Query T0566 pfc0270w, Plasmodium Falciparum, 156 residues
Match_columns 156
No_of_seqs 104 out of 232
Neff 6.4
Searched_HMMs 11830
Date Tue Jun 1 15:09:20 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0566.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0566.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09229 Aha1_N: Activator of 100.0 5E-40 4.2E-44 244.5 12.0 134 11-146 1-136 (137)
2 PF09905 DUF2132: Uncharacteri 29.6 9.8 0.00083 15.7 1.7 11 15-25 52-62 (64)
3 PF10287 DUF2401: Putative sec 25.0 15 0.0012 14.7 1.9 43 26-68 59-111 (234)
4 PF09862 DUF2089: Protein of u 16.1 14 0.0012 14.9 0.2 61 79-143 19-79 (113)
5 PF09070 PFU: PFU (PLAA family 13.2 32 0.0027 12.8 3.5 91 46-142 7-110 (116)
6 PF10585 UBA_e1_thiolCys: Ubiq 9.6 35 0.0029 12.6 0.6 13 14-26 32-44 (45)
7 PF10608 MAGUK_N_PEST: Polyubi 8.8 29 0.0025 13.0 0.0 13 6-18 29-41 (89)
8 PF01567 Hanta_G1: Hantavirus 8.5 46 0.0039 11.9 1.3 12 82-93 182-193 (542)
9 PF06185 YecM: YecM protein; 6.5 58 0.0049 11.3 3.9 21 50-70 63-83 (185)
10 PF10707 YrbL-PhoP_reg: PhoP r 6.4 59 0.005 11.3 5.0 45 101-145 94-138 (199)
No 1
>PF09229 Aha1_N: Activator of Hsp90 ATPase, N-terminal; InterPro: IPR015310 This domain is predominantly found in the protein 'Activator of Hsp90 ATPase', it adopts a secondary structure consisting of an N-terminal alpha-helix leading into a four-stranded meandering antiparallel beta-sheet, followed by a C-terminal alpha-helix. The two helices are packed together, with the beta-sheet curving around them. They bind to the molecular chaperone HSP82 and stimulate its ATPase activity . ; GO: 0001671 ATPase activator activity, 0030189 chaperone activator activity, 0051087 chaperone binding, 0005737 cytoplasm; PDB: 1usv_F 1usu_B.
Probab=100.00 E-value=5e-40 Score=244.49 Aligned_cols=134 Identities=34% Similarity=0.572 Sum_probs=123.7
Q ss_pred HCCCCHHHHHHHHHHHCCCEE-ECCCCEEEEEEE-EEEEEEEEEEECCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 027897699999997546513-369837999998-864235787546806888888999999999716998278889862
Q T0566 11 ERNYNKWAESYIKYNLSNLKI-EKEDLTIYFDNL-QVSGNACVSIRKGKQINSFEYIIKFEWLYSKKKEGKDYFGGSVEI 88 (156)
Q Consensus 11 EKn~t~Wsk~~lkelL~~~~v-e~~~~~~~v~~v-~v~GdA~V~~RKGK~i~~ydl~i~l~w~g~~~~~~~~~~~G~i~I 88 (156)
|||||+|||+||+++|.++++ +++++.+.|+.| +|+|||+|++||||+||+|||+|+|+|+|+..++++..++|+|+|
T Consensus 1 EKn~t~Wak~~l~e~L~~~~~~~~~~~~~~v~~V~~v~GdA~v~~RKGK~i~~fd~~i~l~w~g~~~~~~~~~~~G~i~I 80 (137)
T PF09229_consen 1 EKNCTPWAKERLKELLEGLKVSEDEDGSVKVTEVSSVEGDASVNQRKGKKICIFDLSITLKWEGELKDGDEKKVKGSIEI 80 (137)
T ss_dssp EEE----HHHHHHHHH---E---SSSS-EEEEEEEEEE---EEEE----EEE--EEEEEEEEE--BES---B--E-EEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEECCCCCCEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEE
T ss_conf 99877899999998842577656898589999924765279999866918999999999999999648998489999991
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4333788887635899985178842688999998742179999999988999986178
Q T0566 89 PDFSTFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLKHDK 146 (156)
Q Consensus 89 Pels~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e~~~ 146 (156)
||||++| +++||+|.++..+.++..+++ .++|++.++|.||++|.+|+++|+++++
T Consensus 81 pe~s~~~-~~~d~~~~v~~~~~~~~~~~~-~~~i~~~~~~~l~~~l~~f~~~L~~~~s 136 (137)
T PF09229_consen 81 PELSSDN-DEDDYEIEVSVKDESPESDRL-KDLIKKKGVPKLREKLRQFVKELKEEHS 136 (137)
T ss_dssp EEEETT---TTT---EEEETT--TTTTTH-HHHHHHHTHHHHHHHHHH---TTTTT--
T ss_pred CCCCCCC-CCCCEEEEEEECCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1037887-765517999986898327899-9999998799999999999999988745
No 2
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); PDB: 2jvw_A.
Probab=29.61 E-value=9.8 Score=15.71 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=4.8
Q ss_pred CHHHHHHHHHH
Q ss_conf 97699999997
Q T0566 15 NKWAESYIKYN 25 (156)
Q Consensus 15 t~Wsk~~lkel 25 (156)
|||||++.+.+
T Consensus 52 TpWAR~KVE~l 62 (64)
T PF09905_consen 52 TPWAREKVENL 62 (64)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 88699999986
No 3
>PF10287 DUF2401: Putative secretory protein (DUF2401)
Probab=24.97 E-value=15 Score=14.70 Aligned_cols=43 Identities=26% Similarity=0.469 Sum_probs=26.3
Q ss_pred HCCCEEECCCCEEEEEEEEEEEEEEEEEECC----------EEEEEEEEEEEE
Q ss_conf 5465133698379999988642357875468----------068888889999
Q T0566 26 LSNLKIEKEDLTIYFDNLQVSGNACVSIRKG----------KQINSFEYIIKF 68 (156)
Q Consensus 26 L~~~~ve~~~~~~~v~~v~v~GdA~V~~RKG----------K~i~~ydl~i~l 68 (156)
|.+..+.++.--..++..+|+|+..=-.|.| .+||+|||++-.
T Consensus 59 L~d~~i~s~~E~~I~s~~~C~g~~CG~yR~Gi~AyhGF~G~~K~FlfEF~MP~ 111 (234)
T PF10287_consen 59 LEDTTISSNKEFIIFSDQKCSGDDCGYYRPGIPAYHGFGGATKMFLFEFSMPH 111 (234)
T ss_pred CCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 16826068976999628964799765304897544577886258999987888
No 4
>PF09862 DUF2089: Protein of unknown function(DUF2089)
Probab=16.15 E-value=14 Score=14.87 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=38.0
Q ss_pred CCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82788898624333788887635899985178842688999998742179999999988999986
Q T0566 79 KDYFGGSVEIPDFSTFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLK 143 (156)
Q Consensus 79 ~~~~~G~i~IPels~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e 143 (156)
+..+.|..+.|.|+.= +..+.+|.-..-..+.+...+.+.+ ..--|.+|..|...++.|--
T Consensus 19 ~t~ieG~F~~~~~~~L--~~E~l~Fi~~Fl~~~GnlKe~ak~l--giSYpTvR~rLd~ii~~lg~ 79 (113)
T PF09862_consen 19 GTEIEGEFELSWFSRL--SPEDLEFIKLFLKCRGNLKEVAKEL--GISYPTVRNRLDRIIEKLGY 79 (113)
T ss_pred CCEEEEEECCHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHH--CCCHHHHHHHHHHHHHHHCC
T ss_conf 8778744443566249--9999999999999189899999997--88828999999999998179
No 5
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 This domain is found N-terminal to IPR013535 from INTERPRO and binds to ubiquitin . ; PDB: 2k89_A 2k8a_A 2k8c_B 2k8b_B.
Probab=13.21 E-value=32 Score=12.83 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=44.7
Q ss_pred EEEEEEEEECCEEEEEEEEEEEEEEEE--EEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCC----------CCH
Q ss_conf 423578754680688888899999999--97169982788898624333788887635899985178----------842
Q T0566 46 SGNACVSIRKGKQINSFEYIIKFEWLY--SKKKEGKDYFGGSVEIPDFSTFSLEENDYAINIERTDE----------SEN 113 (156)
Q Consensus 46 ~GdA~V~~RKGK~i~~ydl~i~l~w~g--~~~~~~~~~~~G~i~IPels~en~dede~~~~v~~~~~----------~~~ 113 (156)
+|+..+.....-.+-.|-|+ .-.|.- .+-++.. ...+..-..+ +..+.||.|.|.+.+. ++.
T Consensus 7 eG~~~~vr~~~g~i~ay~ws-~~~W~kIG~Vv~~~~--~~~~~~k~~~---~gkeYDyVFdVdi~dg~~~lkLpyN~~dn 80 (116)
T PF09070_consen 7 EGQVKMVRNGNGKIEAYQWS-SGKWIKIGDVVGGPS--SGSSGGKKYF---EGKEYDYVFDVDIEDGGPPLKLPYNVGDN 80 (116)
T ss_dssp ---------------------------------------TTS---EE-------EESEEEEE--------EEEEE-TTS-
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCEEEEEEEECCCC--CCCCCCCEEE---CCCCEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 66699997589858899953-786059668976888--7755571343---57200289999826998411067217999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688999-99874217999999998899998
Q T0566 114 LRFIYD-SILKKEGKEKIKECLKNFQEDLL 142 (156)
Q Consensus 114 ~~~~~~-~~~~k~~~~~ir~~l~~f~~~L~ 142 (156)
.-.+.. -+.+..+++.-++.+..|+..=.
T Consensus 81 p~~aA~kFl~~n~Lp~~yldqI~~FI~~N~ 110 (116)
T PF09070_consen 81 PYEAAQKFLERNNLPQSYLDQIANFIIQNT 110 (116)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 899999999882999899999999999706
No 6
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; PDB: 1z7l_A 1r4n_D 3dbr_B 1yov_B 3dbl_H 3dbh_F 1r4m_B 1tt5_D 2nvu_B 1y8q_D ....
Probab=9.61 E-value=35 Score=12.60 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8976999999975
Q T0566 14 YNKWAESYIKYNL 26 (156)
Q Consensus 14 ~t~Wsk~~lkelL 26 (156)
|..|||..+..+|
T Consensus 32 cI~wAk~~f~~~F 44 (45)
T PF10585_consen 32 CIEWAKDLFEKLF 44 (45)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999870
No 7
>PF10608 MAGUK_N_PEST: Polyubiquitination (PEST) N-terminal domain of MAGUK; PDB: 1zok_A 1kef_A 1iu0_A 2ka9_A 1rgr_A 1iu2_A 2i1n_B.
Probab=8.84 E-value=29 Score=13.04 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=7.7
Q ss_pred CCCHHHCCCCHHH
Q ss_conf 7521102789769
Q T0566 6 LYFQGERNYNKWA 18 (156)
Q Consensus 6 ~wHW~EKn~t~Ws 18 (156)
.|||+|||..++-
T Consensus 29 Lv~vseknls~~e 41 (89)
T PF10608_consen 29 LVHVSEKNLSQIE 41 (89)
T ss_dssp -------------
T ss_pred EEEECCCCCCCCC
T ss_conf 1450357756322
No 8
>PF01567 Hanta_G1: Hantavirus glycoprotein G1; InterPro: IPR002534 The medium (M) genome segment of Hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins as a polyprotein precursor. This entry represents the G1 glycoprotein.
Probab=8.55 E-value=46 Score=11.88 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=5.9
Q ss_pred EEEEEEECCCCC
Q ss_conf 888986243337
Q T0566 82 FGGSVEIPDFST 93 (156)
Q Consensus 82 ~~G~i~IPels~ 93 (156)
+.|.-=+|+.+-
T Consensus 182 ~EGkCF~Pd~t~ 193 (542)
T PF01567_consen 182 VEGKCFNPDHTL 193 (542)
T ss_pred ECCEECCCCCEE
T ss_conf 233303766423
No 9
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1k4n_A.
Probab=6.50 E-value=58 Score=11.31 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEEEECCEEEEEEEEEEEEEE
Q ss_conf 787546806888888999999
Q T0566 50 CVSIRKGKQINSFEYIIKFEW 70 (156)
Q Consensus 50 ~V~~RKGK~i~~ydl~i~l~w 70 (156)
|=|+.-|++||+|+|+--+.+
T Consensus 63 Sen~INGRPI~l~~L~~Pl~~ 83 (185)
T PF06185_consen 63 SENMINGRPICLFELNQPLQV 83 (185)
T ss_dssp EEEE----EEEEEEEEEEEEE
T ss_pred HHCCCCCEEEEEEECCCCCEE
T ss_conf 306348805899974886022
No 10
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL
Probab=6.41 E-value=59 Score=11.28 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 589998517884268899999874217999999998899998617
Q T0566 101 YAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLKHD 145 (156)
Q Consensus 101 ~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e~~ 145 (156)
++++.....++..+..+...+-+..+.+.++++|.+|.+.|++++
T Consensus 94 lv~e~i~d~dG~~s~TL~~~l~~~~~~~~~~~~L~~f~~~l~~~~ 138 (199)
T PF10707_consen 94 LVFELIRDFDGNPSPTLDDYLKRGLLDAALRQALDEFKRYLLDNH 138 (199)
T ss_pred EEEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 999987889989074399999738845999999999999999769
Done!