Query         T0566 pfc0270w, Plasmodium Falciparum, 156 residues
Match_columns 156
No_of_seqs    104 out of 232
Neff          6.4 
Searched_HMMs 15564
Date          Tue Jun  1 15:08:20 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0566.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0566.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1usub_ d.83.2.1 (B:) Activato 100.0 1.2E-41 1.4E-45  254.4  11.5  135   11-147     2-142 (142)
  2 d1usub_ d.83.2.1 (B:) Activato 100.0 4.6E-41 2.8E-45  251.1  11.2  135   11-147     2-141 (142)
  3 d2vbua1 b.43.5.2 (A:2-132) CTP  24.8      22  0.0014   14.4   5.9   74   15-95     23-101 (131)
  4 d1lsha2 f.7.1.1 (A:17-284) Lip  14.1      39  0.0025   13.0   4.4   44   10-53     99-144 (268)
  5 d1oxea_ d.22.1.1 (A:) Green fl   8.7      60  0.0038   11.9   3.5   36   20-55     80-122 (227)
  6 d1m1ha1 b.114.1.1 (A:51-131) N   8.2      25  0.0016   14.1  -1.1   10   44-53     48-57  (81)
  7 d1sgva2 d.265.1.2 (A:3-235) Ps   8.0      64  0.0041   11.8   2.0   56   11-66     90-153 (233)
  8 d1k4na_ d.32.1.5 (A:) Hypothet   6.3      79   0.005   11.3   4.4   39   47-93     68-107 (190)
  9 d1twfc1 d.74.3.1 (C:3-41,C:173   6.0      82  0.0053   11.1   7.0   49   93-147    87-135 (135)
 10 d1sg1x4 g.24.1.1 (X:138-161) L   5.7      54  0.0034   12.2  -0.5    7   12-18     13-19  (26)

No 1  
>d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} SCOP: d1usvf_ d1usvb_ d1usvd_ d1usvh_
Probab=100.00  E-value=1.2e-41  Score=254.40  Aligned_cols=135  Identities=23%  Similarity=0.389  Sum_probs=120.8

Q ss_pred             HCCCCHHHHHHHHHHHCCCEEEC--CCCEEEEEEE-EEEEEEEEEEECCEEEEEEEEEEEEEEEEEEECCCC--CEEEEE
Q ss_conf             02789769999999754651336--9837999998-864235787546806888888999999999716998--278889
Q T0566            11 ERNYNKWAESYIKYNLSNLKIEK--EDLTIYFDNL-QVSGNACVSIRKGKQINSFEYIIKFEWLYSKKKEGK--DYFGGS   85 (156)
Q Consensus        11 EKn~t~Wsk~~lkelL~~~~ve~--~~~~~~v~~v-~v~GdA~V~~RKGK~i~~ydl~i~l~w~g~~~~~~~--~~~~G~   85 (156)
                      ||||+|||++||+++|.++.+++  +++.+.|+.+ +|+|||+|||||||+||+|||+|+|+|+|..+++++  ..++|+
T Consensus         2 EKn~~~Wsk~~l~e~l~~~~~~~~~~~~~~~i~~v~~veGda~vs~RKGK~i~~ye~~i~l~w~g~~~~~~~~~~~~~G~   81 (142)
T d1usub_           2 DKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLKITVLIEGHVDSKDGSALPFEGS   81 (142)
T ss_dssp             CEETHHHHHHHHHHHHTTCBC-----CCEEEECCCCEEEEECEECCC-CCCCCCCEEEEEEEEEEECCC----CCEEEEE
T ss_pred             CCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEEECCCCCCEEEEEEE
T ss_conf             88777889999988615522221688679999874233237888863780555788999999999852787643688888


Q ss_pred             EEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf             8624333788887635899985178842688999998742179999999988999986-1787
Q T0566            86 VEIPDFSTFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLK-HDKN  147 (156)
Q Consensus        86 i~IPels~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e-~~~~  147 (156)
                      |+|||||++| ++|||+|.++++++++..++++ ++||+.++|+||+.|.+|.++|++ |++|
T Consensus        82 i~IPe~s~d~-~~dd~e~~vs~~~~~~~~~~~k-~~ir~~~~p~lr~~l~~f~~~L~~~h~kd  142 (142)
T d1usub_          82 INVPEVAFDS-EASSYQFDISIFKETSELSEAK-PLIRSELLPKLRQIFQQFGKDLLATHGND  142 (142)
T ss_dssp             EEEEEEETTC-CGGGCCCEEEETTCCTTSTTHH-HHHHHHTHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EEECCCCCCC-CCCCEEEEEEEECCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             8524300589-9974079999727996346899-99987305999999999999999862479


No 2  
>d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=4.6e-41  Score=251.09  Aligned_cols=135  Identities=23%  Similarity=0.382  Sum_probs=121.1

Q ss_pred             HCCCCHHHHHHHHHHHCCCEEEC--CCCEEEEEEE-EEEEEEEEEEECCEEEEEEEEEEEEEEEEEEECCC--CCEEEEE
Q ss_conf             02789769999999754651336--9837999998-86423578754680688888899999999971699--8278889
Q T0566            11 ERNYNKWAESYIKYNLSNLKIEK--EDLTIYFDNL-QVSGNACVSIRKGKQINSFEYIIKFEWLYSKKKEG--KDYFGGS   85 (156)
Q Consensus        11 EKn~t~Wsk~~lkelL~~~~ve~--~~~~~~v~~v-~v~GdA~V~~RKGK~i~~ydl~i~l~w~g~~~~~~--~~~~~G~   85 (156)
                      ||||++|||+||+++|.++.++.  +++.+.|+.| +|+|||+|||||||+||+|||+|+|+|+|++.+.+  +..++|+
T Consensus         2 EKn~~~Wsk~~l~elL~~~~~~~~~~~~~~~i~~v~~v~GdA~V~~RKGK~i~~fd~~i~l~w~g~~~~~~~~~~~~~G~   81 (142)
T d1usub_           2 DKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLKITVLIEGHVDSKDGSALPFEGS   81 (142)
T ss_dssp             CEETHHHHHHHHHHHHTTCBC-----CCEEEECCCCEEEEECEECCC-CCCCCCCEEEEEEEEEEECCC----CCEEEEE
T ss_pred             CCCCCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEE
T ss_conf             87755889999998840464621688528999996567668999973794899999999999999985778873077789


Q ss_pred             EEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             86243337888876358999851788426889999987421799999999889999861787
Q T0566            86 VEIPDFSTFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLKHDKN  147 (156)
Q Consensus        86 i~IPels~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e~~~~  147 (156)
                      |+|||||++| ++|||+|.++++++++..+++ .++|++.++|+||+.|.+|+++|+++++.
T Consensus        82 i~iPe~s~d~-~~dd~~~~v~~~~~~~~~~~~-k~~i~k~~~~~lr~~l~~f~~~L~~~~s~  141 (142)
T d1usub_          82 INVPEVAFDS-EASSYQFDISIFKETSELSEA-KPLIRSELLPKLRQIFQQFGKDLLATHGN  141 (142)
T ss_dssp             EEEEEEETTC-CGGGCCCEEEETTCCTTSTTH-HHHHHHHTHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EECCCCCCCC-CCCCEEEEEEECCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9726435778-866669999984799624689-99999873999999999999999998638


No 3  
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=24.76  E-value=22  Score=14.38  Aligned_cols=74  Identities=14%  Similarity=-0.004  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEEEEEEEECCEEEEEEEEE-----EEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf             976999999975465133698379999988642357875468068888889-----999999997169982788898624
Q T0566            15 NKWAESYIKYNLSNLKIEKEDLTIYFDNLQVSGNACVSIRKGKQINSFEYI-----IKFEWLYSKKKEGKDYFGGSVEIP   89 (156)
Q Consensus        15 t~Wsk~~lkelL~~~~ve~~~~~~~v~~v~v~GdA~V~~RKGK~i~~ydl~-----i~l~w~g~~~~~~~~~~~G~i~IP   89 (156)
                      .+|=++.|+++|.-.+.++ ...+.+     +.+..++..++-.|-+|+-.     =...|.+++..++ ..+.|.|-+|
T Consensus        23 ~~~Y~~qF~~~LG~~P~PG-TLNi~l-----~~~~~~~~~~~i~i~gf~~~gr~fgg~~~~~~~i~~~~-~~i~~aii~P   95 (131)
T d2vbua1          23 LPPYKEIFKKILGFEPYEG-TLNLKL-----DREFDINKFKYIETEDFEFNGKRFFGVKVLPIKILIGN-KKIDGAIVVP   95 (131)
T ss_dssp             SHHHHHHHHHHHSSCCCSS-CEEEEE-----EEEECGGGSCCEECCCEEETTEEECCEEEEEEEEEETT-EEEEEEEEEE
T ss_pred             CHHHHHHHHHHHCCCCCCC-EEEEEE-----CCCCCCCCCCCEEECCCCCCCCEEECEEEEEEEEECCC-CCEEEEEEEE
T ss_conf             8899999999859988898-089982-----56204020466472784369946706899999999289-9588999984


Q ss_pred             CCCCCC
Q ss_conf             333788
Q T0566            90 DFSTFS   95 (156)
Q Consensus        90 els~en   95 (156)
                      +..++.
T Consensus        96 ~rT~h~  101 (131)
T d2vbua1          96 KKTYHS  101 (131)
T ss_dssp             SCCSSC
T ss_pred             CCCCCC
T ss_conf             777899


No 4  
>d1lsha2 f.7.1.1 (A:17-284) Lipovitellin-phosvitin complex; beta-sheet shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}
Probab=14.12  E-value=39  Score=12.98  Aligned_cols=44  Identities=14%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             HHCCCCHHHHHHHHHHHCCCEEE--CCCCEEEEEEEEEEEEEEEEE
Q ss_conf             10278976999999975465133--698379999988642357875
Q T0566            10 GERNYNKWAESYIKYNLSNLKIE--KEDLTIYFDNLQVSGNACVSI   53 (156)
Q Consensus        10 ~EKn~t~Wsk~~lkelL~~~~ve--~~~~~~~v~~v~v~GdA~V~~   53 (156)
                      .+++...|+..-.+.++.-+.+.  .......+.+..|.|+|.+.-
T Consensus        99 ~~~~e~~w~~NiKKgI~S~lQ~~~~~~~~~~~~~E~~V~G~C~t~Y  144 (268)
T d1lsha2          99 APPQVTDTAVNIVRGILNLFQLSLKKNQQTFELQETGVEGICQTTY  144 (268)
T ss_dssp             CCTTSCHHHHHHHHHHHHHTCCCCCTTCSEEEEEEEETTEEEEEEE
T ss_pred             ECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEEE
T ss_conf             4899972135689998887506665456217998076477887899


No 5  
>d1oxea_ d.22.1.1 (A:) Green fluorescent protein, GFP {Jellyfish (Aequorea victoria) [TaxId: 6100]} SCOP: d1cv7a_ d1s6za_ d1bfpa_ d1rm9a_ d1emaa_ d1q4aa_ d1q4ca_ d1q4da_ d1hcjc_ d1kp5a_ d1c4fa_ d1q4ea_ d1hcja_ d1qyqa_ d1oxfa_ d1q73a_ d2emoa_ d1emfa_ d1jc1a_ d1emca_ d1emcc_ d1gfla_ d1qyfa_ d1jc1b_ d2emna_ d1kypa_ d1b9ca_ d2emda_ d1jc1c_ d1huya_ d1yfpa_ d1f09a_ d1emma_ d1qyoa_ d1rmma_ d1jbza_ d2yfpa_ d1emka_ d1emea_ d1f0ba_ d1kysa_ d1emla_ d1qy3a_ d1rmoa_ d1mywa_ d1qxta_ d1h6ra_ d1rrxa_ d1g7ka_ d1ggxa_
Probab=8.73  E-value=60  Score=11.93  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=23.4

Q ss_pred             HHHHHHHCC-CE----EE-CCCCEEEEEE-EEEEEEEEEEEEC
Q ss_conf             999997546-51----33-6983799999-8864235787546
Q T0566            20 SYIKYNLSN-LK----IE-KEDLTIYFDN-LQVSGNACVSIRK   55 (156)
Q Consensus        20 ~~lkelL~~-~~----ve-~~~~~~~v~~-v~v~GdA~V~~RK   55 (156)
                      +|||+-+++ .+    +. .+++.|.++. ++++|++.++..|
T Consensus        80 DyFKqsfPeGysweRt~~fEDGGv~t~~~~isle~~~f~~~~~  122 (227)
T d1oxea_          80 DFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIE  122 (227)
T ss_dssp             CHHHHTTTTCEEEEEEEEETTSCEEEEEEEEEEETTEEEEEEE
T ss_pred             CCHHHHCCCCCEEEEEEEECCCCEEEEEEEEEEECCEEEEEEE
T ss_conf             6168845788147888997088189998878984887999799


No 6  
>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
Probab=8.24  E-value=25  Score=14.07  Aligned_cols=10  Identities=40%  Similarity=0.939  Sum_probs=5.5

Q ss_pred             EEEEEEEEEE
Q ss_conf             8642357875
Q T0566            44 QVSGNACVSI   53 (156)
Q Consensus        44 ~v~GdA~V~~   53 (156)
                      +|+||+.||-
T Consensus        48 svegd~cvn~   57 (81)
T d1m1ha1          48 SVEGDTCVNA   57 (81)
T ss_dssp             CSTTCGGGGS
T ss_pred             ECCCCCCCCC
T ss_conf             1367711277


No 7  
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.04  E-value=64  Score=11.75  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=33.4

Q ss_pred             HCCCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEE-EEEEEEECCE-------EEEEEEEEE
Q ss_conf             0278976999999975465133698379999988642-3578754680-------688888899
Q T0566            11 ERNYNKWAESYIKYNLSNLKIEKEDLTIYFDNLQVSG-NACVSIRKGK-------QINSFEYII   66 (156)
Q Consensus        11 EKn~t~Wsk~~lkelL~~~~ve~~~~~~~v~~v~v~G-dA~V~~RKGK-------~i~~ydl~i   66 (156)
                      +.+...-+.+.+++.|..+.-+....--..+.+++.| .|+---|+|+       .+.+|.+++
T Consensus        90 ~~~~~~~t~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~~~~~~r~v~I~~~~l  153 (233)
T d1sgva2          90 SVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFEL  153 (233)
T ss_dssp             ECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEE
T ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf             3124525299999999861771786062878756057689999871776544434201236778


No 8  
>d1k4na_ d.32.1.5 (A:) Hypothetical protein YecM (EC4020) {Escherichia coli [TaxId: 562]}
Probab=6.32  E-value=79  Score=11.25  Aligned_cols=39  Identities=21%  Similarity=0.228  Sum_probs=26.9

Q ss_pred             EEE-EEEEECCEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCC
Q ss_conf             235-78754680688888899999999971699827888986243337
Q T0566            47 GNA-CVSIRKGKQINSFEYIIKFEWLYSKKKEGKDYFGGSVEIPDFST   93 (156)
Q Consensus        47 GdA-~V~~RKGK~i~~ydl~i~l~w~g~~~~~~~~~~~G~i~IPels~   93 (156)
                      |+- +=|+.-|++||+|+|+=-+.+.+-.       + --|+.|+=.+
T Consensus        68 G~llSen~INGRPI~l~~L~~Pl~~~~~~-------I-~ciELP~P~~  107 (190)
T d1k4na_          68 GELLSENMINGRPICLFKLHEPVQVAHWQ-------F-SIVELPWPGE  107 (190)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEETTEE-------E-EEEEEECCCS
T ss_pred             CHHHHCCEECCEEEEEEECCCCCEECCCE-------E-EEEEECCCCC
T ss_conf             63313474278058999758870118957-------7-7998479999


No 9  
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.97  E-value=82  Score=11.14  Aligned_cols=49  Identities=10%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             7888876358999851788426889999987421799999999889999861787
Q T0566            93 TFSLEENDYAINIERTDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLKHDKN  147 (156)
Q Consensus        93 ~en~dede~~~~v~~~~~~~~~~~~~~~~~~k~~~~~ir~~l~~f~~~L~e~~~~  147 (156)
                      +.+...|.|.|.|...+.-+.      ..+-..++..++.+|..+...|-+...+
T Consensus        87 d~~akpd~F~f~VEs~G~l~p------~~Iv~~ai~iL~~Kl~~l~~~L~~~dq~  135 (135)
T d1twfc1          87 DYKAQADTFYMNVESVGSIPV------DQVVVRGIDTLQKKVASILLALTQMDQD  135 (135)
T ss_dssp             CTTCCCCCEEEEEEECSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCEEEEEEEECCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             877898779999870467898------9999999999999999999999887539


No 10 
>d1sg1x4 g.24.1.1 (X:138-161) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.67  E-value=54  Score=12.20  Aligned_cols=7  Identities=43%  Similarity=1.028  Sum_probs=0.0

Q ss_pred             CCCCHHH
Q ss_conf             2789769
Q T0566            12 RNYNKWA   18 (156)
Q Consensus        12 Kn~t~Ws   18 (156)
                      +.|+||+
T Consensus        13 rectpwa   19 (26)
T d1sg1x4          13 RECTPWA   19 (26)
T ss_dssp             BCCBTTB
T ss_pred             HHCCCCC
T ss_conf             7378743


Done!