Query T0566 pfc0270w, Plasmodium Falciparum, 156 residues
Match_columns 156
No_of_seqs 104 out of 232
Neff 6.4
Searched_HMMs 15564
Date Tue Jun 1 15:08:20 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0566.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0566.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1usub_ d.83.2.1 (B:) Activato 100.0 1.2E-41 1.4E-45 254.4 11.5 135 11-147 2-142 (142)
2 d1usub_ d.83.2.1 (B:) Activato 100.0 4.6E-41 2.8E-45 251.1 11.2 135 11-147 2-141 (142)
3 d2vbua1 b.43.5.2 (A:2-132) CTP 24.8 22 0.0014 14.4 5.9 74 15-95 23-101 (131)
4 d1lsha2 f.7.1.1 (A:17-284) Lip 14.1 39 0.0025 13.0 4.4 44 10-53 99-144 (268)
5 d1oxea_ d.22.1.1 (A:) Green fl 8.7 60 0.0038 11.9 3.5 36 20-55 80-122 (227)
6 d1m1ha1 b.114.1.1 (A:51-131) N 8.2 25 0.0016 14.1 -1.1 10 44-53 48-57 (81)
7 d1sgva2 d.265.1.2 (A:3-235) Ps 8.0 64 0.0041 11.8 2.0 56 11-66 90-153 (233)
8 d1k4na_ d.32.1.5 (A:) Hypothet 6.3 79 0.005 11.3 4.4 39 47-93 68-107 (190)
9 d1twfc1 d.74.3.1 (C:3-41,C:173 6.0 82 0.0053 11.1 7.0 49 93-147 87-135 (135)
10 d1sg1x4 g.24.1.1 (X:138-161) L 5.7 54 0.0034 12.2 -0.5 7 12-18 13-19 (26)
No 1
>d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} SCOP: d1usvf_ d1usvb_ d1usvd_ d1usvh_
Probab=100.00 E-value=1.2e-41 Score=254.40 Aligned_cols=135 Identities=23% Similarity=0.389 Sum_probs=120.8
Q ss_pred HCCCCHHHHHHHHHHHCCCEEEC--CCCEEEEEEE-EEEEEEEEEEECCEEEEEEEEEEEEEEEEEEECCCC--CEEEEE
Q ss_conf 02789769999999754651336--9837999998-864235787546806888888999999999716998--278889
Q T0566 11 ERNYNKWAESYIKYNLSNLKIEK--EDLTIYFDNL-QVSGNACVSIRKGKQINSFEYIIKFEWLYSKKKEGK--DYFGGS 85 (156)
Q Consensus 11 EKn~t~Wsk~~lkelL~~~~ve~--~~~~~~v~~v-~v~GdA~V~~RKGK~i~~ydl~i~l~w~g~~~~~~~--~~~~G~ 85 (156)
||||+|||++||+++|.++.+++ +++.+.|+.+ +|+|||+|||||||+||+|||+|+|+|+|..+++++ ..++|+
T Consensus 2 EKn~~~Wsk~~l~e~l~~~~~~~~~~~~~~~i~~v~~veGda~vs~RKGK~i~~ye~~i~l~w~g~~~~~~~~~~~~~G~ 81 (142)
T d1usub_ 2 DKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLKITVLIEGHVDSKDGSALPFEGS 81 (142)
T ss_dssp CEETHHHHHHHHHHHHTTCBC-----CCEEEECCCCEEEEECEECCC-CCCCCCCEEEEEEEEEEECCC----CCEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEEECCCCCCEEEEEEE
T ss_conf 88777889999988615522221688679999874233237888863780555788999999999852787643688888
Q ss_pred EEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 8624333788887635899985178842688999998742179999999988999986-1787
Q T0566 86 VEIPDFSTFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLK-HDKN 147 (156)
Q Consensus 86 i~IPels~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e-~~~~ 147 (156)
|+|||||++| ++|||+|.++++++++..++++ ++||+.++|+||+.|.+|.++|++ |++|
T Consensus 82 i~IPe~s~d~-~~dd~e~~vs~~~~~~~~~~~k-~~ir~~~~p~lr~~l~~f~~~L~~~h~kd 142 (142)
T d1usub_ 82 INVPEVAFDS-EASSYQFDISIFKETSELSEAK-PLIRSELLPKLRQIFQQFGKDLLATHGND 142 (142)
T ss_dssp EEEEEEETTC-CGGGCCCEEEETTCCTTSTTHH-HHHHHHTHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEECCCCCCC-CCCCEEEEEEEECCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8524300589-9974079999727996346899-99987305999999999999999862479
No 2
>d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=4.6e-41 Score=251.09 Aligned_cols=135 Identities=23% Similarity=0.382 Sum_probs=121.1
Q ss_pred HCCCCHHHHHHHHHHHCCCEEEC--CCCEEEEEEE-EEEEEEEEEEECCEEEEEEEEEEEEEEEEEEECCC--CCEEEEE
Q ss_conf 02789769999999754651336--9837999998-86423578754680688888899999999971699--8278889
Q T0566 11 ERNYNKWAESYIKYNLSNLKIEK--EDLTIYFDNL-QVSGNACVSIRKGKQINSFEYIIKFEWLYSKKKEG--KDYFGGS 85 (156)
Q Consensus 11 EKn~t~Wsk~~lkelL~~~~ve~--~~~~~~v~~v-~v~GdA~V~~RKGK~i~~ydl~i~l~w~g~~~~~~--~~~~~G~ 85 (156)
||||++|||+||+++|.++.++. +++.+.|+.| +|+|||+|||||||+||+|||+|+|+|+|++.+.+ +..++|+
T Consensus 2 EKn~~~Wsk~~l~elL~~~~~~~~~~~~~~~i~~v~~v~GdA~V~~RKGK~i~~fd~~i~l~w~g~~~~~~~~~~~~~G~ 81 (142)
T d1usub_ 2 DKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLKITVLIEGHVDSKDGSALPFEGS 81 (142)
T ss_dssp CEETHHHHHHHHHHHHTTCBC-----CCEEEECCCCEEEEECEECCC-CCCCCCCEEEEEEEEEEECCC----CCEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEE
T ss_conf 87755889999998840464621688528999996567668999973794899999999999999985778873077789
Q ss_pred EEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 86243337888876358999851788426889999987421799999999889999861787
Q T0566 86 VEIPDFSTFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLKHDKN 147 (156)
Q Consensus 86 i~IPels~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e~~~~ 147 (156)
|+|||||++| ++|||+|.++++++++..+++ .++|++.++|+||+.|.+|+++|+++++.
T Consensus 82 i~iPe~s~d~-~~dd~~~~v~~~~~~~~~~~~-k~~i~k~~~~~lr~~l~~f~~~L~~~~s~ 141 (142)
T d1usub_ 82 INVPEVAFDS-EASSYQFDISIFKETSELSEA-KPLIRSELLPKLRQIFQQFGKDLLATHGN 141 (142)
T ss_dssp EEEEEEETTC-CGGGCCCEEEETTCCTTSTTH-HHHHHHHTHHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCCCC-CCCCEEEEEEECCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9726435778-866669999984799624689-99999873999999999999999998638
No 3
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=24.76 E-value=22 Score=14.38 Aligned_cols=74 Identities=14% Similarity=-0.004 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEEEEEEEECCEEEEEEEEE-----EEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 976999999975465133698379999988642357875468068888889-----999999997169982788898624
Q T0566 15 NKWAESYIKYNLSNLKIEKEDLTIYFDNLQVSGNACVSIRKGKQINSFEYI-----IKFEWLYSKKKEGKDYFGGSVEIP 89 (156)
Q Consensus 15 t~Wsk~~lkelL~~~~ve~~~~~~~v~~v~v~GdA~V~~RKGK~i~~ydl~-----i~l~w~g~~~~~~~~~~~G~i~IP 89 (156)
.+|=++.|+++|.-.+.++ ...+.+ +.+..++..++-.|-+|+-. =...|.+++..++ ..+.|.|-+|
T Consensus 23 ~~~Y~~qF~~~LG~~P~PG-TLNi~l-----~~~~~~~~~~~i~i~gf~~~gr~fgg~~~~~~~i~~~~-~~i~~aii~P 95 (131)
T d2vbua1 23 LPPYKEIFKKILGFEPYEG-TLNLKL-----DREFDINKFKYIETEDFEFNGKRFFGVKVLPIKILIGN-KKIDGAIVVP 95 (131)
T ss_dssp SHHHHHHHHHHHSSCCCSS-CEEEEE-----EEEECGGGSCCEECCCEEETTEEECCEEEEEEEEEETT-EEEEEEEEEE
T ss_pred CHHHHHHHHHHHCCCCCCC-EEEEEE-----CCCCCCCCCCCEEECCCCCCCCEEECEEEEEEEEECCC-CCEEEEEEEE
T ss_conf 8899999999859988898-089982-----56204020466472784369946706899999999289-9588999984
Q ss_pred CCCCCC
Q ss_conf 333788
Q T0566 90 DFSTFS 95 (156)
Q Consensus 90 els~en 95 (156)
+..++.
T Consensus 96 ~rT~h~ 101 (131)
T d2vbua1 96 KKTYHS 101 (131)
T ss_dssp SCCSSC
T ss_pred CCCCCC
T ss_conf 777899
No 4
>d1lsha2 f.7.1.1 (A:17-284) Lipovitellin-phosvitin complex; beta-sheet shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}
Probab=14.12 E-value=39 Score=12.98 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHCCCCHHHHHHHHHHHCCCEEE--CCCCEEEEEEEEEEEEEEEEE
Q ss_conf 10278976999999975465133--698379999988642357875
Q T0566 10 GERNYNKWAESYIKYNLSNLKIE--KEDLTIYFDNLQVSGNACVSI 53 (156)
Q Consensus 10 ~EKn~t~Wsk~~lkelL~~~~ve--~~~~~~~v~~v~v~GdA~V~~ 53 (156)
.+++...|+..-.+.++.-+.+. .......+.+..|.|+|.+.-
T Consensus 99 ~~~~e~~w~~NiKKgI~S~lQ~~~~~~~~~~~~~E~~V~G~C~t~Y 144 (268)
T d1lsha2 99 APPQVTDTAVNIVRGILNLFQLSLKKNQQTFELQETGVEGICQTTY 144 (268)
T ss_dssp CCTTSCHHHHHHHHHHHHHTCCCCCTTCSEEEEEEEETTEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEEE
T ss_conf 4899972135689998887506665456217998076477887899
No 5
>d1oxea_ d.22.1.1 (A:) Green fluorescent protein, GFP {Jellyfish (Aequorea victoria) [TaxId: 6100]} SCOP: d1cv7a_ d1s6za_ d1bfpa_ d1rm9a_ d1emaa_ d1q4aa_ d1q4ca_ d1q4da_ d1hcjc_ d1kp5a_ d1c4fa_ d1q4ea_ d1hcja_ d1qyqa_ d1oxfa_ d1q73a_ d2emoa_ d1emfa_ d1jc1a_ d1emca_ d1emcc_ d1gfla_ d1qyfa_ d1jc1b_ d2emna_ d1kypa_ d1b9ca_ d2emda_ d1jc1c_ d1huya_ d1yfpa_ d1f09a_ d1emma_ d1qyoa_ d1rmma_ d1jbza_ d2yfpa_ d1emka_ d1emea_ d1f0ba_ d1kysa_ d1emla_ d1qy3a_ d1rmoa_ d1mywa_ d1qxta_ d1h6ra_ d1rrxa_ d1g7ka_ d1ggxa_
Probab=8.73 E-value=60 Score=11.93 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=23.4
Q ss_pred HHHHHHHCC-CE----EE-CCCCEEEEEE-EEEEEEEEEEEEC
Q ss_conf 999997546-51----33-6983799999-8864235787546
Q T0566 20 SYIKYNLSN-LK----IE-KEDLTIYFDN-LQVSGNACVSIRK 55 (156)
Q Consensus 20 ~~lkelL~~-~~----ve-~~~~~~~v~~-v~v~GdA~V~~RK 55 (156)
+|||+-+++ .+ +. .+++.|.++. ++++|++.++..|
T Consensus 80 DyFKqsfPeGysweRt~~fEDGGv~t~~~~isle~~~f~~~~~ 122 (227)
T d1oxea_ 80 DFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIE 122 (227)
T ss_dssp CHHHHTTTTCEEEEEEEEETTSCEEEEEEEEEEETTEEEEEEE
T ss_pred CCHHHHCCCCCEEEEEEEECCCCEEEEEEEEEEECCEEEEEEE
T ss_conf 6168845788147888997088189998878984887999799
No 6
>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
Probab=8.24 E-value=25 Score=14.07 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=5.5
Q ss_pred EEEEEEEEEE
Q ss_conf 8642357875
Q T0566 44 QVSGNACVSI 53 (156)
Q Consensus 44 ~v~GdA~V~~ 53 (156)
+|+||+.||-
T Consensus 48 svegd~cvn~ 57 (81)
T d1m1ha1 48 SVEGDTCVNA 57 (81)
T ss_dssp CSTTCGGGGS
T ss_pred ECCCCCCCCC
T ss_conf 1367711277
No 7
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.04 E-value=64 Score=11.75 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=33.4
Q ss_pred HCCCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEE-EEEEEEECCE-------EEEEEEEEE
Q ss_conf 0278976999999975465133698379999988642-3578754680-------688888899
Q T0566 11 ERNYNKWAESYIKYNLSNLKIEKEDLTIYFDNLQVSG-NACVSIRKGK-------QINSFEYII 66 (156)
Q Consensus 11 EKn~t~Wsk~~lkelL~~~~ve~~~~~~~v~~v~v~G-dA~V~~RKGK-------~i~~ydl~i 66 (156)
+.+...-+.+.+++.|..+.-+....--..+.+++.| .|+---|+|+ .+.+|.+++
T Consensus 90 ~~~~~~~t~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~~~~~~r~v~I~~~~l 153 (233)
T d1sgva2 90 SVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFEL 153 (233)
T ss_dssp ECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEE
T ss_pred EECCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf 3124525299999999861771786062878756057689999871776544434201236778
No 8
>d1k4na_ d.32.1.5 (A:) Hypothetical protein YecM (EC4020) {Escherichia coli [TaxId: 562]}
Probab=6.32 E-value=79 Score=11.25 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=26.9
Q ss_pred EEE-EEEEECCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf 235-78754680688888899999999971699827888986243337
Q T0566 47 GNA-CVSIRKGKQINSFEYIIKFEWLYSKKKEGKDYFGGSVEIPDFST 93 (156)
Q Consensus 47 GdA-~V~~RKGK~i~~ydl~i~l~w~g~~~~~~~~~~~G~i~IPels~ 93 (156)
|+- +=|+.-|++||+|+|+=-+.+.+-. + --|+.|+=.+
T Consensus 68 G~llSen~INGRPI~l~~L~~Pl~~~~~~-------I-~ciELP~P~~ 107 (190)
T d1k4na_ 68 GELLSENMINGRPICLFKLHEPVQVAHWQ-------F-SIVELPWPGE 107 (190)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEETTEE-------E-EEEEEECCCS
T ss_pred CHHHHCCEECCEEEEEEECCCCCEECCCE-------E-EEEEECCCCC
T ss_conf 63313474278058999758870118957-------7-7998479999
No 9
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.97 E-value=82 Score=11.14 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7888876358999851788426889999987421799999999889999861787
Q T0566 93 TFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLKHDKN 147 (156)
Q Consensus 93 ~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e~~~~ 147 (156)
+.+...|.|.|.|...+.-+. ..+-..++..++.+|..+...|-+...+
T Consensus 87 d~~akpd~F~f~VEs~G~l~p------~~Iv~~ai~iL~~Kl~~l~~~L~~~dq~ 135 (135)
T d1twfc1 87 DYKAQADTFYMNVESVGSIPV------DQVVVRGIDTLQKKVASILLALTQMDQD 135 (135)
T ss_dssp CTTCCCCCEEEEEEECSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCEEEEEEEECCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 877898779999870467898------9999999999999999999999887539
No 10
>d1sg1x4 g.24.1.1 (X:138-161) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.67 E-value=54 Score=12.20 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=0.0
Q ss_pred CCCCHHH
Q ss_conf 2789769
Q T0566 12 RNYNKWA 18 (156)
Q Consensus 12 Kn~t~Ws 18 (156)
+.|+||+
T Consensus 13 rectpwa 19 (26)
T d1sg1x4 13 RECTPWA 19 (26)
T ss_dssp BCCBTTB
T ss_pred HHCCCCC
T ss_conf 7378743
Done!