_A PMM 1, PMMH-22, phospho 7.0 1E+02 0.0046 11.5 0.8 14 52-65 8-21 (262)
10 1uf0_A Serine/threonine-protei 6.6 1.1E+02 0.0049 11.3 0.8 16 47-62 1-16 (116)
No 1
>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
Probab=100.00 E-value=0 Score=291.52 Aligned_cols=145 Identities=22% Similarity=0.353 Sum_probs=129.4
Q ss_pred C-CCCCHHHCCCCHHHHHHHHHHHCCCEEEC--CCCEEEEEEE-EEEEEEEEEEECCEEEEEEEEEEEEEEEEEEECCC-
Q ss_conf 8-87521102789769999999754651336--9837999998-86423578754680688888899999999971699-
Q T0566 4 E-NLYFQGERNYNKWAESYIKYNLSNLKIEK--EDLTIYFDNL-QVSGNACVSIRKGKQINSFEYIIKFEWLYSKKKEG- 78 (156)
Q Consensus 4 ~-N~wHW~EKn~t~Wsk~~lkelL~~~~ve~--~~~~~~v~~v-~v~GdA~V~~RKGK~i~~ydl~i~l~w~g~~~~~~- 78 (156)
| |||||+|||||+|||+||+++|.++.++. +++.++|+.| +|+|||+|++||||+||+|||+|+|+|+|++++.+
T Consensus 19 NvNNWHWeEKn~t~Wak~~LkelL~~l~~~~~~~~~~~~i~~V~~v~GeAsV~~RKGK~i~~ye~~i~l~w~g~~~~~d~ 98 (170)
T 1usu_B 19 NPNNWHWVDKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLKITVLIEGHVDSKDG 98 (170)
T ss_dssp -------CCEETHHHHHHHHHHHHTTCBC-----CCEEEECCCCEEEEECEECCC-CCCCCCCEEEEEEEEEEECCC---
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEECCCCC
T ss_conf 68077278689988999999988516830257887579999823666789999857928998999999999999867788
Q ss_pred -CCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -827888986243337888876358999851788426889999987421799999999889999861787020
Q T0566 79 -KDYFGGSVEIPDFSTFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLKHDKNESN 150 (156)
Q Consensus 79 -~~~~~G~i~IPels~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e~~~~~~~ 150 (156)
+..++|+|+|||||++| ++|||+|.++.+++++...+++ +++++.++|+||++|.+|+++|++.++.+-|
T Consensus 99 ~~~~~~G~i~iPels~d~-~~dd~ei~v~~~~~~~~~~~~k-~~i~k~~~~~lr~~l~~f~~~L~~~~s~d~q 169 (170)
T 1usu_B 99 SALPFEGSINVPEVAFDS-EASSYQFDISIFKETSELSEAK-PLIRSELLPKLRQIFQQFGKDLLATHGNDIQ 169 (170)
T ss_dssp -CCEEEEEEEEEEEETTC-CGGGCCCEEEETTCCTTSTTHH-HHHHHHTHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCEEEEEEECCCCCCCC-CCCCEEEEEEECCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 762677789787115677-8865699999868984078999-9999985999999999999999987532354
No 2
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural genomics, unknown function, PSI-2; NMR {Vibrio fischeri ES114}
Probab=29.35 E-value=19 Score=15.68 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=14.1
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5178842688999998742179999999988999986
Q T0566 107 RTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLK 143 (156)
Q Consensus 107 ~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e 143 (156)
.+...++...-.+ ++|+ .|=-|+++..|--.+++
T Consensus 41 CF~~~PSikSSLk-FLRK--TpWAR~KVE~lYl~~~r 74 (88)
T 2jvw_A 41 CFKKDPSIKSSLK-FLRK--TDWARERVENIYLKLQR 74 (88)
T ss_dssp STTSSCCHHHHHH-HHHH--SHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHH-HHHC--CHHHHHHHHHHHHHHHH
T ss_conf 3799997388999-9806--98899999999999984
No 3
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural genomics, PSI-2 protein structure initiative; 2.30A {Vibrio paracholerae}
Probab=14.32 E-value=45 Score=13.56 Aligned_cols=27 Identities=59% Similarity=0.890 Sum_probs=16.5
Q ss_pred CCCCCCCCHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 98888752110278976999999975465
Q T0566 1 SGRENLYFQGERNYNKWAESYIKYNLSNL 29 (156)
Q Consensus 1 ~~~~N~wHW~EKn~t~Wsk~~lkelL~~~ 29 (156)
|||+|-|...-|-...|- .+.++|.|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~--e~~eIL~GL 38 (192)
T 3jrt_A 12 SGRENLYFQGVKMSDKWI--EIEEILSGL 38 (192)
T ss_dssp ---------CCCCCCHHH--HHHHHHHHH
T ss_pred CCCCCEEEECCCCCHHHH--HHHHHHHHH
T ss_conf 664311453300214799--999999986
No 4
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=13.63 E-value=58 Score=12.90 Aligned_cols=74 Identities=15% Similarity=0.015 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEEEEEEEECCEEEEEEEEE-----EEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 976999999975465133698379999988642357875468068888889-----999999997169982788898624
Q T0566 15 NKWAESYIKYNLSNLKIEKEDLTIYFDNLQVSGNACVSIRKGKQINSFEYI-----IKFEWLYSKKKEGKDYFGGSVEIP 89 (156)
Q Consensus 15 t~Wsk~~lkelL~~~~ve~~~~~~~v~~v~v~GdA~V~~RKGK~i~~ydl~-----i~l~w~g~~~~~~~~~~~G~i~IP 89 (156)
.+|=++.|+++|.-.+.++ ...+.+. .+..++..++-.|-+|... =...|.+++..++ ..+.|.|-+|
T Consensus 26 l~~Y~~qF~~~LG~~PyPG-TLNi~l~-----~~~~l~~~~~i~i~gf~~~gr~fggv~~~~~~i~~~~-~~i~~aii~P 98 (146)
T 2oyn_A 26 LPPYKEIFKKILGFEPYEG-TLNLKLD-----REFDINKFKYIETEDFEFNGKRFFGVKVLPIKILIGN-KKIDGAIVVP 98 (146)
T ss_dssp SHHHHHHHHHHHSSCCCSS-CEEEEEE-----EEECGGGSCCEECCCEEETTEEECCEEEEEEEEEETT-EEEEEEEEEE
T ss_pred CHHHHHHHHHHHCCCCCCC-CEEEEEC-----CCCCCCCCCCEEECCCCCCCCEEECEEEEEEEEECCC-CCEEEEEEEE
T ss_conf 8899999999859977898-4889847-----7033001456261794269945816899999998189-9488999985
Q ss_pred CCCCCC
Q ss_conf 333788
Q T0566 90 DFSTFS 95 (156)
Q Consensus 90 els~en 95 (156)
+.++..
T Consensus 99 ~rT~H~ 104 (146)
T 2oyn_A 99 KKTYHS 104 (146)
T ss_dssp SSCSSC
T ss_pred CCCCCC
T ss_conf 777899
No 5
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=10.66 E-value=58 Score=12.92 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 89769999999754
Q T0566 14 YNKWAESYIKYNLS 27 (156)
Q Consensus 14 ~t~Wsk~~lkelL~ 27 (156)
|..|||+.|..+|.
T Consensus 29 CI~WAk~lF~~lF~ 42 (276)
T 1z7l_A 29 TLQWARDEFEGLFK 42 (276)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999875
No 6
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=8.39 E-value=61 Score=12.80 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=20.0
Q ss_pred CCCCCCCC---------HHHCCCCHHHHHHHHHHHCCC
Q ss_conf 98888752---------110278976999999975465
Q T0566 1 SGRENLYF---------QGERNYNKWAESYIKYNLSNL 29 (156)
Q Consensus 1 ~~~~N~wH---------W~EKn~t~Wsk~~lkelL~~~ 29 (156)
|||||-|. ..+-.+|+=.|..|-+.++.+
T Consensus 12 ~~~~~~~~~~MP~~~I~~~~g~lt~eqK~~La~~IT~~ 49 (161)
T 3c6v_A 12 SGRENLYFQGMPRWLIQHSPNTLTPEEKSHLAQQITQA 49 (161)
T ss_dssp -------CCSCCEEEEEECTTSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 65334210599849999579988999999999999999
No 7
>1y43_A Aspergillopepsin II light chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=7.88 E-value=94 Score=11.71 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=20.1
Q ss_pred EEEEEEEECCCC-CEEEEEEEECCCCCCC
Q ss_conf 999999716998-2788898624333788
Q T0566 68 FEWLYSKKKEGK-DYFGGSVEIPDFSTFS 95 (156)
Q Consensus 68 l~w~g~~~~~~~-~~~~G~i~IPels~en 95 (156)
-+|.|-+..+.+ ..+.|.++||..+--+
T Consensus 5 snWAGAVliGtGytsVtgeftvPtp~~p~ 33 (39)
T 1y43_A 5 SNWAGAVLIGDGYTKVTGEFTVPSVSAGS 33 (39)
T ss_dssp SSEEEEEEECSCEEEEEEEEECCCCBCC-
T ss_pred CCCCEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 56301589805742677878745777898
No 8
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 2f94_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F*
Probab=7.63 E-value=80 Score=12.10 Aligned_cols=18 Identities=61% Similarity=0.901 Sum_probs=14.6
Q ss_pred CCCCCCCCHHHCCCCHHH
Q ss_conf 988887521102789769
Q T0566 1 SGRENLYFQGERNYNKWA 18 (156)
Q Consensus 1 ~~~~N~wHW~EKn~t~Ws 18 (156)
|||+|-|+-++.|.++-.
T Consensus 11 ~~~~~l~~~~~~~~~~~~ 28 (374)
T 2qis_A 11 SGRENLYFQGHMNGDQNS 28 (374)
T ss_dssp ------------------
T ss_pred CCCCCEEECCCCCCCCCC
T ss_conf 675111000225887533
No 9
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosylation; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*
Probab=7.01 E-value=1e+02 Score=11.47 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=7.1
Q ss_pred EEECCEEEEEEEEE
Q ss_conf 75468068888889
Q T0566 52 SIRKGKQINSFEYI 65 (156)
Q Consensus 52 ~~RKGK~i~~ydl~ 65 (156)
+.||-|++++||++
T Consensus 8 ~~~~~k~L~~fDlD 21 (262)
T 2fue_A 8 ARRKERVLCLFDVD 21 (262)
T ss_dssp -----CEEEEEESB
T ss_pred HHCCCCEEEEECCC
T ss_conf 73069989999054
No 10
>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics, ubiquitin-like fold, microtubule- binding; NMR {Homo sapiens} SCOP: d.15.11.1
Probab=6.59 E-value=1.1e+02 Score=11.34 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=8.3
Q ss_pred EEEEEEEECCEEEEEE
Q ss_conf 2357875468068888
Q T0566 47 GNACVSIRKGKQINSF 62 (156)
Q Consensus 47 GdA~V~~RKGK~i~~y 62 (156)
|++-...||-|.|++|
T Consensus 1 ~~s~~~~~kak~I~~~ 16 (116)
T 1uf0_A 1 GSSGSSGKKAKKVRFY 16 (116)
T ss_dssp CCSCCCCCSCEEEEEE
T ss_pred CCCCCCCCCCEEEEEE
T ss_conf 9888877787389998
Done!