Query T0567 NTPase domain of the Sigma-54 transport activator, E. coli, 145 residues
Match_columns 145
No_of_seqs 117 out of 4618
Neff 7.9
Searched_HMMs 22458
Date Tue Jun 1 15:10:23 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0567.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0567.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ny5_A Transcriptional regulat 100.0 0 0 270.2 17.3 144 2-145 138-311 (387)
2 3dzd_A Transcriptional regulat 100.0 1.4E-44 0 258.7 16.2 143 2-145 130-302 (368)
3 1ojl_A Transcriptional regulat 100.0 2.3E-42 0 246.8 17.2 144 2-145 3-176 (304)
4 2bjv_A PSP operon transcriptio 100.0 7.7E-39 3.4E-43 227.9 16.6 144 2-145 7-180 (265)
5 3co5_A Putative two-component 100.0 1.1E-38 5E-43 227.0 8.2 139 1-145 4-143 (143)
6 1g8p_A Magnesium-chelatase 38 99.6 5.9E-15 2.6E-19 99.5 9.2 132 2-142 25-216 (350)
7 1in4_A RUVB, holliday junction 99.6 3.6E-14 1.6E-18 95.4 13.1 132 2-144 26-180 (334)
8 1ofh_A ATP-dependent HSL prote 99.5 5.7E-13 2.5E-17 88.9 10.9 137 2-145 16-203 (310)
9 1njg_A DNA polymerase III subu 99.4 1.4E-12 6.2E-17 86.8 12.1 133 2-144 24-185 (250)
10 1jr3_A DNA polymerase III subu 99.4 7.1E-12 3.2E-16 83.0 12.2 133 2-144 17-178 (373)
11 1qvr_A CLPB protein; coiled co 99.4 1.4E-11 6.1E-16 81.5 13.2 143 2-145 559-758 (854)
12 1hqc_A RUVB; extended AAA-ATPa 99.4 5.4E-12 2.4E-16 83.7 10.6 131 2-143 13-167 (324)
13 1d2n_A N-ethylmaleimide-sensit 99.4 1.1E-11 4.7E-16 82.1 11.8 132 3-144 35-198 (272)
14 1lv7_A FTSH; alpha/beta domain 99.4 8.1E-12 3.6E-16 82.7 11.1 132 2-144 13-182 (257)
15 1sxj_C Activator 1 40 kDa subu 99.3 1.1E-11 4.8E-16 82.0 11.0 132 2-144 26-169 (340)
16 1iqp_A RFCS; clamp loader, ext 99.3 6.9E-12 3.1E-16 83.1 9.6 132 2-144 26-169 (327)
17 2chg_A Replication factor C sm 99.3 4.2E-11 1.9E-15 78.9 13.0 133 2-145 18-162 (226)
18 3b9p_A CG5977-PA, isoform A; A 99.3 2.3E-11 1E-15 80.3 11.5 133 2-145 22-190 (297)
19 1iy2_A ATP-dependent metallopr 99.3 4.9E-12 2.2E-16 83.9 7.9 112 2-116 41-188 (278)
20 1r6b_X CLPA protein; AAA+, N-t 99.3 1.4E-11 6E-16 81.5 10.1 140 2-145 459-654 (758)
21 1ixz_A ATP-dependent metallopr 99.3 9.8E-12 4.4E-16 82.2 8.2 111 2-115 17-163 (254)
22 2ce7_A Cell division protein F 99.3 8.4E-12 3.8E-16 82.6 7.7 124 2-128 17-179 (476)
23 1sxj_B Activator 1 37 kDa subu 99.3 2.3E-11 1E-15 80.3 9.3 132 2-144 22-166 (323)
24 3eie_A Vacuolar protein sortin 99.3 1.9E-11 8.5E-16 80.7 8.9 132 2-144 19-184 (322)
25 1um8_A ATP-dependent CLP prote 99.3 1.3E-10 5.8E-15 76.2 12.9 78 23-103 71-178 (376)
26 3cf0_A Transitional endoplasmi 99.2 2.1E-11 9.5E-16 80.4 8.3 111 2-115 16-163 (301)
27 3h4m_A Proteasome-activating n 99.2 3.9E-11 1.7E-15 79.0 9.3 111 2-115 18-165 (285)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.2 4.8E-11 2.1E-15 78.6 9.7 112 2-116 7-155 (262)
29 1xwi_A SKD1 protein; VPS4B, AA 99.2 1E-10 4.6E-15 76.7 11.1 133 2-144 13-179 (322)
30 2qp9_X Vacuolar protein sortin 99.2 5.1E-11 2.3E-15 78.4 9.3 132 2-144 52-217 (355)
31 2gno_A DNA polymerase III, gam 99.2 8.9E-11 4E-15 77.1 10.5 127 5-140 1-139 (305)
32 2r44_A Uncharacterized protein 99.2 8.6E-12 3.8E-16 82.6 5.2 95 3-104 29-137 (331)
33 2dhr_A FTSH; AAA+ protein, hex 99.2 5.7E-11 2.5E-15 78.1 9.2 124 2-128 32-194 (499)
34 1l8q_A Chromosomal replication 99.2 1.7E-10 7.6E-15 75.6 11.4 138 3-143 14-166 (324)
35 3hws_A ATP-dependent CLP prote 99.2 4E-11 1.8E-15 79.0 8.1 97 3-102 17-156 (363)
36 1sxj_D Activator 1 41 kDa subu 99.2 1.2E-10 5.3E-15 76.4 10.5 132 2-144 38-192 (353)
37 1sxj_E Activator 1 40 kDa subu 99.2 4.2E-11 1.9E-15 78.8 7.9 134 2-145 15-194 (354)
38 2z4s_A Chromosomal replication 99.2 1.6E-10 7.2E-15 75.7 10.7 136 4-144 109-263 (440)
39 2r62_A Cell division protease 99.2 1.1E-11 5.1E-16 81.9 4.4 87 2-91 12-118 (268)
40 1ypw_A Transitional endoplasmi 99.2 7.7E-11 3.4E-15 77.4 8.6 112 2-116 205-350 (806)
41 1e32_A P97; membrane fusion; H 99.2 2.2E-10 9.7E-15 75.0 10.2 112 2-116 205-350 (458)
42 3bos_A Putative DNA replicatio 99.1 2.8E-10 1.2E-14 74.5 9.1 129 12-144 38-174 (242)
43 1fnn_A CDC6P, cell division co 99.1 6.8E-10 3E-14 72.3 10.3 142 2-145 18-194 (389)
44 2zan_A Vacuolar protein sortin 99.1 1.3E-09 5.6E-14 70.9 10.9 133 2-144 135-301 (444)
45 1sxj_A Activator 1 95 kDa subu 99.1 5.1E-10 2.3E-14 73.0 8.6 112 2-116 40-189 (516)
46 2chq_A Replication factor C sm 99.0 2.1E-10 9.3E-15 75.1 6.0 132 2-144 18-161 (319)
47 2x8a_A Nuclear valosin-contain 99.0 8.9E-10 4E-14 71.7 9.2 112 2-116 11-156 (274)
48 3f8t_A Predicted ATPase involv 99.0 1.7E-10 7.7E-15 75.6 5.4 111 23-137 238-374 (506)
49 2kjq_A DNAA-related protein; s 99.0 3E-10 1.3E-14 74.3 6.5 113 22-143 34-149 (149)
50 3d8b_A Fidgetin-like protein 1 99.0 9.3E-10 4.2E-14 71.6 8.1 132 2-144 85-251 (357)
51 2qby_A CDC6 homolog 1, cell di 99.0 8.4E-10 3.7E-14 71.9 7.8 140 2-145 21-198 (386)
52 1ypw_A Transitional endoplasmi 99.0 1.9E-10 8.7E-15 75.3 3.3 112 2-116 478-626 (806)
53 2v1u_A Cell division control p 98.9 1.5E-09 6.7E-14 70.5 6.8 140 2-145 20-202 (387)
54 2p65_A Hypothetical protein PF 98.9 7.4E-09 3.3E-13 66.8 10.3 136 2-143 23-187 (187)
55 1a5t_A Delta prime, HOLB; zinc 98.9 1.9E-08 8.6E-13 64.5 12.3 128 8-144 5-167 (334)
56 2vhj_A Ntpase P4, P4; non- hyd 98.9 8.6E-09 3.8E-13 66.4 10.1 90 25-115 124-235 (331)
57 1jbk_A CLPB protein; beta barr 98.9 1.6E-08 7.3E-13 64.9 11.4 136 2-143 23-186 (195)
58 2c9o_A RUVB-like 1; hexameric 98.8 5.3E-09 2.4E-13 67.5 5.2 59 2-61 38-99 (456)
59 2w58_A DNAI, primosome compone 98.8 3.5E-08 1.5E-12 63.2 9.2 134 3-136 27-189 (202)
60 3ec2_A DNA replication protein 98.8 2.1E-08 9.2E-13 64.4 7.9 119 3-121 12-148 (180)
61 1r6b_X CLPA protein; AAA+, N-t 98.7 5.1E-08 2.3E-12 62.3 8.1 138 2-143 187-350 (758)
62 2qby_B CDC6 homolog 3, cell di 98.7 2.4E-07 1.1E-11 58.6 10.7 132 2-137 21-191 (384)
63 1w5s_A ORC2; CDC6, DNA replica 98.5 9E-07 4E-11 55.6 9.1 141 2-145 23-216 (412)
64 1g41_A Heat shock protein HSLU 98.4 2.3E-07 1E-11 58.7 5.4 62 3-67 17-90 (444)
65 2qgz_A Helicase loader, putati 98.4 3.8E-07 1.7E-11 57.6 6.3 118 4-123 127-265 (308)
66 3cwo_X Beta/alpha-barrel prote 98.3 3.4E-07 1.5E-11 57.9 4.7 96 9-110 131-230 (237)
67 3f9v_A Minichromosome maintena 98.3 2.9E-07 1.3E-11 58.2 3.2 115 23-137 326-471 (595)
68 1svm_A Large T antigen; AAA+ f 98.1 1.4E-06 6.3E-11 54.5 3.0 65 22-89 167-248 (377)
69 1qvr_A CLPB protein; coiled co 98.0 3.7E-05 1.7E-09 46.9 9.4 135 2-143 171-333 (854)
70 2qen_A Walker-type ATPase; unk 97.8 0.00023 1E-08 42.7 10.3 41 2-46 13-53 (350)
71 2fna_A Conserved hypothetical 97.8 0.00042 1.8E-08 41.3 11.1 51 2-61 14-64 (357)
72 1z6t_A APAF-1, apoptotic prote 97.3 0.00085 3.8E-08 39.6 8.0 44 2-45 125-168 (591)
73 2i3b_A HCR-ntpase, human cance 97.3 0.00017 7.4E-09 43.4 4.1 23 25-47 2-24 (189)
74 2p5t_B PEZT; postsegregational 97.2 0.00014 6.4E-09 43.7 2.9 90 26-120 34-150 (253)
75 3e1s_A Exodeoxyribonuclease V, 97.1 0.0006 2.7E-08 40.4 5.1 88 21-113 201-313 (574)
76 1rkb_A Protein AD-004, protein 97.0 0.00022 9.6E-09 42.8 2.3 22 25-46 5-26 (173)
77 1kag_A SKI, shikimate kinase I 96.9 0.00032 1.4E-08 41.9 2.6 34 23-59 3-36 (173)
78 1zp6_A Hypothetical protein AT 96.9 0.0005 2.2E-08 40.8 3.6 32 25-59 10-41 (191)
79 2gk6_A Regulator of nonsense t 96.9 0.0019 8.6E-08 37.7 6.1 28 23-50 194-222 (624)
80 2ga8_A Hypothetical 39.9 kDa p 96.9 0.0011 5E-08 39.0 4.9 42 4-46 2-46 (359)
81 2pez_A Bifunctional 3'-phospho 96.9 0.00056 2.5E-08 40.6 3.3 23 25-47 6-28 (179)
82 1e6c_A Shikimate kinase; phosp 96.9 0.00069 3.1E-08 40.1 3.7 24 24-47 2-25 (173)
83 1ltq_A Polynucleotide kinase; 96.8 0.003 1.3E-07 36.6 6.8 91 26-122 4-121 (301)
84 1yj5_A 5' polynucleotide kinas 96.8 0.0018 8.1E-08 37.8 5.7 93 26-125 227-322 (383)
85 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0029 1.3E-07 36.7 6.5 80 27-107 7-101 (260)
86 2a5y_B CED-4; apoptosis; HET: 96.8 0.0033 1.5E-07 36.5 6.6 46 2-47 129-175 (549)
87 1via_A Shikimate kinase; struc 96.7 0.00054 2.4E-08 40.6 2.3 34 23-59 3-36 (175)
88 2r2a_A Uncharacterized protein 96.6 0.00089 4E-08 39.5 3.0 105 25-136 6-146 (199)
89 2pt5_A Shikimate kinase, SK; a 96.6 0.00082 3.7E-08 39.7 2.5 31 26-59 2-32 (168)
90 1w36_D RECD, exodeoxyribonucle 96.6 0.016 7.2E-07 32.7 9.1 22 21-42 161-182 (608)
91 1ly1_A Polynucleotide kinase; 96.6 0.025 1.1E-06 31.7 9.9 92 27-123 5-122 (181)
92 1zuh_A Shikimate kinase; alpha 96.5 0.00093 4.1E-08 39.4 2.5 32 25-59 8-39 (168)
93 1y63_A LMAJ004144AAA protein; 96.5 0.0014 6.4E-08 38.4 3.4 24 23-46 9-32 (184)
94 1qhx_A CPT, protein (chloramph 96.4 0.0018 7.9E-08 37.9 3.5 25 23-47 2-26 (178)
95 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0036 1.6E-07 36.2 4.9 91 11-105 158-266 (330)
96 2yvu_A Probable adenylyl-sulfa 96.4 0.002 9E-08 37.6 3.5 24 24-47 13-36 (186)
97 2bdt_A BH3686; alpha-beta prot 96.4 0.0017 7.5E-08 38.0 3.0 22 26-47 4-25 (189)
98 2wjy_A Regulator of nonsense t 96.3 0.0081 3.6E-07 34.3 6.1 21 24-44 371-391 (800)
99 2iyv_A Shikimate kinase, SK; t 96.2 0.002 9E-08 37.6 2.8 32 25-59 3-34 (184)
100 1ye8_A Protein THEP1, hypothet 96.2 0.0024 1.1E-07 37.1 3.1 22 25-46 1-22 (178)
101 1m7g_A Adenylylsulfate kinase; 96.2 0.0041 1.8E-07 35.9 4.2 81 21-101 22-121 (211)
102 2bwj_A Adenylate kinase 5; pho 96.2 0.0031 1.4E-07 36.5 3.6 33 10-46 2-34 (199)
103 3a00_A Guanylate kinase, GMP k 96.2 0.0027 1.2E-07 36.9 3.2 23 25-47 2-24 (186)
104 1qf9_A UMP/CMP kinase, protein 96.1 0.0032 1.4E-07 36.5 3.4 23 24-46 4-28 (194)
105 3llm_A ATP-dependent RNA helic 96.1 0.031 1.4E-06 31.2 8.5 33 15-47 67-100 (235)
106 2vli_A Antibiotic resistance p 96.1 0.0021 9.4E-08 37.5 2.2 25 24-48 4-29 (183)
107 2gza_A Type IV secretion syste 96.0 0.0049 2.2E-07 35.5 4.0 88 13-104 164-277 (361)
108 3c8u_A Fructokinase; YP_612366 95.9 0.012 5.2E-07 33.5 5.6 34 16-49 11-47 (208)
109 2rhm_A Putative kinase; ZP_007 95.9 0.004 1.8E-07 36.0 3.2 22 26-47 7-28 (193)
110 1gvn_B Zeta; postsegregational 95.9 0.0012 5.3E-08 38.8 0.4 48 10-60 13-66 (287)
111 2cdn_A Adenylate kinase; phosp 95.9 0.0048 2.1E-07 35.5 3.4 22 25-46 21-42 (201)
112 3lw7_A Adenylate kinase relate 95.9 0.0048 2.1E-07 35.6 3.3 20 27-46 4-23 (179)
113 3kb2_A SPBC2 prophage-derived 95.8 0.0048 2.1E-07 35.5 3.3 28 27-57 4-31 (173)
114 2gks_A Bifunctional SAT/APS ki 95.8 0.0061 2.7E-07 35.0 3.7 77 24-100 372-466 (546)
115 1rz3_A Hypothetical protein rb 95.8 0.011 4.8E-07 33.7 4.9 37 11-48 8-46 (201)
116 1zak_A Adenylate kinase; ATP:A 95.8 0.0056 2.5E-07 35.2 3.4 24 23-46 4-27 (222)
117 3cm0_A Adenylate kinase; ATP-b 95.8 0.0039 1.7E-07 36.0 2.6 24 23-46 3-26 (186)
118 1ukz_A Uridylate kinase; trans 95.8 0.0048 2.1E-07 35.5 3.0 25 22-46 12-37 (203)
119 3be4_A Adenylate kinase; malar 95.7 0.0059 2.6E-07 35.1 3.4 23 24-46 5-27 (217)
120 1knq_A Gluconate kinase; ALFA/ 95.7 0.006 2.7E-07 35.0 3.3 21 27-47 11-31 (175)
121 2c95_A Adenylate kinase 1; AP4 95.7 0.0051 2.3E-07 35.4 2.8 21 26-46 11-31 (196)
122 3b60_A Lipid A export ATP-bind 95.6 0.079 3.5E-06 29.0 8.9 25 24-48 369-393 (582)
123 3fb4_A Adenylate kinase; psych 95.6 0.006 2.7E-07 35.0 3.1 22 25-46 1-22 (216)
124 2rgx_A Adenylate kinase; trans 95.6 0.0065 2.9E-07 34.8 3.3 21 26-46 2-22 (206)
125 1lvg_A Guanylate kinase, GMP k 95.6 0.0079 3.5E-07 34.4 3.5 25 23-47 3-27 (198)
126 1tev_A UMP-CMP kinase; ploop, 95.6 0.0073 3.3E-07 34.6 3.3 21 26-46 5-25 (196)
127 3ch4_B Pmkase, phosphomevalona 95.5 0.0072 3.2E-07 34.6 3.2 24 23-46 7-33 (202)
128 3gmt_A Adenylate kinase; ssgci 95.5 0.0074 3.3E-07 34.5 3.1 24 23-46 7-30 (230)
129 1zu4_A FTSY; GTPase, signal re 95.5 0.1 4.7E-06 28.4 8.9 44 27-71 108-152 (320)
130 1aky_A Adenylate kinase; ATP:A 95.4 0.0087 3.9E-07 34.2 3.3 24 23-46 3-26 (220)
131 2z0h_A DTMP kinase, thymidylat 95.4 0.0086 3.8E-07 34.2 3.3 21 27-47 3-23 (197)
132 3b85_A Phosphate starvation-in 95.4 0.0086 3.8E-07 34.2 3.2 23 21-43 19-41 (208)
133 2bbw_A Adenylate kinase 4, AK4 95.4 0.0096 4.3E-07 33.9 3.3 27 19-45 22-48 (246)
134 2oap_1 GSPE-2, type II secreti 95.3 0.019 8.6E-07 32.3 4.8 91 7-104 246-358 (511)
135 1kht_A Adenylate kinase; phosp 95.3 0.065 2.9E-06 29.5 7.5 24 24-47 3-26 (192)
136 2f1r_A Molybdopterin-guanine d 95.3 0.0035 1.5E-07 36.3 1.0 22 26-47 4-25 (171)
137 3dl0_A Adenylate kinase; phosp 95.3 0.0091 4.1E-07 34.1 3.1 22 25-46 1-22 (216)
138 1e4v_A Adenylate kinase; trans 95.3 0.0098 4.3E-07 33.9 3.2 22 25-46 1-22 (214)
139 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.038 1.7E-06 30.7 6.2 38 13-50 127-164 (460)
140 3ld9_A DTMP kinase, thymidylat 95.3 0.014 6.4E-07 33.0 4.0 27 21-47 14-44 (223)
141 1tf7_A KAIC; homohexamer, hexa 95.3 0.091 4.1E-06 28.7 8.1 19 24-42 39-57 (525)
142 2qt1_A Nicotinamide riboside k 95.1 0.011 4.7E-07 33.7 3.0 26 22-47 17-44 (207)
143 3cr8_A Sulfate adenylyltranfer 95.1 0.0061 2.7E-07 35.0 1.7 38 10-47 355-392 (552)
144 1uj2_A Uridine-cytidine kinase 95.1 0.012 5.3E-07 33.4 3.1 26 22-47 18-45 (252)
145 1ak2_A Adenylate kinase isoenz 95.1 0.014 6.1E-07 33.1 3.4 25 22-46 14-38 (233)
146 1u94_A RECA protein, recombina 95.1 0.079 3.5E-06 29.0 7.3 68 24-91 63-156 (356)
147 1zd8_A GTP:AMP phosphotransfer 95.0 0.012 5.5E-07 33.3 3.0 25 22-46 5-29 (227)
148 1uf9_A TT1252 protein; P-loop, 95.0 0.016 7E-07 32.8 3.6 25 22-46 4-30 (203)
149 1m8p_A Sulfate adenylyltransfe 94.9 0.0087 3.9E-07 34.2 2.1 109 21-133 393-520 (573)
150 2px0_A Flagellar biosynthesis 94.7 0.045 2E-06 30.3 5.3 100 26-125 107-234 (296)
151 1x6v_B Bifunctional 3'-phospho 94.7 0.022 9.7E-07 32.0 3.6 21 26-46 54-74 (630)
152 2w0m_A SSO2452; RECA, SSPF, un 94.6 0.033 1.5E-06 31.1 4.4 38 23-60 22-59 (235)
153 1tf7_A KAIC; homohexamer, hexa 94.5 0.035 1.6E-06 30.9 4.4 38 23-60 280-317 (525)
154 2qag_B Septin-6, protein NEDD5 94.5 0.014 6.1E-07 33.1 2.3 33 13-45 28-63 (427)
155 2jeo_A Uridine-cytidine kinase 94.5 0.024 1E-06 31.8 3.4 25 23-47 22-48 (245)
156 2zr9_A Protein RECA, recombina 94.4 0.1 4.7E-06 28.4 6.6 67 24-90 61-153 (349)
157 2v9p_A Replication protein E1; 94.4 0.048 2.1E-06 30.2 4.8 37 10-47 113-149 (305)
158 3fdi_A Uncharacterized protein 94.4 0.023 1E-06 31.9 3.1 23 25-47 7-29 (201)
159 3dm5_A SRP54, signal recogniti 94.3 0.24 1.1E-05 26.5 9.3 44 27-71 103-147 (443)
160 2qor_A Guanylate kinase; phosp 94.3 0.023 1E-06 31.9 3.1 24 24-47 12-35 (204)
161 2if2_A Dephospho-COA kinase; a 94.3 0.025 1.1E-06 31.7 3.2 22 26-47 3-24 (204)
162 1p9r_A General secretion pathw 94.3 0.099 4.4E-06 28.5 6.2 52 4-57 149-200 (418)
163 3cio_A ETK, tyrosine-protein k 94.2 0.074 3.3E-06 29.2 5.5 55 8-62 86-143 (299)
164 1znw_A Guanylate kinase, GMP k 94.2 0.029 1.3E-06 31.4 3.4 28 21-48 17-44 (207)
165 2vp4_A Deoxynucleoside kinase; 94.2 0.014 6.2E-07 33.1 1.7 36 13-48 7-44 (230)
166 2dpy_A FLII, flagellum-specifi 94.1 0.2 8.8E-06 26.9 7.5 109 24-136 157-289 (438)
167 1sq5_A Pantothenate kinase; P- 94.1 0.23 1E-05 26.5 7.8 41 24-64 78-124 (308)
168 2i1q_A DNA repair and recombin 94.1 0.16 7.1E-06 27.4 7.0 22 25-46 99-120 (322)
169 1xp8_A RECA protein, recombina 94.1 0.099 4.4E-06 28.5 5.9 66 25-90 75-166 (366)
170 1z6g_A Guanylate kinase; struc 94.1 0.029 1.3E-06 31.4 3.1 25 23-47 22-46 (218)
171 2jaq_A Deoxyguanosine kinase; 94.1 0.033 1.4E-06 31.1 3.4 23 25-47 1-23 (205)
172 2eyq_A TRCF, transcription-rep 94.0 0.27 1.2E-05 26.1 12.5 22 22-43 622-643 (1151)
173 3hdt_A Putative kinase; struct 94.0 0.03 1.3E-06 31.3 3.1 21 26-46 16-36 (223)
174 2og2_A Putative signal recogni 93.8 0.31 1.4E-05 25.8 8.8 43 27-70 160-203 (359)
175 1q3t_A Cytidylate kinase; nucl 93.7 0.034 1.5E-06 31.0 3.0 23 24-46 16-38 (236)
176 2r9v_A ATP synthase subunit al 93.7 0.18 8.1E-06 27.1 6.7 110 24-137 175-310 (515)
177 2dr3_A UPF0273 protein PH0284; 93.7 0.065 2.9E-06 29.5 4.4 24 23-46 22-45 (247)
178 1kgd_A CASK, peripheral plasma 93.6 0.043 1.9E-06 30.4 3.4 25 22-46 3-27 (180)
179 1vma_A Cell division protein F 93.6 0.33 1.5E-05 25.7 8.9 39 26-65 106-145 (306)
180 3e70_C DPA, signal recognition 93.6 0.33 1.5E-05 25.7 8.1 22 27-48 132-154 (328)
181 2zj8_A DNA helicase, putative 93.6 0.19 8.3E-06 27.0 6.6 22 22-43 37-58 (720)
182 1pzn_A RAD51, DNA repair and r 93.6 0.12 5.5E-06 28.0 5.6 38 25-62 132-175 (349)
183 2fz4_A DNA repair protein RAD2 93.6 0.23 1E-05 26.6 7.0 87 23-115 107-228 (237)
184 1htw_A HI0065; nucleotide-bind 93.5 0.1 4.6E-06 28.4 5.1 84 8-91 12-121 (158)
185 2h92_A Cytidylate kinase; ross 93.4 0.042 1.9E-06 30.5 3.0 21 25-45 4-24 (219)
186 1nks_A Adenylate kinase; therm 93.4 0.055 2.4E-06 29.9 3.6 20 27-46 4-23 (194)
187 3b9q_A Chloroplast SRP recepto 93.3 0.36 1.6E-05 25.5 8.3 22 27-48 103-125 (302)
188 1g8f_A Sulfate adenylyltransfe 93.3 0.15 6.7E-06 27.5 5.8 62 21-83 392-457 (511)
189 2ehv_A Hypothetical protein PH 93.3 0.11 5E-06 28.2 5.0 22 23-44 29-50 (251)
190 2eyu_A Twitching motility prot 93.3 0.065 2.9E-06 29.5 3.8 24 22-45 23-46 (261)
191 1dek_A Deoxynucleoside monopho 93.2 0.046 2.1E-06 30.3 3.0 20 27-46 4-23 (241)
192 2qag_C Septin-7; cell cycle, c 93.1 0.049 2.2E-06 30.1 3.0 21 25-45 32-52 (418)
193 3bor_A Human initiation factor 93.1 0.39 1.7E-05 25.3 8.3 98 19-116 62-215 (237)
194 2cbz_A Multidrug resistance-as 93.1 0.051 2.2E-06 30.1 3.0 24 23-46 30-53 (237)
195 1lw7_A Transcriptional regulat 93.1 0.045 2E-06 30.3 2.7 22 26-47 172-193 (365)
196 3foz_A TRNA delta(2)-isopenten 93.1 0.048 2.2E-06 30.2 2.9 27 20-46 4-32 (316)
197 1odf_A YGR205W, hypothetical 3 93.1 0.16 7.2E-06 27.3 5.6 34 13-46 16-53 (290)
198 1e9r_A Conjugal transfer prote 93.0 0.044 2E-06 30.4 2.7 38 24-61 53-90 (437)
199 1cke_A CK, MSSA, protein (cyti 93.0 0.053 2.3E-06 30.0 3.0 22 25-46 5-27 (227)
200 3i4l_A A-type ATP synthase cat 93.0 0.048 2.1E-06 30.2 2.8 111 24-137 227-367 (588)
201 3kl4_A SRP54, signal recogniti 92.9 0.42 1.9E-05 25.1 7.7 43 27-70 100-143 (433)
202 2va8_A SSO2462, SKI2-type heli 92.9 0.4 1.8E-05 25.2 7.4 22 22-43 44-65 (715)
203 2ewv_A Twitching motility prot 92.9 0.058 2.6E-06 29.7 3.1 23 22-44 134-156 (372)
204 2cvh_A DNA repair and recombin 92.8 0.12 5.4E-06 28.0 4.6 23 23-45 19-41 (220)
205 3lda_A DNA repair protein RAD5 92.8 0.21 9.3E-06 26.8 5.8 40 23-62 177-222 (400)
206 3kx2_B PRE-mRNA-splicing facto 92.7 0.048 2.1E-06 30.2 2.4 32 16-47 101-133 (767)
207 1tue_A Replication protein E1; 92.7 0.098 4.3E-06 28.5 4.0 115 11-139 46-176 (212)
208 2j37_W Signal recognition part 92.7 0.46 2.1E-05 24.9 8.2 24 27-50 104-128 (504)
209 2ff7_A Alpha-hemolysin translo 92.6 0.064 2.8E-06 29.5 3.0 24 23-46 34-57 (247)
210 1u0j_A DNA replication protein 92.6 0.14 6.2E-06 27.7 4.7 105 25-140 105-228 (267)
211 3b5x_A Lipid A export ATP-bind 92.6 0.12 5.2E-06 28.1 4.3 28 22-49 367-394 (582)
212 1j8m_F SRP54, signal recogniti 92.5 0.49 2.2E-05 24.8 7.8 22 27-48 101-123 (297)
213 1ls1_A Signal recognition part 92.5 0.49 2.2E-05 24.8 8.8 18 27-44 101-118 (295)
214 2ixe_A Antigen peptide transpo 92.5 0.07 3.1E-06 29.3 3.0 24 23-46 44-67 (271)
215 1rj9_A FTSY, signal recognitio 92.5 0.49 2.2E-05 24.7 8.0 68 26-93 104-201 (304)
216 2ghi_A Transport protein; mult 92.4 0.07 3.1E-06 29.3 3.0 24 23-46 45-68 (260)
217 1l2t_A Hypothetical ABC transp 92.3 0.074 3.3E-06 29.2 3.0 42 77-119 164-208 (235)
218 1fzq_A ADP-ribosylation factor 92.3 0.14 6.1E-06 27.7 4.4 105 13-117 5-129 (181)
219 3bh0_A DNAB-like replicative h 92.2 0.2 9.1E-06 26.8 5.1 36 25-60 69-104 (315)
220 1jjv_A Dephospho-COA kinase; P 92.1 0.088 3.9E-06 28.8 3.2 19 27-45 5-23 (206)
221 2ffh_A Protein (FFH); SRP54, s 92.0 0.56 2.5E-05 24.5 9.5 43 27-70 101-144 (425)
222 1tq4_A IIGP1, interferon-induc 92.0 0.18 7.9E-06 27.1 4.6 37 9-45 54-90 (413)
223 1b0u_A Histidine permease; ABC 92.0 0.086 3.8E-06 28.8 3.0 23 24-46 32-54 (262)
224 3fmo_B ATP-dependent RNA helic 91.9 0.57 2.5E-05 24.4 8.8 40 78-117 237-279 (300)
225 1mv5_A LMRA, multidrug resista 91.9 0.089 4E-06 28.7 3.0 23 24-46 28-50 (243)
226 3def_A T7I23.11 protein; chlor 91.8 0.16 7E-06 27.4 4.3 38 9-46 21-58 (262)
227 1vht_A Dephospho-COA kinase; s 91.8 0.11 4.7E-06 28.3 3.3 20 27-46 7-26 (218)
228 2pbr_A DTMP kinase, thymidylat 91.8 0.11 5.1E-06 28.1 3.5 21 27-47 3-23 (195)
229 2j28_9 Signal recognition part 91.8 0.41 1.8E-05 25.2 6.3 25 26-50 101-126 (430)
230 3a8t_A Adenylate isopentenyltr 91.6 0.095 4.2E-06 28.6 2.9 22 25-46 41-62 (339)
231 3d3q_A TRNA delta(2)-isopenten 91.6 0.087 3.9E-06 28.8 2.7 23 24-46 5-29 (340)
232 1n0w_A DNA repair protein RAD5 91.6 0.1 4.5E-06 28.4 3.0 23 22-44 22-44 (243)
233 2plr_A DTMP kinase, probable t 91.5 0.12 5.6E-06 27.9 3.5 23 27-49 7-29 (213)
234 1sky_E F1-ATPase, F1-ATP synth 91.5 0.64 2.9E-05 24.1 8.1 114 24-137 151-288 (473)
235 2qy9_A Cell division protein F 91.4 0.65 2.9E-05 24.1 9.6 66 27-93 102-198 (309)
236 3gqb_A V-type ATP synthase alp 91.3 0.48 2.1E-05 24.8 6.3 111 24-137 221-361 (578)
237 1yqt_A RNAse L inhibitor; ATP- 91.3 0.11 5E-06 28.2 3.0 21 25-45 48-68 (538)
238 3bs4_A Uncharacterized protein 91.2 0.13 5.9E-06 27.8 3.3 47 22-69 19-65 (260)
239 2pcj_A ABC transporter, lipopr 91.2 0.11 4.7E-06 28.3 2.8 23 24-46 30-52 (224)
240 2f6r_A COA synthase, bifunctio 91.2 0.13 5.6E-06 27.9 3.2 22 27-48 78-99 (281)
241 2ck3_D ATP synthase beta chain 91.2 0.69 3.1E-05 23.9 8.8 114 24-137 153-296 (482)
242 1a7j_A Phosphoribulokinase; tr 91.2 0.22 9.9E-06 26.6 4.4 76 25-100 5-87 (290)
243 3dpu_A RAB family protein; roc 91.2 0.69 3.1E-05 23.9 7.3 22 25-46 42-63 (535)
244 3ice_A Transcription terminati 91.1 0.7 3.1E-05 23.9 7.5 77 15-93 163-242 (422)
245 1xjc_A MOBB protein homolog; s 91.1 0.17 7.6E-06 27.2 3.8 37 24-60 3-40 (169)
246 1v5w_A DMC1, meiotic recombina 91.0 0.12 5.4E-06 28.0 3.0 22 24-45 122-143 (343)
247 2ccj_A DTMP kinase, thymidylat 90.8 0.15 6.6E-06 27.6 3.3 21 27-47 5-25 (205)
248 3bfv_A CAPA1, CAPB2, membrane 90.8 0.49 2.2E-05 24.8 5.9 56 8-63 64-122 (271)
249 1e69_A Chromosome segregation 90.7 0.25 1.1E-05 26.4 4.3 41 76-116 241-282 (322)
250 1fx0_A ATP synthase alpha chai 90.6 0.59 2.6E-05 24.3 6.2 86 24-112 163-262 (507)
251 2get_A Pantothenate kinase; ho 90.6 0.73 3.2E-05 23.8 6.6 25 24-48 88-114 (312)
252 2ze6_A Isopentenyl transferase 90.5 0.14 6.1E-06 27.7 2.9 20 27-46 4-23 (253)
253 3iqw_A Tail-anchored protein t 90.5 0.24 1.1E-05 26.4 4.1 39 24-62 16-54 (334)
254 3dhw_C Methionine import ATP-b 90.5 0.14 6.1E-06 27.7 2.9 23 24-46 31-53 (343)
255 1p6x_A Thymidine kinase; P-loo 90.5 0.22 9.6E-06 26.7 3.8 24 26-49 9-32 (334)
256 1g6h_A High-affinity branched- 90.4 0.15 6.7E-06 27.5 3.0 24 23-46 32-55 (257)
257 1nn5_A Similar to deoxythymidy 90.4 0.21 9.5E-06 26.7 3.8 24 24-47 9-32 (215)
258 3crm_A TRNA delta(2)-isopenten 90.3 0.13 5.6E-06 27.9 2.5 20 27-46 8-27 (323)
259 2j41_A Guanylate kinase; GMP, 90.3 0.21 9.3E-06 26.7 3.6 25 24-48 6-30 (207)
260 2pjz_A Hypothetical protein ST 90.2 0.16 7.1E-06 27.4 3.0 24 24-47 30-53 (263)
261 2onk_A Molybdate/tungstate ABC 90.1 0.16 7.3E-06 27.3 3.0 23 25-47 25-47 (240)
262 2woo_A ATPase GET3; tail-ancho 90.1 0.33 1.5E-05 25.7 4.6 38 25-62 20-57 (329)
263 2pze_A Cystic fibrosis transme 90.1 0.17 7.5E-06 27.3 3.0 24 23-46 33-56 (229)
264 2iw3_A Elongation factor 3A; a 90.1 0.17 7.6E-06 27.2 3.0 28 77-104 567-595 (986)
265 3bgw_A DNAB-like replicative h 90.1 0.43 1.9E-05 25.1 5.1 35 25-59 198-232 (444)
266 3euj_A Chromosome partition pr 90.0 0.19 8.3E-06 27.0 3.2 22 24-45 29-50 (483)
267 1s96_A Guanylate kinase, GMP k 90.0 0.18 8.1E-06 27.1 3.1 26 24-49 16-41 (219)
268 2wwf_A Thymidilate kinase, put 89.9 0.19 8.4E-06 27.0 3.1 23 26-48 12-34 (212)
269 3ber_A Probable ATP-dependent 89.8 0.92 4.1E-05 23.3 9.9 98 19-116 75-228 (249)
270 2z43_A DNA repair and recombin 89.7 0.17 7.7E-06 27.2 2.9 24 24-47 107-130 (324)
271 1yrb_A ATP(GTP)binding protein 89.7 0.38 1.7E-05 25.4 4.6 23 25-47 14-37 (262)
272 2yz2_A Putative ABC transporte 89.7 0.19 8.4E-06 27.0 3.0 23 24-46 33-55 (266)
273 1pjr_A PCRA; DNA repair, DNA r 89.6 0.43 1.9E-05 25.1 4.8 31 16-46 16-48 (724)
274 3lxw_A GTPase IMAP family memb 89.6 0.14 6.3E-06 27.7 2.3 31 15-45 12-42 (247)
275 2is6_A DNA helicase II; hydrol 89.6 0.3 1.3E-05 25.9 4.0 26 15-40 13-38 (680)
276 1lkx_A Myosin IE heavy chain; 89.6 0.47 2.1E-05 24.8 5.0 23 22-44 92-114 (697)
277 3exa_A TRNA delta(2)-isopenten 89.5 0.17 7.5E-06 27.3 2.7 21 26-46 5-25 (322)
278 1sgw_A Putative ABC transporte 89.4 0.2 9E-06 26.8 3.0 24 23-46 34-57 (214)
279 2grj_A Dephospho-COA kinase; T 89.4 0.21 9.2E-06 26.8 3.0 22 24-45 10-33 (192)
280 1s2m_A Putative ATP-dependent 89.3 0.76 3.4E-05 23.7 5.9 33 21-53 55-89 (400)
281 1zj6_A ADP-ribosylation factor 89.2 0.35 1.6E-05 25.5 4.1 34 13-46 4-38 (187)
282 3gfo_A Cobalt import ATP-bindi 89.1 0.22 9.7E-06 26.6 3.0 23 24-46 34-56 (275)
283 2olj_A Amino acid ABC transpor 89.1 0.22 9.7E-06 26.6 3.0 23 24-46 50-72 (263)
284 3gd7_A Fusion complex of cysti 89.1 0.21 9.3E-06 26.8 2.9 25 23-47 46-70 (390)
285 1w1w_A Structural maintenance 89.0 0.22 9.8E-06 26.6 3.0 20 27-46 29-48 (430)
286 1knx_A Probable HPR(Ser) kinas 88.9 0.17 7.4E-06 27.3 2.3 22 25-46 148-169 (312)
287 2nq2_C Hypothetical ABC transp 88.9 0.23 1E-05 26.5 3.0 24 23-46 30-53 (253)
288 2zu0_C Probable ATP-dependent 88.8 0.24 1E-05 26.5 3.0 24 23-46 45-68 (267)
289 4tmk_A Protein (thymidylate ki 88.8 0.24 1.1E-05 26.4 3.1 23 25-47 4-26 (213)
290 1v43_A Sugar-binding transport 88.7 0.24 1.1E-05 26.4 3.0 23 24-46 37-59 (372)
291 2bbs_A Cystic fibrosis transme 88.7 0.23 1E-05 26.5 2.9 23 24-46 64-86 (290)
292 2hf9_A Probable hydrogenase ni 88.6 0.57 2.5E-05 24.4 4.8 36 11-46 23-60 (226)
293 2v26_A Myosin VI; calmodulin-b 88.6 0.61 2.7E-05 24.2 5.0 23 22-44 138-160 (784)
294 2qi9_C Vitamin B12 import ATP- 88.5 0.26 1.1E-05 26.3 3.0 24 24-47 26-49 (249)
295 3eph_A TRNA isopentenyltransfe 88.5 0.16 7.3E-06 27.3 2.0 21 26-46 4-24 (409)
296 3fvq_A Fe(3+) IONS import ATP- 88.3 0.25 1.1E-05 26.3 2.9 24 24-47 30-53 (359)
297 3lnc_A Guanylate kinase, GMP k 88.3 0.15 6.7E-06 27.5 1.7 22 25-46 28-49 (231)
298 1of1_A Thymidine kinase; trans 88.2 0.29 1.3E-05 26.0 3.1 69 27-97 52-129 (376)
299 2p67_A LAO/AO transport system 88.2 0.47 2.1E-05 24.9 4.2 20 26-45 58-77 (341)
300 2vl7_A XPD; helicase, unknown 88.2 0.49 2.2E-05 24.8 4.3 33 8-44 14-46 (540)
301 2qmh_A HPR kinase/phosphorylas 88.1 0.26 1.2E-05 26.2 2.9 24 24-47 34-57 (205)
302 2awn_A Maltose/maltodextrin im 88.1 0.28 1.3E-05 26.0 3.0 23 24-46 29-51 (381)
303 2ocp_A DGK, deoxyguanosine kin 88.0 0.31 1.4E-05 25.8 3.2 22 27-48 5-26 (241)
304 2hyd_A ABC transporter homolog 88.0 0.15 6.6E-06 27.5 1.5 27 23-49 366-392 (578)
305 1uaa_A REP helicase, protein ( 87.9 0.33 1.5E-05 25.7 3.3 25 16-40 7-31 (673)
306 3lv8_A DTMP kinase, thymidylat 87.9 0.37 1.6E-05 25.4 3.5 25 23-47 26-50 (236)
307 2v54_A DTMP kinase, thymidylat 87.8 0.58 2.6E-05 24.4 4.5 25 25-49 5-29 (204)
308 3kqn_A Serine protease/ntpase/ 87.8 1.2 5.5E-05 22.6 6.1 38 77-114 96-135 (437)
309 1ii8_A RAD50 ABC-ATPase; MRE11 87.8 0.32 1.4E-05 25.7 3.2 20 27-46 26-45 (195)
310 1nlf_A Regulatory protein REPA 87.6 1.3 5.9E-05 22.4 7.5 22 24-45 30-51 (279)
311 1br2_A Myosin; muscle protein; 87.6 0.77 3.4E-05 23.7 5.0 23 22-44 167-189 (791)
312 1cr0_A DNA primase/helicase; R 87.6 1 4.6E-05 23.0 5.6 35 25-59 36-71 (296)
313 1gm5_A RECG; helicase, replica 87.5 1.3 6E-05 22.4 8.5 22 22-43 387-408 (780)
314 2d2e_A SUFC protein; ABC-ATPas 87.4 0.33 1.5E-05 25.6 3.0 23 24-46 29-51 (250)
315 3tmk_A Thymidylate kinase; pho 87.4 0.34 1.5E-05 25.6 3.1 23 25-47 6-28 (216)
316 2wv9_A Flavivirin protease NS2 87.3 1.1 4.7E-05 22.9 5.6 41 77-117 333-374 (673)
317 1g29_1 MALK, maltose transport 87.3 0.34 1.5E-05 25.6 3.0 23 24-46 29-51 (372)
318 2it1_A 362AA long hypothetical 87.3 0.34 1.5E-05 25.6 3.0 24 24-47 29-52 (362)
319 1z2a_A RAS-related protein RAB 87.3 0.57 2.5E-05 24.4 4.1 94 24-117 5-121 (168)
320 3g5u_A MCG1178, multidrug resi 87.1 0.39 1.7E-05 25.3 3.3 21 25-45 1060-1080(1284)
321 2yyz_A Sugar ABC transporter, 87.1 0.36 1.6E-05 25.5 3.0 23 24-46 29-51 (359)
322 2ihy_A ABC transporter, ATP-bi 87.0 0.35 1.6E-05 25.5 3.0 23 24-46 47-69 (279)
323 1w7j_A Myosin VA; motor protei 87.0 0.87 3.9E-05 23.4 5.0 23 22-44 154-176 (795)
324 3h1t_A Type I site-specific re 87.0 0.86 3.8E-05 23.4 5.0 37 8-44 182-218 (590)
325 2qag_A Septin-2, protein NEDD5 87.0 0.32 1.4E-05 25.8 2.7 21 24-44 37-57 (361)
326 2mys_A Myosin; muscle protein, 86.9 0.8 3.6E-05 23.6 4.8 23 22-44 170-192 (843)
327 1f2t_A RAD50 ABC-ATPase; DNA d 86.9 0.38 1.7E-05 25.3 3.1 20 27-46 26-45 (149)
328 2j69_A Bacterial dynamin-like 86.8 0.81 3.6E-05 23.6 4.7 39 7-45 52-90 (695)
329 2obl_A ESCN; ATPase, hydrolase 86.7 1.5 6.7E-05 22.1 8.3 109 24-136 71-202 (347)
330 2ck3_A ATP synthase alpha chai 86.6 1.5 6.8E-05 22.1 7.4 113 24-136 162-304 (510)
331 2qnr_A Septin-2, protein NEDD5 86.5 0.29 1.3E-05 25.9 2.4 20 25-44 19-38 (301)
332 1xew_X SMC protein; structural 86.5 0.32 1.4E-05 25.8 2.5 23 26-48 28-50 (182)
333 2qm8_A GTPase/ATPase; G protei 86.5 0.73 3.3E-05 23.8 4.4 19 26-44 57-75 (337)
334 1z47_A CYSA, putative ABC-tran 86.3 0.42 1.9E-05 25.1 3.0 23 24-46 41-63 (355)
335 3bk7_A ABC transporter ATP-bin 86.0 0.43 1.9E-05 25.1 3.0 21 25-45 118-138 (607)
336 1w9i_A Myosin II heavy chain; 86.0 0.42 1.9E-05 25.1 2.9 23 22-44 170-192 (770)
337 1hv8_A Putative ATP-dependent 86.0 1.4 6.4E-05 22.2 5.6 26 23-48 43-70 (367)
338 2jlq_A Serine protease subunit 85.9 1.4 6.3E-05 22.3 5.6 20 21-40 16-35 (451)
339 1kk8_A Myosin heavy chain, str 85.8 0.88 3.9E-05 23.4 4.5 23 22-44 167-189 (837)
340 1xti_A Probable ATP-dependent 85.7 1.7 7.5E-05 21.9 7.8 37 20-56 41-79 (391)
341 2v6i_A RNA helicase; membrane, 85.7 1.7 7.5E-05 21.9 5.9 39 77-116 94-134 (431)
342 1bif_A 6-phosphofructo-2-kinas 85.7 0.51 2.3E-05 24.7 3.2 22 26-47 41-62 (469)
343 1ko7_A HPR kinase/phosphatase; 85.6 0.51 2.3E-05 24.6 3.2 23 25-47 145-167 (314)
344 1h65_A Chloroplast outer envel 85.5 0.78 3.5E-05 23.7 4.1 36 11-46 26-61 (270)
345 2dfs_A Myosin-5A; myosin-V, in 85.4 0.43 1.9E-05 25.1 2.7 23 22-44 154-176 (1080)
346 2qe7_A ATP synthase subunit al 85.2 1.8 8E-05 21.7 8.0 111 24-136 162-296 (502)
347 1m2o_B GTP binding, GTP-bindin 85.1 0.47 2.1E-05 24.8 2.9 22 25-46 24-45 (190)
348 1g8x_A Myosin II heavy chain f 85.0 0.46 2.1E-05 24.9 2.7 23 22-44 170-192 (1010)
349 1q0u_A Bstdead; DEAD protein, 84.9 1.9 8.3E-05 21.6 8.5 45 78-122 152-200 (219)
350 3lxx_A GTPase IMAP family memb 84.9 0.53 2.4E-05 24.6 3.0 22 24-45 29-50 (239)
351 1p5z_B DCK, deoxycytidine kina 84.8 0.3 1.3E-05 25.9 1.7 22 26-47 26-47 (263)
352 2v3c_C SRP54, signal recogniti 84.8 0.32 1.4E-05 25.8 1.8 25 26-50 101-126 (432)
353 1gtv_A TMK, thymidylate kinase 84.6 0.23 1E-05 26.6 1.0 21 27-47 3-23 (214)
354 1ji0_A ABC transporter; ATP bi 84.6 0.56 2.5E-05 24.4 3.0 22 24-45 32-53 (240)
355 1e2k_A Thymidine kinase; trans 84.6 0.34 1.5E-05 25.6 1.9 24 27-50 7-30 (331)
356 2woj_A ATPase GET3; tail-ancho 84.5 0.78 3.5E-05 23.7 3.7 39 24-62 18-58 (354)
357 3crv_A XPD/RAD3 related DNA he 84.4 1 4.5E-05 23.1 4.3 28 8-39 10-37 (551)
358 2o5v_A DNA replication and rep 84.4 0.57 2.5E-05 24.4 3.0 20 27-46 29-48 (359)
359 3ly5_A ATP-dependent RNA helic 84.1 2 9.1E-05 21.4 9.1 25 19-43 86-110 (262)
360 1kao_A RAP2A; GTP-binding prot 84.0 0.61 2.7E-05 24.2 3.0 19 27-45 6-24 (167)
361 1ihu_A Arsenical pump-driving 84.0 0.8 3.6E-05 23.6 3.6 35 27-61 330-364 (589)
362 1osn_A Thymidine kinase, VZV-T 83.6 0.62 2.8E-05 24.2 2.9 24 27-50 15-38 (341)
363 3io3_A DEHA2D07832P; chaperone 83.6 0.98 4.3E-05 23.1 3.9 36 26-61 20-57 (348)
364 1oxx_K GLCV, glucose, ABC tran 83.5 0.28 1.3E-05 26.0 1.1 23 24-46 31-53 (353)
365 2z0m_A 337AA long hypothetical 83.4 1.2 5.3E-05 22.7 4.3 21 22-42 29-49 (337)
366 2www_A Methylmalonic aciduria 83.2 2 8.7E-05 21.5 5.4 36 26-61 76-113 (349)
367 2oxc_A Probable ATP-dependent 83.1 2.2 1E-04 21.2 10.5 24 20-43 57-80 (230)
368 2whx_A Serine protease/ntpase/ 83.1 2 8.9E-05 21.5 5.3 40 77-116 278-318 (618)
369 3d31_A Sulfate/molybdate ABC t 83.1 0.41 1.8E-05 25.2 1.8 24 24-47 26-49 (348)
370 2gf9_A RAS-related protein RAB 83.1 0.85 3.8E-05 23.5 3.4 24 21-44 11-42 (189)
371 2o52_A RAS-related protein RAB 82.8 0.68 3E-05 24.0 2.9 18 27-44 28-45 (200)
372 2gj8_A MNME, tRNA modification 82.7 0.69 3.1E-05 23.9 2.9 23 23-45 3-25 (172)
373 3con_A GTPase NRAS; structural 82.7 0.75 3.4E-05 23.8 3.0 20 26-45 23-42 (190)
374 1svi_A GTP-binding protein YSX 82.2 0.75 3.4E-05 23.7 2.9 26 20-45 18-44 (195)
375 2ged_A SR-beta, signal recogni 82.2 0.8 3.5E-05 23.6 3.0 22 25-46 49-70 (193)
376 2wkq_A NPH1-1, RAS-related C3 82.2 1.8 7.8E-05 21.8 4.8 36 10-45 141-176 (332)
377 2x2e_A Dynamin-1; nitration, h 82.0 0.39 1.7E-05 25.3 1.3 23 23-45 24-47 (341)
378 3eiq_A Eukaryotic initiation f 81.8 2.2 9.8E-05 21.2 5.2 23 20-42 73-95 (414)
379 1ek0_A Protein (GTP-binding pr 81.8 0.85 3.8E-05 23.5 3.0 21 25-45 4-25 (170)
380 1f6b_A SAR1; gtpases, N-termin 81.7 0.66 2.9E-05 24.1 2.5 22 24-45 25-46 (198)
381 2r6f_A Excinuclease ABC subuni 81.5 0.45 2E-05 25.0 1.5 15 27-41 653-667 (972)
382 2z83_A Helicase/nucleoside tri 81.4 0.69 3.1E-05 24.0 2.5 27 13-39 10-36 (459)
383 1z0j_A RAB-22, RAS-related pro 81.0 0.93 4.1E-05 23.3 3.0 21 25-45 7-27 (170)
384 2fv8_A H6, RHO-related GTP-bin 80.7 0.89 4E-05 23.4 2.8 20 26-45 27-47 (207)
385 3dkp_A Probable ATP-dependent 80.7 1.7 7.5E-05 21.9 4.3 25 19-43 61-85 (245)
386 2e87_A Hypothetical protein PH 80.5 1.8 8.1E-05 21.7 4.4 22 24-45 166-188 (357)
387 2h17_A ADP-ribosylation factor 80.0 0.82 3.6E-05 23.6 2.5 22 25-46 22-43 (181)
388 2dyk_A GTP-binding protein; GT 79.8 1.1 4.8E-05 22.9 3.0 19 27-45 4-22 (161)
389 1upt_A ARL1, ADP-ribosylation 79.8 1.1 4.9E-05 22.9 3.0 21 25-45 8-28 (171)
390 1i84_S Smooth muscle myosin he 79.7 0.51 2.3E-05 24.7 1.3 23 22-44 167-189 (1184)
391 3md0_A Arginine/ornithine tran 79.6 2 9.1E-05 21.4 4.4 20 25-44 80-99 (355)
392 1r2q_A RAS-related protein RAB 79.6 1.1 5E-05 22.8 3.0 21 26-46 8-29 (170)
393 1q57_A DNA primase/helicase; d 79.5 1.8 7.9E-05 21.8 4.0 35 25-59 243-278 (503)
394 2erx_A GTP-binding protein DI- 79.5 1.1 5E-05 22.8 3.0 20 26-45 5-25 (172)
395 1cp2_A CP2, nitrogenase iron p 79.3 1.6 7.3E-05 21.9 3.8 36 27-62 4-39 (269)
396 3llu_A RAS-related GTP-binding 79.3 1.1 4.7E-05 22.9 2.9 23 23-45 19-41 (196)
397 2b8t_A Thymidine kinase; deoxy 79.2 3.1 0.00014 20.4 8.5 87 27-116 15-127 (223)
398 3cph_A RAS-related protein SEC 79.1 1.2 5.2E-05 22.7 3.0 19 26-44 22-40 (213)
399 1u8z_A RAS-related protein RAL 79.1 1.2 5.2E-05 22.7 3.0 19 27-45 7-25 (168)
400 2pl3_A Probable ATP-dependent 79.0 2.1 9.2E-05 21.4 4.3 39 78-116 173-213 (236)
401 2i4i_A ATP-dependent RNA helic 79.0 2.1 9.2E-05 21.4 4.3 21 21-41 49-69 (417)
402 1vec_A ATP-dependent RNA helic 78.9 3.2 0.00014 20.4 6.9 98 19-116 35-188 (206)
403 2c61_A A-type ATP synthase non 78.8 3.2 0.00014 20.4 7.0 114 24-137 152-292 (469)
404 2j1l_A RHO-related GTP-binding 78.8 1.1 4.9E-05 22.8 2.8 20 26-45 36-55 (214)
405 1oix_A RAS-related protein RAB 78.8 1.1 5E-05 22.8 2.8 18 27-44 32-49 (191)
406 1wp9_A ATP-dependent RNA helic 78.8 2.1 9.4E-05 21.3 4.2 21 24-44 23-43 (494)
407 2zej_A Dardarin, leucine-rich 78.6 1.2 5.5E-05 22.6 3.0 20 25-44 3-22 (184)
408 2efe_B Small GTP-binding prote 78.5 1.2 5.5E-05 22.6 3.0 20 26-45 14-34 (181)
409 2dpx_A GTP-binding protein RAD 78.5 1.2 5.5E-05 22.6 3.0 19 27-45 10-28 (174)
410 1z0f_A RAB14, member RAS oncog 78.4 1.3 5.7E-05 22.5 3.0 19 27-45 18-36 (179)
411 1ksh_A ARF-like protein 2; sma 78.3 1.6 7.1E-05 22.0 3.5 23 24-46 18-40 (186)
412 3bbp_A RAB-6, RAS-related prot 78.2 1.2 5.3E-05 22.7 2.9 19 26-44 18-36 (211)
413 2fn4_A P23, RAS-related protei 78.2 1.2 5.3E-05 22.7 2.8 19 27-45 12-30 (181)
414 2rex_B RHO-related GTP-binding 78.1 1.3 5.8E-05 22.5 3.0 21 25-45 11-31 (197)
415 1vg8_A RAS-related protein RAB 78.1 1.3 5.8E-05 22.5 3.0 19 26-44 10-28 (207)
416 3dz8_A RAS-related protein RAB 78.1 1.2 5.4E-05 22.6 2.9 18 27-44 26-43 (191)
417 2g3y_A GTP-binding protein GEM 78.1 1.3 5.8E-05 22.5 3.0 20 26-45 39-58 (211)
418 2atv_A RERG, RAS-like estrogen 78.0 1.3 5.9E-05 22.4 3.0 24 22-45 26-49 (196)
419 1zd9_A ADP-ribosylation factor 78.0 1.3 5.9E-05 22.4 3.0 94 24-117 22-136 (188)
420 2db3_A ATP-dependent RNA helic 78.0 2.3 0.0001 21.1 4.3 25 18-42 87-111 (434)
421 2ph1_A Nucleotide-binding prot 77.9 3.4 0.00015 20.2 5.6 50 11-63 8-58 (262)
422 2iut_A DNA translocase FTSK; n 77.9 1.4 6.2E-05 22.3 3.1 36 24-60 214-254 (574)
423 2hup_A RAS-related protein RAB 77.9 1.2 5.5E-05 22.6 2.8 18 27-44 32-49 (201)
424 1qhl_A Protein (cell division 77.8 0.25 1.1E-05 26.3 -0.7 21 27-47 30-50 (227)
425 1g16_A RAS-related protein SEC 77.8 1.3 5.6E-05 22.6 2.9 19 27-45 6-24 (170)
426 3kjh_A CO dehydrogenase/acetyl 77.7 1.2 5.1E-05 22.8 2.7 36 27-62 3-38 (254)
427 2fg5_A RAB-22B, RAS-related pr 77.7 1.3 5.6E-05 22.6 2.8 22 24-45 23-44 (192)
428 1zbd_A Rabphilin-3A; G protein 77.5 1.4 6.2E-05 22.3 3.0 19 27-45 11-29 (203)
429 3cbq_A GTP-binding protein REM 77.4 1.1 5E-05 22.8 2.5 19 26-44 25-43 (195)
430 1yzq_A Small GTP binding prote 77.2 1.3 5.9E-05 22.4 2.9 21 25-45 7-27 (170)
431 1z08_A RAS-related protein RAB 77.2 1.4 6.3E-05 22.3 3.0 20 26-45 8-27 (170)
432 2bme_A RAB4A, RAS-related prot 77.1 1.4 6E-05 22.4 2.9 18 27-44 13-30 (186)
433 3bc1_A RAS-related protein RAB 77.0 1.5 6.6E-05 22.2 3.0 20 26-45 13-32 (195)
434 1nrj_B SR-beta, signal recogni 77.0 1.5 6.6E-05 22.2 3.0 24 23-46 10-34 (218)
435 2x77_A ADP-ribosylation factor 76.9 0.91 4E-05 23.3 1.9 21 24-44 22-42 (189)
436 2f9l_A RAB11B, member RAS onco 76.9 1.5 6.7E-05 22.1 3.0 19 27-45 8-26 (199)
437 1ky3_A GTP-binding protein YPT 76.7 1.5 6.7E-05 22.1 3.0 20 26-45 10-29 (182)
438 1fx0_B ATP synthase beta chain 76.7 3.7 0.00017 20.0 8.2 114 24-137 165-309 (498)
439 2cjw_A GTP-binding protein GEM 76.7 1.5 6.8E-05 22.1 3.0 19 26-44 8-26 (192)
440 2ius_A DNA translocase FTSK; n 76.6 1.6 7.1E-05 22.0 3.1 35 25-60 168-207 (512)
441 3clv_A RAB5 protein, putative; 76.3 1.6 7E-05 22.0 3.0 20 26-45 9-28 (208)
442 1r8s_A ADP-ribosylation factor 76.2 1.6 7.1E-05 22.0 3.0 20 26-45 2-21 (164)
443 2fu5_C RAS-related protein RAB 76.1 0.83 3.7E-05 23.5 1.5 19 27-45 11-29 (183)
444 2a5j_A RAS-related protein RAB 76.0 1.6 7.3E-05 21.9 3.0 19 26-44 23-41 (191)
445 2nzj_A GTP-binding protein REM 75.7 1.7 7.4E-05 21.9 3.0 18 27-44 7-24 (175)
446 1gwn_A RHO-related GTP-binding 75.7 1.6 6.9E-05 22.1 2.9 21 26-46 30-50 (205)
447 2fh5_B SR-beta, signal recogni 75.7 1.7 7.7E-05 21.8 3.1 23 24-46 7-29 (214)
448 2a9k_A RAS-related protein RAL 75.6 1.7 7.6E-05 21.8 3.0 19 27-45 21-39 (187)
449 2zpa_A Uncharacterized protein 75.6 4 0.00018 19.9 8.5 95 11-116 181-289 (671)
450 1vpl_A ABC transporter, ATP-bi 75.5 1.7 7.5E-05 21.9 3.0 22 25-46 42-63 (256)
451 2b6h_A ADP-ribosylation factor 75.4 1.6 7.1E-05 22.0 2.9 22 23-44 28-49 (192)
452 2h57_A ADP-ribosylation factor 75.4 1.3 5.6E-05 22.6 2.3 20 25-44 22-41 (190)
453 1fuu_A Yeast initiation factor 75.0 2.5 0.00011 21.0 3.8 21 22-42 56-76 (394)
454 1z06_A RAS-related protein RAB 74.8 1.8 8E-05 21.7 3.0 20 26-45 22-41 (189)
455 2ce2_X GTPase HRAS; signaling 74.6 4.3 0.00019 19.7 7.2 72 27-98 6-98 (166)
456 3lx5_A Ferrous iron uptake tra 74.5 1.9 8.3E-05 21.6 3.0 20 26-45 5-24 (272)
457 2bcg_Y Protein YP2, GTP-bindin 74.4 1.7 7.8E-05 21.8 2.9 19 27-45 11-29 (206)
458 2hxs_A RAB-26, RAS-related pro 74.4 1.9 8.4E-05 21.6 3.0 20 26-45 8-27 (178)
459 2cxx_A Probable GTP-binding pr 74.3 1.7 7.5E-05 21.9 2.8 20 26-45 3-22 (190)
460 1wms_A RAB-9, RAB9, RAS-relate 74.2 1.9 8.5E-05 21.6 3.0 18 27-44 10-27 (177)
461 1c1y_A RAS-related protein RAP 74.2 1.9 8.6E-05 21.6 3.0 21 26-46 5-25 (167)
462 2f7s_A C25KG, RAS-related prot 74.2 1.9 8.6E-05 21.6 3.0 19 26-44 27-45 (217)
463 2oil_A CATX-8, RAS-related pro 74.1 2 8.7E-05 21.5 3.0 18 27-44 28-45 (193)
464 3ec1_A YQEH GTPase; atnos1, at 74.1 4.4 0.00019 19.6 5.3 36 10-46 149-184 (369)
465 3cpj_B GTP-binding protein YPT 74.0 2 8.7E-05 21.5 3.0 18 27-44 16-33 (223)
466 2q3h_A RAS homolog gene family 73.9 2 8.8E-05 21.5 3.0 21 25-45 21-42 (201)
467 2wjg_A FEOB, ferrous iron tran 73.9 2 8.8E-05 21.5 3.0 21 25-45 8-28 (188)
468 1x1r_A RAS-related protein M-R 73.9 2 8.8E-05 21.5 3.0 23 23-45 9-34 (178)
469 1moz_A ARL1, ADP-ribosylation 73.8 1.2 5.5E-05 22.6 1.9 21 25-45 19-39 (183)
470 2g6b_A RAS-related protein RAB 73.7 2 9E-05 21.4 3.0 20 26-45 12-32 (180)
471 3bwd_D RAC-like GTP-binding pr 73.7 2 9E-05 21.4 3.0 19 26-44 10-28 (182)
472 1m7b_A RND3/RHOE small GTP-bin 73.2 2 8.7E-05 21.5 2.9 20 26-45 9-29 (184)
473 3igf_A ALL4481 protein; two-do 73.1 2.1 9.1E-05 21.4 3.0 33 27-59 5-37 (374)
474 3b6e_A Interferon-induced heli 73.0 1.8 7.8E-05 21.8 2.6 23 22-44 46-68 (216)
475 3fht_A ATP-dependent RNA helic 72.7 4.7 0.00021 19.5 6.0 33 23-55 63-97 (412)
476 2d7d_A Uvrabc system protein B 72.7 4.8 0.00021 19.5 5.0 61 6-72 17-77 (661)
477 2ew1_A RAS-related protein RAB 72.6 2.1 9.2E-05 21.4 2.9 18 27-44 29-46 (201)
478 2gco_A H9, RHO-related GTP-bin 72.5 2.1 9.3E-05 21.4 2.9 18 27-44 28-45 (201)
479 3i8s_A Ferrous iron transport 72.4 2.1 9.2E-05 21.4 2.8 21 25-45 4-24 (274)
480 3h2y_A GTPase family protein; 72.3 4.8 0.00022 19.4 6.2 37 9-46 146-182 (368)
481 3a1s_A Iron(II) transport prot 72.3 2.3 0.0001 21.2 3.0 20 26-45 7-26 (258)
482 1xtq_A GTP-binding protein RHE 72.1 2.2 9.6E-05 21.3 2.9 21 26-46 8-29 (177)
483 1jwy_B Dynamin A GTPase domain 71.9 3.3 0.00015 20.3 3.8 38 8-45 5-45 (315)
484 1c9k_A COBU, adenosylcobinamid 71.7 4.1 0.00018 19.8 4.2 19 27-45 2-20 (180)
485 2j0s_A ATP-dependent RNA helic 71.4 5.1 0.00023 19.3 5.8 39 77-115 180-219 (410)
486 2afh_E Nitrogenase iron protei 71.4 3.2 0.00014 20.4 3.6 36 27-62 5-40 (289)
487 1x3s_A RAS-related protein RAB 71.3 2.5 0.00011 21.0 3.0 19 26-44 17-35 (195)
488 1mh1_A RAC1; GTP-binding, GTPa 71.1 2.5 0.00011 20.9 3.0 20 26-45 7-27 (186)
489 3iby_A Ferrous iron transport 71.0 2.3 0.0001 21.2 2.8 20 26-45 3-22 (256)
490 3c5c_A RAS-like protein 12; GD 70.9 2.5 0.00011 20.9 3.0 21 25-45 22-43 (187)
491 2p6r_A Afuhel308 helicase; pro 70.6 2.7 0.00012 20.8 3.1 22 22-43 38-59 (702)
492 3ihw_A Centg3; RAS, centaurin, 70.4 2.6 0.00012 20.8 3.0 20 26-45 22-42 (184)
493 1byi_A Dethiobiotin synthase; 70.3 3.2 0.00014 20.3 3.4 22 26-47 3-25 (224)
494 2gf0_A GTP-binding protein DI- 70.0 2.5 0.00011 20.9 2.8 21 25-45 9-29 (199)
495 2p5s_A RAS and EF-hand domain 69.6 2.9 0.00013 20.6 3.0 95 26-120 30-148 (199)
496 2vf7_A UVRA2, excinuclease ABC 69.3 2.5 0.00011 20.9 2.7 16 26-41 38-53 (842)
497 1cip_A Protein (guanine nucleo 68.9 2.2 9.8E-05 21.2 2.3 28 21-48 29-59 (353)
498 2kbe_A ATP-dependent RNA helic 68.3 6 0.00027 18.9 10.8 92 25-116 62-205 (226)
499 2atx_A Small GTP binding prote 68.1 2.9 0.00013 20.6 2.8 20 27-46 21-41 (194)
500 2j9r_A Thymidine kinase; TK1, 67.9 6.1 0.00027 18.9 7.2 87 27-116 31-139 (214)
No 1
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A*
Probab=100.00 E-value=0 Score=270.23 Aligned_cols=144 Identities=23% Similarity=0.393 Sum_probs=135.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHH------------
Q ss_conf 76658989999999999861479958987589988889999998621242678524125788988889------------
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLN------------ 69 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~------------ 69 (145)
++||+|++|++++++++++|.++.||||+||+||||+.+||+||..|+|+++|||.+||+..+...++
T Consensus 138 ~lig~S~~m~~~~~~i~~~a~~~~~Vli~GEsGtGKe~~Ar~iH~~s~r~~~pfv~vnc~al~~~l~eseLFG~~kgaft 217 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFT 217 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSST
T ss_pred CCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCC
T ss_conf 74577999999999999996889828998989858999999999658867999678646889977889885363236766
Q ss_pred -------HHHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHCC-----------HHHEEEECCCCCHHHHHHCCCCCHHHH
Q ss_conf -------99986258748743742068778999999987214-----------010011147768789987089765655
Q T0567 70 -------DFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVELAASNHIIAELY 131 (145)
Q Consensus 70 -------~~l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~-----------~~~RiI~~s~~~l~~l~~~~~~~~~L~ 131 (145)
++++.|+|||||||||+.||.+.|.+|+++++++. .++|+|++|+.|+.+++.+|.|++|||
T Consensus 218 ga~~~~~G~~e~A~gGTLfLdeI~~l~~~~Q~kLLr~le~~~~~~vG~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~DLy 297 (387)
T 1ny5_A 218 GAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLY 297 (387)
T ss_dssp TCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEEECCCCHHHHHHCCCCHHHHH
T ss_conf 63102367777148987998372759999999999999719778678997443466999978989999988399528887
Q ss_pred HHHCCCEEEECCCC
Q ss_conf 75544226507889
Q T0567 132 YCFAMTQIACLPLT 145 (145)
Q Consensus 132 ~~ls~~~i~iPpL~ 145 (145)
|||++++|++|||.
T Consensus 298 yrl~~~~i~~PpLr 311 (387)
T 1ny5_A 298 YRLGVIEIEIPPLR 311 (387)
T ss_dssp HHHTTEEEECCCGG
T ss_pred HHHCCCEECCCCHH
T ss_conf 42071366485934
No 2
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=100.00 E-value=1.4e-44 Score=258.75 Aligned_cols=143 Identities=24% Similarity=0.376 Sum_probs=132.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHH------------
Q ss_conf 76658989999999999861479958987589988889999998621242678524125788988889------------
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLN------------ 69 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~------------ 69 (145)
++||+|+.|++++++++++|.++.||||+||+||||+.+||+||..|+|+ +|||.+||+..+...++
T Consensus 130 ~~ig~s~~m~~~~~~i~~~a~~~~~VLi~GEsGtGKe~~Ar~iH~~S~r~-~pfv~vnc~a~~~~l~eseLFG~ekgaft 208 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK-GAFVDLNCASIPQELAESELFGHEKGAFT 208 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC-SCEEEEESSSSCTTTHHHHHHEECSCSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC-CCCEEEECCCCCHHHHHHHHHCCCCCCCC
T ss_conf 71117399999999999995889958998899858899999999717888-99827756889977889987076557767
Q ss_pred -------HHHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHCC-----------HHHEEEECCCCCHHHHHHCCCCCHHHH
Q ss_conf -------99986258748743742068778999999987214-----------010011147768789987089765655
Q T0567 70 -------DFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVELAASNHIIAELY 131 (145)
Q Consensus 70 -------~~l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~-----------~~~RiI~~s~~~l~~l~~~~~~~~~L~ 131 (145)
++++.|+|||||||||+.||.+.|.+|+++++++. .++|+|++|+.|+.+++++|.|++|||
T Consensus 209 ga~~~~~G~~e~A~~GTLfLdei~~l~~~~Q~kLlr~le~~~~~~vg~~~~~~~d~RiIaat~~~l~~~v~~g~fr~DLy 288 (368)
T 3dzd_A 209 GALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLY 288 (368)
T ss_dssp SCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCCCCCCCHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHCCEEECCCCCCEECCEEEEEECCCCHHHHHHCCCCCHHHH
T ss_conf 62011377567237980882541228999999999999749677578997112377999868979999988499707675
Q ss_pred HHHCCCEEEECCCC
Q ss_conf 75544226507889
Q T0567 132 YCFAMTQIACLPLT 145 (145)
Q Consensus 132 ~~ls~~~i~iPpL~ 145 (145)
|||++++|++|||.
T Consensus 289 ~rl~~~~i~~PpLr 302 (368)
T 3dzd_A 289 YRLSVFQIYLPPLR 302 (368)
T ss_dssp HHHTSEEEECCCGG
T ss_pred HCCCCCEECCCCHH
T ss_conf 53352055487702
No 3
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=100.00 E-value=2.3e-42 Score=246.82 Aligned_cols=144 Identities=24% Similarity=0.324 Sum_probs=134.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHH-----------
Q ss_conf 766589899999999998614799589875899888899999986212426785241257889888899-----------
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLND----------- 70 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~----------- 70 (145)
+|||+|++|++++++++++|.++.||||+||+||||+.+|++||..|.++.+|||.+||...+...++.
T Consensus 3 ~liG~S~~m~~~~~~i~~~a~~~~pvlI~GE~GtGK~~~Ar~iH~~s~~~~~pfv~v~c~~~~~~~~e~~Lfg~~~~~~~ 82 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFT 82 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC
T ss_pred CCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCC
T ss_conf 82889999999999999996899958998989867999999999818767998588646779835567887086333467
Q ss_pred --------HHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHCC-----------HHHEEEECCCCCHHHHHHCCCCCHHHH
Q ss_conf --------9986258748743742068778999999987214-----------010011147768789987089765655
Q T0567 71 --------FIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVELAASNHIIAELY 131 (145)
Q Consensus 71 --------~l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~-----------~~~RiI~~s~~~l~~l~~~~~~~~~L~ 131 (145)
+++.|+||||||+||+.||.+.|.+|++++++.. .++|+|++|+.++.+++.+|.|+++||
T Consensus 83 ~~~~~~~g~l~~a~~GTL~l~~i~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~g~f~~dL~ 162 (304)
T 1ojl_A 83 GADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY 162 (304)
T ss_dssp ---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred CCCCCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCCHHHH
T ss_conf 74111377221357986986052207999999999988728278779997466237999858989999988499658899
Q ss_pred HHHCCCEEEECCCC
Q ss_conf 75544226507889
Q T0567 132 YCFAMTQIACLPLT 145 (145)
Q Consensus 132 ~~ls~~~i~iPpL~ 145 (145)
|+|+..+|.||||.
T Consensus 163 ~rl~~~~i~lPpLr 176 (304)
T 1ojl_A 163 YRLNVVAIEMPSLR 176 (304)
T ss_dssp HHHSSEEEECCCSG
T ss_pred HHHCCCEEECCCCC
T ss_conf 87473755378743
No 4
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=100.00 E-value=7.7e-39 Score=227.89 Aligned_cols=144 Identities=23% Similarity=0.287 Sum_probs=133.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHH-----------
Q ss_conf 766589899999999998614799589875899888899999986212426785241257889888899-----------
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLND----------- 70 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~----------- 70 (145)
.|||+|+.|++++++++++|.++.||||+||+||||+.+|++||..|.++.+||+.+||...+......
T Consensus 7 ~liG~S~~~~~~~~~~~~~a~~~~pvlI~GE~GtGK~~lA~~iH~~s~~~~~~f~~i~c~~~~~~~~~~~l~g~~~~~~~ 86 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFT 86 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-----
T ss_pred CCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHCCCCCCCCC
T ss_conf 80887999999999999984889968998989978999999999960035785322340343121367775277778754
Q ss_pred --------HHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHCC-----------HHHEEEECCCCCHHHHHHCCCCCHHHH
Q ss_conf --------9986258748743742068778999999987214-----------010011147768789987089765655
Q T0567 71 --------FIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVELAASNHIIAELY 131 (145)
Q Consensus 71 --------~l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~-----------~~~RiI~~s~~~l~~l~~~~~~~~~L~ 131 (145)
++++|+||||||+||+.||.+.|.+|++++.... .++|+|++++.++.+++.+|.|+++||
T Consensus 87 ~~~~~~~g~le~a~~GtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~s~~~~~~~~~~g~~~~~l~ 166 (265)
T 2bjv_A 87 GAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLL 166 (265)
T ss_dssp ----CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred HHHCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHCCCCCCCCC
T ss_conf 12014567113647976997455678989999999985019079789996255557774043468899987387541000
Q ss_pred HHHCCCEEEECCCC
Q ss_conf 75544226507889
Q T0567 132 YCFAMTQIACLPLT 145 (145)
Q Consensus 132 ~~ls~~~i~iPpL~ 145 (145)
++++...|.||||.
T Consensus 167 ~~l~~~~i~vPpLr 180 (265)
T 2bjv_A 167 DALAFDVVQLPPLR 180 (265)
T ss_dssp HHHCSEEEECCCGG
T ss_pred CCCCCEEEECCCCC
T ss_conf 24565189789866
No 5
>3co5_A Putative two-component system transcriptional response regulator; structural genomics, APC89341.1, sigma-54 interaction domain; 2.40A {Neisseria gonorrhoeae fa 1090}
Probab=100.00 E-value=1.1e-38 Score=227.00 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=127.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 97665898999999999986147995898758998888999999862124267852412578898888999986258748
Q T0567 1 VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTL 80 (145)
Q Consensus 1 ~~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a~gGtL 80 (145)
.+|||+|+.|++++++++++|.++.||+|+||+||||+.+|++||..|.+...+|+..+|.... .+.++.++||||
T Consensus 4 ~~liG~S~~m~~l~~~l~~~a~~~~pVlI~GE~GtGK~~~A~~IH~~s~~~~~~~~~~~~~~~~----~~~l~~~~~GTl 79 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMP----MELLQKAEGGVL 79 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCH----HHHHHHTTTSEE
T ss_pred CCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCH----HHHHHHCCCCCE
T ss_conf 7836799999999999999958798289982899877999999987277657972564354062----678874459936
Q ss_pred EECCHHHCCHHHHHHHHHHHHHC-CHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEEEECCCC
Q ss_conf 74374206877899999998721-401001114776878998708976565575544226507889
Q T0567 81 VLSHPEHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 81 ~l~ei~~L~~~~Q~~L~~~l~~~-~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
||+||+.||++.|.+|++++++. ..++|+|++++.++.. .++.|+++|||+|+..+|+|||||
T Consensus 80 ~l~~i~~l~~~~Q~~Ll~~l~~~~~~~~RlI~st~~~~~~--~~~~~~~~L~~~l~~~~i~vPpLs 143 (143)
T 3co5_A 80 YVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGS--DGISCEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTT--C--CHHHHHHHHSSSEEEEECCCC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH--HHCCCHHHHHHHHCCCEEECCCCC
T ss_conf 2366244899999999999975386005999968969998--837506999987578778449898
No 6
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20
Probab=99.58 E-value=5.9e-15 Score=99.54 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=87.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC------------------------------CC
Q ss_conf 766589899999999998614799589875899888899999986212------------------------------42
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR------------------------------NA 51 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~------------------------------~~ 51 (145)
+++|+..+.+.+. +..+.....+|||+|+|||||+++|+.++..-+ +.
T Consensus 25 ~i~Gq~~~k~al~--iaa~~~g~h~vLl~G~PG~GKT~lar~l~~iLP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
T 1g8p_A 25 AIVGQEDMKLALL--LTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRK 102 (350)
T ss_dssp GSCSCHHHHHHHH--HHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEE
T ss_pred HCCCHHHHHHHHH--HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 5579099999999--99851699718997899956999999999866761043148501466665631003545442115
Q ss_pred CCCCCEECCCCCCHHH-----------------HHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHCC----------
Q ss_conf 6785241257889888-----------------8999986258748743742068778999999987214----------
Q T0567 52 QGEFVYRELTPDNAPQ-----------------LNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH---------- 104 (145)
Q Consensus 52 ~~~fv~~~~~~~~~~~-----------------~~~~l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~---------- 104 (145)
..+|+........... ..+.+..|++|+||+||++.+++..|..|++.|+++.
T Consensus 103 ~~~~~~~~~~~~~~~l~G~~d~~~~l~~G~~~~~pG~l~~Ah~GVl~lDEi~~~~~~~~~aLl~~mee~~v~i~r~g~~~ 182 (350)
T 1g8p_A 103 PTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSI 182 (350)
T ss_dssp CCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEECCCCCEEEECCHHHHCHHHHHHHHHHHHHCEEEECCCCCCC
T ss_conf 67654578988720026841256663069730146632305698786155877579999999999861436504678636
Q ss_pred ---HHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEEEEC
Q ss_conf ---01001114776878998708976565575544226507
Q T0567 105 ---RPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACL 142 (145)
Q Consensus 105 ---~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~iP 142 (145)
.++.+|++.+.. .+.+.+.++.|+. +.+.+.
T Consensus 183 ~~pa~f~liaa~Np~------~~~l~~~lldRf~-~~~~i~ 216 (350)
T 1g8p_A 183 RHPARFVLVGSGNPE------EGDLRPQLLDRFG-LSVEVL 216 (350)
T ss_dssp EEECCEEEEEEECSC------SCCCCHHHHTTCS-EEEECC
T ss_pred CCCHHHHHHHHCCCC------CCCCCHHHHHHHC-CEEECC
T ss_conf 784436768505988------5525488774302-245577
No 7
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.58 E-value=3.6e-14 Score=95.36 Aligned_cols=132 Identities=19% Similarity=0.193 Sum_probs=88.1
Q ss_pred CCCCCCHHHHHHHHHHHHH---HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-CHHHHHHHHHHH-C
Q ss_conf 7665898999999999986---1479958987589988889999998621242678524125788-988889999862-5
Q T0567 2 ELIGRSEWINQYRRRLQQL---SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-NAPQLNDFIALA-Q 76 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~---a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-~~~~~~~~l~~a-~ 76 (145)
++||+....+.+...++.. ...-.+++++|+|||||+++|+.|-... +..|+..+.... ........+... .
T Consensus 26 d~vGQ~~i~~~l~~~i~~~~~~~~~~~~lLf~GPPG~GKTTlA~iia~~~---~~~~~~~s~~~~~~~~d~~~~~~~~~~ 102 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVKQGDMAAILTSLER 102 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCSHHHHHHHHHHCCT
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 80596999999999999988428888817888989988999999999822---887455778532247899999975024
Q ss_pred CCEEEECCHHHCCHHHHHHHHHHHHHCC------------------HHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCE
Q ss_conf 8748743742068778999999987214------------------0100111477687899870897656557554422
Q T0567 77 GGTLVLSHPEHLTREQQYHLVQLQSQEH------------------RPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQ 138 (145)
Q Consensus 77 gGtL~l~ei~~L~~~~Q~~L~~~l~~~~------------------~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~ 138 (145)
+.++|+||++++++.+|+.|+..++... .++.+|++|+.+. .+.+.|..|++..
T Consensus 103 ~~ilfIDEihrl~k~~qd~ll~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~i~att~~~-------~~~~~l~sR~~~~- 174 (334)
T 1in4_A 103 GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-------LLSSPLRSRFGII- 174 (334)
T ss_dssp TCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-------GSCHHHHTTCSEE-
T ss_pred CCCHHHHHHHHHCHHHHHHCCCCCCCCEEEEEECCCCCCHHHCCCCCCEEEEEECCCCC-------CCCHHHHHHEEEE-
T ss_conf 64011345754235778752341002068888547631201114677658998604765-------3535666330136-
Q ss_pred EEECCC
Q ss_conf 650788
Q T0567 139 IACLPL 144 (145)
Q Consensus 139 i~iPpL 144 (145)
+.++++
T Consensus 175 ~~~~~~ 180 (334)
T 1in4_A 175 LELDFY 180 (334)
T ss_dssp EECCCC
T ss_pred EECCCC
T ss_conf 523778
No 8
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.46 E-value=5.7e-13 Score=88.89 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=89.7
Q ss_pred CCCCCCHHHHHHHHHHHH----H--------HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCC-----
Q ss_conf 766589899999999998----6--------14799589875899888899999986212426785241257889-----
Q T0567 2 ELIGRSEWINQYRRRLQQ----L--------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN----- 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~----~--------a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~----- 64 (145)
..+|+..+.+.+...+.+ . ......+|++||||||||.+|+++... ...+|+.++|....
T Consensus 16 ~ViGQ~~A~~~v~~av~~~~~~~~~~~~~~~~~~~~giLl~GPpG~GKT~lAkalA~~---l~~~~~~~~~s~~~~~~~~ 92 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL---ANAPFIKVEATKFTEVGYV 92 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH---HTCCEEEEEGGGGSSCCSG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HHCCHHCCCCCCCEEEEEE
T ss_conf 1149699999999999989876145788766789866999899998889999999997---3234120255310120355
Q ss_pred ----HHHHHHHHHHH--------CCCEEEECCHHHCCHH------------HHHHHHHHHHHCC----------HHHEEE
Q ss_conf ----88889999862--------5874874374206877------------8999999987214----------010011
Q T0567 65 ----APQLNDFIALA--------QGGTLVLSHPEHLTRE------------QQYHLVQLQSQEH----------RPFRLI 110 (145)
Q Consensus 65 ----~~~~~~~l~~a--------~gGtL~l~ei~~L~~~------------~Q~~L~~~l~~~~----------~~~RiI 110 (145)
......++..| +.+++||||||.+.+. .+..|+..++... .++-+|
T Consensus 93 ~g~~~~~~~~~~~~a~~~~~~~~~~~IIf~DEIDki~~~~~~~~~~~~~~~v~~~LL~~~dg~~~~~~~~~i~~snilfi 172 (310)
T 1ofh_A 93 GKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp GGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEECCCEEEE
T ss_conf 40530456677888740155524885688455333221016776230224789875188719988558808974732687
Q ss_pred ECCCCCHHHHHHCCCCCHHHHHHHCCCEEEECCCC
Q ss_conf 14776878998708976565575544226507889
Q T0567 111 GIGDTSLVELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 111 ~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
++...+ ......|+|+|..||... +.++|++
T Consensus 173 ~~~a~~---~~~~~~~~Pel~~R~d~i-i~~~~~~ 203 (310)
T 1ofh_A 173 ASGAFQ---VARPSDLIPELQGRLPIR-VELTALS 203 (310)
T ss_dssp EEECCS---SSCGGGSCHHHHHTCCEE-EECCCCC
T ss_pred CCCCHH---HCCCCCCCHHHCCCCEEE-EECCCCC
T ss_conf 256311---048232795560777378-7458899
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.44 E-value=1.4e-12 Score=86.80 Aligned_cols=133 Identities=12% Similarity=0.188 Sum_probs=90.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC---------------------CCCEECC
Q ss_conf 7665898999999999986147995898758998888999999862124267---------------------8524125
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG---------------------EFVYREL 60 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~---------------------~fv~~~~ 60 (145)
++||+....+.+...++. ...+..++|+|++|+||+++|+++...-....+ -++.++.
T Consensus 24 diig~~~~~~~L~~~i~~-~~~~~~iLl~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~d~~e~~~ 102 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 102 (250)
T ss_dssp GCCSCHHHHHHHHHHHHH-TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEET
T ss_pred HHCCHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECH
T ss_conf 915959999999999985-9987069888999876899999999984685466667666545899997489861899520
Q ss_pred CCC-CHHHHHHHHHHH-----CCC--EEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHH
Q ss_conf 788-988889999862-----587--487437420687789999999872140100111477687899870897656557
Q T0567 61 TPD-NAPQLNDFIALA-----QGG--TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
Q Consensus 61 ~~~-~~~~~~~~l~~a-----~gG--tL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~ 132 (145)
... ......+++..+ .++ +++|||+|.|+.+.|..|+.++++...++++|++|+.. ..+.+.+..
T Consensus 103 ~~~~~i~~ir~l~~~~~~~~~~~~~kviiIDeid~l~~~~qn~Llk~lE~~~~~~~~Il~tn~~-------~~i~~~i~S 175 (250)
T 1njg_A 103 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP-------QKLPVTILS 175 (250)
T ss_dssp TCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG-------GGSCHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCH-------HHCHHHHHC
T ss_conf 4207999999999999746514897799997805299999999999976678883799966984-------444287856
Q ss_pred HHCCCEEEECCC
Q ss_conf 554422650788
Q T0567 133 CFAMTQIACLPL 144 (145)
Q Consensus 133 ~ls~~~i~iPpL 144 (145)
|... +.+||+
T Consensus 176 R~~~--i~~~~~ 185 (250)
T 1njg_A 176 RCLQ--FHLKAL 185 (250)
T ss_dssp TSEE--EECCCC
T ss_pred CCCE--EEEECC
T ss_conf 5763--355269
No 10
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.38 E-value=7.1e-12 Score=83.00 Aligned_cols=133 Identities=13% Similarity=0.204 Sum_probs=88.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH--CCC--CC--------------C---CCCEECC
Q ss_conf 7665898999999999986147995898758998888999999862--124--26--------------7---8524125
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF--GRN--AQ--------------G---EFVYREL 60 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~--s~~--~~--------------~---~fv~~~~ 60 (145)
++||++...+.+++.++. ......++|+|++|+||+++|+.+-.. +.. .. + -++.++.
T Consensus 17 d~ig~~~~~~~L~~~~~~-~~~~~~~L~~Gp~G~GKtt~A~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 95 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 95 (373)
T ss_dssp TSCSCHHHHHHHHHHHHH-TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEET
T ss_pred HCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECC
T ss_conf 805969999999999986-9977237657999987999999999996787888768775216899997589872798531
Q ss_pred CCC-CHHHHHHHHHHH-----CCC--EEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHH
Q ss_conf 788-988889999862-----587--487437420687789999999872140100111477687899870897656557
Q T0567 61 TPD-NAPQLNDFIALA-----QGG--TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
Q Consensus 61 ~~~-~~~~~~~~l~~a-----~gG--tL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~ 132 (145)
... ....+.++++.+ .|+ ++++||+|.|+.+.|..|+.+++....++.+|++|+..- .+.+.+..
T Consensus 96 ~~~~~i~~ir~l~~~~~~~~~~~~~kviiide~d~l~~~~~n~Llk~lEep~~~~~~il~t~~~~-------~l~~ti~S 168 (373)
T 1jr3_A 96 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ-------KLPVTILS 168 (373)
T ss_dssp TCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG-------GSCHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHH-------HCCHHHHH
T ss_conf 20188999999999985265479986999868464999999999999857986728988558746-------46388860
Q ss_pred HHCCCEEEECCC
Q ss_conf 554422650788
Q T0567 133 CFAMTQIACLPL 144 (145)
Q Consensus 133 ~ls~~~i~iPpL 144 (145)
|. ..+.++|+
T Consensus 169 Rc--~~~~~~~~ 178 (373)
T 1jr3_A 169 RC--LQFHLKAL 178 (373)
T ss_dssp TS--EEEECCCC
T ss_pred HH--HHHCCCCC
T ss_conf 10--21101457
No 11
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.37 E-value=1.4e-11 Score=81.48 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=106.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHC----CCCC---EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHH--------
Q ss_conf 766589899999999998614----7995---8987589988889999998621242678524125788988--------
Q T0567 2 ELIGRSEWINQYRRRLQQLSE----TDIA---VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAP-------- 66 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~----~~~p---vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~-------- 66 (145)
+++|+..++..+-+.+.+.-. .+.| .|+.|++|+||+.+|+.+...-......|+.+|+......
T Consensus 559 ~ViGQ~~Ai~~Ia~aI~~~raGl~~~~kP~gsflf~GptgvGKtelAk~LA~~lfg~~~~~i~~dmse~~~~~~~~~liG 638 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIG 638 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHCC
T ss_conf 44280899999999999986479999998658998778873379999999999628964069962445324003877548
Q ss_pred ------------HHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHCC-----------HHHEEEECCCCCHH-----
Q ss_conf ------------88999986258748743742068778999999987214-----------01001114776878-----
Q T0567 67 ------------QLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLV----- 118 (145)
Q Consensus 67 ------------~~~~~l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~-----------~~~RiI~~s~~~l~----- 118 (145)
.+.+.+.+...++++|||||...++.|..|++.++.+. .|+-+|.+|+.--.
T Consensus 639 ~~pgyvg~~~gg~lt~~v~~~p~~vil~deieka~~~v~~~l~~~~~~G~l~d~~G~~~~~~n~iii~Tsn~g~~~~~~~ 718 (854)
T 1qvr_A 639 APPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEG 718 (854)
T ss_dssp ------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHCCCCCEECCCCCEEECCEEEEEEECCCCHHHHHHH
T ss_conf 99976773568707899983898599971176457899999997636782268999888455059998564344988740
Q ss_pred --------------HHHHCCCCCHHHHHHHCCCEEEECCCC
Q ss_conf --------------998708976565575544226507889
Q T0567 119 --------------ELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 119 --------------~l~~~~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
.-.-+..|+|+|+.|+..+ |...||+
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~f~pef~~r~d~i-i~f~~l~ 758 (854)
T 1qvr_A 719 LQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEI-VVFRPLT 758 (854)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBC-CBCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCEE-EECCCCC
T ss_conf 025888799999999999865799888317859-9728999
No 12
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.36 E-value=5.4e-12 Score=83.65 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=88.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCH-HHHHHHHHHH--
Q ss_conf 766589899999999998614---7995898758998888999999862124267852412578898-8889999862--
Q T0567 2 ELIGRSEWINQYRRRLQQLSE---TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNA-PQLNDFIALA-- 75 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~---~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~-~~~~~~l~~a-- 75 (145)
++||+....+++...++..-. .-.+++++|+||||||++|++|... .+.+|+.++...... ......+..+
T Consensus 13 d~iGq~~v~~~l~~~l~~~~~~~~~~~~~Ll~GPPG~GKTtlAr~iA~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE---LGVNLRVTSGPAIEKPGDLAAILANSLE 89 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH---HTCCEEEECTTTCCSHHHHHHHHTTTCC
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 9489799999999999978744888875998898998899999999998---6889634568755553035678886015
Q ss_pred CCCEEEECCHHHCCHHHHHHHHHHHHHC------------------CHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCC
Q ss_conf 5874874374206877899999998721------------------4010011147768789987089765655755442
Q T0567 76 QGGTLVLSHPEHLTREQQYHLVQLQSQE------------------HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT 137 (145)
Q Consensus 76 ~gGtL~l~ei~~L~~~~Q~~L~~~l~~~------------------~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~ 137 (145)
.+..+|+||++.+....|..+....+.. ..++.+|++|+.. ..+.+.+..|+...
T Consensus 90 ~~~i~~iDEi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tn~~-------~~l~~~l~~R~~~~ 162 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP-------GLITAPLLSRFGIV 162 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC-------SSCSCSTTTTCSCE
T ss_pred CCCEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCC-------CCCCCCCCCCCCCE
T ss_conf 77610056653012210002323110467766653066763144576653899853773-------44672003765202
Q ss_pred EEEECC
Q ss_conf 265078
Q T0567 138 QIACLP 143 (145)
Q Consensus 138 ~i~iPp 143 (145)
+.+++
T Consensus 163 -~~~~~ 167 (324)
T 1hqc_A 163 -EHLEY 167 (324)
T ss_dssp -EECCC
T ss_pred -ECCCC
T ss_conf -11688
No 13
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.35 E-value=1.1e-11 Score=82.06 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHHHHHC-----CCC---CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC----CCH----H
Q ss_conf 66589899999999998614-----799---5898758998888999999862124267852412578----898----8
Q T0567 3 LIGRSEWINQYRRRLQQLSE-----TDI---AVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP----DNA----P 66 (145)
Q Consensus 3 liG~S~~m~~l~~~i~~~a~-----~~~---pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~----~~~----~ 66 (145)
+++.++.++++++.++.+.. ... .||++|++||||+.+|++|... .+.||+.++|.. ... .
T Consensus 35 ~i~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~iLL~GppGtGKT~la~aiA~~---~~~~~i~i~~~~~~~g~~~~~~~~ 111 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE---SNFPFIKICSPDKMIGFSETAKCQ 111 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH---HTCSEEEEECGGGCTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCCEECCCCEEEEECHHHHHH
T ss_conf 75757379999999999999985168999857998897997699999999998---788950322561024313479999
Q ss_pred HHHHHHHHHCC---CEEEECCHHHCCH----------HHHHHHHHHHHHCC---HHHEEEECCCCCHHHHHHCCCCCHHH
Q ss_conf 88999986258---7487437420687----------78999999987214---01001114776878998708976565
Q T0567 67 QLNDFIALAQG---GTLVLSHPEHLTR----------EQQYHLVQLQSQEH---RPFRLIGIGDTSLVELAASNHIIAEL 130 (145)
Q Consensus 67 ~~~~~l~~a~g---GtL~l~ei~~L~~----------~~Q~~L~~~l~~~~---~~~RiI~~s~~~l~~l~~~~~~~~~L 130 (145)
.+..+|+.|.. .+|||||||.+-. .....|+..++... .++.+|++|+. +..+ ..-.+.
T Consensus 112 ~i~~~F~~A~~~~p~Il~iDEId~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~tTn~-~~~l-d~~~l~--- 186 (272)
T 1d2n_A 112 AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR-KDVL-QEMEML--- 186 (272)
T ss_dssp HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC-HHHH-HHTTCT---
T ss_pred HHHHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCCC-CHHHHH---
T ss_conf 99999998753588389970465664025778843599999999997286656777289997898-0005-722440---
Q ss_pred HHHHCCCEEEECCC
Q ss_conf 57554422650788
Q T0567 131 YYCFAMTQIACLPL 144 (145)
Q Consensus 131 ~~~ls~~~i~iPpL 144 (145)
.||.. .|.+|.+
T Consensus 187 -~rF~~-~i~vP~~ 198 (272)
T 1d2n_A 187 -NAFST-TIHVPNI 198 (272)
T ss_dssp -TTSSE-EEECCCE
T ss_pred -CCCCE-EEECCCC
T ss_conf -86660-8855980
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.35 E-value=8.1e-12 Score=82.69 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=84.6
Q ss_pred CCCCCCHHHHHHHHHHHHHH----------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------CC
Q ss_conf 76658989999999999861----------47995898758998888999999862124267852412578-------89
Q T0567 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------DN 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a----------~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~~ 64 (145)
+++|.....+++++.+..+- ..+..+|++|+|||||+++|++|... ...+|+.++|.. .+
T Consensus 13 di~G~~~~k~~l~e~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~lakala~~---~~~~~~~v~~~~l~~~~~g~~ 89 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE---AKVPFFTISGSDFVEMFVGVG 89 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH---HTCCEEEECSCSSTTSCCCCC
T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH---CCCCEEEEEHHHHHHHCCCHH
T ss_conf 96358999999999999987999999759998975786689998776999999988---099869988678216022076
Q ss_pred HHHHHHHHHHHCCC---EEEECCHHHCCHH----------HH----HHHHHHHHH--CCHHHEEEECCCCCHHHHHHCCC
Q ss_conf 88889999862587---4874374206877----------89----999999872--14010011147768789987089
Q T0567 65 APQLNDFIALAQGG---TLVLSHPEHLTRE----------QQ----YHLVQLQSQ--EHRPFRLIGIGDTSLVELAASNH 125 (145)
Q Consensus 65 ~~~~~~~l~~a~gG---tL~l~ei~~L~~~----------~Q----~~L~~~l~~--~~~~~RiI~~s~~~l~~l~~~~~ 125 (145)
...+...++.|... ++||||+|.+... .. ..++..++. ...++-+|++|+.+ . .
T Consensus 90 ~~~l~~~f~~A~~~~P~Il~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~id~~~~~~~v~vIatTn~~-~------~ 162 (257)
T 1lv7_A 90 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP-D------V 162 (257)
T ss_dssp HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT-T------T
T ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-C------C
T ss_conf 99999999999975998999977556575678988887589999999999995287778998999737993-0------0
Q ss_pred CCHHHHH--HHCCCEEEECCC
Q ss_conf 7656557--554422650788
Q T0567 126 IIAELYY--CFAMTQIACLPL 144 (145)
Q Consensus 126 ~~~~L~~--~ls~~~i~iPpL 144 (145)
+++.|.. ||.. .|.+|+.
T Consensus 163 ld~al~R~~Rfd~-~i~~~~P 182 (257)
T 1lv7_A 163 LDPALLRPGRFDR-QVVVGLP 182 (257)
T ss_dssp SCGGGGSTTSSCE-EEECCCC
T ss_pred CCHHHCCCCCCCE-EEECCCC
T ss_conf 7995758987877-9877995
No 15
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.1e-11 Score=82.01 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=85.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC--CCCCCCEECCCCCCHHHH-HH---HHHH-
Q ss_conf 7665898999999999986147995898758998888999999862124--267852412578898888-99---9986-
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN--AQGEFVYRELTPDNAPQL-ND---FIAL- 74 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~--~~~~fv~~~~~~~~~~~~-~~---~l~~- 74 (145)
+++|+....+.+++.++. ..-.+++|+|++||||+++|+++...... ....+...++........ .. ....
T Consensus 26 diig~~~~~~~l~~~i~~--~~~~~lLl~GppG~GKTtla~~lak~~~~~~~~~~~~e~~~~~~~~i~~~~~~~~~~~~~ 103 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDE--GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST 103 (340)
T ss_dssp GCCSCHHHHHHHHHHHHT--TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 904969999999999977--999869988979999999999999874045667743673144468601102455542000
Q ss_pred -----HCCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEEEECCC
Q ss_conf -----2587487437420687789999999872140100111477687899870897656557554422650788
Q T0567 75 -----AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
Q Consensus 75 -----a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~iPpL 144 (145)
...-++++||+|.++...|..|++.++....++++|.+++..- .+.+.|..|... +.++|+
T Consensus 104 ~~~~~~~~kviiiDe~d~~~~~~~~~Ll~~le~~~~~~~~il~~n~~~-------~i~~~L~src~~--i~~~~~ 169 (340)
T 1sxj_C 104 RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAH-------KLTPALLSQCTR--FRFQPL 169 (340)
T ss_dssp CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG-------GSCHHHHTTSEE--EECCCC
T ss_pred HHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCCC-------CCCCCHHCHHEE--ECCCCC
T ss_conf 001445527984015777788789999999874350012102246410-------120030031023--101246
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=6.9e-12 Score=83.05 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=89.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH--CCCCCCCCCEECCCCCCHHH-HH---HHHH--
Q ss_conf 7665898999999999986147995898758998888999999862--12426785241257889888-89---9998--
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF--GRNAQGEFVYRELTPDNAPQ-LN---DFIA-- 73 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~--s~~~~~~fv~~~~~~~~~~~-~~---~~l~-- 73 (145)
+++|+....+++.+.++. ..-.+++++|++|+||+++|+++-.. .......++.++|....... .. ..+.
T Consensus 26 diig~~~~~~~l~~~i~~--~~~~~lLl~Gp~G~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKT--GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 103 (327)
T ss_dssp TCCSCHHHHHHHHHHHHH--TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 910969999999999977--999879888979999999999999997640247772144354556548999999998862
Q ss_pred ----HHCCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEEEECCC
Q ss_conf ----62587487437420687789999999872140100111477687899870897656557554422650788
Q T0567 74 ----LAQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
Q Consensus 74 ----~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~iPpL 144 (145)
.....++++||+|.++...|..|+..++....++++|++++..- .+.+.+..|... +.++|+
T Consensus 104 ~~~~~~~~~iiiide~d~~~~~~~~~Ll~~le~~~~~~~~i~~~~~~~-------~i~~~l~src~~--i~~~~~ 169 (327)
T 1iqp_A 104 KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS-------KIIEPIQSRCAI--FRFRPL 169 (327)
T ss_dssp CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG-------GSCHHHHHTEEE--EECCCC
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHH-------HCCHHHHHHHHH--HCCCCC
T ss_conf 113687647999867330116579999998850577538886158722-------153778626644--102456
No 17
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.32 E-value=4.2e-11 Score=78.86 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=93.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH--CCCCCCCCCEECCCCCCH-HHHHHHHHHH---
Q ss_conf 7665898999999999986147995898758998888999999862--124267852412578898-8889999862---
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF--GRNAQGEFVYRELTPDNA-PQLNDFIALA--- 75 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~--s~~~~~~fv~~~~~~~~~-~~~~~~l~~a--- 75 (145)
++||+....++++..++. ....+++|+|++|+||+++|+.+... .......|+.+++..... ......+...
T Consensus 18 diig~~~~~~~l~~~i~~--~~~~~lLl~Gp~G~GKTt~a~~i~k~l~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GCCSCHHHHHHHHHHHHT--TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 912959999999999976--998859988899986778999888887525666660235455666666888878998750
Q ss_pred ------CCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEEEECCCC
Q ss_conf ------5874874374206877899999998721401001114776878998708976565575544226507889
Q T0567 76 ------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 76 ------~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
..-.+++|+++.++.+.|..|+..++....++++|++++.. ....+.+-.|+.. +.++|++
T Consensus 96 ~~~~~~~~~iiiid~~~~~~~~~~~~ll~~~~~~~~~~~~i~~t~~~-------~~i~~~l~sR~~~--i~~~~~~ 162 (226)
T 2chg_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV-------SRIIEPIQSRCAV--FRFKPVP 162 (226)
T ss_dssp CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG-------GGSCHHHHTTSEE--EECCCCC
T ss_pred HHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCH-------HHCCHHHHCCCCC--CCCCCCC
T ss_conf 03138970799850033411669999764512687430333233674-------3365768712331--0002565
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.31 E-value=2.3e-11 Score=80.27 Aligned_cols=133 Identities=12% Similarity=0.144 Sum_probs=83.8
Q ss_pred CCCCCCHHHHHHHHHHHH----------HHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-------C
Q ss_conf 766589899999999998----------61479958987589988889999998621242678524125788-------9
Q T0567 2 ELIGRSEWINQYRRRLQQ----------LSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-------N 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~----------~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-------~ 64 (145)
+++|.....+++++.+.. .......|||+|++||||+++|++|.... ..+++.++|... .
T Consensus 22 di~G~e~~k~~l~e~i~~~~~~~~~~~~~~~p~~giLL~GppGtGKT~la~aiA~~~---~~~~~~v~~~~l~~~~~g~~ 98 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSKYVGDG 98 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSSSCSCH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCCCCCHHHHHHHCCCHH
T ss_conf 856989999999999997861999883589998327878949998999999999985---25631132677654014479
Q ss_pred HHHHHHHHHHH---CCCEEEECCHHHCCHH-----------HHHHHHHHHHH-----CCHHHEEEECCCCCHHHHHHCCC
Q ss_conf 88889999862---5874874374206877-----------89999999872-----14010011147768789987089
Q T0567 65 APQLNDFIALA---QGGTLVLSHPEHLTRE-----------QQYHLVQLQSQ-----EHRPFRLIGIGDTSLVELAASNH 125 (145)
Q Consensus 65 ~~~~~~~l~~a---~gGtL~l~ei~~L~~~-----------~Q~~L~~~l~~-----~~~~~RiI~~s~~~l~~l~~~~~ 125 (145)
...+...+..| ...+|||||+|.+-.. ....+...+.. ...++-+|++|+. +. .
T Consensus 99 ~~~~~~~f~~a~~~~p~Il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~viatTn~-~~------~ 171 (297)
T 3b9p_A 99 EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR-PQ------E 171 (297)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC-GG------G
T ss_pred HHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-HH------H
T ss_conf 9999999999985298765257655664447788732788999899999876125556776489984488-02------1
Q ss_pred CCHHHHHHHCCCEEEECCCC
Q ss_conf 76565575544226507889
Q T0567 126 IIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 126 ~~~~L~~~ls~~~i~iPpL~ 145 (145)
+.+.+..|+... |.+|+++
T Consensus 172 id~al~rRf~~~-i~~~~p~ 190 (297)
T 3b9p_A 172 LDEAALRRFTKR-VYVSLPD 190 (297)
T ss_dssp BCHHHHHHCCEE-EECCCCC
T ss_pred CCHHHHCCCEEE-ECCCCCC
T ss_conf 578885841289-6279949
No 19
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.31 E-value=4.9e-12 Score=83.87 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=74.3
Q ss_pred CCCCCCHHHHHHHHHHHHHH----------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------CC
Q ss_conf 76658989999999999861----------47995898758998888999999862124267852412578-------89
Q T0567 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------DN 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a----------~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~~ 64 (145)
++.|.....+++++.+.-+- ....-||++|+|||||+++|++|-.. ...+|+.++|.. .+
T Consensus 41 Di~G~~~~k~~l~~~v~~l~~~~~~~~~g~~~~~giLL~GPpGtGKT~la~aiA~e---~~~~~~~i~~~~l~~~~~ges 117 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE---ARVPFITASGSDFVEMFVGVG 117 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH---TTCCEEEEEHHHHHHSTTTHH
T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH---CCCCEEEEEHHHHHHCCCCHH
T ss_conf 97079999999999999844999998669999980377579999833899999987---499769988699533342099
Q ss_pred HHHHHHHHHHHC---CCEEEECCHHHCCHH--------------HHHHHHHHHHH--CCHHHEEEECCCCC
Q ss_conf 888899998625---874874374206877--------------89999999872--14010011147768
Q T0567 65 APQLNDFIALAQ---GGTLVLSHPEHLTRE--------------QQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
Q Consensus 65 ~~~~~~~l~~a~---gGtL~l~ei~~L~~~--------------~Q~~L~~~l~~--~~~~~RiI~~s~~~ 116 (145)
...+..+|+.|. ..+|||||+|.+-.. ....|+..++. ...++-+|++|+.+
T Consensus 118 e~~l~~~F~~A~~~~P~IlfiDeiD~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~vivIatTN~~ 188 (278)
T 1iy2_A 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 188 (278)
T ss_dssp HHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 99999999999986997999977577564678998887589999999999995486788998999807995
No 20
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.31 E-value=1.4e-11 Score=81.50 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=101.7
Q ss_pred CCCCCCHHHHHHHHHHHHHH----CCCCC---EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHH--------
Q ss_conf 76658989999999999861----47995---8987589988889999998621242678524125788988--------
Q T0567 2 ELIGRSEWINQYRRRLQQLS----ETDIA---VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAP-------- 66 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a----~~~~p---vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~-------- 66 (145)
.++|+.+++..+.+.+++.- ..+.| +|+.|++|+||+.+|+.+.... ..+|+.+||+....+
T Consensus 459 ~viGQ~~Av~~v~~~i~~~~aGl~~~~rPigsfLf~GPtGvGKTelAk~LA~~l---~~~lir~Dmsey~e~~svsrLiG 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCC
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCCHHHHHHHC
T ss_conf 740858999999999999973899999874058987788756899999999980---68868842565456208989717
Q ss_pred ------------HHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHCC-----------HHHEEEECCCCCHHHH---
Q ss_conf ------------88999986258748743742068778999999987214-----------0100111477687899---
Q T0567 67 ------------QLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVEL--- 120 (145)
Q Consensus 67 ------------~~~~~l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~-----------~~~RiI~~s~~~l~~l--- 120 (145)
.+.+.+.+...++++|||||...++.+..|+++++.+. .++-+|.+|+.-....
T Consensus 536 appgyvG~~~gG~Lt~~vr~~p~sVvLlDEiEKAh~~V~~~lLqild~G~ltd~~Gr~vdf~ntiiI~TSN~g~~~~~~~ 615 (758)
T 1r6b_X 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK 615 (758)
T ss_dssp CCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCEECCCCCEEEECCCCCHHHHHHC
T ss_conf 99755553468830086640765433356544346789999986537861469999673275656886454024666531
Q ss_pred ---------------HHCCCCCHHHHHHHCCCEEEECCCC
Q ss_conf ---------------8708976565575544226507889
Q T0567 121 ---------------AASNHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 121 ---------------~~~~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
.-+..|.|+|..|+..+ +..-||+
T Consensus 616 ~~gf~~~~~~~~~~~~l~~~F~PEflnRid~i-v~F~~L~ 654 (758)
T 1r6b_X 616 SIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI-IWFDHLS 654 (758)
T ss_dssp ------------CHHHHHHHSCHHHHTTCSEE-EECCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHCCCCEE-EEECCCC
T ss_conf 36877503389999999863898686628868-8608999
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.28 E-value=9.8e-12 Score=82.24 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=72.8
Q ss_pred CCCCCCHHHHHHHHHHHHH------HC----CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------CC
Q ss_conf 7665898999999999986------14----7995898758998888999999862124267852412578-------89
Q T0567 2 ELIGRSEWINQYRRRLQQL------SE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------DN 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~------a~----~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~~ 64 (145)
+++|...+.+++++.+..+ .. ....+|++|++||||+++|+++.... ..+|+.++|.. .+
T Consensus 17 di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ala~e~---~~~~~~i~~s~l~~~~~g~~ 93 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMFVGVG 93 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHSCTTHH
T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHC---CCCEEEEEHHHHHHCCCCHH
T ss_conf 953799999999999999879999997599988736876799877208999999773---99769988699646235389
Q ss_pred HHHHHHHHHHHCC---CEEEECCHHHCCHH--------------HHHHHHHHHHHCC--HHHEEEECCCC
Q ss_conf 8888999986258---74874374206877--------------8999999987214--01001114776
Q T0567 65 APQLNDFIALAQG---GTLVLSHPEHLTRE--------------QQYHLVQLQSQEH--RPFRLIGIGDT 115 (145)
Q Consensus 65 ~~~~~~~l~~a~g---GtL~l~ei~~L~~~--------------~Q~~L~~~l~~~~--~~~RiI~~s~~ 115 (145)
...+...|+.|.. .++||||+|.+-.. .-..|+..++.-. .++-+|++|+.
T Consensus 94 ~~~l~~~f~~a~~~~P~Il~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~vivIatTn~ 163 (254)
T 1ixz_A 94 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 163 (254)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 9999999999997699799997625447467898888757999999999999648687899899980799
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A*
Probab=99.28 E-value=8.4e-12 Score=82.60 Aligned_cols=124 Identities=16% Similarity=0.213 Sum_probs=81.8
Q ss_pred CCCCCCHHHHHHHHHHHH------HH----CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-------C
Q ss_conf 766589899999999998------61----479958987589988889999998621242678524125788-------9
Q T0567 2 ELIGRSEWINQYRRRLQQ------LS----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-------N 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~------~a----~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-------~ 64 (145)
++.|.....+.+++.+.- +. ..+.-+|++|+|||||+++|+++.. ....||+.++.+.. +
T Consensus 17 di~G~~~~k~~l~e~v~~l~~~~~~~~~g~~~p~g~ll~GppG~GKT~la~a~a~---~~~~~~~~~~~~~~~~~~~g~~ 93 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG---EANVPFFHISGSDFVELFVGVG 93 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH---HHTCCEEEEEGGGTTTCCTTHH
T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCCCEEEEEHHHHHHCCCCHH
T ss_conf 8629999999999999986699999876999996599979999988999999986---3088179988589655026678
Q ss_pred HHHHHHHHHHHC---CCEEEECCHHHCCHH-----------HH---HHHHHHHHH--CCHHHEEEECCCCCHH---HHHH
Q ss_conf 888899998625---874874374206877-----------89---999999872--1401001114776878---9987
Q T0567 65 APQLNDFIALAQ---GGTLVLSHPEHLTRE-----------QQ---YHLVQLQSQ--EHRPFRLIGIGDTSLV---ELAA 122 (145)
Q Consensus 65 ~~~~~~~l~~a~---gGtL~l~ei~~L~~~-----------~Q---~~L~~~l~~--~~~~~RiI~~s~~~l~---~l~~ 122 (145)
...+..+|++|. .-++||||||.+... .+ .+|+..|+. ...++-+|++|+.+-. .+..
T Consensus 94 ~~~ir~~f~~A~~~~p~iifiDeid~~~~~r~~~~~~~~~~~~~~~n~lL~~~Dg~~~~~~v~vi~aTN~~~~lD~AllR 173 (476)
T 2ce7_A 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLR 173 (476)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGS
T ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCC
T ss_conf 99999999999876997999964333245678989998559999999999983188877996999826997647974558
Q ss_pred CCCCCH
Q ss_conf 089765
Q T0567 123 SNHIIA 128 (145)
Q Consensus 123 ~~~~~~ 128 (145)
.|+|+.
T Consensus 174 pGRfd~ 179 (476)
T 2ce7_A 174 PGRFDK 179 (476)
T ss_dssp TTSSCE
T ss_pred CCCCCE
T ss_conf 987865
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=2.3e-11 Score=80.28 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=89.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC--CCCCCCCCEECCCCCCHH-HHH----HHHHH
Q ss_conf 76658989999999999861479958987589988889999998621--242678524125788988-889----99986
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG--RNAQGEFVYRELTPDNAP-QLN----DFIAL 74 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s--~~~~~~fv~~~~~~~~~~-~~~----~~l~~ 74 (145)
+++|+....+.+.+.++. ..-.+++|+|++||||+++|+++...- ......++.+++...... ... .+...
T Consensus 22 diig~~~~~~~L~~~i~~--~~~~hlLl~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 99 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKD--GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQK 99 (323)
T ss_dssp GCCSCTHHHHHHHHHHHS--CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 930949999999999977--999869988949998999999999986699765554312120357850268888764100
Q ss_pred ------HCCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEEEECCC
Q ss_conf ------2587487437420687789999999872140100111477687899870897656557554422650788
Q T0567 75 ------AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
Q Consensus 75 ------a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~iPpL 144 (145)
....++++||+|.++.+.|..|...++....++++|++++.. ..+.+.+..|... +.++|+
T Consensus 100 ~~~~~~~~~kiiiide~d~~~~~~~~~l~~~~e~~~~~~~~i~~~~~~-------~~i~~~l~sR~~~--i~~~~~ 166 (323)
T 1sxj_B 100 KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS-------NKIIEPLQSQCAI--LRYSKL 166 (323)
T ss_dssp CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG-------GGSCHHHHTTSEE--EECCCC
T ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCC-------CCCCCCCCCCHHH--CCCCCC
T ss_conf 124556513899983133331036788762034565431220124642-------3025000110110--011113
No 24
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A
Probab=99.26 E-value=1.9e-11 Score=80.70 Aligned_cols=132 Identities=14% Similarity=0.205 Sum_probs=83.9
Q ss_pred CCCCCCHHHHHHHHHHHHHH----------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------CC
Q ss_conf 76658989999999999861----------47995898758998888999999862124267852412578-------89
Q T0567 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------DN 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a----------~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~~ 64 (145)
+++|.....+.+++.+...- ....-|||+|++||||+++|+++... ...+|+.++|.. ..
T Consensus 19 di~G~~~~k~~l~~~i~~p~~~~~~~~~~~~~~~giLL~GppGtGKT~la~aiA~e---~~~~~~~v~~~~l~~~~~g~~ 95 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE---ANSTFFSVSSSDLVSKWMGES 95 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH---HTCEEEEEEHHHHHTTTGGGH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEEEEHHHHHHCCCCHH
T ss_conf 95489999999999999787598978379999980688798998799999999999---689857867899765455278
Q ss_pred HHHHHHHHHHH---CCCEEEECCHHHCCHHHH-----------HHHHHHHH---HCCHHHEEEECCCCCHHHHHHCCCCC
Q ss_conf 88889999862---587487437420687789-----------99999987---21401001114776878998708976
Q T0567 65 APQLNDFIALA---QGGTLVLSHPEHLTREQQ-----------YHLVQLQS---QEHRPFRLIGIGDTSLVELAASNHII 127 (145)
Q Consensus 65 ~~~~~~~l~~a---~gGtL~l~ei~~L~~~~Q-----------~~L~~~l~---~~~~~~RiI~~s~~~l~~l~~~~~~~ 127 (145)
...+..++..| ...++|+||+|.+..... ..+...+. ....++-+|++|+.+ ..+.
T Consensus 96 e~~l~~~f~~a~~~~p~IlfiDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivi~tTn~p-------~~ld 168 (322)
T 3eie_A 96 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP-------WQLD 168 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG-------GGSC
T ss_pred HHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC-------HHCC
T ss_conf 999999999999669965752024665530366654248999999999975112467865999727981-------1147
Q ss_pred HHHHHHHCCCEEEECCC
Q ss_conf 56557554422650788
Q T0567 128 AELYYCFAMTQIACLPL 144 (145)
Q Consensus 128 ~~L~~~ls~~~i~iPpL 144 (145)
+.|..||... |++|+.
T Consensus 169 ~al~rRf~~~-i~i~~P 184 (322)
T 3eie_A 169 SAIRRRFERR-IYIPLP 184 (322)
T ss_dssp HHHHHHCCEE-EECCCC
T ss_pred HHHHHHCCEE-EEECCC
T ss_conf 9999435279-886896
No 25
>1um8_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori 26695} SCOP: c.37.1.20
Probab=99.26 E-value=1.3e-10 Score=76.20 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHH---------HHHH-------HHHHCCCEEEECCHH
Q ss_conf 799589875899888899999986212426785241257889888---------8999-------986258748743742
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQ---------LNDF-------IALAQGGTLVLSHPE 86 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~---------~~~~-------l~~a~gGtL~l~ei~ 86 (145)
...++|+.|++|+|||.+|+.+... .+.||+.+||+..+... +.++ ..++..|++|+||++
T Consensus 71 ~~~niLflGPTGvGKTElAk~LA~~---~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iV~lDEie 147 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH---LDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEID 147 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH---TTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH---CCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 8754365389987579999999852---5477555201013456310112330244443100568998543620000566
Q ss_pred HCC--------------HHHHHHHHHHHHHC
Q ss_conf 068--------------77899999998721
Q T0567 87 HLT--------------REQQYHLVQLQSQE 103 (145)
Q Consensus 87 ~L~--------------~~~Q~~L~~~l~~~ 103 (145)
.+. +..|..|++.++..
T Consensus 148 K~~~~~~~~~~~~dva~~~Vq~~LLqile~~ 178 (376)
T 1um8_A 148 KISRLSENRSITRDVSGEGVQQALLKIVEGS 178 (376)
T ss_dssp GC--------------CHHHHHHHHHHHHCC
T ss_pred HHCCCCCCCCCCHHHCCHHHHHHHHHHCCCC
T ss_conf 5302334555331000448898613230587
No 26
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus}
Probab=99.24 E-value=2.1e-11 Score=80.43 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=75.5
Q ss_pred CCCCCCHHHHHHHHHHHHH-------H----CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------C
Q ss_conf 7665898999999999986-------1----47995898758998888999999862124267852412578-------8
Q T0567 2 ELIGRSEWINQYRRRLQQL-------S----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------D 63 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~-------a----~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~ 63 (145)
++.|-....+++++.+... . .....|||+|++||||+++|+++... ...+|+.++|.. .
T Consensus 16 di~Gl~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~la~aia~~---~~~~~~~i~~~~l~~~~~~~ 92 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE---CQANFISIKGPELLTMWFGE 92 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH---TTCEEEEECHHHHHHHHHTT
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEEEEHHHHCCCCCCH
T ss_conf 947879999999999999875999998679998863788799999878999999999---39977998879951364660
Q ss_pred CHHHHHHHHHHHC---CCEEEECCHHHCCHH--------------HHHHHHHHHHHC--CHHHEEEECCCC
Q ss_conf 9888899998625---874874374206877--------------899999998721--401001114776
Q T0567 64 NAPQLNDFIALAQ---GGTLVLSHPEHLTRE--------------QQYHLVQLQSQE--HRPFRLIGIGDT 115 (145)
Q Consensus 64 ~~~~~~~~l~~a~---gGtL~l~ei~~L~~~--------------~Q~~L~~~l~~~--~~~~RiI~~s~~ 115 (145)
....+..++..|. ...+||||+|.+-.. ....|+..++.. ..++-+|++|+.
T Consensus 93 ~~~~~~~~f~~a~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~vivIatTN~ 163 (301)
T 3cf0_A 93 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 68999999999997499159853200345557877788606999999999999746466699899981599
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.23 E-value=3.9e-11 Score=79.04 Aligned_cols=111 Identities=20% Similarity=0.307 Sum_probs=73.2
Q ss_pred CCCCCCHHHHHHHHHHHHH-------H----CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-------
Q ss_conf 7665898999999999986-------1----479958987589988889999998621242678524125788-------
Q T0567 2 ELIGRSEWINQYRRRLQQL-------S----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD------- 63 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~-------a----~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~------- 63 (145)
+++|.....+.+++.+... . .....||++|++||||+++|+++... ...+|+.++|...
T Consensus 18 di~G~~~~k~~l~e~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~~iA~e---~~~~~~~i~~s~l~~~~~g~ 94 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE---TNATFIRVVGSELVKKFIGE 94 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH---TTCEEEEEEGGGGCCCSTTH
T ss_pred HHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEEEEHHHHCCCCCCH
T ss_conf 842799999999999999850999998679998863688789999801999999998---29977999889960034636
Q ss_pred CHHHHHHHHHHH---CCCEEEECCHHHCC-----------HHHHH---HHHHHHHH--CCHHHEEEECCCC
Q ss_conf 988889999862---58748743742068-----------77899---99999872--1401001114776
Q T0567 64 NAPQLNDFIALA---QGGTLVLSHPEHLT-----------REQQY---HLVQLQSQ--EHRPFRLIGIGDT 115 (145)
Q Consensus 64 ~~~~~~~~l~~a---~gGtL~l~ei~~L~-----------~~~Q~---~L~~~l~~--~~~~~RiI~~s~~ 115 (145)
+...+..++..| +..++||||+|.+. ...+. .++..++. ...++.+|++|+.
T Consensus 95 ~~~~l~~~f~~a~~~~p~Il~iDeid~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~v~vIatTN~ 165 (285)
T 3h4m_A 95 GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR 165 (285)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred HHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 59999999999997099189835201343246889998768999999999997507678899899980799
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.23 E-value=4.8e-11 Score=78.56 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCCCCCHHHHHHHHHHHHHH----------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-------C
Q ss_conf 76658989999999999861----------479958987589988889999998621242678524125788-------9
Q T0567 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-------N 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a----------~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-------~ 64 (145)
++.|....-+++++.+..+. ..+..+|++|+|||||+++|++|... ...+|+.++|... +
T Consensus 7 di~G~~~~k~~l~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~~g~~ 83 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE---AQVPFLAMAGAEFVEVIGGLG 83 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH---HTCCEEEEETTTTSSSSTTHH
T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHC---CCCCEEEEEHHHHCCCCCCHH
T ss_conf 86289999999999999987999999759999971588689989862789998724---598569988799525767713
Q ss_pred HHHHHHHHHHH---CCCEEEECCHHHCCHHHH---------------HHHHHHHHHCC--HHHEEEECCCCC
Q ss_conf 88889999862---587487437420687789---------------99999987214--010011147768
Q T0567 65 APQLNDFIALA---QGGTLVLSHPEHLTREQQ---------------YHLVQLQSQEH--RPFRLIGIGDTS 116 (145)
Q Consensus 65 ~~~~~~~l~~a---~gGtL~l~ei~~L~~~~Q---------------~~L~~~l~~~~--~~~RiI~~s~~~ 116 (145)
...+..+|+.| ....+||||+|.+-.... ..|+..++... .++-+|++|+..
T Consensus 84 ~~~i~~~f~~A~~~~p~il~ide~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~viatTn~~ 155 (262)
T 2qz4_A 84 AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA 155 (262)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 999999999999709907972322455303567777775369999999999980376887997999958993
No 29
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.23 E-value=1e-10 Score=76.75 Aligned_cols=133 Identities=11% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCCCCCHHHHHHHHHHHHHH-------CCC---CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------CC
Q ss_conf 76658989999999999861-------479---95898758998888999999862124267852412578-------89
Q T0567 2 ELIGRSEWINQYRRRLQQLS-------ETD---IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------DN 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a-------~~~---~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~~ 64 (145)
++.|...+.+.+++.+...- ... .-|||+|+|||||+++|+++..... ..+|+.++|.. ..
T Consensus 13 di~Gl~~~k~~l~e~i~~p~~~~~~~~~~~~p~~gvLL~GPpGtGKT~lakaiA~e~~--~~~~~~v~~~~l~~~~~g~~ 90 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSKWLGES 90 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCSSCCSC
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCEEEEEHHHHHHCCCHHH
T ss_conf 9639899999999999998609998737999998068879899988999999998707--88424656799866322199
Q ss_pred HHHHHHHHHHH---CCCEEEECCHHHCCHH-------HHHH----HHHHHHH---CCHHHEEEECCCCCHHHHHHCCCCC
Q ss_conf 88889999862---5874874374206877-------8999----9999872---1401001114776878998708976
Q T0567 65 APQLNDFIALA---QGGTLVLSHPEHLTRE-------QQYH----LVQLQSQ---EHRPFRLIGIGDTSLVELAASNHII 127 (145)
Q Consensus 65 ~~~~~~~l~~a---~gGtL~l~ei~~L~~~-------~Q~~----L~~~l~~---~~~~~RiI~~s~~~l~~l~~~~~~~ 127 (145)
...+..+++.+ ....+|+||+|.+... .... ++..+.. ....+-+|++|+.+ ..++
T Consensus 91 e~~l~~lf~~a~~~~p~ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~atn~p-------~~ld 163 (322)
T 1xwi_A 91 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP-------WVLD 163 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT-------TTSC
T ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCH-------HHHH
T ss_conf 999999999998749864763020455531334222210012026888875204578866997347887-------7768
Q ss_pred HHHHHHHCCCEEEECCC
Q ss_conf 56557554422650788
Q T0567 128 AELYYCFAMTQIACLPL 144 (145)
Q Consensus 128 ~~L~~~ls~~~i~iPpL 144 (145)
+.|..|+... |++|+.
T Consensus 164 ~al~rRf~~~-i~i~~P 179 (322)
T 1xwi_A 164 SAIRRRFEKR-IYIPLP 179 (322)
T ss_dssp HHHHHTCCEE-EECCCC
T ss_pred HHHHCCCCEE-ECCCCC
T ss_conf 9983850025-246777
No 30
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.22 E-value=5.1e-11 Score=78.38 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=82.9
Q ss_pred CCCCCCHHHHHHHHHHHHHH------C----CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------CC
Q ss_conf 76658989999999999861------4----7995898758998888999999862124267852412578-------89
Q T0567 2 ELIGRSEWINQYRRRLQQLS------E----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------DN 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a------~----~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~~ 64 (145)
+++|...+.+++++.+...- . ...-|||+|+|||||+++|++|.. ....+|+.++|.. ..
T Consensus 52 DI~G~~~~k~~l~e~v~~pl~~~~~~~~~~~~~~giLL~GPPGtGKT~la~aiA~---e~~~~~~~v~~~~l~~~~~g~~ 128 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT---EANSTFFSVSSSDLVSKWMGES 128 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH---HHTCEEEEEEHHHHHSCC---C
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCCCCEEEEHHHHHCCCCCHH
T ss_conf 9707999999999999988749897736999997168879999977799999999---8199854754888624554379
Q ss_pred HHHHHHHHHHH---CCCEEEECCHHHCCHHH-----------HHHHHHHHH---HCCHHHEEEECCCCCHHHHHHCCCCC
Q ss_conf 88889999862---58748743742068778-----------999999987---21401001114776878998708976
Q T0567 65 APQLNDFIALA---QGGTLVLSHPEHLTREQ-----------QYHLVQLQS---QEHRPFRLIGIGDTSLVELAASNHII 127 (145)
Q Consensus 65 ~~~~~~~l~~a---~gGtL~l~ei~~L~~~~-----------Q~~L~~~l~---~~~~~~RiI~~s~~~l~~l~~~~~~~ 127 (145)
...+..++..+ ...++|+||+|.+-... ...++..+. ....++.+|++|+.. ..+.
T Consensus 129 e~~l~~~f~~a~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivI~tTn~~-------~~ld 201 (355)
T 2qp9_X 129 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP-------WQLD 201 (355)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG-------GGSC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH-------HHHH
T ss_conf 999999999999749948985031023211567565404889988999987311357875999727983-------6500
Q ss_pred HHHHHHHCCCEEEECCC
Q ss_conf 56557554422650788
Q T0567 128 AELYYCFAMTQIACLPL 144 (145)
Q Consensus 128 ~~L~~~ls~~~i~iPpL 144 (145)
+.|..||... |++|+.
T Consensus 202 ~al~rRfd~~-i~i~~P 217 (355)
T 2qp9_X 202 SAIRRRFERR-IYIPLP 217 (355)
T ss_dssp HHHHHTCCEE-EECCCC
T ss_pred HHHHHHHHEE-EEECCC
T ss_conf 9998351378-861896
No 31
>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=8.9e-11 Score=77.09 Aligned_cols=127 Identities=6% Similarity=0.059 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC--CCCCC-CCEECCCCC--CHHHHHHHHHHH----
Q ss_conf 589899999999998614799589875899888899999986212--42678-524125788--988889999862----
Q T0567 5 GRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR--NAQGE-FVYRELTPD--NAPQLNDFIALA---- 75 (145)
Q Consensus 5 G~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~--~~~~~-fv~~~~~~~--~~~~~~~~l~~a---- 75 (145)
|+...++.+++.++. ....+++++||+||||+++|..+-..-. ....| |+++++... ...++.++.+.+
T Consensus 1 g~~~~~~~l~~~i~~--~~~~~~lf~G~~g~gk~~~~~~l~~~~~~~~~~hpD~~~i~~e~~~I~Id~IR~l~~~~~~~~ 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEK--SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHT--CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 967799999999966--998659888999988799999999987344567997799707767799899999999985355
Q ss_pred -CCC--EEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEEE
Q ss_conf -587--48743742068778999999987214010011147768789987089765655755442265
Q T0567 76 -QGG--TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIA 140 (145)
Q Consensus 76 -~gG--tL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~ 140 (145)
.|+ +++||++|.|..+.|..|+..++..+.++++|.+|+.. ..+.+-...|...+.+.
T Consensus 79 ~~~~~KIvIIdead~m~~~AaNALLKtLEEPp~~t~fILit~~~-------~kil~TI~SRCq~i~~~ 139 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW-------HYLLPTIKSRVFRVVVN 139 (305)
T ss_dssp SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG-------GGSCHHHHTTSEEEECC
T ss_pred CCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCC-------CCCCCCCCCCEEEEECC
T ss_conf 35896699995755439999999999862899772687741561-------03677804613788669
No 32
>2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.22 E-value=8.6e-12 Score=82.56 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHH-HHHH----------
Q ss_conf 66589899999999998614799589875899888899999986212426785241257889888-8999----------
Q T0567 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQ-LNDF---------- 71 (145)
Q Consensus 3 liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~-~~~~---------- 71 (145)
+||+...++.+.-.+ ..+.+|||+|+|||||+++||++-.. ...+|+.++|....... ....
T Consensus 29 IiGqe~~k~~ll~al----~~~~~vLL~GppGtGKT~lar~lA~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (331)
T 2r44_A 29 VVGQKYMINRLLIGI----CTGGHILLEGVPGLAKTLSVNTLAKT---MDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNF 101 (331)
T ss_dssp CCSCHHHHHHHHHHH----HHTCCEEEESCCCHHHHHHHHHHHHH---TTCCEEEEECCTTCCHHHHHEEEEEETTTTEE
T ss_pred EECCHHHHHHHHHHH----HCCCCEEEECCCCCCHHHHHHHHHHH---CCCCCEEECCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 447799999999999----76997899889997499999999975---68753110367666654421100011134532
Q ss_pred ---HHHHCCCEEEECCHHHCCHHHHHHHHHHHHHCC
Q ss_conf ---986258748743742068778999999987214
Q T0567 72 ---IALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH 104 (145)
Q Consensus 72 ---l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~ 104 (145)
-.....+++|+||++.++...+..+++.++...
T Consensus 102 ~~~~~~~~~~v~~iDEi~~~~~~~~~~ll~~~~~~~ 137 (331)
T 2r44_A 102 EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQ 137 (331)
T ss_dssp EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSE
T ss_pred CCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHE
T ss_conf 222331123655456855568777767765310101
No 33
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.21 E-value=5.7e-11 Score=78.13 Aligned_cols=124 Identities=16% Similarity=0.239 Sum_probs=80.0
Q ss_pred CCCCCCHHHHHHHHHHHHH----------HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------CC
Q ss_conf 7665898999999999986----------147995898758998888999999862124267852412578-------89
Q T0567 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------DN 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~----------a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~~ 64 (145)
++.|....-+++.+.+.-+ +..+.-||++|+|||||+++|+++.. ....||+.+++.. ..
T Consensus 32 di~G~~~~k~~l~e~v~~l~~~~~~~~~g~~~p~g~Ll~GppG~GKT~~a~a~a~---e~~~~~~~~~~~~~~~~~~g~~ 108 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEMFVGVG 108 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH---HTTCCEEEEEGGGGTSSCTTHH
T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCCCEEEEEHHHHHHCCCCHH
T ss_conf 8539899999999999986699999975999997589889899858999999997---5189469977699875133015
Q ss_pred HHHHHHHHHHHCC---CEEEECCHHHCCH-----------HHH---HHHHHHHHH--CCHHHEEEECCCCCHH---HHHH
Q ss_conf 8888999986258---7487437420687-----------789---999999872--1401001114776878---9987
Q T0567 65 APQLNDFIALAQG---GTLVLSHPEHLTR-----------EQQ---YHLVQLQSQ--EHRPFRLIGIGDTSLV---ELAA 122 (145)
Q Consensus 65 ~~~~~~~l~~a~g---GtL~l~ei~~L~~-----------~~Q---~~L~~~l~~--~~~~~RiI~~s~~~l~---~l~~ 122 (145)
...+..+|++|.. .++||||||.+-. +.+ ..|+..|+. ...++-+|++|+..-. .+..
T Consensus 109 ~~~~r~~f~~a~~~~p~i~fiDEiD~~~~~r~~~~~~~~~~~~~~~n~lL~~ldg~~~~~~v~vi~atN~~~~lD~Al~R 188 (499)
T 2dhr_A 109 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLR 188 (499)
T ss_dssp HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCC
T ss_conf 67999999987424987999962001144578888887479999999999995288888996999806994437864558
Q ss_pred CCCCCH
Q ss_conf 089765
Q T0567 123 SNHIIA 128 (145)
Q Consensus 123 ~~~~~~ 128 (145)
.|+|+.
T Consensus 189 pGRfd~ 194 (499)
T 2dhr_A 189 PGRFDR 194 (499)
T ss_dssp TTSSCC
T ss_pred CCCCCE
T ss_conf 986763
No 34
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A*
Probab=99.21 E-value=1.7e-10 Score=75.56 Aligned_cols=138 Identities=14% Similarity=0.199 Sum_probs=84.8
Q ss_pred CCCCCHHH--HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHH--------HHHHHH
Q ss_conf 66589899--99999999861479958987589988889999998621242678524125788988--------889999
Q T0567 3 LIGRSEWI--NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAP--------QLNDFI 72 (145)
Q Consensus 3 liG~S~~m--~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~--------~~~~~l 72 (145)
++|.+..+ ..+++-++.....-.|++|+|++|+||++++.+|...........+.+++...... ...++.
T Consensus 14 v~g~~N~~A~~a~~~i~~~~g~~~npl~l~G~~G~GKTHLl~Ai~~~~~~~~~~v~y~~~~~~~~~~~~a~~~~~~~~~~ 93 (324)
T 1l8q_A 14 IVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFR 93 (324)
T ss_dssp CCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHH
T ss_conf 78874899999999998674766761898889999899999999999985499759944999999999998648789999
Q ss_pred HHH-CCCEEEECCHHHC--CHHHHHHHHHHHHHC-CHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCC-EEEECC
Q ss_conf 862-5874874374206--877899999998721-4010011147768789987089765655755442-265078
Q T0567 73 ALA-QGGTLVLSHPEHL--TREQQYHLVQLQSQE-HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT-QIACLP 143 (145)
Q Consensus 73 ~~a-~gGtL~l~ei~~L--~~~~Q~~L~~~l~~~-~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~-~i~iPp 143 (145)
+.. ....|+||+++.+ .+..|..|..++..- ..+-++|.++..+|.++ +.+.++|..||+.. .+.++|
T Consensus 94 ~~~~~~dlLiiDDi~~l~~~~~~qe~lf~l~n~~~~~~k~iiits~~~P~~l---~~~~~~L~SRl~~Gl~v~I~P 166 (324)
T 1l8q_A 94 NMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL---DGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp HHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC---TTSCHHHHHHHHTSEEEECCC
T ss_pred HHHHCCCEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH---CCCCHHHHHHHHCCEEEEECC
T ss_conf 8851256400030665415557899999999999870996898569885654---132267887864765899688
No 35
>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A
Probab=99.20 E-value=4e-11 Score=78.99 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=68.7
Q ss_pred CCCCCHHHHHHHHHH----HHHH----CCC-----CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHH-
Q ss_conf 665898999999999----9861----479-----95898758998888999999862124267852412578898888-
Q T0567 3 LIGRSEWINQYRRRL----QQLS----ETD-----IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQL- 68 (145)
Q Consensus 3 liG~S~~m~~l~~~i----~~~a----~~~-----~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~- 68 (145)
+||+.++.+.+-..+ +++. ..+ ..+|+.||+|+|||.+|+.+...- ..+|+.++|...+.+..
T Consensus 17 ViGQ~~A~~~va~av~~~~~r~~~~~~~~~~~~~~~~~Lf~GPTGvGKTelAk~LA~~l---~~~f~~~d~~~~~~~gyv 93 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADATTLTEAGYV 93 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHTTCHHH
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCC
T ss_conf 62918999999999999998862677788875676537998999888999999999997---757666642101467655
Q ss_pred --------HHH-------HHHHCCCEEEECCHHHCCH--------------HHHHHHHHHHHH
Q ss_conf --------999-------9862587487437420687--------------789999999872
Q T0567 69 --------NDF-------IALAQGGTLVLSHPEHLTR--------------EQQYHLVQLQSQ 102 (145)
Q Consensus 69 --------~~~-------l~~a~gGtL~l~ei~~L~~--------------~~Q~~L~~~l~~ 102 (145)
.++ ..++..++++|||||...+ ..|..|+++++.
T Consensus 94 g~~~~~~l~~~~~~~~~~v~~~~~~vVllDEIEKa~~~~~~~~~~~dv~~~~V~~~LLqile~ 156 (363)
T 3hws_A 94 GEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp HHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHCHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 663257888887644066986667758885286651235688755556651699987767436
No 36
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=1.2e-10 Score=76.40 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=86.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCEECCCCCCHHH-----HHHHHH
Q ss_conf 766589899999999998614799589875899888899999986212---426785241257889888-----899998
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR---NAQGEFVYRELTPDNAPQ-----LNDFIA 73 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~---~~~~~fv~~~~~~~~~~~-----~~~~l~ 73 (145)
+++|+....+.+...++. ..-.+++|+|++||||+++|+++-..-. .....+..+++....... ...+..
T Consensus 38 diig~~~~~~~L~~~l~~--~~~p~lLl~Gp~G~GKTtla~~la~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKS--ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TCCSCCTTHHHHHHHTTC--TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 804979999999999976--998739988989999899999999851455544554022012233585156788887776
Q ss_pred H------------H---CCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCE
Q ss_conf 6------------2---587487437420687789999999872140100111477687899870897656557554422
Q T0567 74 L------------A---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQ 138 (145)
Q Consensus 74 ~------------a---~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~ 138 (145)
. . ..-++++||+|.|+.+.|..|...++....+.++|.+++.. ..+.+.+..|...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~kviiiDe~d~l~~~~~~~l~~~~e~~~~~~~~i~~~~~~-------~~i~~~i~sr~~~-- 186 (353)
T 1sxj_D 116 LTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV-------TRIIDPLASQCSK-- 186 (353)
T ss_dssp SCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG-------GGSCHHHHHHSEE--
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC-------HHHHHHHHHHHHH--
T ss_conf 5343245666650466770799996012057888998863024687321211125630-------4425888655555--
Q ss_pred EEECCC
Q ss_conf 650788
Q T0567 139 IACLPL 144 (145)
Q Consensus 139 i~iPpL 144 (145)
+.++|+
T Consensus 187 i~f~~~ 192 (353)
T 1sxj_D 187 FRFKAL 192 (353)
T ss_dssp EECCCC
T ss_pred HHHCCC
T ss_conf 322010
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=4.2e-11 Score=78.85 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=81.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC--CC------------------------CCCCC
Q ss_conf 76658989999999999861479958987589988889999998621--24------------------------26785
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG--RN------------------------AQGEF 55 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s--~~------------------------~~~~f 55 (145)
+++|+....+.+...++. .....+++|+||+||||+++|+++-..- +. ....+
T Consensus 15 di~g~e~~~~~L~~~i~~-~~~~~~lLl~GP~G~GKTt~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQ-PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GCCSCHHHHHHHHTTTTC-TTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HCCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCE
T ss_conf 816819999999999967-9987869888979998999999999986598632123442222355541333212468870
Q ss_pred CEECCCC---CCHHHHHHHHHHH-----------------CCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCC
Q ss_conf 2412578---8988889999862-----------------5874874374206877899999998721401001114776
Q T0567 56 VYRELTP---DNAPQLNDFIALA-----------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
Q Consensus 56 v~~~~~~---~~~~~~~~~l~~a-----------------~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~ 115 (145)
..++... .......+..... ..-+++|||+|.++.+.|..|...++....++++|.+++.
T Consensus 94 ~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiide~d~l~~~~~~~l~~~le~~~~~~~~il~~~~ 173 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred EEEEHHHCCCCCCCEEEEHHHHHHHHHCCCHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCC
T ss_conf 46501013467763120012223222100012114655677418987323335511455665411224222320133001
Q ss_pred CHHHHHHCCCCCHHHHHHHCCCEEEECCCC
Q ss_conf 878998708976565575544226507889
Q T0567 116 SLVELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 116 ~l~~l~~~~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
. ..+.+.+..|.. .+.+||++
T Consensus 174 ~-------~~i~~~i~sR~~--~i~~~~~~ 194 (354)
T 1sxj_E 174 M-------SPIIAPIKSQCL--LIRCPAPS 194 (354)
T ss_dssp S-------CSSCHHHHTTSE--EEECCCCC
T ss_pred C-------CCCCCCCCCCCH--HHCCCCCC
T ss_conf 1-------135553001112--21025331
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.19 E-value=1.6e-10 Score=75.69 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=82.7
Q ss_pred CCCCHHHHHHHHHHHHHHCC---CCCEEEECCCCCCHHHHHHHHHHHC--CCCCCCCCEECCCCCCHHH--------HHH
Q ss_conf 65898999999999986147---9958987589988889999998621--2426785241257889888--------899
Q T0567 4 IGRSEWINQYRRRLQQLSET---DIAVWLYGAPGTGRMTGARYLHQFG--RNAQGEFVYRELTPDNAPQ--------LND 70 (145)
Q Consensus 4 iG~S~~m~~l~~~i~~~a~~---~~pvli~Ge~GtGK~~~A~~iH~~s--~~~~~~fv~~~~~~~~~~~--------~~~ 70 (145)
+|.|.. ...+.++.++.. -.|++|+|++||||+++|++|.... .....+++.++|......- ...
T Consensus 109 ~g~~n~--~A~~aa~~va~~~g~~npllLyGppGtGKThLa~AIa~~l~~~~~~~~v~~v~~~~~~~~~~~a~~~~~~~~ 186 (440)
T 2z4s_A 109 VGPGNS--FAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE 186 (440)
T ss_dssp CCTTTH--HHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCHH--HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCHHH
T ss_conf 276589--999999999857798880899899998589999999999997089976999426999999999998275389
Q ss_pred HHHHH--CCCEEEECCHHHCC--HHHHHHHHHHHHHCC-HHHEEEECCCCCHHHHHHCCCCCHHHHHHHCC-CEEEECCC
Q ss_conf 99862--58748743742068--778999999987214-01001114776878998708976565575544-22650788
Q T0567 71 FIALA--QGGTLVLSHPEHLT--REQQYHLVQLQSQEH-RPFRLIGIGDTSLVELAASNHIIAELYYCFAM-TQIACLPL 144 (145)
Q Consensus 71 ~l~~a--~gGtL~l~ei~~L~--~~~Q~~L~~~l~~~~-~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~-~~i~iPpL 144 (145)
+.... ....|++||++.++ ...|..++..+..-. ....+|.+++.++.. -..+.+.|..|+.. ..+.++|.
T Consensus 187 f~~~~~~~~~lLliDdi~~~~~~~~~q~~l~~~~~~l~~~~k~iiits~~~p~~---l~~l~~~L~SR~~~gl~i~i~~P 263 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQK---LSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGG---CSSCCHHHHHHHHSSBCCBCCCC
T ss_pred HHHHHHCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC---CCHHCHHHHCCCCCCEEEECCCC
T ss_conf 999863588867515310203898999999999986664388599996899863---10006665133023348847897
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.18 E-value=1.1e-11 Score=81.90 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=61.9
Q ss_pred CCCCCCHHHHHHHHHHHHHH----------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-------C
Q ss_conf 76658989999999999861----------479958987589988889999998621242678524125788-------9
Q T0567 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-------N 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a----------~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-------~ 64 (145)
+++|.....+++++.+..+. .....+||+|+|||||+++|+++-.. ...+|+.++|... +
T Consensus 12 dI~G~~~~k~~l~~~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~~la~~---~~~~~~~i~~~~l~~~~~g~~ 88 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE---AHVPFFSMGGSSFIEMFVGLG 88 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH---HTCCCCCCCSCTTTTSCSSSC
T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHH---CCCCEEEEEHHHHHHCCCCHH
T ss_conf 97365999999999999987999999769998982476679878822899999976---399779988589414256366
Q ss_pred HHHHHHHHHHH---CCCEEEECCHHHCCHH
Q ss_conf 88889999862---5874874374206877
Q T0567 65 APQLNDFIALA---QGGTLVLSHPEHLTRE 91 (145)
Q Consensus 65 ~~~~~~~l~~a---~gGtL~l~ei~~L~~~ 91 (145)
...+..+|..| ...++||||+|.+-..
T Consensus 89 ~~~i~~~f~~a~~~~p~Il~iDeid~l~~~ 118 (268)
T 2r62_A 89 ASRVRDLFETAKKQAPSIIFIDEIDAIGKS 118 (268)
T ss_dssp SSSSSTTHHHHHHSCSCEEEESCGGGTTC-
T ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHHCC
T ss_conf 999999999999709959999677776155
No 40
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.18 E-value=7.7e-11 Score=77.44 Aligned_cols=112 Identities=14% Similarity=0.225 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHH-------H----CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------C
Q ss_conf 7665898999999999986-------1----47995898758998888999999862124267852412578-------8
Q T0567 2 ELIGRSEWINQYRRRLQQL-------S----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------D 63 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~-------a----~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~ 63 (145)
++.|-....+++++.+... . ..+.-||++|+|||||+++|+++.. ....+|+.++|.. .
T Consensus 205 digGl~~~~~~l~e~i~~pl~~pe~~~~~g~~~p~giLL~GPPGTGKT~laraiA~---e~~~~~~~i~~~~l~s~~~ge 281 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN---ETGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH---TTTCEEEEEEHHHHSSSSTTH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHCCCEEEEEHHHHHHCCCCH
T ss_conf 65879999999999976547797886337889987531117998758999999999---819988998657865223317
Q ss_pred CHHHHHHHHHHH---CCCEEEECCHHHCCHH-------HH----HHHHHHHHHC--CHHHEEEECCCCC
Q ss_conf 988889999862---5874874374206877-------89----9999998721--4010011147768
Q T0567 64 NAPQLNDFIALA---QGGTLVLSHPEHLTRE-------QQ----YHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
Q Consensus 64 ~~~~~~~~l~~a---~gGtL~l~ei~~L~~~-------~Q----~~L~~~l~~~--~~~~RiI~~s~~~ 116 (145)
+...+..+++.| ...+|||||+|.+-+. .. ..|+..++.- ..++-+|++|+..
T Consensus 282 se~~lr~~f~~A~~~~PsIlfIDEiD~l~~~r~~~~~~~~~~vv~~LL~~md~~~~~~~VvvI~aTn~~ 350 (806)
T 1ypw_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
T ss_conf 899999999999966996798746523222457888649999999999984244556876899477991
No 41
>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} SCOP: b.52.2.3 c.37.1.20 d.31.1.1 PDB: 1s3s_A* 2pjh_B
Probab=99.16 E-value=2.2e-10 Score=75.01 Aligned_cols=112 Identities=14% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCCCCCHHHHHHHHHHHH-------HH----CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-------
Q ss_conf 766589899999999998-------61----479958987589988889999998621242678524125788-------
Q T0567 2 ELIGRSEWINQYRRRLQQ-------LS----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD------- 63 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~-------~a----~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~------- 63 (145)
++.|.....+++++.+.. +. .....|||+|++||||+++|+++.... ..+|+.++|...
T Consensus 205 digGl~~~~~~l~e~i~~pl~~p~~~~~~g~~~p~gvLL~GPpGtGKT~laralA~e~---~~~~~~v~~~~l~~~~~ge 281 (458)
T 1e32_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE 281 (458)
T ss_dssp GCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHT---TCEEEEECHHHHTTSCTTH
T ss_pred HHHCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHHHHHCCHH
T ss_conf 8608999999999999978329999963799988447988989999899999999996---9968999868952400107
Q ss_pred CHHHHHHHHHHH---CCCEEEECCHHHCCHHHH-----------HHHHHHHHHC--CHHHEEEECCCCC
Q ss_conf 988889999862---587487437420687789-----------9999998721--4010011147768
Q T0567 64 NAPQLNDFIALA---QGGTLVLSHPEHLTREQQ-----------YHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
Q Consensus 64 ~~~~~~~~l~~a---~gGtL~l~ei~~L~~~~Q-----------~~L~~~l~~~--~~~~RiI~~s~~~ 116 (145)
+...+..+|+.| ...++|+||+|.+..... ..++..+..- ..++-+|++|+..
T Consensus 282 ~e~~l~~iF~~A~~~~p~IifiDeiD~l~~~r~~~~~~~~~~~~~~ll~~~~~~~~~~~VivI~tTn~~ 350 (458)
T 1e32_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (458)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCG
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 799999999999754991587442331025666666228899999999997640156876999834980
No 42
>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B}
Probab=99.12 E-value=2.8e-10 Score=74.46 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=72.9
Q ss_pred HHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHH-CCCEEEECCHHHC
Q ss_conf 999999986147--9958987589988889999998621242678524125788988889999862-5874874374206
Q T0567 12 QYRRRLQQLSET--DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALA-QGGTLVLSHPEHL 88 (145)
Q Consensus 12 ~l~~~i~~~a~~--~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a-~gGtL~l~ei~~L 88 (145)
.+...+++++.. ..|++|+||+|||||++|++|+....... ..+...+..........+.+.+ +...+++|+++.+
T Consensus 38 ~~~~~l~~~~~~~~~~~lll~GPpGtGKT~LA~aia~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~id~i~~~ 116 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE-RRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAV 116 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGG
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC-CEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHC
T ss_conf 9999999998579988589888999549999999998735677-447764047788799999999870363000012105
Q ss_pred C--HHHHHHHHHHHHH--CCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCC-CEEEECCC
Q ss_conf 8--7789999999872--1401001114776878998708976565575544-22650788
Q T0567 89 T--REQQYHLVQLQSQ--EHRPFRLIGIGDTSLVELAASNHIIAELYYCFAM-TQIACLPL 144 (145)
Q Consensus 89 ~--~~~Q~~L~~~l~~--~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~-~~i~iPpL 144 (145)
. +..+..+.+.+.. ......++.+++.++..+ ....+++..++.. ..+.++|+
T Consensus 117 ~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~p~~l---~~~~~~l~sr~~~~~~~~~~~p 174 (242)
T 3bos_A 117 AGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA---GFVLPDLVSRMHWGLTYQLQPM 174 (242)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT---TCCCHHHHHHHHHSEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH---CCCCCCCCHHHHHCEEECCCCC
T ss_conf 665679999999999987437752787458980564---3434343201331101035688
No 43
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=6.8e-10 Score=72.34 Aligned_cols=142 Identities=19% Similarity=0.165 Sum_probs=90.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHC----CCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCCCCEECCCCCCHHH--H------
Q ss_conf 766589899999999998614----799589875899888899999986-212426785241257889888--8------
Q T0567 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQ-FGRNAQGEFVYRELTPDNAPQ--L------ 68 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~----~~~pvli~Ge~GtGK~~~A~~iH~-~s~~~~~~fv~~~~~~~~~~~--~------ 68 (145)
+|+|+...++++.+.+..... ...+++|+|+||||||++|+.+-. ........|+.++|....... .
T Consensus 18 ~l~gR~~e~~~i~~~l~~~~~~~~~~~~~~ll~GppGtGKT~la~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARS 97 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHH
T ss_conf 88983999999999999998577999981799859988199999999999776368856884020025689999999987
Q ss_pred ------------HHHH-------HH-HCCCEEEECCHHHCCHHHHHHHHHHHHHC--CHHHEEEECCCCCHHHHHHCCCC
Q ss_conf ------------9999-------86-25874874374206877899999998721--40100111477687899870897
Q T0567 69 ------------NDFI-------AL-AQGGTLVLSHPEHLTREQQYHLVQLQSQE--HRPFRLIGIGDTSLVELAASNHI 126 (145)
Q Consensus 69 ------------~~~l-------~~-a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~--~~~~RiI~~s~~~l~~l~~~~~~ 126 (145)
..++ .. .....+++++++.+....+..+..+.... ....+++.....+..... ..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~--~~~ 175 (389)
T 1fnn_A 98 LNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL--NNL 175 (389)
T ss_dssp TTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH--HTS
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH--HHC
T ss_conf 133112235419999999998765405750575202331243200246666676531456248873143101344--302
Q ss_pred CHHHHHHHCCCEEEECCCC
Q ss_conf 6565575544226507889
Q T0567 127 IAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 127 ~~~L~~~ls~~~i~iPpL~ 145 (145)
.+.+..++....+..||++
T Consensus 176 ~~~~~sr~~~~~~~~~~~~ 194 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYT 194 (389)
T ss_dssp CHHHHHHHTTCEEECCCCB
T ss_pred CCHHHHHCCCCEEECCCCC
T ss_conf 5056651676245169999
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.07 E-value=1.3e-09 Score=70.90 Aligned_cols=133 Identities=11% Similarity=0.129 Sum_probs=79.6
Q ss_pred CCCCCCHHHHHHHHHHHHHH-------CCC---CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCC-------
Q ss_conf 76658989999999999861-------479---9589875899888899999986212426785241257889-------
Q T0567 2 ELIGRSEWINQYRRRLQQLS-------ETD---IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN------- 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a-------~~~---~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~------- 64 (145)
++.|...+-+.+.+.+...- ... .-|||+|+|||||+++|++|..... ..+|+.++|....
T Consensus 135 di~Gl~~~K~~l~e~v~~p~~~~~~~~~~~~p~~giLL~GPPGtGKT~lAkaiA~e~~--~~~~~~v~~~~l~~~~~g~~ 212 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSKWLGES 212 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---------C
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCHH
T ss_conf 9447999999999999978749897558999987137779999878899999999864--78438973143322232449
Q ss_pred HHHHHHHHHHH---CCCEEEECCHHHCCHH--------HHHHHHHHH---H---HCCHHHEEEECCCCCHHHHHHCCCCC
Q ss_conf 88889999862---5874874374206877--------899999998---7---21401001114776878998708976
Q T0567 65 APQLNDFIALA---QGGTLVLSHPEHLTRE--------QQYHLVQLQ---S---QEHRPFRLIGIGDTSLVELAASNHII 127 (145)
Q Consensus 65 ~~~~~~~l~~a---~gGtL~l~ei~~L~~~--------~Q~~L~~~l---~---~~~~~~RiI~~s~~~l~~l~~~~~~~ 127 (145)
...+..++..+ ...++|+||+|.+... .......++ . .....+-+|++|+.+ . .++
T Consensus 213 e~~~~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~tTN~p-~------~ld 285 (444)
T 2zan_A 213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP-W------VLD 285 (444)
T ss_dssp CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG-G------GSC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCH-H------HHH
T ss_conf 999999999998708752111023343115545542035665455787763124579965897306886-7------757
Q ss_pred HHHHHHHCCCEEEECCC
Q ss_conf 56557554422650788
Q T0567 128 AELYYCFAMTQIACLPL 144 (145)
Q Consensus 128 ~~L~~~ls~~~i~iPpL 144 (145)
+.|..||... |.+|+.
T Consensus 286 ~al~rRFd~~-I~i~~P 301 (444)
T 2zan_A 286 SAIRRRFEKR-IYIPLP 301 (444)
T ss_dssp HHHHTTCCEE-EECCCC
T ss_pred HHHHHHHHHH-HHCCCC
T ss_conf 9999898983-221688
No 45
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=5.1e-10 Score=73.01 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=73.7
Q ss_pred CCCCCCHHHHHHHHHHHHHH---------------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCC-H
Q ss_conf 76658989999999999861---------------4799589875899888899999986212426785241257889-8
Q T0567 2 ELIGRSEWINQYRRRLQQLS---------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN-A 65 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a---------------~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~-~ 65 (145)
+++|+....+++.+-++..- ....++||+|+|||||+++|++|...- ...++++|+.... .
T Consensus 40 dliGn~~~i~~L~~wL~~w~~~~~~~~~~~~~~~~~~~~~lLL~GPpG~GKTtlak~lAkel---g~~vieiNaSd~r~~ 116 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSK 116 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCH
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH---CCCEEEEECCCCCCH
T ss_conf 95297999999999998624202333320002458887779998999715999999999985---998899958655577
Q ss_pred HHHHHHHHHH---------------------CCCEEEECCHHHCCHHHHHHHHHHHHHC-CHHHEEEECCCCC
Q ss_conf 8889999862---------------------5874874374206877899999998721-4010011147768
Q T0567 66 PQLNDFIALA---------------------QGGTLVLSHPEHLTREQQYHLVQLQSQE-HRPFRLIGIGDTS 116 (145)
Q Consensus 66 ~~~~~~l~~a---------------------~gGtL~l~ei~~L~~~~Q~~L~~~l~~~-~~~~RiI~~s~~~ 116 (145)
..+...+... ..-++++||+|.++...|..+..+++.. .....+|++++..
T Consensus 117 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iIiiDEiD~l~~~~~~~l~~l~~~~~~~~~piI~i~n~~ 189 (516)
T 1sxj_A 117 TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNER 189 (516)
T ss_dssp HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9999999988631156777777654201257843999853410344103678999986312354168885266
No 46
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.05 E-value=2.1e-10 Score=75.11 Aligned_cols=132 Identities=19% Similarity=0.244 Sum_probs=82.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC--CCCCCCCCEECCCCCCHH-----HHHHHHHH
Q ss_conf 76658989999999999861479958987589988889999998621--242678524125788988-----88999986
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG--RNAQGEFVYRELTPDNAP-----QLNDFIAL 74 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s--~~~~~~fv~~~~~~~~~~-----~~~~~l~~ 74 (145)
+++|+....+++.+.++. ..-.+++|+|++||||+++|+.+-..- ......+..++|...... ....+...
T Consensus 18 ~iig~~~~~~~l~~~i~~--~~~~~~Ll~Gp~G~GKTtla~~lak~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (319)
T ss_dssp GSCSCHHHHHHHHTTTTT--TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHC
T ss_conf 901919999999999977--998779988979999999999999872545456514676455668867531112454320
Q ss_pred H-----CCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEEEECCC
Q ss_conf 2-----587487437420687789999999872140100111477687899870897656557554422650788
Q T0567 75 A-----QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
Q Consensus 75 a-----~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i~iPpL 144 (145)
. ..-+++++|++.++.+.|..|+..++.....+++|.+++..- ...+.+..|. ..+.++|+
T Consensus 96 ~~~~~~~~~~iiide~~~~~~~~~~~l~~~~e~~~~~~~~il~~~~~~-------~i~~~i~sr~--~~i~~~~~ 161 (319)
T 2chq_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS-------RIIEPIQSRC--AVFRFKPV 161 (319)
T ss_dssp CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG-------GSCHHHHTTC--EEEECCCC
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHH-------HCCHHHHHHC--EEECCCCC
T ss_conf 003788518999705430148899987300224554433687228645-------4627786002--02000257
No 47
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.05 E-value=8.9e-10 Score=71.71 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=70.3
Q ss_pred CCCCCCHHHHHHHHHHH-------HHHC----CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCC------
Q ss_conf 76658989999999999-------8614----799589875899888899999986212426785241257889------
Q T0567 2 ELIGRSEWINQYRRRLQ-------QLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN------ 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~-------~~a~----~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~------ 64 (145)
+++|.....+++++.+. .+.. ....|||+|++||||+++|+++-.. ...+++.++|....
T Consensus 11 dI~G~e~~k~~l~e~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~aia~~---~~~~~~~i~~~~~~~~~~~~ 87 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE---SGLNFISVKGPELLNMYVGE 87 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEEETTTTCSSTTHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH---HCCCCEECCCCEEEECCCCH
T ss_conf 965999999999999999974999998779998873688798999899999999987---06871322301001005664
Q ss_pred -HHHHHHHHHHHC---CCEEEECCHHHCCHHHH-----------HHHHHHHHHCC--HHHEEEECCCCC
Q ss_conf -888899998625---87487437420687789-----------99999987214--010011147768
Q T0567 65 -APQLNDFIALAQ---GGTLVLSHPEHLTREQQ-----------YHLVQLQSQEH--RPFRLIGIGDTS 116 (145)
Q Consensus 65 -~~~~~~~l~~a~---gGtL~l~ei~~L~~~~Q-----------~~L~~~l~~~~--~~~RiI~~s~~~ 116 (145)
...+..+|..|. ..++|+||+|.+-.... ..++..+.... .++-+|++|+..
T Consensus 88 ~~~~i~~~f~~a~~~~p~il~id~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ilvIatTn~~ 156 (274)
T 2x8a_A 88 SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRP 156 (274)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 889999999999971994885011355403455555621253288999986333567897999807993
No 48
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.04 E-value=1.7e-10 Score=75.56 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=77.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHH-------------HHHHHHHCCCEEEECCHHHCC
Q ss_conf 7995898758998888999999862124267852412578898888-------------999986258748743742068
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQL-------------NDFIALAQGGTLVLSHPEHLT 89 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~-------------~~~l~~a~gGtL~l~ei~~L~ 89 (145)
.+.+|||.|+|||||+.+++++|..+++.. |+ .....+...+ .+.+-.|++|++|+||++.++
T Consensus 238 g~ihILLvGDPGtgKSqLlk~v~~laPr~v--~t--sG~~ss~aGLTaav~~dg~~~leaGaLvLAd~Gv~cIDEfdkm~ 313 (506)
T 3f8t_A 238 ERLHVLLAGYPVVCSEILHHVLDHLAPRGV--YV--DLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAP 313 (506)
T ss_dssp GCCCEEEESCHHHHHHHHHHHHHHTCSSEE--EE--EGGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCC
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCE--EE--CCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCEEEEECCCCCC
T ss_conf 854699978997238699999998586202--42--25445444553147634765233770542688679981103599
Q ss_pred HHHHHHHHHHHHHCCH---------HHEEEECCCCCHH----HHHHCCCCCHHHHHHHCCC
Q ss_conf 7789999999872140---------1001114776878----9987089765655755442
Q T0567 90 REQQYHLVQLQSQEHR---------PFRLIGIGDTSLV----ELAASNHIIAELYYCFAMT 137 (145)
Q Consensus 90 ~~~Q~~L~~~l~~~~~---------~~RiI~~s~~~l~----~l~~~~~~~~~L~~~ls~~ 137 (145)
...|..|.+.|+++.. .+.+||+++-... .+..+-.+.+.|..||.-+
T Consensus 314 ~~d~~aL~EaMEqq~VsIak~tl~aR~sVlAAaNP~~~~~~~~~~~n~~l~~~LLsRFDLi 374 (506)
T 3f8t_A 314 EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLI 374 (506)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEE
T ss_pred HHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCHHHCCCCCEE
T ss_conf 8999999988774928987240467506999988521477778433156640001332147
No 49
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.04 E-value=3e-10 Score=74.28 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=78.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHH
Q ss_conf 47995898758998888999999862124267852412578898888999986258748743742068778999999987
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQS 101 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a~gGtL~l~ei~~L~~~~Q~~L~~~l~ 101 (145)
..+.+++|+|++|+||+.+++++...........+.+++......+ .+ ...-.++||+++.+..+.|..|..++.
T Consensus 34 ~~~~~i~l~G~~GsGKTHLl~A~~~~~~~~~~~~~yl~~~~~~~~~---~~--~~~~~l~IDDi~~~~~~~e~~LF~l~N 108 (149)
T 2kjq_A 34 KHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD---AA--FEAEYLAVDQVEKLGNEEQALLFSIFN 108 (149)
T ss_dssp CCCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG---GG--GGCSEEEEESTTCCCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHH---HH--HHCCCEECCCHHHHHHHHHHHHHHHHH
T ss_conf 7898799989999989999999999998289948998412554588---87--621643313276661568999999999
Q ss_pred HC--CHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCCC-EEEECC
Q ss_conf 21--4010011147768789987089765655755442-265078
Q T0567 102 QE--HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT-QIACLP 143 (145)
Q Consensus 102 ~~--~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~-~i~iPp 143 (145)
.- ....++|+++..++..+ .+.+||..||+.. ...|.|
T Consensus 109 ~~~~~~~~~Li~ss~~pp~~l----~~l~DL~SRL~~glv~~i~P 149 (149)
T 2kjq_A 109 RFRNSGKGFLLLGSEYTPQQL----VIREDLRTRMAYCLVYEVKP 149 (149)
T ss_dssp HHHHHTCCEEEEEESSCTTTS----SCCHHHHHHGGGSEECCCCC
T ss_pred HHHHCCCCEEEEECCCCHHHC----CCCHHHHHHHHCCCEEEEEC
T ss_conf 999849918999689995666----74778887985896078649
No 50
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens}
Probab=99.01 E-value=9.3e-10 Score=71.61 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=77.7
Q ss_pred CCCCCCHHHHHHHHHHHHH----------HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCC-------
Q ss_conf 7665898999999999986----------14799589875899888899999986212426785241257889-------
Q T0567 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN------- 64 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~----------a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~------- 64 (145)
++.|...+.+++++.+..- .....-||++|+|||||+++|++|... ...+|+.++|....
T Consensus 85 DI~Gl~~~k~~l~e~v~~pl~~p~~f~~~~~~p~GvLL~GPPGTGKT~lAkaiA~e---~g~~~~~i~~~~l~s~~~ge~ 161 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ---SGATFFSISASSLTSKWVGEG 161 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH---TTCEEEEEEGGGGCCSSTTHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHC---CCCCEEEEEHHHHHCCCCCCH
T ss_conf 87089999999999999997599989646999834888797998799999999732---289759955889514446506
Q ss_pred HHHHHHHHHHH---CCCEEEECCHHHCCHHHH-----------HHHHHHHH----HCCHHHEEEECCCCCHHHHHHCCCC
Q ss_conf 88889999862---587487437420687789-----------99999987----2140100111477687899870897
Q T0567 65 APQLNDFIALA---QGGTLVLSHPEHLTREQQ-----------YHLVQLQS----QEHRPFRLIGIGDTSLVELAASNHI 126 (145)
Q Consensus 65 ~~~~~~~l~~a---~gGtL~l~ei~~L~~~~Q-----------~~L~~~l~----~~~~~~RiI~~s~~~l~~l~~~~~~ 126 (145)
...+..++..+ ....+|+|+++.+-...- ..++..+. ....++-+|++|+.. . .+
T Consensus 162 ~~~ir~lf~~a~~~~p~ii~ideid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlvI~aTN~~-~------~l 234 (357)
T 3d8b_A 162 EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP-Q------EI 234 (357)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG-G------GB
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC-C------CC
T ss_conf 9999999999997387532004443311456777775236677788999876025789878999815982-1------06
Q ss_pred CHHHHHHHCCCEEEECCC
Q ss_conf 656557554422650788
Q T0567 127 IAELYYCFAMTQIACLPL 144 (145)
Q Consensus 127 ~~~L~~~ls~~~i~iPpL 144 (145)
++.|..++. ..|.+|+.
T Consensus 235 D~Al~Rrf~-~~I~~~~P 251 (357)
T 3d8b_A 235 DEAARRRLV-KRLYIPLP 251 (357)
T ss_dssp CHHHHTTCC-EEEECCCC
T ss_pred CHHHHCCCE-EEEEECCC
T ss_conf 698858540-69995698
No 51
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.01 E-value=8.4e-10 Score=71.86 Aligned_cols=140 Identities=17% Similarity=0.292 Sum_probs=85.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHCCC---CCCCCCEECCCCCCHH----------
Q ss_conf 7665898999999999986147--995898758998888999999862124---2678524125788988----------
Q T0567 2 ELIGRSEWINQYRRRLQQLSET--DIAVWLYGAPGTGRMTGARYLHQFGRN---AQGEFVYRELTPDNAP---------- 66 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~--~~pvli~Ge~GtGK~~~A~~iH~~s~~---~~~~fv~~~~~~~~~~---------- 66 (145)
+++|+-..++++.+.++.+-.. ..+++|+|+||||||++|+++...-.. ..-.++.++|......
T Consensus 21 ~l~gRe~e~~~l~~~L~~~~~~~~~~~~li~GppGtGKT~l~~~~a~~l~~~~~~~~~~v~in~~~~~~~~~~~~~~~~~ 100 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLES 100 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHH
T ss_conf 89980999999999999998479998289988998819999999999977544898507983114405417789988764
Q ss_pred --------------HHHHHHH---H-HCCCEEEECCHHHCCHHHH----HHHHHHHH-HCCHHHEEEECCCCCHHHHHHC
Q ss_conf --------------8899998---6-2587487437420687789----99999987-2140100111477687899870
Q T0567 67 --------------QLNDFIA---L-AQGGTLVLSHPEHLTREQQ----YHLVQLQS-QEHRPFRLIGIGDTSLVELAAS 123 (145)
Q Consensus 67 --------------~~~~~l~---~-a~gGtL~l~ei~~L~~~~Q----~~L~~~l~-~~~~~~RiI~~s~~~l~~l~~~ 123 (145)
.+...+. . .....+++||++.+....+ ..++.+.. ....++.+|++++.. .. .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilDe~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~--~~--~ 176 (386)
T 2qby_A 101 LDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV--KF--V 176 (386)
T ss_dssp TSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG--GG--G
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCH--HH--H
T ss_conf 0221230266799999999998875078631432233012001124699999986777527866999843762--34--5
Q ss_pred CCCCHHHHHHHCCCEEEECCCC
Q ss_conf 8976565575544226507889
Q T0567 124 NHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 124 ~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
..+.+.+..++....+..+|.+
T Consensus 177 ~~~~~~~~sr~~~~~i~~~p~~ 198 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYN 198 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCC
T ss_pred HHHCCHHHHHCCCCCCCCCCCC
T ss_conf 5533024420456541579999
No 52
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.97 E-value=1.9e-10 Score=75.27 Aligned_cols=112 Identities=14% Similarity=0.280 Sum_probs=71.8
Q ss_pred CCCCCCHHHHHHHHHHHH-------HHC----CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------C
Q ss_conf 766589899999999998-------614----7995898758998888999999862124267852412578-------8
Q T0567 2 ELIGRSEWINQYRRRLQQ-------LSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------D 63 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~-------~a~----~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------~ 63 (145)
++.|....-+.+.+.+.. +.. ...-+|++|+|||||+++|+++...+ ..+|+.+++.. +
T Consensus 478 di~gl~~~k~~l~~~i~~p~~~~~~~~~~g~~~~~giLl~GPpGtGKT~la~a~A~e~---~~~fi~v~~~~l~~~~vGe 554 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE 554 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTCCTTT
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHC---CCCEEEECCCHHHHHCCCH
T ss_conf 8368698998899999535456899985699888517876799998616778777515---8845873131123220257
Q ss_pred CHHHHHHHHHHH---CCCEEEECCHHHCCHH----------HHHHHH-HHHHH-----CCHHHEEEECCCCC
Q ss_conf 988889999862---5874874374206877----------899999-99872-----14010011147768
Q T0567 64 NAPQLNDFIALA---QGGTLVLSHPEHLTRE----------QQYHLV-QLQSQ-----EHRPFRLIGIGDTS 116 (145)
Q Consensus 64 ~~~~~~~~l~~a---~gGtL~l~ei~~L~~~----------~Q~~L~-~~l~~-----~~~~~RiI~~s~~~ 116 (145)
++..+..+|+.| ...++||||+|.+-.. ...+++ +++.. ...++-+|++|+.+
T Consensus 555 se~~ir~~f~~Ar~~~p~iifiDEidsl~~~R~~~~~~~~~~~~rv~~~lL~e~dg~~~~~~V~vi~aTNrp 626 (806)
T 1ypw_A 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp SSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSC
T ss_pred HHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 999999987778764995053113566650368777898659999999999996287888999999817981
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.94 E-value=1.5e-09 Score=70.51 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=85.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHHHC----C--CCCCCCCEECCCCCCHH-HH-H--
Q ss_conf 76658989999999999861479--958987589988889999998621----2--42678524125788988-88-9--
Q T0567 2 ELIGRSEWINQYRRRLQQLSETD--IAVWLYGAPGTGRMTGARYLHQFG----R--NAQGEFVYRELTPDNAP-QL-N-- 69 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~--~pvli~Ge~GtGK~~~A~~iH~~s----~--~~~~~fv~~~~~~~~~~-~~-~-- 69 (145)
+++|+...++++.+.++.+...+ ..++|+|++|||||++|+.+...- . ...-.++.+||...... .. .
T Consensus 20 ~l~gRe~e~~~i~~~l~~~i~~~~~~~~li~G~pGtGKT~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i 99 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI 99 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99980999999999999997189998289987997809999999999976551234677408997432124307899999
Q ss_pred --------------------HHHHHHC--C--CEEEECCHHHCCHH--HHH---HHHHHHHHCCH--HHEEEECCCCCHH
Q ss_conf --------------------9998625--8--74874374206877--899---99999872140--1001114776878
Q T0567 70 --------------------DFIALAQ--G--GTLVLSHPEHLTRE--QQY---HLVQLQSQEHR--PFRLIGIGDTSLV 118 (145)
Q Consensus 70 --------------------~~l~~a~--g--GtL~l~ei~~L~~~--~Q~---~L~~~l~~~~~--~~RiI~~s~~~l~ 118 (145)
..+.... . -.+++||++.+... .+. .+..+...... .+.+|++++...
T Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iide~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~- 178 (387)
T 2v1u_A 100 AEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG- 178 (387)
T ss_dssp HHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST-
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHH-
T ss_conf 9975211044652068999999864331045303430034330244542279999987445540377336886240244-
Q ss_pred HHHHCCCCCHHHHHHHCCCEEEECCCC
Q ss_conf 998708976565575544226507889
Q T0567 119 ELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 119 ~l~~~~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
....+.+.+..|+....+..||.+
T Consensus 179 ---~~~~~~~~l~sr~~~~~i~~~p~~ 202 (387)
T 2v1u_A 179 ---FVENLEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp ---TSSSSCHHHHTTTTSEECCBCCCC
T ss_pred ---HHHHCCCHHHCCCCCCCCCCCCCC
T ss_conf ---444149423224665423679999
No 54
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.93 E-value=7.4e-09 Score=66.78 Aligned_cols=136 Identities=15% Similarity=0.095 Sum_probs=87.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC-------CCCCCCCEECCCCC-----CHHHHH
Q ss_conf 766589899999999998614799589875899888899999986212-------42678524125788-----988889
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-------NAQGEFVYRELTPD-----NAPQLN 69 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~-------~~~~~fv~~~~~~~-----~~~~~~ 69 (145)
++||+...++++.+-+.+ ....+++|.||+|+||+.+++.+...=. -.+..++.+|.... ...+|+
T Consensus 23 ~~igRd~Ei~~l~~iL~r--~~k~n~lLVG~pGvGKTaiv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAG~~~~G~~e 100 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFE 100 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEHHHHHCCCCCHHHHH
T ss_conf 874849999999999826--788995785588747299999999999948998777687699965899872787302799
Q ss_pred H----HHHHH----CCCEEEECCHHHCCHH---------HHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHH
Q ss_conf 9----99862----5874874374206877---------89999999872140100111477687899870897656557
Q T0567 70 D----FIALA----QGGTLVLSHPEHLTRE---------QQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
Q Consensus 70 ~----~l~~a----~gGtL~l~ei~~L~~~---------~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~ 132 (145)
+ +++++ .+.+||+||++.|-.. .-.-|..++.. ..+++|++|+.+= ...--.-++.|-.
T Consensus 101 ~r~~~ii~e~~~~~~~iILfiDe~h~l~~~g~~~~~~~d~~~~Lkp~L~r--g~i~vI~atT~ee--y~~~~e~d~al~r 176 (187)
T 2p65_A 101 ERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSE--YRQFIEKDKALER 176 (187)
T ss_dssp HHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHH--HHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEECCHHH--HHHHHHCCHHHHH
T ss_conf 99999999998534783898430888734776677606599999999837--9846999479999--9999870889996
Q ss_pred HHCCCEEEECC
Q ss_conf 55442265078
Q T0567 133 CFAMTQIACLP 143 (145)
Q Consensus 133 ~ls~~~i~iPp 143 (145)
||..+.|.-|+
T Consensus 177 rF~~I~v~EPs 187 (187)
T 2p65_A 177 RFQQILVEQPS 187 (187)
T ss_dssp HEEEEECCSCC
T ss_pred CCCEEECCCCC
T ss_conf 49875366999
No 55
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.93 E-value=1.9e-08 Score=64.53 Aligned_cols=128 Identities=11% Similarity=0.094 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHCC-CC--CEEEECCCCCCHHHHHHHHHHH--CCCC--CCC-----------------CCEECCC--
Q ss_conf 8999999999986147-99--5898758998888999999862--1242--678-----------------5241257--
Q T0567 8 EWINQYRRRLQQLSET-DI--AVWLYGAPGTGRMTGARYLHQF--GRNA--QGE-----------------FVYRELT-- 61 (145)
Q Consensus 8 ~~m~~l~~~i~~~a~~-~~--pvli~Ge~GtGK~~~A~~iH~~--s~~~--~~~-----------------fv~~~~~-- 61 (145)
|..+...+++...-.. .. .+|++|++|+||+++|+++... +... ..+ |+.++-.
T Consensus 5 Pw~~~~~~~L~~~~~~~~l~Ha~L~~Gp~G~GK~~~a~~la~~l~c~~~~~~~~c~~c~~c~~~~~~~hpD~~~i~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCHHC
T ss_conf 12099999999999859966146568999976999999999997288999888887658999997589984154142210
Q ss_pred --CCCHHHHHHHHHHH-----CC--CEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHH
Q ss_conf --88988889999862-----58--7487437420687789999999872140100111477687899870897656557
Q T0567 62 --PDNAPQLNDFIALA-----QG--GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
Q Consensus 62 --~~~~~~~~~~l~~a-----~g--GtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~ 132 (145)
.....++.++.+.. .| -+++|||+|.|+.+.|..|+..++....++++|.+|+.. ..+.+-+..
T Consensus 85 ~~~i~i~~iR~l~~~~~~~~~~~~~kviii~~ad~m~~~a~naLLk~lEep~~~~~fil~~~~~-------~~ll~tI~S 157 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP-------ERLLATLRS 157 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG-------GGSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCH-------HHHHHHHHC
T ss_conf 4767899999999987654315881899975467641545678888874698542344424863-------212235744
Q ss_pred HHCCCEEEECCC
Q ss_conf 554422650788
Q T0567 133 CFAMTQIACLPL 144 (145)
Q Consensus 133 ~ls~~~i~iPpL 144 (145)
|.. .+.++|+
T Consensus 158 Rc~--~i~~~~~ 167 (334)
T 1a5t_A 158 RCR--LHYLAPP 167 (334)
T ss_dssp TSE--EEECCCC
T ss_pred CEE--EEECCCC
T ss_conf 325--5668999
No 56
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.92 E-value=8.6e-09 Score=66.42 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=61.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-------CHHHHHHHHHHHC-CCEEEECCHHHCCHHHHH--
Q ss_conf 958987589988889999998621242678524125788-------9888899998625-874874374206877899--
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-------NAPQLNDFIALAQ-GGTLVLSHPEHLTREQQY-- 94 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-------~~~~~~~~l~~a~-gGtL~l~ei~~L~~~~Q~-- 94 (145)
.++|++|||||||+.+|++++.... .+.+|+.+++... ....+..+|+++. ..++||||+|.+-.+...
T Consensus 124 g~~l~~GppG~GKT~la~~lA~~~g-~~~~~~~~~~~e~~~~~~G~~~~~vr~lf~~a~~~~i~~iDeid~i~~~~~~~~ 202 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-GKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNT 202 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-TTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CCCCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 7178778999879999999999865-899818978488775366747999999999988509299999999851568788
Q ss_pred ----------HHHHHHHH--CCHHHEEEECCCC
Q ss_conf ----------99999872--1401001114776
Q T0567 95 ----------HLVQLQSQ--EHRPFRLIGIGDT 115 (145)
Q Consensus 95 ----------~L~~~l~~--~~~~~RiI~~s~~ 115 (145)
.++..++. ...++.+|++|+.
T Consensus 203 ~~~~~~~~~~~ll~~~~~~~~~~~v~~i~atn~ 235 (331)
T 2vhj_A 203 TSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 887502335346665135335577079971686
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.91 E-value=1.6e-08 Score=64.94 Aligned_cols=136 Identities=18% Similarity=0.137 Sum_probs=86.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHC-------CCCCCCCCEECCCC----CC-HHHHH
Q ss_conf 76658989999999999861479958987589988889999998621-------24267852412578----89-88889
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG-------RNAQGEFVYRELTP----DN-APQLN 69 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s-------~~~~~~fv~~~~~~----~~-~~~~~ 69 (145)
+.||+.+.+.++.+-+.+ ....++++.||+|+||+.+++.+...= ...+..++.+|+.. .+ ..+|+
T Consensus 23 ~~igRd~Ei~~l~~iL~r--~~k~n~lLVG~pGVGKTaive~LA~ri~~~~vp~~L~~~~i~~ld~~~liAG~~~rg~~E 100 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHC--CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEEHHHHHCCCCCCHHHH
T ss_conf 872819999999999835--688994686079878289999999999807999888287689966999863687304579
Q ss_pred H----HHHHH--CCC--EEEECCHHHCCHHHH--------HHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHH
Q ss_conf 9----99862--587--487437420687789--------9999998721401001114776878998708976565575
Q T0567 70 D----FIALA--QGG--TLVLSHPEHLTREQQ--------YHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
Q Consensus 70 ~----~l~~a--~gG--tL~l~ei~~L~~~~Q--------~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ 133 (145)
+ ++++. ..| .||+||++.+-...+ .-|..++.. ..+++|++|+.+--. .--.-++.|..|
T Consensus 101 ~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~LkP~L~r--G~l~~IgatT~eey~--~~~e~d~al~rr 176 (195)
T 1jbk_A 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYR--QYIEKDAALERR 176 (195)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHH--HHTTTCHHHHTT
T ss_pred HHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCCCCCCHHHHHHHHHHC--CCCEEEECCCHHHHH--HHHHCCHHHHHC
T ss_conf 9999999998516997799843588885167777752389999999847--983387418999999--998708899970
Q ss_pred HCCCEEEECC
Q ss_conf 5442265078
Q T0567 134 FAMTQIACLP 143 (145)
Q Consensus 134 ls~~~i~iPp 143 (145)
|..+.|.=|+
T Consensus 177 F~~I~v~ep~ 186 (195)
T 1jbk_A 177 FQKVFVAEPS 186 (195)
T ss_dssp EEEEECCCCC
T ss_pred CCEEECCCCC
T ss_conf 8763558989
No 58
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens}
Probab=98.78 E-value=5.3e-09 Score=67.55 Aligned_cols=59 Identities=22% Similarity=0.170 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHH---HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 766589899999---999998614799589875899888899999986212426785241257
Q T0567 2 ELIGRSEWINQY---RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT 61 (145)
Q Consensus 2 ~liG~S~~m~~l---~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~ 61 (145)
.+||+..+.+.+ .+.++.-.-.+..+|++||||||||.+|++|..... .+.||+.++++
T Consensus 38 ~~~gq~~~~~~~~~~~~~~~~~~~~~k~iLl~GPpGtGKT~lAralAk~lg-~~~pF~~v~as 99 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGS 99 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGG
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCCCCCCCC
T ss_conf 563789999999999999982986687799989999889999999999848-99997678887
No 59
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.77 E-value=3.5e-08 Score=63.17 Aligned_cols=134 Identities=8% Similarity=-0.012 Sum_probs=77.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCC------CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC--------CHHHH
Q ss_conf 665898999999999986147------9958987589988889999998621242678524125788--------98888
Q T0567 3 LIGRSEWINQYRRRLQQLSET------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD--------NAPQL 68 (145)
Q Consensus 3 liG~S~~m~~l~~~i~~~a~~------~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~--------~~~~~ 68 (145)
+....+...+..+.+..++.. ..+++|+|++||||+++|.+|...-.....+...+++... .....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKT~La~ai~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (202)
T 2w58_A 27 VDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTM 106 (202)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCH
T ss_conf 04598528999999999999558676687489989998978999999999975425735899322689999999843864
Q ss_pred HHHHHH-HCCCEEEECCHH--HCCHHHHHHHH-HHHHHC-CHHHEEEECCCCCHHHHHHCCCC----------CHHHHHH
Q ss_conf 999986-258748743742--06877899999-998721-40100111477687899870897----------6565575
Q T0567 69 NDFIAL-AQGGTLVLSHPE--HLTREQQYHLV-QLQSQE-HRPFRLIGIGDTSLVELAASNHI----------IAELYYC 133 (145)
Q Consensus 69 ~~~l~~-a~gGtL~l~ei~--~L~~~~Q~~L~-~~l~~~-~~~~RiI~~s~~~l~~l~~~~~~----------~~~L~~~ 133 (145)
..+++. ..--.|+|||+. .++...+..++ .+++.. ..+.-+|.+|+.++.++...... -+.++.|
T Consensus 107 ~~~~~~~~~~dlLiiDDlg~~~~~~~~~~~l~~~ii~~r~~~~~~~iitSN~~~~~l~~~~~~~~~~~~~~~~~~ri~~R 186 (202)
T 2w58_A 107 NEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQRGEEEKVKAARIMER 186 (202)
T ss_dssp HHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHHSCCCC-----CCHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEECHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 54202330477547601202468889999999999998875348789966999799998741012476441179999999
Q ss_pred HCC
Q ss_conf 544
Q T0567 134 FAM 136 (145)
Q Consensus 134 ls~ 136 (145)
+..
T Consensus 187 l~~ 189 (202)
T 2w58_A 187 IRY 189 (202)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 997
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.77 E-value=2.1e-08 Score=64.39 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=72.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-----CCCEEEECCCCCCHHHHHHHHHHH-CCCCCCCCCEECCCCCCHH--------HH
Q ss_conf 665898999999999986147-----995898758998888999999862-1242678524125788988--------88
Q T0567 3 LIGRSEWINQYRRRLQQLSET-----DIAVWLYGAPGTGRMTGARYLHQF-GRNAQGEFVYRELTPDNAP--------QL 68 (145)
Q Consensus 3 liG~S~~m~~l~~~i~~~a~~-----~~pvli~Ge~GtGK~~~A~~iH~~-s~~~~~~fv~~~~~~~~~~--------~~ 68 (145)
++...+.......+++.++.. ...++|+|++||||+++|.++... ..+...+...+++...-.. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKT~La~ai~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 12 YHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp CCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCH
T ss_conf 24898689999999999998546234987999998999899999999998776059559997233166543356511507
Q ss_pred HHHHHH-HCCCEEEECCH--HHCCHHHHHHHHHHHHHCC-HHHEEEECCCCCHHHHH
Q ss_conf 999986-25874874374--2068778999999987214-01001114776878998
Q T0567 69 NDFIAL-AQGGTLVLSHP--EHLTREQQYHLVQLQSQEH-RPFRLIGIGDTSLVELA 121 (145)
Q Consensus 69 ~~~l~~-a~gGtL~l~ei--~~L~~~~Q~~L~~~l~~~~-~~~RiI~~s~~~l~~l~ 121 (145)
..+++. ...-.|+|||+ +.+++..|..|.++++... .+..+|++|+.+++++.
T Consensus 92 ~~~~~~l~~~~~liiDDig~~~~~~~~~~~l~~ii~~r~~~~~~~iitSN~~~~~~~ 148 (180)
T 3ec2_A 92 TKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQREE 148 (180)
T ss_dssp SHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC--
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf 999986167878998442566799999999999999999879969998789967853
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.70 E-value=5.1e-08 Score=62.30 Aligned_cols=138 Identities=16% Similarity=0.086 Sum_probs=85.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC-------CCCCCCCEECCCCCC-----HHHH-
Q ss_conf 766589899999999998614799589875899888899999986212-------426785241257889-----8888-
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-------NAQGEFVYRELTPDN-----APQL- 68 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~-------~~~~~fv~~~~~~~~-----~~~~- 68 (145)
++||+...+.++.+-+.+ ....++++.||+|+||+.+++.+...=. ..+..++.+|+..+- ..+|
T Consensus 187 p~igR~~Ei~~~~~iL~r--r~k~N~iLVGepGVGKTaivegLA~ri~~~~vp~~L~~~~i~~ld~~~liAg~~~rG~fE 264 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_dssp CCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred CCCCCHHHHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCEEECHHHHHCCCCCHHHHH
T ss_conf 654516999999999845--788872786577544899999999999753598666148515631877750464214589
Q ss_pred ---HHHHHHH---CCCEEEECCHHHCCH-----HHHHHHHHHHHHC--CHHHEEEECCCCCHHHHHHCCCCCHHHHHHHC
Q ss_conf ---9999862---587487437420687-----7899999998721--40100111477687899870897656557554
Q T0567 69 ---NDFIALA---QGGTLVLSHPEHLTR-----EQQYHLVQLQSQE--HRPFRLIGIGDTSLVELAASNHIIAELYYCFA 135 (145)
Q Consensus 69 ---~~~l~~a---~gGtL~l~ei~~L~~-----~~Q~~L~~~l~~~--~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls 135 (145)
..++... ..-+||+||++.+=. ....-+.+++..- ...+|+|++|+. ++...--.-++.|-.||.
T Consensus 265 erl~~i~~~~~~~~~~ILfiDeih~l~gag~~~~~~~d~an~LkP~Larg~l~~IgatT~--~ey~~~~e~d~al~rrF~ 342 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY--QEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECH--HHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCH--HHHHHHHHHCHHHHHCCE
T ss_conf 999999999862797699721577875378878763128998889863898549872799--999998724679884263
Q ss_pred CCEEEECC
Q ss_conf 42265078
Q T0567 136 MTQIACLP 143 (145)
Q Consensus 136 ~~~i~iPp 143 (145)
.+.|.=|+
T Consensus 343 ~I~V~Eps 350 (758)
T 1r6b_X 343 KIDITEPS 350 (758)
T ss_dssp EEECCCCC
T ss_pred EECCCCCC
T ss_conf 62079979
No 62
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.66 E-value=2.4e-07 Score=58.63 Aligned_cols=132 Identities=11% Similarity=0.107 Sum_probs=75.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHHHHCC--------CCCCCCCEECCCCCC--HHH--
Q ss_conf 766589899999999998614--799589875899888899999986212--------426785241257889--888--
Q T0567 2 ELIGRSEWINQYRRRLQQLSE--TDIAVWLYGAPGTGRMTGARYLHQFGR--------NAQGEFVYRELTPDN--APQ-- 67 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~--~~~pvli~Ge~GtGK~~~A~~iH~~s~--------~~~~~fv~~~~~~~~--~~~-- 67 (145)
+|+|+-..++++...++.+-. ...+++|+|+||||||++|+++...-. ...-.++.++|.... ...
T Consensus 21 ~~~~re~~~~~l~~~l~~~~~~~~~~~~Li~GppG~GKT~la~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCCCHHHHH
T ss_conf 26986999999999999998489986279984998819999999999974112554678870599843256336388999
Q ss_pred ---------------------HHHHHHH---HCCCEEEECCHHHCCHHHHHH-HHHHHHHCCHHHEEEECCCCCHHHHHH
Q ss_conf ---------------------8999986---258748743742068778999-999987214010011147768789987
Q T0567 68 ---------------------LNDFIAL---AQGGTLVLSHPEHLTREQQYH-LVQLQSQEHRPFRLIGIGDTSLVELAA 122 (145)
Q Consensus 68 ---------------------~~~~l~~---a~gGtL~l~ei~~L~~~~Q~~-L~~~l~~~~~~~RiI~~s~~~l~~l~~ 122 (145)
....+.. ....++++|+++.+....+.. ....+.....++.+|++++... .
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lde~d~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~ 176 (384)
T 2qby_B 101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN----V 176 (384)
T ss_dssp HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT----T
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHH----H
T ss_conf 999875314334300112999999986444126615762120133201003233322103676337999512023----0
Q ss_pred CCCCCHHHHHHHCCC
Q ss_conf 089765655755442
Q T0567 123 SNHIIAELYYCFAMT 137 (145)
Q Consensus 123 ~~~~~~~L~~~ls~~ 137 (145)
...+.+....++...
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (384)
T 2qby_B 177 RDYMEPRVLSSLGPS 191 (384)
T ss_dssp TTTSCHHHHHTCCCE
T ss_pred HHHHHHHHHHCCCCE
T ss_conf 676635666507835
No 63
>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.46 E-value=9e-07 Score=55.58 Aligned_cols=141 Identities=10% Similarity=0.050 Sum_probs=74.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCC---C-C---EEEECCCCCCHHHHHHHHHHHC------CCCCCCCCEECCCCCCHH-H
Q ss_conf 76658989999999999861479---9-5---8987589988889999998621------242678524125788988-8
Q T0567 2 ELIGRSEWINQYRRRLQQLSETD---I-A---VWLYGAPGTGRMTGARYLHQFG------RNAQGEFVYRELTPDNAP-Q 67 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~---~-p---vli~Ge~GtGK~~~A~~iH~~s------~~~~~~fv~~~~~~~~~~-~ 67 (145)
+|+|.-..++++...+....... . + ++|+|+||||||++|+++-..- ....-.++.+||...... .
T Consensus 23 ~l~~Re~ei~~l~~~~~~~~~~g~~~~~~~~i~~i~GppGtGKT~~ar~~~~~L~~~~~~~~~~~~~~~in~~~~~~~~~ 102 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYT 102 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHH
T ss_conf 88878999999999999999749999980189864689986899999999999876304557874289843323664378
Q ss_pred H-----------------------HHHHH----HHCCCEEEECCHHHCCHH------HHHHHHHHHHHC-----CHHHEE
Q ss_conf 8-----------------------99998----625874874374206877------899999998721-----401001
Q T0567 68 L-----------------------NDFIA----LAQGGTLVLSHPEHLTRE------QQYHLVQLQSQE-----HRPFRL 109 (145)
Q Consensus 68 ~-----------------------~~~l~----~a~gGtL~l~ei~~L~~~------~Q~~L~~~l~~~-----~~~~Ri 109 (145)
. ..+.. ......+++||+|.|... ....+.++.+.. ...+.+
T Consensus 103 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~ilDe~d~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 182 (412)
T 1w5s_A 103 ILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGF 182 (412)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEE
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 89886320145567556319999999998766523676306679888852355663067799999750433246775026
Q ss_pred EECCCCC-HHHHHHCCCCCHHHHHHHCCCEEEECCCC
Q ss_conf 1147768-78998708976565575544226507889
Q T0567 110 IGIGDTS-LVELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
Q Consensus 110 I~~s~~~-l~~l~~~~~~~~~L~~~ls~~~i~iPpL~ 145 (145)
|+.++.. ..+... ...+.+..++. ..+..||.+
T Consensus 183 i~i~~~~~~~~~~~--~~~~~~~~r~~-~~i~f~py~ 216 (412)
T 1w5s_A 183 LLVASDVRALSYMR--EKIPQVESQIG-FKLHLPAYK 216 (412)
T ss_dssp EEEEEETHHHHHHH--HHCHHHHTTCS-EEEECCCCC
T ss_pred EEECCCHHHHHHHH--HHHHHHHHCCC-EEEECCCCC
T ss_conf 75125246899998--86524543067-010059999
No 64
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.43 E-value=2.3e-07 Score=58.74 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHH----HHHH--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHH
Q ss_conf 665898999999999----9861--------4799589875899888899999986212426785241257889888
Q T0567 3 LIGRSEWINQYRRRL----QQLS--------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQ 67 (145)
Q Consensus 3 liG~S~~m~~l~~~i----~~~a--------~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~ 67 (145)
.||+..+-+.+--.+ ++.. -...+||+.||+|||||.+|+.|.. .-+-||+.+||+..++..
T Consensus 17 VIGQ~~AKk~lsVAvynhyrR~~~~~~~~~ei~ksNILliGPTG~GKT~LartLAk---~l~vPF~~~DAT~~TeaG 90 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK---LANAPFIKVEATKFTEVG 90 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH---HTTCCEEEEEGGGGC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECCCEEEEE
T ss_conf 13879999999999999998862476554545655279989999889999999999---858987985056103300
No 65
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.42 E-value=3.8e-07 Score=57.61 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHHC----C-CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-EECCC--------CCCHHH--
Q ss_conf 6589899999999998614----7-995898758998888999999862124267852-41257--------889888--
Q T0567 4 IGRSEWINQYRRRLQQLSE----T-DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT--------PDNAPQ-- 67 (145)
Q Consensus 4 iG~S~~m~~l~~~i~~~a~----~-~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv-~~~~~--------~~~~~~-- 67 (145)
...++......+.+..++. . ...++|+|++||||+.+|.+|...-....+..+ ..... ..+...
T Consensus 127 ~~~~~~~~~a~~~~~~~~~~~~~~~~~gl~l~G~~G~GKT~La~aia~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 206 (308)
T 2qgz_A 127 DVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVK 206 (308)
T ss_dssp CCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----C
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHCCCHH
T ss_conf 89998999999999999984766789828998999998899999999999873597338886127777789987314278
Q ss_pred -HHHHHHHHCCCEEEECCHHH--CCHHHHHHHHH-HHHHC-CHHHEEEECCCCCHHHHHHC
Q ss_conf -89999862587487437420--68778999999-98721-40100111477687899870
Q T0567 68 -LNDFIALAQGGTLVLSHPEH--LTREQQYHLVQ-LQSQE-HRPFRLIGIGDTSLVELAAS 123 (145)
Q Consensus 68 -~~~~l~~a~gGtL~l~ei~~--L~~~~Q~~L~~-~l~~~-~~~~RiI~~s~~~l~~l~~~ 123 (145)
....+. .--.|+|||+.. .+...+..++. +++.. ..+.-+|+||+.++.++...
T Consensus 207 ~~~~~~~--~~dlLiiDDlg~e~~t~~~~~~ll~~I~~~R~~~~~~tiiTSN~~~~~L~~~ 265 (308)
T 2qgz_A 207 EEIDAVK--NVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp CTTHHHH--TSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred HHHHHHH--CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf 8999874--1540320054221498899999999999999978994999738998999988
No 66
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima}
Probab=98.35 E-value=3.4e-07 Score=57.88 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHCC---CEE-EECC
Q ss_conf 999999999986147995898758998888999999862124267852412578898888999986258---748-7437
Q T0567 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQG---GTL-VLSH 84 (145)
Q Consensus 9 ~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a~g---GtL-~l~e 84 (145)
.+.++.+++...+.....+++.|+.||||...|+++|..|.+.+.||+.++|......-.+..+.-+.+ |.+ +..+
T Consensus 131 ~~~e~~~~~~~~~~~~ilv~~i~~~Gtgkg~~a~~ih~~s~r~~~P~Ia~~g~a~~edL~es~lfG~~ga~~g~~~~~~~ 210 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFRE 210 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 79999999997389878998535887887487999999860169798986897888999999977849999989984499
Q ss_pred HHHCCHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 42068778999999987214010011
Q T0567 85 PEHLTREQQYHLVQLQSQEHRPFRLI 110 (145)
Q Consensus 85 i~~L~~~~Q~~L~~~l~~~~~~~RiI 110 (145)
++. ..+.+++.+....+|+=
T Consensus 211 ---~~~---~e~~~~l~~~g~~vrl~ 230 (237)
T 3cwo_X 211 ---IDV---RELKEYLKKHGVNVRLE 230 (237)
T ss_dssp ---SCH---HHHHHHHHTTTCCCCEE
T ss_pred ---CCH---HHHHHHHHHCCCCEEEC
T ss_conf ---689---99999999789918826
No 67
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus}
Probab=98.29 E-value=2.9e-07 Score=58.20 Aligned_cols=115 Identities=15% Similarity=0.229 Sum_probs=76.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCC------CEECCCCCCHH---H---HHHHHHHHCCCEEEECCHHHCCH
Q ss_conf 799589875899888899999986212426785------24125788988---8---89999862587487437420687
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF------VYRELTPDNAP---Q---LNDFIALAQGGTLVLSHPEHLTR 90 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~f------v~~~~~~~~~~---~---~~~~l~~a~gGtL~l~ei~~L~~ 90 (145)
.+.++++.|++|+||+.+.++++..+++...-- .-..++..... . -.+.+..|.+|++|+||++.++.
T Consensus 326 ~~~~ill~Gd~~~~ks~ll~~~~~l~p~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~G~l~la~~Gv~~iDE~~~~~~ 405 (595)
T 3f9v_A 326 GDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD 405 (595)
T ss_dssp CSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEEECCCCCEEECCCHHHCCCCCCEEHHHHHHCCH
T ss_conf 74246652687530889999998757875521798777667630589842677445336401003456301003755277
Q ss_pred HHHHHHHHHHHHCCH-------------HHEEEECCCCCHH------HHHHCCCCCHHHHHHHCCC
Q ss_conf 789999999872140-------------1001114776878------9987089765655755442
Q T0567 91 EQQYHLVQLQSQEHR-------------PFRLIGIGDTSLV------ELAASNHIIAELYYCFAMT 137 (145)
Q Consensus 91 ~~Q~~L~~~l~~~~~-------------~~RiI~~s~~~l~------~l~~~~~~~~~L~~~ls~~ 137 (145)
..+..|.+.|+++.. ++-+||+++.... .......+.+.|..||...
T Consensus 406 ~~~~~L~eamE~~~isi~k~g~~~~l~~~~~iiaa~NP~~~~~~~~~~~~~~~~l~~~llsRFdl~ 471 (595)
T 3f9v_A 406 EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLI 471 (595)
T ss_dssp HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCC
T ss_pred HHHHHHHHHHHHEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHCCCCHHHHHHCCEE
T ss_conf 789999987651189972665178747976999963787556676657455237998898423736
No 68
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.07 E-value=1.4e-06 Score=54.53 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=42.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHH-H-------HHHH---------CCCEEEECC
Q ss_conf 4799589875899888899999986212426785241257889888899-9-------9862---------587487437
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLND-F-------IALA---------QGGTLVLSH 84 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~-~-------l~~a---------~gGtL~l~e 84 (145)
....-++++|||||||+++|+++-.. -.++|+.+|+.......+-+ . ++.+ ....+|+||
T Consensus 167 ~~~~~~~~~gp~~~gkt~~~~~~~~~---~~~~~l~in~s~~~s~~~l~~~~~~~~~~~dda~~~~~~~~~~~~~i~iDE 243 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN 243 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 86566999899998889999999998---599789997755234999875651177877888774343227998368760
Q ss_pred HHHCC
Q ss_conf 42068
Q T0567 85 PEHLT 89 (145)
Q Consensus 85 i~~L~ 89 (145)
+|.|.
T Consensus 244 iD~l~ 248 (377)
T 1svm_A 244 LDNLR 248 (377)
T ss_dssp HHTTH
T ss_pred HHHHC
T ss_conf 63212
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.02 E-value=3.7e-05 Score=46.88 Aligned_cols=135 Identities=20% Similarity=0.129 Sum_probs=82.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCC-------CCCCCCCEECCCCCCH---------
Q ss_conf 766589899999999998614799589875899888899999986212-------4267852412578898---------
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-------NAQGEFVYRELTPDNA--------- 65 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~-------~~~~~fv~~~~~~~~~--------- 65 (145)
+.+|+...+.++.+-+.+ ....+++|+||+|+||+.+++.+-..-. -....++.++....-.
T Consensus 171 p~igR~~Ei~~~~~iL~r--r~k~NpvLVGe~GvGKtaiv~~la~rI~~g~vp~~L~~~~i~~l~~~~L~ag~~~rge~E 248 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 248 (854)
T ss_dssp CCCSCHHHHHHHHHHHHC--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHH
T ss_pred CCCCCHHHHHHHHHHHHC--CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCEEEECHHHHHCCCCCHHHHH
T ss_conf 886954889999998742--578880797788741509999999999856999577377437622656743684104368
Q ss_pred HHHHHHHHHH---CC-CEEEECCHHHCCHHHHH----HHH----HHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHH
Q ss_conf 8889999862---58-74874374206877899----999----998721401001114776878998708976565575
Q T0567 66 PQLNDFIALA---QG-GTLVLSHPEHLTREQQY----HLV----QLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
Q Consensus 66 ~~~~~~l~~a---~g-GtL~l~ei~~L~~~~Q~----~L~----~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ 133 (145)
..+..++.+. .+ -.||+|+++.+-..... -+. .++.. ..+|+|++|+.+--... .. ++.|-.+
T Consensus 249 erl~~li~e~~~~~~~iIlfide~h~lvg~g~~~g~~daanlLKP~Lar--G~l~~IgaTT~eeYr~~--ek-dpALerr 323 (854)
T 1qvr_A 249 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREI--EK-DPALERR 323 (854)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHH--TT-CTTTCSC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCHHHHHHHHHHHCC--CCCEEEEECCHHHHHHH--CC-CCHHHHH
T ss_conf 9999999997517887799851200000467766635589875145306--86038884678898774--25-6056552
Q ss_pred HCCCEEEECC
Q ss_conf 5442265078
Q T0567 134 FAMTQIACLP 143 (145)
Q Consensus 134 ls~~~i~iPp 143 (145)
|..+.|..|+
T Consensus 324 Fq~I~V~EPs 333 (854)
T 1qvr_A 324 FQPVYVDEPT 333 (854)
T ss_dssp CCCEEECCCC
T ss_pred EEEEECCCCC
T ss_conf 0355338998
No 70
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.80 E-value=0.00023 Score=42.69 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 766589899999999998614799589875899888899999986
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+|+|+...++++.+.++. ...|+|+|++|+|||.+++.+..
T Consensus 13 ~f~GRe~el~~l~~~l~~----~~~v~i~G~~GiGKTsL~~~~~~ 53 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN----YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 588979999999999846----99799981999988999999998
No 71
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=97.76 E-value=0.00042 Score=41.26 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 766589899999999998614799589875899888899999986212426785241257
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT 61 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~ 61 (145)
+|+|+...++++.+. ....|+|+|++|+||+.+++.+-. +....++.++|.
T Consensus 14 ~f~GRe~el~~L~~~------~~~~v~i~G~~G~GKTsLl~~~~~---~~~~~~~~~~~~ 64 (357)
T 2fna_A 14 DFFDREKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGIN---ELNLPYIYLDLR 64 (357)
T ss_dssp GSCCCHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHH---HHTCCEEEEEGG
T ss_pred HCCCHHHHHHHHHHH------CCCEEEEECCCCCCHHHHHHHHHH---HCCCCEEEEEEE
T ss_conf 088979999999813------798799984999849999999999---769986999976
No 72
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.33 E-value=0.00085 Score=39.59 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 76658989999999999861479958987589988889999998
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
.+||+...+.++++.+.........|.|+|.+|+|||++|..+.
T Consensus 125 ~fvgR~~~~~~i~~~L~~~~~~~~~V~I~G~gG~GKTtLA~~~~ 168 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 87691999999999987128997579988998676999999999
No 73
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=0.00017 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.+|+|+|++||||+++|+.+...
T Consensus 2 r~I~itG~pG~GKTtLa~~l~~~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHH
T ss_conf 69999899987299999999999
No 74
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.20 E-value=0.00014 Score=43.72 Aligned_cols=90 Identities=19% Similarity=0.126 Sum_probs=47.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCH-----H------------H--------HHHHHHH--HCCC
Q ss_conf 5898758998888999999862124267852412578898-----8------------8--------8999986--2587
Q T0567 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNA-----P------------Q--------LNDFIAL--AQGG 78 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~-----~------------~--------~~~~l~~--a~gG 78 (145)
-|++.|+|||||+++|+.+.... ..+|+.++...... . . ....++. .++.
T Consensus 34 ~ill~G~PGsGKTtla~~l~~~~---~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSLGY 110 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCCCEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99987999988899999999973---468669715999987033267777506888998788899999999998751157
Q ss_pred EEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHH
Q ss_conf 487437420687789999999872140100111477687899
Q T0567 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVEL 120 (145)
Q Consensus 79 tL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l 120 (145)
.+.+|....-... -..+.+.+......+.+++.. .+++..
T Consensus 111 ~~i~d~~~~~~~~-~~~~~~~~~~~g~~v~v~~~~-~~~e~~ 150 (253)
T 2p5t_B 111 NLLIEGTLRTVDV-PKKTAQLLKNKGYEVQLALIA-TKPELS 150 (253)
T ss_dssp CEEEECCTTSSHH-HHHHHHHHHHTTCEEEEEEEC-CCHHHH
T ss_pred CCCCCCHHHHHHH-HHHHHHHHHHCCCEEEEEEEE-CCHHHH
T ss_conf 8877531426999-999999987579859999880-998999
No 75
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.09 E-value=0.0006 Score=40.39 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=48.7
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCC--HHHHHH-----------HHHH------------H
Q ss_conf 14799589875899888899999986212426785241257889--888899-----------9986------------2
Q T0567 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN--APQLND-----------FIAL------------A 75 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~--~~~~~~-----------~l~~------------a 75 (145)
+..+...+|+|+|||||+++.+.+-..-.....+ |. -|++.+ ...+.+ ++.. .
T Consensus 201 ~~~~~~~lI~G~pGTGKTt~l~~i~~~l~~~~~~-Vl-l~ApT~~Aa~~L~e~~~~~a~tih~ll~~~~~~~~~~~~~~~ 278 (574)
T 3e1s_A 201 LAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLE-VG-LCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPA 278 (574)
T ss_dssp HTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCC-EE-EEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCC
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHCCC
T ss_conf 8449879998999706999999999999867997-99-990889999999877571256899975779642000012312
Q ss_pred CCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECC
Q ss_conf 58748743742068778999999987214010011147
Q T0567 76 QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIG 113 (145)
Q Consensus 76 ~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s 113 (145)
....+++||...++...-..|+..+.. ..|+|...
T Consensus 279 ~~d~vivDEaSmv~~~~~~~Ll~a~~~---~~rvilvG 313 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPP---GARVLLVG 313 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCT---TCEEEEEE
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHC---CCEEEEEC
T ss_conf 376688457667899999999987443---88899955
No 76
>1rkb_A Protein AD-004, protein CGI-137; five-stranded parallel beta-sheet flanked by 7 alpha- helices, transferase; 2.00A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00022 Score=42.79 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..|+|+|+|||||+++|+.|-.
T Consensus 5 p~Iii~G~pGsGKSTia~~La~ 26 (173)
T 1rkb_A 5 PNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 8598988999998999999999
No 77
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.94 E-value=0.00032 Score=41.89 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=25.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 7995898758998888999999862124267852412
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~ 59 (145)
...+++|.|++|+||+++|+.+.. +-.-+|+..|
T Consensus 3 ~~k~I~l~G~~GaGKTTvak~La~---~L~~~~id~d 36 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ---QLNMEFYDSD 36 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH---HTTCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH---HHCCCEECCC
T ss_conf 888499989999988999999999---9599868167
No 78
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.94 E-value=0.0005 Score=40.82 Aligned_cols=32 Identities=28% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 95898758998888999999862124267852412
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~ 59 (145)
.-|+|.|++||||+++|+.+-. +-..+++.++
T Consensus 10 rlI~l~G~pGsGKTTla~~La~---~l~~~~v~~~ 41 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN---LPGVPKVHFH 41 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT---CSSSCEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HHCCCEEECC
T ss_conf 5899989999888999999999---8499889888
No 79
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A
Probab=96.87 E-value=0.0019 Score=37.69 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=18.5
Q ss_pred CCCCEEEECCCCCCHH-HHHHHHHHHCCC
Q ss_conf 7995898758998888-999999862124
Q T0567 23 TDIAVWLYGAPGTGRM-TGARYLHQFGRN 50 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~-~~A~~iH~~s~~ 50 (145)
.+...+|+|+|||||| ++++.|...-..
T Consensus 194 ~~~~~lI~GPPGTGKT~ti~~ii~~l~~~ 222 (624)
T 2gk6_A 194 QRPLSLIQGPPGTGKTVTSATIVYHLARQ 222 (624)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 49987998999999899999999999861
No 80
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.86 E-value=0.0011 Score=38.96 Aligned_cols=42 Identities=31% Similarity=0.365 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCC---EEEECCCCCCHHHHHHHHHH
Q ss_conf 65898999999999986147995---89875899888899999986
Q T0567 4 IGRSEWINQYRRRLQQLSETDIA---VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 4 iG~S~~m~~l~~~i~~~a~~~~p---vli~Ge~GtGK~~~A~~iH~ 46 (145)
||.-....++.+.+.+--+ +.| |+|.||||+||+++|+.+..
T Consensus 2 v~~~~l~~~v~~iL~rr~k-nN~R~~ViLvG~PGvGKTaIvEgLA~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE-DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT-TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 7778999999999876524-79866768983999889999999999
No 81
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.86 E-value=0.00056 Score=40.55 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=19.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.-|+|+|.+||||+++|+.|+..
T Consensus 6 ~~I~l~G~~GsGKSTlA~~La~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79998899999999999999999
No 82
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.85 E-value=0.00069 Score=40.07 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..||+|.|.+||||+++|+.+...
T Consensus 2 ~~~I~l~G~~GsGKSTva~~La~~ 25 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 985999899999889999999999
No 83
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.83 E-value=0.003 Score=36.65 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=50.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCC---------C------CCHH---HH----HHHHHHH-----CCC
Q ss_conf 589875899888899999986212426785241257---------8------8988---88----9999862-----587
Q T0567 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT---------P------DNAP---QL----NDFIALA-----QGG 78 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~---------~------~~~~---~~----~~~l~~a-----~gG 78 (145)
=|++.|.+||||+++|+.+....+ .++.++.- . .+.. .. ...+..+ .+.
T Consensus 4 lIil~G~pGSGKST~a~~L~~~~~----~~~~i~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVK 79 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST----TEEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC----CCEEECCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999989999978999999998489----9899820799998413556554435744489999999999999998266787
Q ss_pred EEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHH
Q ss_conf 48743742068778999999987214010011147768789987
Q T0567 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAA 122 (145)
Q Consensus 79 tL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~ 122 (145)
.+++++. .+.+.....+.+........+++|.. ..+++.+.+
T Consensus 80 ~vIvd~t-~~~~~~r~~l~~~~~~~g~~v~~v~l-~~p~e~~~~ 121 (301)
T 1ltq_A 80 GVIISDT-NLNPERRLAWETFAKEYGWKVEHKVF-DVPWTELVK 121 (301)
T ss_dssp EEEECSC-CCCHHHHHHHHHHHHHTTCEEEEEEC-CCCHHHHHH
T ss_pred CEEECCC-CCCHHHHHHHHHHHHHCCCEEEEEEE-ECCHHHHHH
T ss_conf 2684077-89999999999888762984999999-399999999
No 84
>1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: c.108.1.9 c.37.1.1
Probab=96.83 E-value=0.0018 Score=37.81 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=52.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-CHHHHHHHHHH--HCCCEEEECCHHHCCHHHHHHHHHHHHH
Q ss_conf 58987589988889999998621242678524125788-98888999986--2587487437420687789999999872
Q T0567 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-NAPQLNDFIAL--AQGGTLVLSHPEHLTREQQYHLVQLQSQ 102 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-~~~~~~~~l~~--a~gGtL~l~ei~~L~~~~Q~~L~~~l~~ 102 (145)
-|++.|.|||||+++|+.+-. ...++.++-... +.........+ .+|..+++|+-. ++......+.++...
T Consensus 227 liilvG~PGSGKST~a~~~~~-----~~~~~~in~D~~~~~~~~~~~~~~~L~~g~~VViD~Tn-~~~~~R~~~i~lAk~ 300 (383)
T 1yj5_A 227 VVVAVGFPGAGKSTFIQEHLV-----SAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTN-PDVPSRARYIQCAKD 300 (383)
T ss_dssp EEEEECCTTSSHHHHHHHHTG-----GGTCEEEEHHHHCSHHHHHHHHHHHHHTTCCEEEESCC-CSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHHHHHH
T ss_conf 999956899867799998740-----49939993630444999999999999779968997899-999999999999998
Q ss_pred CCHHHEEEECCCCCHHHHHHCCC
Q ss_conf 14010011147768789987089
Q T0567 103 EHRPFRLIGIGDTSLVELAASNH 125 (145)
Q Consensus 103 ~~~~~RiI~~s~~~l~~l~~~~~ 125 (145)
....+++|.. ..+.+.....+.
T Consensus 301 ~g~~v~~v~~-~~~~e~~~~rn~ 322 (383)
T 1yj5_A 301 AGVPCRCFNF-CATIEQARHNNR 322 (383)
T ss_dssp HTCCEEEEEE-CCCHHHHHHHHH
T ss_pred CCCCEEEEEE-CCCHHHHHHHHH
T ss_conf 6994899997-899999999999
No 85
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A
Probab=96.78 E-value=0.0029 Score=36.74 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=38.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECC-------CC--CCHHH-----HHHHHHHHC-CCEEEECCHHHCCHH
Q ss_conf 8987589988889999998621242678524125-------78--89888-----899998625-874874374206877
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL-------TP--DNAPQ-----LNDFIALAQ-GGTLVLSHPEHLTRE 91 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~-------~~--~~~~~-----~~~~l~~a~-gGtL~l~ei~~L~~~ 91 (145)
|+++|.|||||+++|+.|...-.......+.++- .. ..... .......+. +..+++|... ..+.
T Consensus 7 Ill~G~PgSGKTT~A~~L~~~l~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIvD~~~-~~k~ 85 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWVIVDDTN-YYNS 85 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTTSEEEECSCC-CSHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC-CCHH
T ss_conf 998899998799999999999874399949978088764548887889999999999999986359827973456-8999
Q ss_pred HHHHHHHHHHHCCHHH
Q ss_conf 8999999987214010
Q T0567 92 QQYHLVQLQSQEHRPF 107 (145)
Q Consensus 92 ~Q~~L~~~l~~~~~~~ 107 (145)
....+..+.......+
T Consensus 86 ~R~~l~~~ak~~~~~~ 101 (260)
T 3a4m_A 86 MRRDLINIAKKYNKNY 101 (260)
T ss_dssp HHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHCCCCE
T ss_conf 9999998788618826
No 86
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20
Probab=96.76 E-value=0.0033 Score=36.45 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCC-EEEECCCCCCHHHHHHHHHHH
Q ss_conf 7665898999999999986147995-898758998888999999862
Q T0567 2 ELIGRSEWINQYRRRLQQLSETDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 2 ~liG~S~~m~~l~~~i~~~a~~~~p-vli~Ge~GtGK~~~A~~iH~~ 47 (145)
.++|.-....++++.+......+.. |.|+|-.|.|||++|..+...
T Consensus 129 ~~~gRe~~~~~i~~~L~~~~~~~~~vv~I~GmgGiGKTtLA~~~~~~ 175 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 175 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 31066789999999986045578608999758866689999999853
No 87
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.71 E-value=0.00054 Score=40.65 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=25.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 7995898758998888999999862124267852412
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~ 59 (145)
.+.+++|+|.+|+||+++|+.+... -.-||+..+
T Consensus 3 ~~k~I~l~G~~GsGKsTvak~La~~---lg~~~id~d 36 (175)
T 1via_A 3 LAKNIVFIGFMGSGKSTLARALAKD---LDLVFLDSD 36 (175)
T ss_dssp --CCEEEECCTTSCHHHHHHHHHHH---HTCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEECC
T ss_conf 9984999858999899999999998---499868443
No 88
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.64 E-value=0.00089 Score=39.49 Aligned_cols=105 Identities=12% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCC----CCCC--CCCEECCCC----------------------CCHHHHHHHHH--H
Q ss_conf 9589875899888899999986212----4267--852412578----------------------89888899998--6
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGR----NAQG--EFVYRELTP----------------------DNAPQLNDFIA--L 74 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~----~~~~--~fv~~~~~~----------------------~~~~~~~~~l~--~ 74 (145)
.-.||+|+|||||+++|+.+...-. ...+ .....+... ........... .
T Consensus 6 ~i~Li~G~PGtGKT~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCHH
T ss_conf 49999889997199999999999787522234776412413307666441014458888767899976321000145011
Q ss_pred HCCCEEEECCHHHCCHH-----HHHHHHHHHHH-CCHHHEEEECCCCCHHHHHHCCCCCHHHHHHHCC
Q ss_conf 25874874374206877-----89999999872-1401001114776878998708976565575544
Q T0567 75 AQGGTLVLSHPEHLTRE-----QQYHLVQLQSQ-EHRPFRLIGIGDTSLVELAASNHIIAELYYCFAM 136 (145)
Q Consensus 75 a~gGtL~l~ei~~L~~~-----~Q~~L~~~l~~-~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~ 136 (145)
.....+++|+.+.+... ....++.++.. .+.++.+|++++. +. .+.+.+..|+..
T Consensus 86 ~~~~~~~~de~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~tq~-~~------~ld~~ir~r~~~ 146 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG-PK------LLDQNLRTLVRK 146 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC-GG------GBCHHHHTTEEE
T ss_pred HCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC-HH------HCCHHHHHHHHE
T ss_conf 01322234411012455320457999999998387669259984389-24------558999975008
No 89
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5}
Probab=96.57 E-value=0.00082 Score=39.66 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=24.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 5898758998888999999862124267852412
Q T0567 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~ 59 (145)
-++|+|.+|+||+++|+.+.. +-.-||+..|
T Consensus 2 ~I~l~G~~GsGKSTiak~LA~---~L~~~~id~D 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR---SLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH---HHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH---HHCCCEEECC
T ss_conf 899989999989999999999---9598989898
No 90
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.57 E-value=0.016 Score=32.73 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=16.9
Q ss_pred HCCCCCEEEECCCCCCHHHHHH
Q ss_conf 1479958987589988889999
Q T0567 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~ 42 (145)
|.....++|+|.|||||+++..
T Consensus 161 al~~~~~lI~GgpGTGKTttl~ 182 (608)
T 1w36_D 161 ALTRRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp HHTBSEEEEECCTTSTHHHHHH
T ss_pred HHHCCEEEEECCCCCCCCCHHH
T ss_conf 9737907984699986403299
No 91
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.56 E-value=0.025 Score=31.74 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=46.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECC---------------CCCCHHHH-------HHH----HHHHCCCEE
Q ss_conf 8987589988889999998621242678524125---------------78898888-------999----986258748
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL---------------TPDNAPQL-------NDF----IALAQGGTL 80 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~---------------~~~~~~~~-------~~~----l~~a~gGtL 80 (145)
|++.|.+||||+++|+.+....+. +..++. ...+.... ... +.....+..
T Consensus 5 Iii~G~pGSGKSTla~~l~~~~~~----~~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPG----FYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTT----EEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC----CEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999898999989999999984899----7998515889987111110101100445577899999999999980777772
Q ss_pred EECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHC
Q ss_conf 7437420687789999999872140100111477687899870
Q T0567 81 VLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAAS 123 (145)
Q Consensus 81 ~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~ 123 (145)
++-+-.....+....+.+........+.+|... .+++.+.+.
T Consensus 81 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~e~~~~R 122 (181)
T 1ly1_A 81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFD-VPWTELVKR 122 (181)
T ss_dssp EEECSCCCSHHHHHHHHHHHHHHTCEEEEEECC-CCHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHH
T ss_conf 587356699999999999999759918999957-999999999
No 92
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A*
Probab=96.53 E-value=0.00093 Score=39.38 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=24.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 95898758998888999999862124267852412
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~ 59 (145)
.+++|.|.+|+||+++|+.+. .+-.-+|+..|
T Consensus 8 k~IiliG~~GsGKSTigk~La---~~l~~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG---LALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH---HHHTCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHH---HHHCCCEEECC
T ss_conf 658999999998999999999---99699989667
No 93
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} SCOP: c.37.1.1
Probab=96.52 E-value=0.0014 Score=38.38 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=20.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
....|+|+|++|+||+++|+.|-.
T Consensus 9 k~~~I~l~G~~GsGKSTia~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 998799982999998999999999
No 94
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.45 E-value=0.0018 Score=37.88 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7995898758998888999999862
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
++.=|+|.|.+|+||+++|+.+...
T Consensus 2 ~~~iI~l~G~~GsGKsTvA~~La~~ 26 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9739999899999989999999998
No 95
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.40 E-value=0.0036 Score=36.22 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC---------------CCHHHHHHHHHHH
Q ss_conf 9999999986147995898758998888999999862124267852412578---------------8988889999862
Q T0567 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP---------------DNAPQLNDFIALA 75 (145)
Q Consensus 11 ~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~---------------~~~~~~~~~l~~a 75 (145)
.+....++.+.....+++|.|++||||+++.+++-..-+.. ...+.+.-.. .......+++..+
T Consensus 158 ~~~~~~L~~~v~~~~nilI~G~tgsGKTTll~al~~~i~~~-~riv~IEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~ 236 (330)
T 2pt7_A 158 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCC-CCEEECCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 99999999999808858999607999899999996016765-64432254044431346650012247888999999998
Q ss_pred ---CCCEEEECCHHHCCHHHHHHHHHHHHHCCH
Q ss_conf ---587487437420687789999999872140
Q T0567 76 ---QGGTLVLSHPEHLTREQQYHLVQLQSQEHR 105 (145)
Q Consensus 76 ---~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~ 105 (145)
..-.+++.|+- ..+... +++.+..++.
T Consensus 237 lR~~pd~iivgEiR--~~ea~~-~l~a~~tGh~ 266 (330)
T 2pt7_A 237 LRMRPDRIILGELR--SSEAYD-FYNVLCSGHK 266 (330)
T ss_dssp TTSCCSEEEECCCC--STHHHH-HHHHHHTTCC
T ss_pred HCCCCCCEEECCCC--CHHHHH-HHHHHHHCCC
T ss_conf 47499833536658--689999-9999982499
No 96
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1}
Probab=96.38 E-value=0.002 Score=37.57 Aligned_cols=24 Identities=46% Similarity=0.808 Sum_probs=19.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
+.-|+|+|.+|+||+++|+.|...
T Consensus 13 g~iI~l~G~~GsGKTTia~~La~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 928999899998889999999998
No 97
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25
Probab=96.37 E-value=0.0017 Score=37.99 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5898758998888999999862
Q T0567 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
-|+|.|.+|+||+++|+.|...
T Consensus 4 lIiI~G~~GsGKTT~ak~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7999899998989999999998
No 98
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.27 E-value=0.0081 Score=34.33 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=15.8
Q ss_pred CCCEEEECCCCCCHHHHHHHH
Q ss_conf 995898758998888999999
Q T0567 24 DIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~i 44 (145)
..-.+|+|+||||||.++-.+
T Consensus 371 ~~lsLIqGPPGTGKT~ti~~i 391 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATI 391 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
T ss_conf 995799889998688999999
No 99
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.23 E-value=0.002 Score=37.56 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=24.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 95898758998888999999862124267852412
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~ 59 (145)
..+.|.|.+|+||+++|+.+. .+-+.+|+..|
T Consensus 3 ~~IiliG~~GsGKSTi~k~La---~~L~~~~iD~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA---KALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH---HHHTCCEEEHH
T ss_pred CCEEEECCCCCCHHHHHHHHH---HHHCCCEEECC
T ss_conf 989998799998899999999---99599878779
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.19 E-value=0.0024 Score=37.13 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+.|+|+|++|+||+++.+.|-.
T Consensus 1 ~ki~I~G~~GsGKSTLlk~i~~ 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999999998089999999983
No 101
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.19 E-value=0.0041 Score=35.89 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=41.6
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCC-CCCCCCCEECCC----------CCCHHHHHH----HHH----HHCCCEEE
Q ss_conf 14799589875899888899999986212-426785241257----------889888899----998----62587487
Q T0567 21 SETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFVYRELT----------PDNAPQLND----FIA----LAQGGTLV 81 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~~iH~~s~-~~~~~fv~~~~~----------~~~~~~~~~----~l~----~a~gGtL~ 81 (145)
.+...-|||+|-+|+||+++|+.+...-. ....+++.+|.. ..+...... ... ....|..+
T Consensus 22 ~~kg~vIwitGlsGSGKTTiA~~L~~~L~~~~~~~~~~lDgD~~R~~l~~~~~ys~~~r~~~~~r~~~~a~~l~~~g~~v 101 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIA 101 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 89987999989999998999999999999863998899753889987266779986789999999999999841379745
Q ss_pred ECCHHHCCHHHHHHHHHHHH
Q ss_conf 43742068778999999987
Q T0567 82 LSHPEHLTREQQYHLVQLQS 101 (145)
Q Consensus 82 l~ei~~L~~~~Q~~L~~~l~ 101 (145)
+-..-....+.+.+..++..
T Consensus 102 Iv~~v~~~~~~R~~~r~~~~ 121 (211)
T 1m7g_A 102 ITSFISPYRKDRDTARQLHE 121 (211)
T ss_dssp EEECCCCCHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHH
T ss_conf 76314555999999998724
No 102
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.18 E-value=0.0031 Score=36.55 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999999998614799589875899888899999986
Q T0567 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 10 m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
|....+++++ ..-++|.|+||+||+++|+.|-.
T Consensus 2 ~~~~~~~~~k----~kiI~l~G~pGSGKsT~a~~La~ 34 (199)
T 2bwj_A 2 MGGFMEDLRK----CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp --CHHHHHHH----SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCHHHHCCC----CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 1205677116----85899989999998999999999
No 103
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A
Probab=96.17 E-value=0.0027 Score=36.86 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.||.|.|++|+||+++|+.+...
T Consensus 2 r~Ivi~Gp~GsGKtTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 76999889999999999999976
No 104
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.13 E-value=0.0032 Score=36.46 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.5
Q ss_pred CCC--EEEECCCCCCHHHHHHHHHH
Q ss_conf 995--89875899888899999986
Q T0567 24 DIA--VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~p--vli~Ge~GtGK~~~A~~iH~ 46 (145)
+.| |+|.|+|||||+++|+.|-.
T Consensus 4 ~kp~iI~i~G~pGsGKsTia~~Lae 28 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8994899989999988999999999
No 105
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, acetylation, activator, ATP-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.12 E-value=0.031 Score=31.17 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=21.5
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHH-HHHHHHHHH
Q ss_conf 999986147995898758998888-999999862
Q T0567 15 RRLQQLSETDIAVWLYGAPGTGRM-TGARYLHQF 47 (145)
Q Consensus 15 ~~i~~~a~~~~pvli~Ge~GtGK~-~~A~~iH~~ 47 (145)
+.+-..-..+..|+|.|++||||+ .+-.+|...
T Consensus 67 ~~il~~i~~n~vviv~g~TGSGKTTqiPq~lle~ 100 (235)
T 3llm_A 67 SEILEAISQNSVVIIRGATGCGKTTQVPQFILDD 100 (235)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999999969979998089999998999999972
No 106
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.06 E-value=0.0021 Score=37.46 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=20.4
Q ss_pred CCC-EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 995-8987589988889999998621
Q T0567 24 DIA-VWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 24 ~~p-vli~Ge~GtGK~~~A~~iH~~s 48 (145)
..| |+|.|.+|+||+++|+.+...-
T Consensus 4 ~~~iI~I~G~~GsGKsTva~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88079988999967999999999982
No 107
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330}
Probab=96.03 E-value=0.0049 Score=35.52 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=52.6
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC---------------CH--------HHHH
Q ss_conf 999999861479958987589988889999998621242678524125788---------------98--------8889
Q T0567 13 YRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD---------------NA--------PQLN 69 (145)
Q Consensus 13 l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~---------------~~--------~~~~ 69 (145)
..+.++.+.....+++|.|++||||+++.+++-..-+. +..++.+.-..+ .. ..+.
T Consensus 164 ~~~~L~~~v~~~~nili~G~tgsGKTTll~al~~~ip~-~~riv~iEd~~El~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAA 242 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEEEEECC----------CCHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCC-CCCCEEEECCHHHHCCCCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf 99999999973996999899987699999999973597-66713773667764256676256454235654773055699
Q ss_pred HHHHH---HCCCEEEECCHHHCCHHHHHHHHHHHHHCC
Q ss_conf 99986---258748743742068778999999987214
Q T0567 70 DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEH 104 (145)
Q Consensus 70 ~~l~~---a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~ 104 (145)
+++.. .+-..+++.|+-. .+... +++.+..++
T Consensus 243 ~l~~~~LR~~pd~iiiGEiR~--~Ea~~-~~~a~~tGh 277 (361)
T 2gza_A 243 TLLRSCLRMKPTRILLAELRG--GEAYD-FINVAASGH 277 (361)
T ss_dssp HHHHHHTTSCCSEEEESCCCS--THHHH-HHHHHHTTC
T ss_pred HHHHHHHCCCCCCCEECCCCC--HHHHH-HHHHHHCCC
T ss_conf 999998475999513153163--89999-999997089
No 108
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.94 E-value=0.012 Score=33.48 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=23.5
Q ss_pred HHHHHHCCCC--C-EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 9998614799--5-89875899888899999986212
Q T0567 16 RLQQLSETDI--A-VWLYGAPGTGRMTGARYLHQFGR 49 (145)
Q Consensus 16 ~i~~~a~~~~--p-vli~Ge~GtGK~~~A~~iH~~s~ 49 (145)
-+++++..+. . |.|.|++|+||+++|+.+.....
T Consensus 11 ~~~~~~~~~~~r~iIgI~G~~gSGKSTlak~L~~~l~ 47 (208)
T 3c8u_A 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9997511499938999889887899999999999851
No 109
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=95.94 E-value=0.004 Score=35.98 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5898758998888999999862
Q T0567 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
-|+|.|.+||||+++|+.|...
T Consensus 7 iI~i~G~~GsGKTTla~~La~~ 28 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999868999989999999999
No 110
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21
Probab=95.92 E-value=0.0012 Score=38.82 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH----CCCCC--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 999999999861----47995--8987589988889999998621242678524125
Q T0567 10 INQYRRRLQQLS----ETDIA--VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL 60 (145)
Q Consensus 10 m~~l~~~i~~~a----~~~~p--vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~ 60 (145)
.+++.+.++.+. ....| +++-|.||+||+.+++.+.... .+.+|.+|.
T Consensus 13 ~~~l~~~~~~l~~g~~~~~~PkAi~LaGqPGSGKS~v~~~~~~~~---~g~~v~id~ 66 (287)
T 1gvn_B 13 ENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECT
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC---CCCEEEECH
T ss_conf 999999999997176766797699980689878899999986241---897587578
No 111
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.89 E-value=0.0048 Score=35.54 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+.|+|.|++||||+++|+.|..
T Consensus 21 m~Ivi~G~pGSGKsT~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 4799989999998999999999
No 112
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.87 E-value=0.0048 Score=35.55 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
|+|+|.+|+||+++|+++-.
T Consensus 4 I~l~G~~GsGKSTva~~L~~ 23 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLLKE 23 (179)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999889999999997
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A*
Probab=95.84 E-value=0.0048 Score=35.54 Aligned_cols=28 Identities=18% Similarity=0.008 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 8987589988889999998621242678524
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVY 57 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~ 57 (145)
|.|.|++||||+++|+.|... -+.+|+.
T Consensus 4 Ivi~G~~GsGKsT~a~~La~~---l~~~~i~ 31 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKE---LKYPIIK 31 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHH---HCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH---HCCCEEC
T ss_conf 999789999989999999999---6978448
No 114
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.82 E-value=0.0061 Score=34.99 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=43.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCC----------CCCHHHHH----HH---H-HHHCCCEEEECCH
Q ss_conf 99589875899888899999986212426785241257----------88988889----99---9-8625874874374
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT----------PDNAPQLN----DF---I-ALAQGGTLVLSHP 85 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~----------~~~~~~~~----~~---l-~~a~gGtL~l~ei 85 (145)
..-+||+|-+|+||+++|+.+...-.....+.+.+|.. ..+..+.. .. . ..++.|..++-.+
T Consensus 372 ~~viw~tGlsgsGKtTia~~l~~~l~~~~~~~~~lDGD~lR~~l~~~l~~s~~~R~~~~~r~~~la~~l~~~g~~vIvs~ 451 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICAL 451 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 35999847889807699999999986169659998178999652866578988999999999999999986899899995
Q ss_pred HHCCHHHHHHHHHHH
Q ss_conf 206877899999998
Q T0567 86 EHLTREQQYHLVQLQ 100 (145)
Q Consensus 86 ~~L~~~~Q~~L~~~l 100 (145)
-....+.+.+.-+.+
T Consensus 452 isp~~~~R~~~r~~~ 466 (546)
T 2gks_A 452 VSPYRSARNQVRNMM 466 (546)
T ss_dssp CCCCHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHC
T ss_conf 789999999999757
No 115
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.80 E-value=0.011 Score=33.67 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9999999986147995--8987589988889999998621
Q T0567 11 NQYRRRLQQLSETDIA--VWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 11 ~~l~~~i~~~a~~~~p--vli~Ge~GtGK~~~A~~iH~~s 48 (145)
..+...+.. .++..| |-|.|++|+||+++|+.|...-
T Consensus 8 ~~~~~~~~~-~~~~~~~iIgI~G~~GsGKSTla~~L~~~l 46 (201)
T 1rz3_A 8 DFLCKTILA-IKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHT-SCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999986-256998899977987379999999999983
No 116
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.78 E-value=0.0056 Score=35.19 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.+..|+|.|+||+||+++|+.|..
T Consensus 4 ~P~~I~i~GppGSGKsT~a~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 980899989999997999999999
No 117
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.77 E-value=0.0039 Score=36.04 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=20.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
....++|.|+|||||++.|+.|..
T Consensus 3 ~~k~Ivl~G~PGSGKsT~a~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 888899988999987999999999
No 118
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.77 E-value=0.0048 Score=35.54 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=20.3
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHH
Q ss_conf 47995-89875899888899999986
Q T0567 22 ETDIA-VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 22 ~~~~p-vli~Ge~GtGK~~~A~~iH~ 46 (145)
..+.| |+|.|+|||||+++|+.|-.
T Consensus 12 ~~~~~iI~i~GppGSGKsT~a~~La~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99881899989999987999999999
No 119
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.74 E-value=0.0059 Score=35.08 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...++|.|+||+||+++|+.|..
T Consensus 5 ~~~I~i~GppGsGKsTia~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 73699989998998999999999
No 120
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.72 E-value=0.006 Score=35.03 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898758998888999999862
Q T0567 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~ 47 (145)
++|.|.+|+||+++|+.|...
T Consensus 11 iil~G~~GsGKSTla~~La~~ 31 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899998989999999999
No 121
>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.67 E-value=0.0051 Score=35.40 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=18.3
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-|+|.|+|||||+++|+.|-.
T Consensus 11 iI~i~G~pGSGKsT~a~~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999987999999999
No 122
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.65 E-value=0.079 Score=29.00 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9958987589988889999998621
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s 48 (145)
..-+.|.|+.|+||+++++.|...-
T Consensus 369 G~~iaIvG~sGsGKSTLl~lL~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8779986799974657999983567
No 123
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.64 E-value=0.006 Score=35.03 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+.++|.|+||+||+++|+.|-.
T Consensus 1 m~I~i~GpPGSGK~T~a~~La~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9799989999987999999999
No 124
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A
Probab=95.64 E-value=0.0065 Score=34.82 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-++|.|+||+||+++|+.|..
T Consensus 2 iI~i~GppGsGKsT~a~~La~ 22 (206)
T 2rgx_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999987999999999
No 125
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.58 E-value=0.0079 Score=34.40 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7995898758998888999999862
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.+.||.|.|++|+||+++++.+...
T Consensus 3 ~pr~Ivl~GpsGsGK~tl~~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9867999999999999999999985
No 126
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0073 Score=34.56 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-|+|.|+||+||+++|+.|..
T Consensus 5 ~I~i~G~pGSGKsT~a~~La~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999998999999999
No 127
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.55 E-value=0.0072 Score=34.62 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=19.8
Q ss_pred CCCC---EEEECCCCCCHHHHHHHHHH
Q ss_conf 7995---89875899888899999986
Q T0567 23 TDIA---VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~p---vli~Ge~GtGK~~~A~~iH~ 46 (145)
...| |.|+|++||||+++|+++-.
T Consensus 7 ~~~Pk~II~itG~~gSGKSTva~~L~~ 33 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999838999889899999999999999
No 128
>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.46 E-value=0.0074 Score=34.54 Aligned_cols=24 Identities=33% Similarity=0.695 Sum_probs=20.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+.+-++|.|+||+||++.|+.|-.
T Consensus 7 ~~M~I~i~GpPGSGK~T~a~~La~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 750799989999987999999999
No 129
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.46 E-value=0.1 Score=28.36 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=25.4
Q ss_pred EEEECCCCCCHH-HHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHH
Q ss_conf 898758998888-999999862124267852412578898888999
Q T0567 27 VWLYGAPGTGRM-TGARYLHQFGRNAQGEFVYRELTPDNAPQLNDF 71 (145)
Q Consensus 27 vli~Ge~GtGK~-~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~ 71 (145)
+++.|++|+||+ ++|++-+.... .+.....+.|........+++
T Consensus 108 i~lvG~~G~GKTTTiaKLA~~~~~-~~~~v~lia~Dt~R~aA~eQL 152 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQL 152 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHH
T ss_conf 995053013530378899999998-099622675201011146789
No 130
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.44 E-value=0.0087 Score=34.17 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..+-++|.|+||+||++.|+.|-.
T Consensus 3 ~~mrI~i~GpPGsGK~T~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 731899989999987999999999
No 131
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.44 E-value=0.0086 Score=34.19 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898758998888999999862
Q T0567 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~ 47 (145)
+.|.|.+|+||+++|+.|...
T Consensus 3 I~i~G~~GsGKSTla~~L~~~ 23 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899988999999999998
No 132
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.37 E-value=0.0086 Score=34.18 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.6
Q ss_pred HCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 14799589875899888899999
Q T0567 21 SETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
...+..|++.|++||||+.+|-.
T Consensus 19 i~~~~~vlv~gptGsGKT~~~~~ 41 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHH
T ss_pred HHCCCCEEEEECCCCHHHHHHHH
T ss_conf 97399789991898639999999
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A*
Probab=95.35 E-value=0.0096 Score=33.94 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=22.0
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 861479958987589988889999998
Q T0567 19 QLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 19 ~~a~~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
..+...+.++|.|+||+||++.|+.|-
T Consensus 22 ~~~~~~~riiilGpPGSGK~Tqa~~La 48 (246)
T 2bbw_A 22 SMASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ----CCCEEEEECCTTSSHHHHHHHHH
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 535031449998999998799999999
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1
Probab=95.33 E-value=0.019 Score=32.30 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC-------------------CCHHH
Q ss_conf 98999999999986147995898758998888999999862124267852412578-------------------89888
Q T0567 7 SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP-------------------DNAPQ 67 (145)
Q Consensus 7 S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~-------------------~~~~~ 67 (145)
|+.+.. .+..+......++|.|++||||+++..++-..-+. ....+.+.-.. .+...
T Consensus 246 s~~~~~---~l~~~v~~~~~ili~G~tgSGKTT~L~all~~i~~-~~riitIEd~~El~l~~~~~~~~~~~~~~g~~~it 321 (511)
T 2oap_1 246 PSGVLA---YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEID 321 (511)
T ss_dssp CHHHHH---HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBC
T ss_pred CHHHHH---HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHH
T ss_conf 199999---99999866973999889989879999999986323-56434411672223567770333431267854688
Q ss_pred HHHHHHHH---CCCEEEECCHHHCCHHHHHHHHHHHHHCC
Q ss_conf 89999862---58748743742068778999999987214
Q T0567 68 LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEH 104 (145)
Q Consensus 68 ~~~~l~~a---~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~ 104 (145)
+..++..+ .--.+++-|+-. ++... +++.+..++
T Consensus 322 ~~~ll~~aLR~~PD~IvVGEiR~--~Ea~~-~~~A~~tGh 358 (511)
T 2oap_1 322 MYDLLRAALRQRPDYIIVGEVRG--REAQT-LFQAMSTGH 358 (511)
T ss_dssp HHHHHHTTGGGCCSEEEESCCCS--THHHH-HHHHHHTTC
T ss_pred HHHHHHHHCCCCCCEEEECCCCC--HHHHH-HHHHHHCCC
T ss_conf 99999996077998898536667--67999-999997399
No 135
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.31 E-value=0.065 Score=29.46 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
+.-|+|.|.+|+||+++++.+...
T Consensus 3 ~~iI~i~G~~GsGKtT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 988999899996989999999999
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.31 E-value=0.0035 Score=36.31 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=18.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5898758998888999999862
Q T0567 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
=|.|+|++||||+++|+.|-..
T Consensus 4 ii~IvG~~GSGKTTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999878998499999999856
No 137
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.31 E-value=0.0091 Score=34.06 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=18.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+.++|.|+||+||++.|+.|-.
T Consensus 1 m~I~i~GpPGsGK~T~a~~la~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9799989999987999999999
No 138
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.29 E-value=0.0098 Score=33.89 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+.|+|.|+|||||+++|+.|..
T Consensus 1 mrI~i~G~PGSGK~T~a~~La~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9899989999987999999999
No 139
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.038 Score=30.71 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 99999986147995898758998888999999862124
Q T0567 13 YRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
Q Consensus 13 l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~ 50 (145)
..++.+..+....-|||.|+..+||+++||.+-...-+
T Consensus 127 ~Le~~R~~~~~GPrVLVvGp~~sGKSTl~r~L~Nyalr 164 (460)
T 2npi_A 127 MLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp HHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999877425988999899988889999999999986
No 140
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis}
Probab=95.25 E-value=0.014 Score=32.99 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred HCCCCC----EEEECCCCCCHHHHHHHHHHH
Q ss_conf 147995----898758998888999999862
Q T0567 21 SETDIA----VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 21 a~~~~p----vli~Ge~GtGK~~~A~~iH~~ 47 (145)
|++..| |.|.|..|+||+++++.+...
T Consensus 14 ~~~~~~~gmlIaieG~~GsGKSTl~~~L~~~ 44 (223)
T 3ld9_A 14 AQTQGPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp -----CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5778999608998899889999999999999
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 1u9i_A* 2gbl_A* 3dvl_A*
Probab=95.25 E-value=0.091 Score=28.68 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=12.5
Q ss_pred CCCEEEECCCCCCHHHHHH
Q ss_conf 9958987589988889999
Q T0567 24 DIAVWLYGAPGTGRMTGAR 42 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~ 42 (145)
...++|.|+||+||+++|.
T Consensus 39 Gs~~lI~G~pGsGKT~fa~ 57 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSI 57 (525)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CEEEEEEECCCCCHHHHHH
T ss_conf 9299999289999999999
No 142
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.13 E-value=0.011 Score=33.71 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCCCCEE--EECCCCCCHHHHHHHHHHH
Q ss_conf 4799589--8758998888999999862
Q T0567 22 ETDIAVW--LYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 22 ~~~~pvl--i~Ge~GtGK~~~A~~iH~~ 47 (145)
+-+.|++ |.|.+||||+++|+.|...
T Consensus 17 ~~~k~~iI~I~G~~GSGKSTla~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8998399999999984699999999998
No 143
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.11 E-value=0.0061 Score=34.97 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 99999999986147995898758998888999999862
Q T0567 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 10 m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
...+++...-..+-..-|+|+|.+|+||+++|+.+...
T Consensus 355 ~~iL~~~~~p~~~~g~vI~L~G~~GaGKSTIAr~LA~~ 392 (552)
T 3cr8_A 355 LAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp HHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89998864035788649999788888772899999999
No 144
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.08 E-value=0.012 Score=33.44 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=21.4
Q ss_pred CCCCC--EEEECCCCCCHHHHHHHHHHH
Q ss_conf 47995--898758998888999999862
Q T0567 22 ETDIA--VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 22 ~~~~p--vli~Ge~GtGK~~~A~~iH~~ 47 (145)
..+.| |-|+|..||||+++|+.|...
T Consensus 18 ~~~~P~IIgItG~~GSGKSTla~~L~~~ 45 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999399998898977889999999999
No 145
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.07 E-value=0.014 Score=33.12 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 4799589875899888899999986
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.....|.|.|+||+||+++|+.|-.
T Consensus 14 p~~~riii~GpPGSGK~T~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9862899989999986999999999
No 146
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.06 E-value=0.079 Score=29.00 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-CHHHH-------------------------HHHHHHHCC
Q ss_conf 9958987589988889999998621242678524125788-98888-------------------------999986258
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-NAPQL-------------------------NDFIALAQG 77 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-~~~~~-------------------------~~~l~~a~g 77 (145)
..-+.|+|+++|||+++|-.+-.......+..+.+|+... +...+ +.+...-..
T Consensus 63 g~i~ei~G~~~sGKTtlal~~~~~~q~~g~~~~~iD~E~~~~~~~~~~~GvD~~~l~~~~~~~~E~~~~i~~~l~~~~~~ 142 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 142 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 80899988876778999999999985579869998130345988999819878993896788799999999999747998
Q ss_pred CEEEECCHHHCCHH
Q ss_conf 74874374206877
Q T0567 78 GTLVLSHPEHLTRE 91 (145)
Q Consensus 78 GtL~l~ei~~L~~~ 91 (145)
..+++|.+..|.+.
T Consensus 143 ~liViDSv~~l~p~ 156 (356)
T 1u94_A 143 DVIVVDSVAALTPK 156 (356)
T ss_dssp SEEEEECGGGCCCH
T ss_pred CEEEEECCCCCCCH
T ss_conf 78999675666888
No 147
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.00 E-value=0.012 Score=33.34 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.7
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 4799589875899888899999986
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+.++|.|+||+||++.|+.|-.
T Consensus 5 ~~~m~Iii~GpPGSGK~Tqa~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 4515399989999987999999999
No 148
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.00 E-value=0.016 Score=32.80 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.8
Q ss_pred CCCCCEE--EECCCCCCHHHHHHHHHH
Q ss_conf 4799589--875899888899999986
Q T0567 22 ETDIAVW--LYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 22 ~~~~pvl--i~Ge~GtGK~~~A~~iH~ 46 (145)
.+..|++ |+|.+|+||+++|+++-.
T Consensus 4 ~~k~P~iIgItG~~GSGKsTva~~l~~ 30 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 888858999989986669999999998
No 149
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.95 E-value=0.0087 Score=34.17 Aligned_cols=109 Identities=19% Similarity=0.173 Sum_probs=54.7
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCEECCC----------CCCHHHH----HHH--HH--HHCCCEEE
Q ss_conf 147995898758998888999999862124267-85241257----------8898888----999--98--62587487
Q T0567 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG-EFVYRELT----------PDNAPQL----NDF--IA--LAQGGTLV 81 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~-~fv~~~~~----------~~~~~~~----~~~--l~--~a~gGtL~ 81 (145)
+....-+||+|-+||||+++|+.+...-..... +.+.+|.. ..+...- ... +. -...|..+
T Consensus 393 ~~~~~iiw~tGLsGsGKTTlA~~L~~~L~~~~~~~~~~lDgD~~R~~l~~~l~~s~~~R~~n~~r~~~la~~l~~qg~~V 472 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV 472 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 47765999967899887599999999999747963898268999865055546567799999999999999998689989
Q ss_pred ECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHCCCCCHHHHHH
Q ss_conf 4374206877899999998721401001114776878998708976565575
Q T0567 82 LSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
Q Consensus 82 l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~l~~l~~~~~~~~~L~~~ 133 (145)
|-..=....+.+.+..+.+.... ++--|. -..+++.+.++. ...||.+
T Consensus 473 Ivs~isp~~~~R~~~R~~~~~~~-~y~eIy-l~~~l~~~~~RD--~KglY~k 520 (573)
T 1m8p_A 473 IAAPIAPYEESRKFARDAVSQAG-SFFLVH-VATPLEHCEQSD--KRGIYAA 520 (573)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTS-EEEEEE-ECCCHHHHHHHC--SSCHHHH
T ss_pred EEECCCCCHHHHHHHHHHHCCCC-CEEEEE-EECCHHHHHHHC--CCCHHHH
T ss_conf 99617899999999998602248-779999-979999998857--5206678
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=94.69 E-value=0.045 Score=30.30 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=48.2
Q ss_pred CEEEECCCCCCHHHH-HHHHHHHCCCCCC--CCCEECCCCCCH---------------------HHHHHHHHHH-CCCEE
Q ss_conf 589875899888899-9999862124267--852412578898---------------------8889999862-58748
Q T0567 26 AVWLYGAPGTGRMTG-ARYLHQFGRNAQG--EFVYRELTPDNA---------------------PQLNDFIALA-QGGTL 80 (145)
Q Consensus 26 pvli~Ge~GtGK~~~-A~~iH~~s~~~~~--~fv~~~~~~~~~---------------------~~~~~~l~~a-~gGtL 80 (145)
-+++.|++|+||++. |+.-+....+... .++..|...... .++...+... +...+
T Consensus 107 vI~lvGptGvGKTTtiaKLAa~~~~~~~~~V~lit~Dt~R~~a~eQLk~ya~~l~vp~~~~~~~~~l~~a~~~~~~~d~v 186 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDHV 186 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 89998999888899999999999874368358983798983799999999874179723332056899999873037889
Q ss_pred EECCHHHCCHHHH--HHHHHHHHHCC-HHHEEEECCCCCHHHHHHCCC
Q ss_conf 7437420687789--99999987214-010011147768789987089
Q T0567 81 VLSHPEHLTREQQ--YHLVQLQSQEH-RPFRLIGIGDTSLVELAASNH 125 (145)
Q Consensus 81 ~l~ei~~L~~~~Q--~~L~~~l~~~~-~~~RiI~~s~~~l~~l~~~~~ 125 (145)
++|=..+.+.+.+ ..|..+.+... ..+-++.+.+.....+.+...
T Consensus 187 lIDTaGr~~~~~~~~~eL~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~ 234 (296)
T 2px0_A 187 FVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVK 234 (296)
T ss_dssp EEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 873787200005799999998743278626999847875355899999
No 151
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.65 E-value=0.022 Score=32.01 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-||++|-+||||+++|+.+..
T Consensus 54 ~iwltGlsGSGKSTIA~~L~~ 74 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999989999999999
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2}
Probab=94.60 E-value=0.033 Score=31.06 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=23.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 79958987589988889999998621242678524125
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL 60 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~ 60 (145)
...-++|+|++|+||+++|..+-........+.+.+++
T Consensus 22 ~G~l~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99599999689999999999999998762014444434
No 153
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 1u9i_A* 2gbl_A* 3dvl_A*
Probab=94.53 E-value=0.035 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=24.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 79958987589988889999998621242678524125
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL 60 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~ 60 (145)
...-++++|++||||++++.-+-...-....+.+.+..
T Consensus 280 ~Gs~~ll~G~~GsGKT~l~~~f~~~~~~~Ge~~lyis~ 317 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 76599994688766999999999999865994399984
No 154
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.52 E-value=0.014 Score=33.10 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHH
Q ss_conf 999999861479---958987589988889999998
Q T0567 13 YRRRLQQLSETD---IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 13 l~~~i~~~a~~~---~pvli~Ge~GtGK~~~A~~iH 45 (145)
+-.|..+.+... ..|||.|++|+||+++..+|-
T Consensus 28 ~~~~~~~~~~~~~~~ftIlvvG~tGsGKST~INaLl 63 (427)
T 2qag_B 28 LPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp -CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 567899998626875899998899998999999985
No 155
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.46 E-value=0.024 Score=31.84 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=20.0
Q ss_pred CCCC--EEEECCCCCCHHHHHHHHHHH
Q ss_conf 7995--898758998888999999862
Q T0567 23 TDIA--VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 23 ~~~p--vli~Ge~GtGK~~~A~~iH~~ 47 (145)
+..| |.|.|++|+||+++|+.+...
T Consensus 22 ~~kp~iIgI~G~~GSGKSTvA~~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999579998998865399999999998
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.44 E-value=0.1 Score=28.36 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=42.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHH-------------------HH-------HHHHHCC
Q ss_conf 995898758998888999999862124267852412578898888-------------------99-------9986258
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQL-------------------ND-------FIALAQG 77 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~-------------------~~-------~l~~a~g 77 (145)
..-+-|+|+++|||+++|-.+-.......+..+.+|+...-.+++ ++ ++....-
T Consensus 61 gri~ei~G~~~sGKT~~al~~~~~~q~~g~~~~~iD~E~~~~~~~a~~~GvD~~~l~~~~~~~~E~~~~i~~~li~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 82899988876778999999998752589879999886558999999849988996997799699999999999736997
Q ss_pred CEEEECCHHHCCH
Q ss_conf 7487437420687
Q T0567 78 GTLVLSHPEHLTR 90 (145)
Q Consensus 78 GtL~l~ei~~L~~ 90 (145)
..+++|-+..|.+
T Consensus 141 ~liViDSv~al~~ 153 (349)
T 2zr9_A 141 DIIVIDSVAALVP 153 (349)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEECCCCCCC
T ss_conf 2999978655688
No 157
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.39 E-value=0.048 Score=30.18 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 99999999986147995898758998888999999862
Q T0567 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 10 m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
+..++.-++.. ....-++|+|+++|||+++|.+|-..
T Consensus 113 l~~l~~~l~~~-PKknci~~~GPpnTGKS~fa~aL~~~ 149 (305)
T 2v9p_A 113 INALKLWLKGI-PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHHHHTC-TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999998289-97508999889988889999999998
No 158
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=94.35 E-value=0.023 Score=31.89 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.=|.|.|+.||||+++|+.+...
T Consensus 7 ~iI~I~g~~GsGKsTva~~La~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 58996489988879999999999
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.32 E-value=0.24 Score=26.46 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHH-HHHHHHHHCCCCCCCCCEECCCCCCHHHHHHH
Q ss_conf 8987589988889-99999862124267852412578898888999
Q T0567 27 VWLYGAPGTGRMT-GARYLHQFGRNAQGEFVYRELTPDNAPQLNDF 71 (145)
Q Consensus 27 vli~Ge~GtGK~~-~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~ 71 (145)
+++.|..|+||++ +|++-|....+. .....+.|....+...+++
T Consensus 103 i~~vG~~G~GKTTT~aKLA~~~~~~g-~kv~lva~Dt~R~aA~eQL 147 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRG-YKVGVVCSDTWRPGAYHQL 147 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEECCCSSTHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCC-CEEEEEEECCCCCHHHHHH
T ss_conf 65224666664068899999999639-8268997300000166788
No 160
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP PSI; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.31 E-value=0.023 Score=31.85 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
-.||+|.|++|+||+++++.+-..
T Consensus 12 ~p~Ivl~GpSGsGK~tL~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 983899899999999999999974
No 161
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=94.30 E-value=0.025 Score=31.71 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5898758998888999999862
Q T0567 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.+-|+|.+||||+++|+++-..
T Consensus 3 ~IgItG~~GSGKStva~~l~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999789978799999999987
No 162
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.28 E-value=0.099 Score=28.48 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 658989999999999861479958987589988889999998621242678524
Q T0567 4 IGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVY 57 (145)
Q Consensus 4 iG~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~ 57 (145)
+|-++...+..+.+ ......=|++.|++|+||++...++-..-.+....++.
T Consensus 149 Lg~~~~~~~~l~~l--~~~~~GlilitGpTGSGKSTTl~a~l~~i~~~~r~iiT 200 (418)
T 1p9r_A 149 LGMTAHNHDNFRRL--IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILT 200 (418)
T ss_dssp SCCCHHHHHHHHHH--HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEE
T ss_pred CCCCHHHHHHHHHH--HHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 59977789999999--86589779996789886426899875461468845999
No 163
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.24 E-value=0.074 Score=29.16 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHCCC--CCEEEECC-CCCCHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 89999999999861479--95898758-998888999999862124267852412578
Q T0567 8 EWINQYRRRLQQLSETD--IAVWLYGA-PGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
Q Consensus 8 ~~m~~l~~~i~~~a~~~--~pvli~Ge-~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~ 62 (145)
++++.+|..+....... .-|+|+|. +|.||+++|..+-..-.+.......+||..
T Consensus 86 Ea~r~lrt~l~~~~~~~~~~vI~VtS~~~G~GKTTia~nLA~~lA~~G~rVLlID~D~ 143 (299)
T 3cio_A 86 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp HHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999999998774269998399998999799889999999999997799589984589
No 164
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.21 E-value=0.029 Score=31.39 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=22.6
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 1479958987589988889999998621
Q T0567 21 SETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~~iH~~s 48 (145)
+.....|.|.|++|+||+++++.|...-
T Consensus 17 ~~~gkiIvi~GpsGsGK~Tl~~~L~~~~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8788089998989999999999999568
No 165
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.18 E-value=0.014 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCCCCE--EEECCCCCCHHHHHHHHHHHC
Q ss_conf 999999861479958--987589988889999998621
Q T0567 13 YRRRLQQLSETDIAV--WLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 13 l~~~i~~~a~~~~pv--li~Ge~GtGK~~~A~~iH~~s 48 (145)
+.++-++++....|. .|.|..|+||+++++.|....
T Consensus 7 ~~~~~~~~~~~~~p~~I~ieG~~GsGKST~~~~L~~~l 44 (230)
T 2vp4_A 7 CARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYK 44 (230)
T ss_dssp -----CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred HHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 24237723689986499998999875999999999975
No 166
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.14 E-value=0.2 Score=26.88 Aligned_cols=109 Identities=10% Similarity=0.141 Sum_probs=59.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHH------CCCEEEECCHHHCCHHHHHH--
Q ss_conf 9958987589988889999998621242678524125788988889999862------58748743742068778999--
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALA------QGGTLVLSHPEHLTREQQYH-- 95 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a------~gGtL~l~ei~~L~~~~Q~~-- 95 (145)
..-++|.|.+|+||++++..|...+ +...+.+-...+...+..++.+.. ...+++... ..-|+..+..
T Consensus 157 GQr~~i~~~~g~GKt~Ll~~i~~~~---~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~t~vv~~~-~~~~~~~r~~~~ 232 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT---RADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP-ADVSPLLRMQGA 232 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC-TTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCC---CCCCEEEEEEEEECCCCHHHHHHHCCCCCEEEEEEEECC-CCCCHHHHHHHH
T ss_conf 5403456754203799976420023---687248887126723002033443057751445788615-768989998887
Q ss_pred -----HHHHHHHCCHHHEEEECCCCCHHHHH-----------HCCCCCHHHHHHHCC
Q ss_conf -----99998721401001114776878998-----------708976565575544
Q T0567 96 -----LVQLQSQEHRPFRLIGIGDTSLVELA-----------ASNHIIAELYYCFAM 136 (145)
Q Consensus 96 -----L~~~l~~~~~~~RiI~~s~~~l~~l~-----------~~~~~~~~L~~~ls~ 136 (145)
+++++..+..++-++.-+-....+.. ..+.+.+++|+.++.
T Consensus 233 ~~a~~~AE~f~~~G~~Vl~~~Dsltr~A~A~reis~~~g~~p~~~gyp~~~~~~~~~ 289 (438)
T 2dpy_A 233 AYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPA 289 (438)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 789988888887498530231426788998652354348996323443102234577
No 167
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.11 E-value=0.23 Score=26.53 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCC--EEEECCCCCCHHHHHHHHHHHCCCC-CCC---CCEECCCCCC
Q ss_conf 995--8987589988889999998621242-678---5241257889
Q T0567 24 DIA--VWLYGAPGTGRMTGARYLHQFGRNA-QGE---FVYRELTPDN 64 (145)
Q Consensus 24 ~~p--vli~Ge~GtGK~~~A~~iH~~s~~~-~~~---fv~~~~~~~~ 64 (145)
..| |-|.|.+|+||+++|+.|...-.+. .++ .+..|....+
T Consensus 78 k~P~iIGIaG~sgSGKST~a~~L~~~L~~~~~~~~v~~is~D~F~~~ 124 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP 124 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCEEECC
T ss_conf 99889998679999877899999999731358995399821135788
No 168
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A*
Probab=94.10 E-value=0.16 Score=27.37 Aligned_cols=22 Identities=14% Similarity=0.037 Sum_probs=17.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.-+.|.|+||+||+.+|--+-.
T Consensus 99 ~i~~i~G~pG~GKT~l~lq~a~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 4999971798865199999999
No 169
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.09 E-value=0.099 Score=28.49 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=41.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC-CHHHH------------------HHH-------HHHHCCC
Q ss_conf 958987589988889999998621242678524125788-98888------------------999-------9862587
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD-NAPQL------------------NDF-------IALAQGG 78 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~-~~~~~------------------~~~-------l~~a~gG 78 (145)
.=+-|+|+++|||+++|-.+-.......+..+.+|+... +.... ++. .....-.
T Consensus 75 ritei~G~~~sGKTtlal~~~~~aqk~gg~~~yiDtE~~~d~~~a~~~Gvd~~~llv~~~~~~E~~l~i~~~li~~~~~~ 154 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 59999357774068999999999960798089980125749999986699810189975898999999999998558977
Q ss_pred EEEECCHHHCCH
Q ss_conf 487437420687
Q T0567 79 TLVLSHPEHLTR 90 (145)
Q Consensus 79 tL~l~ei~~L~~ 90 (145)
.+++|-+..|.+
T Consensus 155 liVvDSv~al~~ 166 (366)
T 1xp8_A 155 VVVVDSVAALTP 166 (366)
T ss_dssp EEEEECTTTCCC
T ss_pred EEEEECCCCCCC
T ss_conf 899816112355
No 170
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7}
Probab=94.06 E-value=0.029 Score=31.37 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=20.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7995898758998888999999862
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
...||.|.|+.|+||+++++.+-..
T Consensus 22 ~~~pIvl~GPsGsGK~tl~~~L~~~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8877999999999999999999960
No 171
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.05 E-value=0.033 Score=31.08 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
+-+.|.|..|+||+++|+.|...
T Consensus 1 M~I~ieG~~GsGKST~a~~L~~~ 23 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98999889877899999999998
No 172
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.02 E-value=0.27 Score=26.11 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=18.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHH
Q ss_conf 4799589875899888899999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
...+.+|++|.+|+|||.+|-.
T Consensus 622 ~~~~d~Ll~gdtG~GKT~v~~~ 643 (1151)
T 2eyq_A 622 PLAMDRLVCGDVGFGKTEVAMR 643 (1151)
T ss_dssp SSCCEEEEECCCCTTTHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHH
T ss_conf 8601157770678517999999
No 173
>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.98 E-value=0.03 Score=31.28 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=17.9
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-+.|.|+.||||+++|+.+..
T Consensus 16 iI~Isg~~GsGKSTva~~La~ 36 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAE 36 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 998458998997999999999
No 174
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.76 E-value=0.31 Score=25.85 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=25.5
Q ss_pred EEEECCCCCCHHH-HHHHHHHHCCCCCCCCCEECCCCCCHHHHHH
Q ss_conf 8987589988889-9999986212426785241257889888899
Q T0567 27 VWLYGAPGTGRMT-GARYLHQFGRNAQGEFVYRELTPDNAPQLND 70 (145)
Q Consensus 27 vli~Ge~GtGK~~-~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~ 70 (145)
+++.|.+|+||++ +|++-|..... ......+.|........++
T Consensus 160 illvG~~GvGKTTTiaKLA~~~~~~-g~kv~l~a~Dt~R~aAveQ 203 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQ 203 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHH
T ss_conf 9998268896273899999999973-8974155126666569999
No 175
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.75 E-value=0.034 Score=30.96 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-|-|-|++||||+++|+.|..
T Consensus 16 ~~~IaIDGPagSGKSTvak~LAk 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 72899879997888999999999
No 176
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.74 E-value=0.18 Score=27.06 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=60.1
Q ss_pred CCCEEEECCCCCCHHHHHH--HHHHHCCCCCCCCCEEC-CCCCCHHHHHHHHHHH-----CCCEEEECCHHHCCHHHHHH
Q ss_conf 9958987589988889999--99862124267852412-5788988889999862-----58748743742068778999
Q T0567 24 DIAVWLYGAPGTGRMTGAR--YLHQFGRNAQGEFVYRE-LTPDNAPQLNDFIALA-----QGGTLVLSHPEHLTREQQYH 95 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~--~iH~~s~~~~~~fv~~~-~~~~~~~~~~~~l~~a-----~gGtL~l~ei~~L~~~~Q~~ 95 (145)
..-++|.|..||||+.++. .++.. ....+++= +..+...+..++++.- -.-|.++-.-...|...|..
T Consensus 175 Gqr~~I~g~~g~GKt~l~~~~~~~~~----~~~~~~V~~~iGer~~ev~~~~~~~~~~~~~~~tvvv~~~~~~~~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 87788866888887899999988753----04876999703540131999999876438630028999879999999998
Q ss_pred -------HHHHHHHCCHHHEEEECCCCCHHHH-----------HHCCCCCHHHHHHHCCC
Q ss_conf -------9999872140100111477687899-----------87089765655755442
Q T0567 96 -------LVQLQSQEHRPFRLIGIGDTSLVEL-----------AASNHIIAELYYCFAMT 137 (145)
Q Consensus 96 -------L~~~l~~~~~~~RiI~~s~~~l~~l-----------~~~~~~~~~L~~~ls~~ 137 (145)
+++++..+..++-++.-+-....+. .....+.+++|+.++.+
T Consensus 251 a~~~a~tiAEyfr~~g~~Vl~~~D~~tr~A~A~REisl~l~e~P~~~gYp~~vf~~~s~l 310 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRL 310 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 876762008889856995799970737999999999986489997778096088787899
No 177
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3}
Probab=93.67 E-value=0.065 Score=29.46 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=19.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-++|.|++|+||+.++..+-.
T Consensus 22 ~G~~~~i~G~~G~GKT~l~~~la~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 983999997999889999999999
No 178
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.65 E-value=0.043 Score=30.41 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 4799589875899888899999986
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
....|+.|.|+.|+||+++++.+-.
T Consensus 3 ~m~k~ivi~GpSG~GK~tl~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8877299999998998999999997
No 179
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.60 E-value=0.33 Score=25.69 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=21.5
Q ss_pred CEEEECCCCCCHHH-HHHHHHHHCCCCCCCCCEECCCCCCH
Q ss_conf 58987589988889-99999862124267852412578898
Q T0567 26 AVWLYGAPGTGRMT-GARYLHQFGRNAQGEFVYRELTPDNA 65 (145)
Q Consensus 26 pvli~Ge~GtGK~~-~A~~iH~~s~~~~~~fv~~~~~~~~~ 65 (145)
.+++.|+.|+||++ +|+.-+... ........+.|....+
T Consensus 106 vi~~vG~~G~GKTTt~aKLA~~~~-~~~~~v~l~~~Dt~R~ 145 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRA 145 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHH-HCCCEEEEEECCCCCC
T ss_conf 887415556676416999999998-5798479983365331
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.60 E-value=0.33 Score=25.68 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHH-HHHHHHHHC
Q ss_conf 8987589988889-999998621
Q T0567 27 VWLYGAPGTGRMT-GARYLHQFG 48 (145)
Q Consensus 27 vli~Ge~GtGK~~-~A~~iH~~s 48 (145)
+++.|++|+||++ +|+.-+...
T Consensus 132 illvG~~G~GKTTT~aKLA~~~~ 154 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99966877875430899999999
No 181
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.58 E-value=0.19 Score=27.00 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=18.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHH
Q ss_conf 4799589875899888899999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
..+.++++..|+|+|||.+|..
T Consensus 37 ~~g~n~lv~aPTGsGKT~va~l 58 (720)
T 2zj8_A 37 LEGKNALISIPTASGKTLIAEI 58 (720)
T ss_dssp GGTCEEEEECCGGGCHHHHHHH
T ss_pred HCCCCEEEECCCCCCHHHHHHH
T ss_conf 7799689980998619999999
No 182
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.57 E-value=0.12 Score=27.97 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCC------CCCCCCCEECCCC
Q ss_conf 9589875899888899999986212------4267852412578
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGR------NAQGEFVYRELTP 62 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~------~~~~~fv~~~~~~ 62 (145)
.-..|+|++||||+.+|--+-.... ...+..+++++..
T Consensus 132 ~itei~G~~GsGKTqlalqla~~~~~~~e~~g~~g~vlyIdtE~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 28999818998799999999999987799725798479985688
No 183
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding protein; HET: DNA; 2.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.37.1.19
Probab=93.57 E-value=0.23 Score=26.57 Aligned_cols=87 Identities=16% Similarity=0.067 Sum_probs=44.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHH------------------------------
Q ss_conf 79958987589988889999998621242678524125788988889999------------------------------
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFI------------------------------ 72 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l------------------------------ 72 (145)
.....++..++|+||+.+|-.+-.... ..-+|.++. ..-..+|.+-+
T Consensus 107 ~~~~glv~~pTGsGKT~ia~~~~~~~~--~~~LiivP~-~~L~~Qw~~~~~~~~~~~~~~~~g~~~~~~~i~i~t~~s~~ 183 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAINELS--TPTLIVVPT-LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHHHHSC--SCEEEEESS-HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHC--CCEEEECCC-HHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECHHHHHHH
T ss_conf 689959991899898999999999838--997999071-77799999999985010210342553446531100278998
Q ss_pred ---HH--HCCCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCC
Q ss_conf ---86--25874874374206877899999998721401001114776
Q T0567 73 ---AL--AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
Q Consensus 73 ---~~--a~gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~ 115 (145)
+. ..=+.+++||++.++.+.-..++ .......|+..|.+-
T Consensus 184 ~~~~~~~~~~~lIIiDEaH~~~~~~~~~i~---~~~~~~~~LgLTATP 228 (237)
T 2fz4_A 184 VNAEKLGNRFMLLIFDEVHHLPAESYVQIA---QMSIAPFRLGLTATF 228 (237)
T ss_dssp HTHHHHTTTCSEEEEECSSCCCTTTHHHHH---HTCCCSEEEEEEESC
T ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHH---HCCCCCCEEEEECCC
T ss_conf 768851786658999796307877999998---607888089992389
No 184
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.49 E-value=0.1 Score=28.37 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHH-----CCCCCEEEECCCCCCHHHHHHHHHHH-CCCC----------------CCCCCEECCCCCC-
Q ss_conf 89999999999861-----47995898758998888999999862-1242----------------6785241257889-
Q T0567 8 EWINQYRRRLQQLS-----ETDIAVWLYGAPGTGRMTGARYLHQF-GRNA----------------QGEFVYRELTPDN- 64 (145)
Q Consensus 8 ~~m~~l~~~i~~~a-----~~~~pvli~Ge~GtGK~~~A~~iH~~-s~~~----------------~~~fv~~~~~~~~- 64 (145)
..+.++=+.+.+.- ....-|++.|+-|+||++++|.+-.. +... +.+++-+|+...+
T Consensus 12 ~~T~~lg~~la~~l~~~~~~~g~vi~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~~Y~~~~~~i~H~DlYRl~~ 91 (158)
T 1htw_A 12 FSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLAD 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECTTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 99999999999998753689986999987876899999999999768778777995055564406887276888860599
Q ss_pred HHHHHH--HHHH-HCCCEEEECCHHHCCHH
Q ss_conf 888899--9986-25874874374206877
Q T0567 65 APQLND--FIAL-AQGGTLVLSHPEHLTRE 91 (145)
Q Consensus 65 ~~~~~~--~l~~-a~gGtL~l~ei~~L~~~ 91 (145)
..++.. +.+. ..+++.+++=.+.++..
T Consensus 92 ~~e~~~lg~~e~~~~~~i~~IEWpe~~~~~ 121 (158)
T 1htw_A 92 PEELEFMGIRDYFNTDSICLIEWSEKGQGI 121 (158)
T ss_dssp TTHHHHSTHHHHHSSSCEEEEESGGGGTTT
T ss_pred HHHHHHCCHHHHHCCCCEEEEECCHHHHHC
T ss_conf 788762354776168989999993213332
No 185
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.42 E-value=0.042 Score=30.50 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.3
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-|-|-|++||||+++|+.|-
T Consensus 4 i~IaIDGpagSGKsT~ak~LA 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 599987898678899999999
No 186
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.37 E-value=0.055 Score=29.86 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
++|+|.+|+||+++++.|-.
T Consensus 4 ivi~G~~GsGKtT~~~~L~~ 23 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999698999999999
No 187
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.34 E-value=0.36 Score=25.45 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=16.4
Q ss_pred EEEECCCCCCHH-HHHHHHHHHC
Q ss_conf 898758998888-9999998621
Q T0567 27 VWLYGAPGTGRM-TGARYLHQFG 48 (145)
Q Consensus 27 vli~Ge~GtGK~-~~A~~iH~~s 48 (145)
+++.|++|+||+ ++|+.-|...
T Consensus 103 i~lvGp~GvGKTTTiaKLA~~~~ 125 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978888965869999999999
No 188
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.33 E-value=0.15 Score=27.50 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=35.1
Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCCCEECCCCCCHHHH---HHHHHHHCCCEEEEC
Q ss_conf 1479958987589988889999998621-24267852412578898888---999986258748743
Q T0567 21 SETDIAVWLYGAPGTGRMTGARYLHQFG-RNAQGEFVYRELTPDNAPQL---NDFIALAQGGTLVLS 83 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~~iH~~s-~~~~~~fv~~~~~~~~~~~~---~~~l~~a~gGtL~l~ 83 (145)
.+-..-|+++|=.|+||+++|+++...- .......+.+.-. .+..++ ..-+.++..|.++-+
T Consensus 392 ~kqG~tiffTGlsgsGKstiA~~l~~~l~e~g~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 457 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH-NNKTELLSLIQDFIGSGSGLIIPD 457 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC-TTCHHHHTTHHHHHHTTCEEEESS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 348359997279998889999999999986068558873155-874337899999973596379648
No 189
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.27 E-value=0.11 Score=28.20 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=17.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHH
Q ss_conf 7995898758998888999999
Q T0567 23 TDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~i 44 (145)
...-++|.|++|+||+.+|--+
T Consensus 29 ~g~~~~i~G~~G~GKT~l~~~~ 50 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHH
T ss_conf 9859999978999989999999
No 190
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.27 E-value=0.065 Score=29.47 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=19.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 479958987589988889999998
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
....-|+|.|++|+||++++.++-
T Consensus 23 ~~~Glili~GptgSGKTT~l~all 46 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 589889998999998999999999
No 191
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.24 E-value=0.046 Score=30.26 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
|-|+|..||||+++|+++..
T Consensus 4 IgltG~igSGKsTva~~l~~ 23 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99979998669999999998
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.15 E-value=0.049 Score=30.14 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.4
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
..||+.|++|+||+++-.+|-
T Consensus 32 ~~iLVvG~tGsGKSTliNaL~ 52 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 499998899893999999996
No 193
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.15 E-value=0.39 Score=25.28 Aligned_cols=98 Identities=9% Similarity=0.062 Sum_probs=51.2
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHH--HHHHCCCCCCCCCEECCCCC---------------------------------
Q ss_conf 8614799589875899888899999--98621242678524125788---------------------------------
Q T0567 19 QLSETDIAVWLYGAPGTGRMTGARY--LHQFGRNAQGEFVYRELTPD--------------------------------- 63 (145)
Q Consensus 19 ~~a~~~~pvli~Ge~GtGK~~~A~~--iH~~s~~~~~~fv~~~~~~~--------------------------------- 63 (145)
.....+..|++..++||||+..+-. ++........+...+-|..-
T Consensus 62 p~il~g~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~lil~pt~ela~qi~~~~~~l~~~~~~~~~~~~~~~~~~~~ 141 (237)
T 3bor_A 62 IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE 141 (237)
T ss_dssp HHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------
T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf 99977998899877999742876168776201124786147605878987688766645420578615777368772999
Q ss_pred --------------CHHHHHHHHHHH-----CCCEEEECCHHHCCHH-HHHHHHHHHHHCCHHHEEEE-CCCCC
Q ss_conf --------------988889999862-----5874874374206877-89999999872140100111-47768
Q T0567 64 --------------NAPQLNDFIALA-----QGGTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIG-IGDTS 116 (145)
Q Consensus 64 --------------~~~~~~~~l~~a-----~gGtL~l~ei~~L~~~-~Q~~L~~~l~~~~~~~RiI~-~s~~~ 116 (145)
++..+..++... .--++++||.|.+-.. ....+.++++.-..+.++|+ |++.+
T Consensus 142 ~~~l~~~~~~ili~TP~~l~~~~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~v~~I~~~l~~~~Q~i~~SAT~~ 215 (237)
T 3bor_A 142 MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp ------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred HHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 99997389999993967899999748986455429983167776425869999999986899886999981499
No 194
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.10 E-value=0.051 Score=30.06 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=20.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-|.|.|+.|+||+++++.|-.
T Consensus 30 ~Ge~vaIvG~sGsGKSTLl~~l~g 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999999999999999999985
No 195
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.08 E-value=0.045 Score=30.34 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5898758998888999999862
Q T0567 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
-|.|+|.+||||+++++.++..
T Consensus 172 rI~i~G~~stGKTTL~~~L~~~ 193 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999827878879999999999
No 196
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.07 E-value=0.048 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.472 Sum_probs=21.2
Q ss_pred HHCCCCC--EEEECCCCCCHHHHHHHHHH
Q ss_conf 6147995--89875899888899999986
Q T0567 20 LSETDIA--VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 20 ~a~~~~p--vli~Ge~GtGK~~~A~~iH~ 46 (145)
.+....| |+|.|++||||+.+|-.+..
T Consensus 4 ~~~~~~p~ii~I~GpTasGKS~La~~lA~ 32 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 77788995699989883279999999999
No 197
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.07 E-value=0.16 Score=27.33 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=22.0
Q ss_pred HHHHHHHHHCC--CCCE--EEECCCCCCHHHHHHHHHH
Q ss_conf 99999986147--9958--9875899888899999986
Q T0567 13 YRRRLQQLSET--DIAV--WLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 13 l~~~i~~~a~~--~~pv--li~Ge~GtGK~~~A~~iH~ 46 (145)
+...+.....+ ..|+ -|.|.+|+||+++|..|..
T Consensus 16 ~~~~~~~~~~~~~~~P~iigiaG~qGSGKSTl~~~l~~ 53 (290)
T 1odf_A 16 LDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp HHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999997525899998998378987889999999999
No 198
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.02 E-value=0.044 Score=30.36 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 99589875899888899999986212426785241257
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT 61 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~ 61 (145)
+.|++|.|.+|+||+.....+-........+.+.+|-.
T Consensus 53 ~~H~lI~G~TGsGKT~~~~~li~~~~~~g~~~ii~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 36589992799988999999999998589988999796
No 199
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.00 E-value=0.053 Score=29.96 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.6
Q ss_pred CC-EEEECCCCCCHHHHHHHHHH
Q ss_conf 95-89875899888899999986
Q T0567 25 IA-VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~p-vli~Ge~GtGK~~~A~~iH~ 46 (145)
.| |-|-|++||||+++|+.|..
T Consensus 5 ~pIIaIDGpagSGKSTiAk~LA~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 97898778986788999999999
No 200
>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A
Probab=93.00 E-value=0.048 Score=30.19 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=64.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHH------------HCCCEEEECCHHHCCHH
Q ss_conf 995898758998888999999862124267852412578898888999986------------25874874374206877
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIAL------------AQGGTLVLSHPEHLTRE 91 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~------------a~gGtL~l~ei~~L~~~ 91 (145)
..-.+|.|.+||||+.++..|-..+. .-.+..-+..+...+..++++. +-.-|.++-+-...|..
T Consensus 227 Gqr~~I~g~~g~GKt~l~~~i~~~~~---~~~~V~~~iGer~~ev~~~~~~~~~~~d~~~g~~~m~~tvvv~~ts~~p~~ 303 (588)
T 3i4l_A 227 GGTAAIPGPFGSGKTVTQHQLAKWSD---AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVA 303 (588)
T ss_dssp TCEEEEESCTTCTTCCHHHHHHHHSS---CSEEEEECCSBCGGGGTTTTSSTTTCBCTTTSSBGGGGEEEECCBTTSCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC---CCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH
T ss_conf 76037767888881499999875268---880689985100177888898666516764442000010267426779999
Q ss_pred HHHH-------HHHHHHHCCHHHEEEECCCCCHHH-----------HHHCCCCCHHHHHHHCCC
Q ss_conf 8999-------999987214010011147768789-----------987089765655755442
Q T0567 92 QQYH-------LVQLQSQEHRPFRLIGIGDTSLVE-----------LAASNHIIAELYYCFAMT 137 (145)
Q Consensus 92 ~Q~~-------L~~~l~~~~~~~RiI~~s~~~l~~-----------l~~~~~~~~~L~~~ls~~ 137 (145)
.|.. +++++.....++-++..+.....+ ......+..++|+.++.+
T Consensus 304 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~l~e~Pgr~gYP~~l~s~la~l 367 (588)
T 3i4l_A 304 AREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEF 367 (588)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEECCCSCCTTSCC----CCCSSCSSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9877765557999999984997689750607888872000454579986566774366776778
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequence; 3.50A {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A
Probab=92.92 E-value=0.42 Score=25.09 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=24.2
Q ss_pred EEEECCCCCCHH-HHHHHHHHHCCCCCCCCCEECCCCCCHHHHHH
Q ss_conf 898758998888-99999986212426785241257889888899
Q T0567 27 VWLYGAPGTGRM-TGARYLHQFGRNAQGEFVYRELTPDNAPQLND 70 (145)
Q Consensus 27 vli~Ge~GtGK~-~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~ 70 (145)
+++.|..|+||+ ++|++-|....+. .....+.|....+...++
T Consensus 100 I~lvG~~G~GKTTTiaKLA~~~~~~g-~kV~lva~Dt~R~aA~eQ 143 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG-YKVGLVAADVYRPAAYDQ 143 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT-CCEEEEEECCSCHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHH
T ss_conf 99975887870336999999998549-726998437747677999
No 202
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.91 E-value=0.4 Score=25.21 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHH
Q ss_conf 4799589875899888899999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
..+..+++.-|+|+||+.+|..
T Consensus 44 ~~g~n~lv~aPTGsGKTl~~~l 65 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHH
T ss_pred HCCCCEEEECCCCCHHHHHHHH
T ss_conf 6799699981998539999999
No 203
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A*
Probab=92.88 E-value=0.058 Score=29.72 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
....=++++|++||||++...++
T Consensus 134 ~~~Glilv~GpTGSGKTTtl~a~ 156 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASM 156 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 37987999789998578999999
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.78 E-value=0.12 Score=28.02 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 79958987589988889999998
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
...-++|.|++|+||+++|-.+-
T Consensus 19 ~g~~~~l~G~~G~GKTtlal~~a 41 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 88699999189998999999999
No 205
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.75 E-value=0.21 Score=26.75 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC------CCCCCCCEECCCC
Q ss_conf 799589875899888899999986212------4267852412578
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGR------NAQGEFVYRELTP 62 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~------~~~~~fv~~~~~~ 62 (145)
...-.+|+|++||||+.+|--+-.... ...+..++++...
T Consensus 177 ~G~IteI~G~pGSGKTqLalqlav~~~l~~e~gg~ggkvvyIDTE~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 8848999748988889999999999976687605898579997899
No 206
>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.048 Score=30.16 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHCCCCCEEEECCCCCCHH-HHHHHHHHH
Q ss_conf 99986147995898758998888-999999862
Q T0567 16 RLQQLSETDIAVWLYGAPGTGRM-TGARYLHQF 47 (145)
Q Consensus 16 ~i~~~a~~~~pvli~Ge~GtGK~-~~A~~iH~~ 47 (145)
++-..-..+.-++|.||+||||+ .+-.+|...
T Consensus 101 ~il~~i~~~~v~ii~G~TGsGKTTqvPq~ll~~ 133 (767)
T 3kx2_B 101 EFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFD 133 (767)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999979979998499898777999999984
No 207
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.67 E-value=0.098 Score=28.52 Aligned_cols=115 Identities=7% Similarity=0.002 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH-HHHCCCCCCCCCEECCCCCCHHHHHHHHHHHC-CCEEEECCHHHC
Q ss_conf 9999999986147995898758998888999999-86212426785241257889888899998625-874874374206
Q T0567 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYL-HQFGRNAQGEFVYRELTPDNAPQLNDFIALAQ-GGTLVLSHPEHL 88 (145)
Q Consensus 11 ~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~i-H~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a~-gGtL~l~ei~~L 88 (145)
..++..++.. .-..-++|+|+++|||+++|.+| |... +..+ +-... ...-.++.+. ....+++|....
T Consensus 46 ~~l~~~l~~~-PKknci~~~GPp~TGKS~fa~sL~~~l~----G~vi--~~~N~---~s~F~Lq~l~d~ki~l~dD~t~~ 115 (212)
T 1tue_A 46 GALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ----GAVI--SFVNS---TSHFWLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp HHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT----CEEC--CCCCS---SSCGGGGGGTTCSSEEEEEECHH
T ss_pred HHHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHHC----CEEE--ECCCC---CCCCCCCCCCCCCEEEEECCCCC
T ss_conf 9999998189-8751899988998558899999999847----7267--40567---78764665678818999667650
Q ss_pred CHHHHHH-HHHHHHHCCH-------------HHEEEECCCCCHHHHHHCCCCCHHHHHHHCCCEE
Q ss_conf 8778999-9999872140-------------1001114776878998708976565575544226
Q T0567 89 TREQQYH-LVQLQSQEHR-------------PFRLIGIGDTSLVELAASNHIIAELYYCFAMTQI 139 (145)
Q Consensus 89 ~~~~Q~~-L~~~l~~~~~-------------~~RiI~~s~~~l~~l~~~~~~~~~L~~~ls~~~i 139 (145)
.-..-+. +-.+++.... ..-+|.+|+.++. ...-...|..|+-.++.
T Consensus 116 ~~~~~d~~lK~~ldG~~vsvd~Khk~~~qi~~pPliITsN~di~----~~d~~~yL~sRi~~f~F 176 (212)
T 1tue_A 116 CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPA----KDNRWPYLESRITVFEF 176 (212)
T ss_dssp HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTT----SSSSCHHHHTSCEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC----CCCCCHHHHHEEEEEEC
T ss_conf 46777899885359984676236798620358988998378988----66553535651799887
No 208
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.66 E-value=0.46 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=17.8
Q ss_pred EEEECCCCCCHH-HHHHHHHHHCCC
Q ss_conf 898758998888-999999862124
Q T0567 27 VWLYGAPGTGRM-TGARYLHQFGRN 50 (145)
Q Consensus 27 vli~Ge~GtGK~-~~A~~iH~~s~~ 50 (145)
+++.|..|+||| ++|++-|....+
T Consensus 104 I~lvGlqG~GKTTT~aKLA~~~~~~ 128 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9986688888444499999999861
No 209
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.65 E-value=0.064 Score=29.51 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=20.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-|.|.|+.|+||+++++.|-.
T Consensus 34 ~Ge~vaIvG~sGsGKSTLl~ll~g 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999849999999967
No 210
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.59 E-value=0.14 Score=27.68 Aligned_cols=105 Identities=8% Similarity=-0.011 Sum_probs=51.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHCC-CEEEECCHHHCCHHHHHHHHHHHHHC
Q ss_conf 95898758998888999999862124267852412578898888999986258-74874374206877899999998721
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQG-GTLVLSHPEHLTREQQYHLVQLQSQE 103 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a~g-GtL~l~ei~~L~~~~Q~~L~~~l~~~ 103 (145)
.-++|+|+++|||++++.+|...-..- ..++-.. + + ..++...| -.++++|...-... ...+-.++..+
T Consensus 105 n~~~l~Gp~~tGKS~f~~~i~~~~g~~----~~~~~~~-~--~--F~l~~l~~kr~~~~~e~~~~~~~-~~~~K~l~gGd 174 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPFY----GCVNWTN-E--N--FPFNDCVDKMVIWWEEGKMTAKV-VESAKAILGGS 174 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCE----EECCTTC-S--S--CTTGGGSSCSEEEECSCCEETTT-HHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC----CCCCCCC-C--C--CCCCCCCCCEEEEEECCCCCHHH-HHHHHHHCCCC
T ss_conf 599998899887899999999980744----2013557-8--8--76632369879999589973228-99999865798
Q ss_pred CH--------------HHEEEECCCCCHHHHHH----CCCCCHHHHHHHCCCEEE
Q ss_conf 40--------------10011147768789987----089765655755442265
Q T0567 104 HR--------------PFRLIGIGDTSLVELAA----SNHIIAELYYCFAMTQIA 140 (145)
Q Consensus 104 ~~--------------~~RiI~~s~~~l~~l~~----~~~~~~~L~~~ls~~~i~ 140 (145)
.. ...+|.+.+ ++..... ...-...|+.|+-.+.+.
T Consensus 175 ~v~vd~K~k~~~~~~~~p~li~snn-di~~~~~~~~~~~d~~~~l~~R~~~~~F~ 228 (267)
T 1u0j_A 175 KVRVDQKCKSSAQIDPTPVIVTSNT-NMCAVIDGNSTTFEHQQPLQDRMFKFELT 228 (267)
T ss_dssp CEEC------CCEECCCCEEEEESS-CTTCEEETTEEECTTHHHHHTTEEEEECC
T ss_pred CEEEECCCCCCEEEECCEEEEEECC-CCCCCCCCCCCCCCCCHHHHHHEEEEECC
T ss_conf 1687503598617657738999588-65545677865541024656608998789
No 211
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.58 E-value=0.12 Score=28.12 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=22.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 4799589875899888899999986212
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH~~s~ 49 (145)
....-+.|.|+.|+||+++++.|...-+
T Consensus 367 ~~G~~i~IvG~sGsGKSTLlkll~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 8997599861688835348788545666
No 212
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.49 E-value=0.49 Score=24.77 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHH-HHHHHHHHC
Q ss_conf 8987589988889-999998621
Q T0567 27 VWLYGAPGTGRMT-GARYLHQFG 48 (145)
Q Consensus 27 vli~Ge~GtGK~~-~A~~iH~~s 48 (145)
+++.|++|+||++ +|++-+...
T Consensus 101 il~vG~~G~GKTTT~aKLA~~~~ 123 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99846655562157999999999
No 213
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=92.48 E-value=0.49 Score=24.76 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
+++.|++|+||++.+.=+
T Consensus 101 ~~lvG~~G~GKTTTiaKL 118 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp EEEECCTTTTHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHH
T ss_conf 999678888712279999
No 214
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.47 E-value=0.07 Score=29.31 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-+.|.|+.|+||+++++.|-.
T Consensus 44 ~Ge~vaIvG~sGsGKSTLl~ll~g 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999879999999966
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.45 E-value=0.49 Score=24.74 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=35.2
Q ss_pred CEEEECCCCCCHHH-HHHHHHHHCCCCCC-CCCEECCCCCCH-HHHHHHH------------------------HH---H
Q ss_conf 58987589988889-99999862124267-852412578898-8889999------------------------86---2
Q T0567 26 AVWLYGAPGTGRMT-GARYLHQFGRNAQG-EFVYRELTPDNA-PQLNDFI------------------------AL---A 75 (145)
Q Consensus 26 pvli~Ge~GtGK~~-~A~~iH~~s~~~~~-~fv~~~~~~~~~-~~~~~~l------------------------~~---a 75 (145)
.+++.|++|+||++ +|+.-+....+... -++..|+....+ .++..+. .. .
T Consensus 104 vi~lvG~~G~GKTTt~aKlA~~~~~~~~kv~li~~Dt~R~ga~eQL~~~a~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~ 183 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKAR 183 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 99952466777411899999998651154003421420000678999856556850796688720787789999999986
Q ss_pred CCCEEEECCHHHCCHHHH
Q ss_conf 587487437420687789
Q T0567 76 QGGTLVLSHPEHLTREQQ 93 (145)
Q Consensus 76 ~gGtL~l~ei~~L~~~~Q 93 (145)
+.-.+++|-..+++.+.+
T Consensus 184 ~~d~iliDTaGr~~~~~~ 201 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHN 201 (304)
T ss_dssp TCSEEEECCCCCCTTCHH
T ss_pred CCCEEEECCHHCCCCHHH
T ss_conf 999899750430310377
No 216
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.44 E-value=0.07 Score=29.28 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-+.|.|+.|+||+++++.|-.
T Consensus 45 ~G~~vaivG~sGsGKSTLl~ll~g 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 998999998999989999999947
No 217
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=92.33 E-value=0.074 Score=29.16 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=27.6
Q ss_pred CCEEEECCHH-HCCHHHHHHHHHHHHHC--CHHHEEEECCCCCHHH
Q ss_conf 8748743742-06877899999998721--4010011147768789
Q T0567 77 GGTLVLSHPE-HLTREQQYHLVQLQSQE--HRPFRLIGIGDTSLVE 119 (145)
Q Consensus 77 gGtL~l~ei~-~L~~~~Q~~L~~~l~~~--~~~~RiI~~s~~~l~~ 119 (145)
-..|++||+- .|++..+..+.+++.+- ..++-+|.+|+ ++..
T Consensus 164 P~llllDEPTs~LD~~~~~~i~~ll~~l~~~~~~tii~vTH-d~~~ 208 (235)
T 1l2t_A 164 PPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH-DINV 208 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS-CHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC-CHHH
T ss_conf 99999808866579899999999999999954999999889-8899
No 218
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.31 E-value=0.14 Score=27.73 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=52.4
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---------------CCCCEECCCCC--CHHHHHHHHHHH
Q ss_conf 9999998614799589875899888899999986212426---------------78524125788--988889999862
Q T0567 13 YRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ---------------GEFVYRELTPD--NAPQLNDFIALA 75 (145)
Q Consensus 13 l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~---------------~~fv~~~~~~~--~~~~~~~~l~~a 75 (145)
+.++++.......-|++.|++|+||+++...+...-.... .+|...|.... -...+...+..+
T Consensus 5 ~~~~~~~~~~~~~ki~v~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~i~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred HHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99753026888668999999998999999999679875030402625899951998999997788741135677776334
Q ss_pred CCCEEEECCHHHCCH-HHHHHHHHHHHHCC-HHH-EEEECCCCCH
Q ss_conf 587487437420687-78999999987214-010-0111477687
Q T0567 76 QGGTLVLSHPEHLTR-EQQYHLVQLQSQEH-RPF-RLIGIGDTSL 117 (145)
Q Consensus 76 ~gGtL~l~ei~~L~~-~~Q~~L~~~l~~~~-~~~-RiI~~s~~~l 117 (145)
.+-.+++|-.+.-+- +...++.+++.... .++ .++..+..|+
T Consensus 85 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvilv~nK~Dl 129 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 212135760365104668999999998434567868998856666
No 219
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.18 E-value=0.2 Score=26.79 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=23.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 958987589988889999998621242678524125
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL 60 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~ 60 (145)
.-++|.|.||+||+.+|-.+-........+...+++
T Consensus 69 ~L~viag~pg~GKT~lal~ia~~~a~~g~~v~~~Sl 104 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 089998689999799999999999972995499917
No 220
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.13 E-value=0.088 Score=28.77 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|-|+|..||||+++|+++-
T Consensus 5 IgiTG~igSGKStv~~~l~ 23 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988988777999999999
No 221
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.05 E-value=0.56 Score=24.46 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=24.0
Q ss_pred EEEECCCCCCHHHHHHHH-HHHCCCCCCCCCEECCCCCCHHHHHH
Q ss_conf 898758998888999999-86212426785241257889888899
Q T0567 27 VWLYGAPGTGRMTGARYL-HQFGRNAQGEFVYRELTPDNAPQLND 70 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i-H~~s~~~~~~fv~~~~~~~~~~~~~~ 70 (145)
+++.|..|+||++.+.-+ +....+ ......+.|....+...++
T Consensus 101 Il~vG~~G~GKTTT~aKLA~~~~~~-g~kv~lva~Dt~R~aA~eQ 144 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQ 144 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHH
T ss_conf 9997688888120699999999865-9825688445564648999
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.98 E-value=0.18 Score=27.12 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9999999999861479958987589988889999998
Q T0567 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 9 ~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
.+..+.+.++........|.|.|.+|.||+++-.++-
T Consensus 54 ~~~~i~~~l~~~~~~~~~Iai~G~~~~GKSSliNaL~ 90 (413)
T 1tq4_A 54 TNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 9999999999721577079997899986899999995
No 223
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.96 E-value=0.086 Score=28.80 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.||.|+||+++++.|-.
T Consensus 32 Gei~~iiG~sGsGKSTL~~~i~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999739999999973
No 224
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 2.51A {Homo sapiens}
Probab=91.93 E-value=0.57 Score=24.39 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=23.9
Q ss_pred CEEEECCHHHC--CHHHHHHHHHHHHHCCHHHEEE-ECCCCCH
Q ss_conf 74874374206--8778999999987214010011-1477687
Q T0567 78 GTLVLSHPEHL--TREQQYHLVQLQSQEHRPFRLI-GIGDTSL 117 (145)
Q Consensus 78 GtL~l~ei~~L--~~~~Q~~L~~~l~~~~~~~RiI-~~s~~~l 117 (145)
..+++||+|.| .......+..++..-..+.+++ +|.+.+.
T Consensus 237 ~~lVlDEaD~ll~~~gf~~~i~~I~~~l~~~~Q~llfSATl~~ 279 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred EEEEEHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEECCH
T ss_conf 8986246888877189599999999848988869999510898
No 225
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.87 E-value=0.089 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+.|.|+.|+||+++.+.|-.
T Consensus 28 Ge~vaivG~sGsGKSTLl~ll~g 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 99999999999819999999966
No 226
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.85 E-value=0.16 Score=27.39 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99999999998614799589875899888899999986
Q T0567 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 9 ~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.+.+...+++.--....-|++.|.+|+||+++...|-.
T Consensus 21 ~l~~~~~~l~~~~~~~l~I~l~G~tg~GKSSliN~llg 58 (262)
T 3def_A 21 KLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 99999999875578873899989999879999999958
No 227
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.84 E-value=0.11 Score=28.35 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
|-|+|..||||+++|+++-.
T Consensus 7 IgitG~igSGKStva~~l~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99879886879999999998
No 228
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5}
Probab=91.78 E-value=0.11 Score=28.14 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898758998888999999862
Q T0567 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~ 47 (145)
+.|.|..|+||+++++.|+..
T Consensus 3 I~ieG~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999999999999999
No 229
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli}
Probab=91.75 E-value=0.41 Score=25.20 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=19.1
Q ss_pred CEEEECCCCCCHH-HHHHHHHHHCCC
Q ss_conf 5898758998888-999999862124
Q T0567 26 AVWLYGAPGTGRM-TGARYLHQFGRN 50 (145)
Q Consensus 26 pvli~Ge~GtGK~-~~A~~iH~~s~~ 50 (145)
-+++.|..|+||+ ++|++-|....+
T Consensus 101 vIm~VGlnGsGKTTTiaKLA~~lk~k 126 (430)
T 2j28_9 101 VVLMAGLQGAGKTTSVGKLGKFLREK 126 (430)
T ss_dssp EEEEECSSSSSSTTTHHHHHHHHHTS
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99999324898615099999999984
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.63 E-value=0.095 Score=28.59 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=18.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.-|+|.|++||||+.+|-.|..
T Consensus 41 klI~I~GpTasGKT~lAi~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 6799989885389999999999
No 231
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.58 E-value=0.087 Score=28.80 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=19.1
Q ss_pred CCC--EEEECCCCCCHHHHHHHHHH
Q ss_conf 995--89875899888899999986
Q T0567 24 DIA--VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~p--vli~Ge~GtGK~~~A~~iH~ 46 (145)
..| ++|.|++||||+.+|-.+..
T Consensus 5 ~k~~ii~I~GpTasGKT~LA~~LA~ 29 (340)
T 3d3q_A 5 TKPFLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8896699989771359999999999
No 232
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.57 E-value=0.1 Score=28.44 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=18.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
....-++|.|+||+||+++|--+
T Consensus 22 ~~G~~~~i~G~pGsGKT~~~lq~ 44 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHH
T ss_conf 59989999938999889999999
No 233
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str}
Probab=91.53 E-value=0.12 Score=27.95 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 89875899888899999986212
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGR 49 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~ 49 (145)
+.|.|..|+||++.|+.|...-.
T Consensus 7 I~ieG~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988739999999999997
No 234
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 subcomplex of F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.48 E-value=0.64 Score=24.12 Aligned_cols=114 Identities=10% Similarity=-0.012 Sum_probs=63.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHH-----CCCEEEECCHHHCCHHHHHH---
Q ss_conf 9958987589988889999998621242678524125788988889999862-----58748743742068778999---
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALA-----QGGTLVLSHPEHLTREQQYH--- 95 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a-----~gGtL~l~ei~~L~~~~Q~~--- 95 (145)
..-+.|.|..|+||+.++.-+-......++-.+.+-+..+...+..++++.- -.-|.++-.-..-|+..|..
T Consensus 151 GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~~i~V~~~iGer~re~~~~~~~~~~~~~l~~tv~v~~~s~~~~~~r~~a~~ 230 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 87666455899888999999998678744987999995636199999999987503555218999779997467778999
Q ss_pred ----HHHHHH-HCCHHHEEEECCCCCHHHHH-----------HCCCCCHHHHHHHCCC
Q ss_conf ----999987-21401001114776878998-----------7089765655755442
Q T0567 96 ----LVQLQS-QEHRPFRLIGIGDTSLVELA-----------ASNHIIAELYYCFAMT 137 (145)
Q Consensus 96 ----L~~~l~-~~~~~~RiI~~s~~~l~~l~-----------~~~~~~~~L~~~ls~~ 137 (145)
+++++. .+..++-++..+-....+.. ....+.+++|+.++.+
T Consensus 231 ~a~tiAEyfrd~~G~~VLl~~D~ltr~A~A~REisl~lge~P~~~gYp~~~~~~l~~l 288 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQL 288 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999998727995488970504899999899997279987567882599887888
No 235
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=91.44 E-value=0.65 Score=24.09 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=35.2
Q ss_pred EEEECCCCCCHH-HHHHHHHHHCCCCCCCCCEECCCCCCHHHHHH---------------------------HHHHH---
Q ss_conf 898758998888-99999986212426785241257889888899---------------------------99862---
Q T0567 27 VWLYGAPGTGRM-TGARYLHQFGRNAQGEFVYRELTPDNAPQLND---------------------------FIALA--- 75 (145)
Q Consensus 27 vli~Ge~GtGK~-~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~---------------------------~l~~a--- 75 (145)
+++.|++|+||+ ++|+.-+..... ......+.|-.......++ ..+.|
T Consensus 102 i~~vG~~G~GKTTt~aKlA~~~~~~-~~~v~li~~Dt~R~~A~eQL~~~a~~~~v~~~~~~~~~d~~~i~~~~~~~a~~~ 180 (309)
T 2qy9_A 102 ILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKAR 180 (309)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9996467777664178899999846-776148651414620899999875417986761468988999999999999976
Q ss_pred CCCEEEECCHHHCCHHHH
Q ss_conf 587487437420687789
Q T0567 76 QGGTLVLSHPEHLTREQQ 93 (145)
Q Consensus 76 ~gGtL~l~ei~~L~~~~Q 93 (145)
.--.+++|-..+++.+..
T Consensus 181 ~~D~vlIDTAGR~~~~~~ 198 (309)
T 2qy9_A 181 NIDVLIADTAGRLQNKSH 198 (309)
T ss_dssp TCSEEEECCCCCGGGHHH
T ss_pred CCCEEEECCCCCCCCCHH
T ss_conf 998999747777767799
No 236
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 1um2_C
Probab=91.31 E-value=0.48 Score=24.81 Aligned_cols=111 Identities=11% Similarity=0.107 Sum_probs=62.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHH------------CCCEEEECCHHHCCHH
Q ss_conf 9958987589988889999998621242678524125788988889999862------------5874874374206877
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALA------------QGGTLVLSHPEHLTRE 91 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a------------~gGtL~l~ei~~L~~~ 91 (145)
..-+.|.|.+|+||+.+...|-..+. .-.+..-+..+...+..++++.. -.-|.++-+-...|..
T Consensus 221 Gqr~~I~g~~g~GKt~l~~~ia~~~~---~~v~V~~~iGer~~ev~~~~~e~~e~~~~~~g~~~~~rtvvv~~ts~~p~~ 297 (578)
T 3gqb_A 221 GGTAAIPGPFGSGKSVTQQSLAKWSN---ADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVA 297 (578)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHHSS---CSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC---CCCEEECCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHH
T ss_conf 87158844877535799999875236---897045165334899999998776504433466421114787146789989
Q ss_pred HHHH-------HHHHHHHCCHHHEEEECCCCCHHHHH-----------HCCCCCHHHHHHHCCC
Q ss_conf 8999-------99998721401001114776878998-----------7089765655755442
Q T0567 92 QQYH-------LVQLQSQEHRPFRLIGIGDTSLVELA-----------ASNHIIAELYYCFAMT 137 (145)
Q Consensus 92 ~Q~~-------L~~~l~~~~~~~RiI~~s~~~l~~l~-----------~~~~~~~~L~~~ls~~ 137 (145)
.|.. +++++..+..++-++..+.....+.. .+..+..++|+.++.+
T Consensus 298 ~r~~~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REis~~~~e~P~~~gyp~~l~s~la~l 361 (578)
T 3gqb_A 298 AREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAF 361 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHEEECHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9888888887778899864982478762242120442111001489873447784166679999
No 237
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.29 E-value=0.11 Score=28.19 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=16.6
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-+-|.|+.|+||++++++|-
T Consensus 48 E~vgLvG~NGsGKSTLlk~la 68 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 999999999955999999997
No 238
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3}
Probab=91.23 E-value=0.13 Score=27.81 Aligned_cols=47 Identities=2% Similarity=-0.128 Sum_probs=30.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHH
Q ss_conf 479958987589988889999998621242678524125788988889
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLN 69 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~ 69 (145)
....-++|.|+||+||+++|-.+-..+-+...+.+.++.. ++..++.
T Consensus 19 ~~gs~~li~g~pgsgkt~l~~~f~~~~~~~Ge~~lyvs~e-e~~~~l~ 65 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLII 65 (260)
T ss_dssp TTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHH
T ss_conf 8985999992899988999999999998769928999567-8999999
No 239
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A
Probab=91.21 E-value=0.11 Score=28.34 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=19.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+.|.|+.|+||+++.+.|..
T Consensus 30 Ge~~~i~G~sGsGKSTLl~~i~g 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999739999999965
No 240
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.18 E-value=0.13 Score=27.94 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 8987589988889999998621
Q T0567 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s 48 (145)
|-|+|..||||+++|+++...+
T Consensus 78 IGLTGgigSGKStva~~L~~~G 99 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKNLG 99 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9987988654999999999879
No 241
>2ck3_D ATP synthase beta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_E* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2w6j_D 2w6e_D 2w6g_D ...
Probab=91.18 E-value=0.69 Score=23.95 Aligned_cols=114 Identities=10% Similarity=0.010 Sum_probs=64.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHH-----------CCCEEEECCHHHCCHHH
Q ss_conf 9958987589988889999998621242678524125788988889999862-----------58748743742068778
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALA-----------QGGTLVLSHPEHLTREQ 92 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a-----------~gGtL~l~ei~~L~~~~ 92 (145)
..-+.|.|..|+||+.++.-+-.....++.-.+.+-...+...+..+++++- -.-|.++-+-...|...
T Consensus 153 Gqr~~ifg~~g~GKt~l~~~~~~n~~~~~~~v~V~~~iGer~rev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~~~~~ 232 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHH
T ss_conf 77767556899888999999998566526998999996406098999999988628643467542489999678899899
Q ss_pred HHH-------HHHHHHHC-CHHHEEEECCCCCHHHH-----------HHCCCCCHHHHHHHCCC
Q ss_conf 999-------99998721-40100111477687899-----------87089765655755442
Q T0567 93 QYH-------LVQLQSQE-HRPFRLIGIGDTSLVEL-----------AASNHIIAELYYCFAMT 137 (145)
Q Consensus 93 Q~~-------L~~~l~~~-~~~~RiI~~s~~~l~~l-----------~~~~~~~~~L~~~ls~~ 137 (145)
+.. +++++..+ ..++-++..+-....+. ..+..+.+++|+.++.+
T Consensus 233 r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsltr~A~A~REisl~~~e~P~~~gYp~~~f~~l~~l 296 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 296 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999999998557983899973606899998788997389998778694399987888
No 242
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.18 E-value=0.22 Score=26.59 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=38.1
Q ss_pred CC-EEEECCCCCCHHHHHHHHHHHCCCC--CCCCCEECCCC-CCHHHHHHHH---HHHCCCEEEECCHHHCCHHHHHHHH
Q ss_conf 95-8987589988889999998621242--67852412578-8988889999---8625874874374206877899999
Q T0567 25 IA-VWLYGAPGTGRMTGARYLHQFGRNA--QGEFVYRELTP-DNAPQLNDFI---ALAQGGTLVLSHPEHLTREQQYHLV 97 (145)
Q Consensus 25 ~p-vli~Ge~GtGK~~~A~~iH~~s~~~--~~~fv~~~~~~-~~~~~~~~~l---~~a~gGtL~l~ei~~L~~~~Q~~L~ 97 (145)
.| |-|.|..|+||+++|+.+-..-.+. ...++..|+.. .+..+..... ....++.+-.++.+...-+.-...+
T Consensus 5 ~pIIgItG~SGSGKTTva~~L~~~l~~~~i~~~vI~~D~fyr~~R~~~~~~~~~~~~~~~~~~~~~~PdA~d~~~L~~~l 84 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF 84 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 97999989997809999999999861469977999688787765033323233324542367898992212499999999
Q ss_pred HHH
Q ss_conf 998
Q T0567 98 QLQ 100 (145)
Q Consensus 98 ~~l 100 (145)
..+
T Consensus 85 ~~l 87 (290)
T 1a7j_A 85 REY 87 (290)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 243
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=91.18 E-value=0.69 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=18.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.-|++.|+.|+||+++.+.+-.
T Consensus 42 ~Kl~lvG~~~vGKTsL~~~L~~ 63 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 4699999289889999999967
No 244
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold, motor, ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.11 E-value=0.7 Score=23.91 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=40.0
Q ss_pred HHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHCCCC-CCCCCEECCCCCCHHHHHHHHHHHCCCEEEECCHHHCCHH
Q ss_conf 999986147--9958987589988889999998621242-6785241257889888899998625874874374206877
Q T0567 15 RRLQQLSET--DIAVWLYGAPGTGRMTGARYLHQFGRNA-QGEFVYRELTPDNAPQLNDFIALAQGGTLVLSHPEHLTRE 91 (145)
Q Consensus 15 ~~i~~~a~~--~~pvli~Ge~GtGK~~~A~~iH~~s~~~-~~~fv~~~~~~~~~~~~~~~l~~a~gGtL~l~ei~~L~~~ 91 (145)
+-|..+.+. ..-.+|.|++||||++++.-|-...... ....+.+-+..+...+..++.... .+.++..-.+. |+.
T Consensus 163 RvID~~~PigkGQR~lI~g~~g~GKT~Ll~~ia~~~~~~~~~~~~iv~li~er~eev~~~~~~~-~~~vv~st~d~-~~~ 240 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-KGEVVASTFDE-PAS 240 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC-SSEEEEECTTS-CHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHHHHHHHHC-CCEEEEECCCC-CHH
T ss_conf 8999999985798068854898748899999997554069977999998635555565454211-43799965887-355
Q ss_pred HH
Q ss_conf 89
Q T0567 92 QQ 93 (145)
Q Consensus 92 ~Q 93 (145)
.+
T Consensus 241 ~~ 242 (422)
T 3ice_A 241 RH 242 (422)
T ss_dssp HH
T ss_pred HH
T ss_conf 54
No 245
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.11 E-value=0.17 Score=27.21 Aligned_cols=37 Identities=11% Similarity=-0.062 Sum_probs=23.6
Q ss_pred CCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 9958-987589988889999998621242678524125
Q T0567 24 DIAV-WLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL 60 (145)
Q Consensus 24 ~~pv-li~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~ 60 (145)
.++| .|+|.+||||++++..|...-.........+.+
T Consensus 3 ~mkii~I~G~~gSGKTTLi~~Li~~L~~~g~~v~~ik~ 40 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 76599998299998999999999999866995157525
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.01 E-value=0.12 Score=28.01 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=18.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9958987589988889999998
Q T0567 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH 45 (145)
..-+.|+||+||||+.+|-.+-
T Consensus 122 G~itei~G~~GsGKT~lal~la 143 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLC 143 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 8599998376834999999999
No 247
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Probab=90.85 E-value=0.15 Score=27.56 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898758998888999999862
Q T0567 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~ 47 (145)
+.|.|..|+||++.++.+...
T Consensus 5 I~ieG~dGsGKsT~~~~L~~~ 25 (205)
T 2ccj_A 5 ITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899888599999999999
No 248
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.82 E-value=0.49 Score=24.76 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHCCC--CCEEEEC-CCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 89999999999861479--9589875-89988889999998621242678524125788
Q T0567 8 EWINQYRRRLQQLSETD--IAVWLYG-APGTGRMTGARYLHQFGRNAQGEFVYRELTPD 63 (145)
Q Consensus 8 ~~m~~l~~~i~~~a~~~--~pvli~G-e~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~ 63 (145)
++++.++..+....... .-|+++| .+|.||+++|-.+-..-.+.......+||...
T Consensus 64 ea~r~l~~~l~~~~~~~~~~vI~vtS~~~G~GKTtva~~LA~~la~~G~rVllID~D~~ 122 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999999987645799985999978998998899999999999967994899855899
No 249
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.70 E-value=0.25 Score=26.37 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCCEEEECCHH-HCCHHHHHHHHHHHHHCCHHHEEEECCCCC
Q ss_conf 58748743742-068778999999987214010011147768
Q T0567 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
Q Consensus 76 ~gGtL~l~ei~-~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~ 116 (145)
.+++++|||++ .|.+..|.+|++++.....+..+|.+|+.+
T Consensus 241 ~~~illiDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp 282 (322)
T 1e69_A 241 PSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK 282 (322)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred CCHHHHHHCHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 313554514031399999999999999976999899993899
No 250
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.60 E-value=0.59 Score=24.32 Aligned_cols=86 Identities=19% Similarity=0.138 Sum_probs=45.3
Q ss_pred CCCEEEECCCCCCHHHHHH--HHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHCCHHHHH--
Q ss_conf 9958987589988889999--9986212426785241257889888899998625-----874874374206877899--
Q T0567 24 DIAVWLYGAPGTGRMTGAR--YLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQ-----GGTLVLSHPEHLTREQQY-- 94 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~--~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a~-----gGtL~l~ei~~L~~~~Q~-- 94 (145)
..-++|.|.+||||+.++. .+++ ..+.-.+..-+..+...+..++++.-. .-|.++-.-..-|...|.
T Consensus 163 GQr~~I~g~~g~GKt~l~~~~i~~~---~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~l~~tvvv~at~~~p~~~r~~a 239 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ---QGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC---CTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH---CCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHH
T ss_conf 7455513589996778999988765---2788589999721138999999996402786323310024666778888888
Q ss_pred -----HHHHHHHHCCHHHEEEEC
Q ss_conf -----999998721401001114
Q T0567 95 -----HLVQLQSQEHRPFRLIGI 112 (145)
Q Consensus 95 -----~L~~~l~~~~~~~RiI~~ 112 (145)
.+++++..+..++-++.-
T Consensus 240 ~~~a~aiAEyfrd~G~~VLl~~D 262 (507)
T 1fx0_A 240 PYTGAALAEYFMYRERHTLIIYD 262 (507)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 88898999999964677269961
No 251
>2get_A Pantothenate kinase; homodimer, COA biosynthesis, nucleotide binding, transferase; HET: CME COK; 2.35A {Mycobacterium tuberculosis H37RV} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
Probab=90.56 E-value=0.73 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.9
Q ss_pred CCC--EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 995--8987589988889999998621
Q T0567 24 DIA--VWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 24 ~~p--vli~Ge~GtGK~~~A~~iH~~s 48 (145)
+.| |-|.|.+|+||+++|+.|...-
T Consensus 88 ~~PfIIGIaG~sgSGKSTla~~L~~~L 114 (312)
T 2get_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998899988999776999999999997
No 252
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.54 E-value=0.14 Score=27.72 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
++|.|++||||+.+|-.|..
T Consensus 4 ~~i~GpTasGKt~lai~lA~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99979886588999999999
No 253
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.53 E-value=0.24 Score=26.43 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=28.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 995898758998888999999862124267852412578
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~ 62 (145)
..-+++.|--|+||+++|-.+-..-.+.......+||-+
T Consensus 16 ~r~if~sGKGGVGKTTvAa~lA~~LA~~G~rVLlvD~Dp 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 669999699978199999999999996899589995899
No 254
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=90.49 E-value=0.14 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.||.|+||+++++.|-.
T Consensus 31 Gei~givG~SGsGKSTLlr~i~g 53 (343)
T 3dhw_C 31 GQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_dssp SCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999559999999975
No 255
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=90.46 E-value=0.22 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 589875899888899999986212
Q T0567 26 AVWLYGAPGTGRMTGARYLHQFGR 49 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~s~ 49 (145)
-|.|.|..|+||+++++.|.....
T Consensus 9 rI~IEG~iGsGKTTl~~~L~~~l~ 32 (334)
T 1p6x_A 9 RIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988877889999999999866
No 256
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.45 E-value=0.15 Score=27.49 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-+-|.|+.|+||+++++.|--
T Consensus 32 ~Ge~~~iiG~nGaGKSTLl~~i~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 997999986899999999999966
No 257
>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.40 E-value=0.21 Score=26.69 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..=|.|.|..|+||++.++.+...
T Consensus 9 G~~I~ieG~dGsGKST~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 549999899888899999999999
No 258
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.31 E-value=0.13 Score=27.91 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
++|.|++||||+.+|-.+..
T Consensus 8 i~I~GpTasGKs~la~~lA~ 27 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989772079999999999
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.30 E-value=0.21 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9958987589988889999998621
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s 48 (145)
...+.|.|++|+||+++++.+-...
T Consensus 6 G~iivl~GpsGsGK~tl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 7189999999999999999998559
No 260
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.24 E-value=0.16 Score=27.37 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..-+.|.|+.|+||+++.+.|--.
T Consensus 30 Ge~v~liGpNGaGKSTLlk~i~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999889997499999999648
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.14 E-value=0.16 Score=27.30 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.-+.|.||.|+||+++.+.|-..
T Consensus 25 e~~~ilGpnGaGKSTll~~i~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89999989998299999999739
No 262
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=90.14 E-value=0.33 Score=25.66 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=26.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 95898758998888999999862124267852412578
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~ 62 (145)
.-+++.|.-|+||+++|-.+...-.+.......+||.+
T Consensus 20 rii~~sGKGGVGKTTvAa~LA~~LA~~G~rVLlvd~Dp 57 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 69999799978499999999999996899389996899
No 263
>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.07 E-value=0.17 Score=27.25 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-+.|.|+.|+||+++.+.|-.
T Consensus 33 ~Ge~vaivG~sGsGKSTLl~ll~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999999999989999999998
No 264
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.05 E-value=0.17 Score=27.21 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=21.9
Q ss_pred CCEEEECCHH-HCCHHHHHHHHHHHHHCC
Q ss_conf 8748743742-068778999999987214
Q T0567 77 GGTLVLSHPE-HLTREQQYHLVQLQSQEH 104 (145)
Q Consensus 77 gGtL~l~ei~-~L~~~~Q~~L~~~l~~~~ 104 (145)
--.|+|||.- .|+...+.+|.+++.+..
T Consensus 567 pdiLLLDEPTn~LD~~~~~~L~~~L~~~~ 595 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNTCG 595 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999808876579999999999987517
No 265
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.05 E-value=0.43 Score=25.06 Aligned_cols=35 Identities=11% Similarity=-0.000 Sum_probs=22.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 95898758998888999999862124267852412
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~ 59 (145)
.-++|.|.||+||+.+|..+-........+...++
T Consensus 198 ~l~vi~g~pg~GKT~~~~~ia~~~a~~~~~v~~~s 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 46899947999846999999999995699489981
No 266
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.04 E-value=0.19 Score=27.00 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9958987589988889999998
Q T0567 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH 45 (145)
+.-.+|+||+|+||+++-.+|-
T Consensus 29 ~gltvItG~nGaGKS~ildAl~ 50 (483)
T 3euj_A 29 ELVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9807998999987999999999
No 267
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.03 E-value=0.18 Score=27.08 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=20.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99589875899888899999986212
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~ 49 (145)
..-+.|.|++|+||+++++.+-..-+
T Consensus 16 G~iivl~GPSGsGK~tL~~~L~~~~p 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 83899999999999999999985298
No 268
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.88 E-value=0.19 Score=26.98 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 58987589988889999998621
Q T0567 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~s 48 (145)
=+.|.|..|+||+++++.|+..-
T Consensus 12 ~I~ieG~dGsGKsT~~~~L~e~L 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998998889999999999999
No 269
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.83 E-value=0.92 Score=23.28 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=51.3
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHH--HHHHHCCCCCCCCCEECCC----------------------------CCC----
Q ss_conf 861479958987589988889999--9986212426785241257----------------------------889----
Q T0567 19 QLSETDIAVWLYGAPGTGRMTGAR--YLHQFGRNAQGEFVYRELT----------------------------PDN---- 64 (145)
Q Consensus 19 ~~a~~~~pvli~Ge~GtGK~~~A~--~iH~~s~~~~~~fv~~~~~----------------------------~~~---- 64 (145)
.....+..|++..++||||+...- .+........++...+=+. ..+
T Consensus 75 p~il~G~dvlv~a~TGSGKTlayllpil~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (249)
T 3ber_A 75 PLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQ 154 (249)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHH
T ss_pred HHHHCCCCEEEECCCCCCCEEEEEHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf 99977999899866999855488707655201346663156756648988889998775303678528999578885999
Q ss_pred --------------HHHHHHHHHHHC------CCEEEECCHHHCCH-HHHHHHHHHHHHCCHHHEE-EECCCCC
Q ss_conf --------------888899998625------87487437420687-7899999998721401001-1147768
Q T0567 65 --------------APQLNDFIALAQ------GGTLVLSHPEHLTR-EQQYHLVQLQSQEHRPFRL-IGIGDTS 116 (145)
Q Consensus 65 --------------~~~~~~~l~~a~------gGtL~l~ei~~L~~-~~Q~~L~~~l~~~~~~~Ri-I~~s~~~ 116 (145)
+..+...+.... =.++++||.|.|-. ..+..+..+++.-..+.++ ++|.+.+
T Consensus 155 ~~~~~~~~~ilV~TP~rl~~~l~~~~~~~l~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~il~SATl~ 228 (249)
T 3ber_A 155 SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred HHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 99972799399968799999998277775366159985467667537859999999986887682899995389
No 270
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.73 E-value=0.17 Score=27.18 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..-++|.|+||+||+.+|-.+-..
T Consensus 107 G~v~~I~G~pG~GKT~lalq~a~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 848999778988879999999999
No 271
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.73 E-value=0.38 Score=25.36 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.9
Q ss_pred CC-EEEECCCCCCHHHHHHHHHHH
Q ss_conf 95-898758998888999999862
Q T0567 25 IA-VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~p-vli~Ge~GtGK~~~A~~iH~~ 47 (145)
.| |+|.|.+|+||+++.+.|...
T Consensus 14 ~~vv~l~G~~GsGKTTLl~~Ll~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 988999938998399999999998
No 272
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Probab=89.72 E-value=0.19 Score=26.98 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+.|.|+.|+||+++.+.|.-
T Consensus 33 Ge~~~iiG~nGaGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999999999839999999964
No 273
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=89.65 E-value=0.43 Score=25.05 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=21.1
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHH--HHHHHH
Q ss_conf 9998614799589875899888899--999986
Q T0567 16 RLQQLSETDIAVWLYGAPGTGRMTG--ARYLHQ 46 (145)
Q Consensus 16 ~i~~~a~~~~pvli~Ge~GtGK~~~--A~~iH~ 46 (145)
|-+.+...+.|+++.+-+|||||.+ .|+.|.
T Consensus 16 Q~~av~~~~g~~lV~AgAGSGKT~~L~~ri~~L 48 (724)
T 1pjr_A 16 QQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYL 48 (724)
T ss_dssp HHHHHHCCSSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 999973999898999838427999999999999
No 274
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens}
Probab=89.64 E-value=0.14 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=23.8
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9999861479958987589988889999998
Q T0567 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 15 ~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
+.+..-+.+..-|++.|.+|+||+++..+|-
T Consensus 12 ~~~~~~~~~~~~I~l~G~tg~GKSsl~N~l~ 42 (247)
T 3lxw_A 12 ENLYFQGESTRRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp --------CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 8853048997589999999996999999996
No 275
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Probab=89.60 E-value=0.3 Score=25.90 Aligned_cols=26 Identities=8% Similarity=0.279 Sum_probs=19.5
Q ss_pred HHHHHHHCCCCCEEEECCCCCCHHHH
Q ss_conf 99998614799589875899888899
Q T0567 15 RRLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
Q Consensus 15 ~~i~~~a~~~~pvli~Ge~GtGK~~~ 40 (145)
+|-+.+...+.|+++.+-+|||||++
T Consensus 13 eQ~~av~~~~~~~lV~AgAGSGKT~t 38 (680)
T 2is6_A 13 KQREAVAAPRSNLLVLAGAGSGKTRV 38 (680)
T ss_dssp HHHHHHTCCSSCEEEECCTTSSHHHH
T ss_pred HHHHHHCCCCCCEEEEEECCHHHHHH
T ss_conf 99999739999989998585589999
No 276
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=89.58 E-value=0.47 Score=24.83 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=19.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..|+|.||.|+||+..++.|
T Consensus 92 ~~~QsIiisGeSGsGKTe~~k~i 114 (697)
T 1lkx_A 92 QENQCVIISGESGAGKTEASKKI 114 (697)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 89808999678988889999999
No 277
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.53 E-value=0.17 Score=27.26 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=18.1
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-|+|.|++||||+.+|-.+..
T Consensus 5 iI~I~GpTasGKT~la~~LA~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 799989872169999999999
No 278
>1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.12
Probab=89.42 E-value=0.2 Score=26.82 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=19.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-+.|.|+.|+||+++.+.|-.
T Consensus 34 ~Gei~~l~G~NGsGKTTLlk~i~g 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 997999999999729999999966
No 279
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.40 E-value=0.21 Score=26.77 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.0
Q ss_pred CCC--EEEECCCCCCHHHHHHHHH
Q ss_conf 995--8987589988889999998
Q T0567 24 DIA--VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~p--vli~Ge~GtGK~~~A~~iH 45 (145)
..| |=|+|..||||+++|+++-
T Consensus 10 ~~~mIIgiTG~igsGKStv~~~l~ 33 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 577799986788688999999998
No 280
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=89.33 E-value=0.76 Score=23.73 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=21.1
Q ss_pred HCCCCCEEEECCCCCCHHHHHH--HHHHHCCCCCC
Q ss_conf 1479958987589988889999--99862124267
Q T0567 21 SETDIAVWLYGAPGTGRMTGAR--YLHQFGRNAQG 53 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~--~iH~~s~~~~~ 53 (145)
......|++..++||||+.+.- +++.......+
T Consensus 55 ll~gkdvlv~apTGsGKTlaf~lP~l~~~~~~~~~ 89 (400)
T 1s2m_A 55 AITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK 89 (400)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCS
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 97699889988998588999999999742114677
No 281
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.22 E-value=0.35 Score=25.53 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.0
Q ss_pred HHHHHHHH-HCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99999986-14799589875899888899999986
Q T0567 13 YRRRLQQL-SETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 13 l~~~i~~~-a~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+...+.++ .....-|++.|.+|+||+++...+..
T Consensus 4 ~~~~~~~~~~~~e~KI~lvG~~n~GKTSLl~rl~~ 38 (187)
T 1zj6_A 4 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 89999987189837999999999888999999964
No 282
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.15 E-value=0.22 Score=26.64 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|.-
T Consensus 34 Ge~~~liG~nGaGKSTLl~~i~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999839999999965
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.14 E-value=0.22 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|--
T Consensus 50 GEi~~l~G~sGsGKSTLl~~i~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999987999999999888708
No 284
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.06 E-value=0.21 Score=26.76 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=20.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7995898758998888999999862
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
...-+-|.|+.|+||+++.+.|-..
T Consensus 46 ~Ge~vaivG~sGsGKSTLl~ll~Gl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999099999998578
No 285
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=89.04 E-value=0.22 Score=26.63 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
-+|+|+.|+||+++-.+|+.
T Consensus 29 ~~I~G~NGsGKS~ileAi~~ 48 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999989999999999
No 286
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.93 E-value=0.17 Score=27.28 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=18.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.=|||.|++|.||+.+|=.+-.
T Consensus 148 ~GVLI~G~SG~GKSelALeLI~ 169 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999982899987899999998
No 287
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.89 E-value=0.23 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-+-|.|+.|+||+++.+.|-.
T Consensus 30 ~Ge~~~liG~NGaGKSTLl~~i~G 53 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 998999993899979999999957
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.85 E-value=0.24 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 799589875899888899999986
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...-+.|.|+.|+||+++++.|--
T Consensus 45 ~Gei~~liG~nGaGKSTLlk~i~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 998999999999859999999837
No 289
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.83 E-value=0.24 Score=26.37 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=18.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.-+.|.|..|+||++.++.+...
T Consensus 4 k~I~ieG~dGsGKsT~~~~L~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 08998899988899999999999
No 290
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.71 E-value=0.24 Score=26.38 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=19.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|.-
T Consensus 37 Ge~~~llGpsG~GKsTllr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999859999999974
No 291
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.65 E-value=0.23 Score=26.51 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=19.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|-.
T Consensus 64 Ge~v~ivG~sGsGKSTLl~~i~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999999998709999999955
No 292
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.61 E-value=0.57 Score=24.40 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=23.6
Q ss_pred HHHHHHHHHH-HCCCCC-EEEECCCCCCHHHHHHHHHH
Q ss_conf 9999999986-147995-89875899888899999986
Q T0567 11 NQYRRRLQQL-SETDIA-VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 11 ~~l~~~i~~~-a~~~~p-vli~Ge~GtGK~~~A~~iH~ 46 (145)
+++++..++. ...+.| |-|.|.+|+||+++...|-.
T Consensus 23 ~~~~~~~r~~~~~~~~~~v~ivG~~gaGKTTLln~L~~ 60 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99999998888774984999988999989999999998
No 293
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 2vb6_A* 2vas_A*
Probab=88.59 E-value=0.61 Score=24.24 Aligned_cols=23 Identities=13% Similarity=0.497 Sum_probs=19.7
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..|+|.||.|+||+..++.|
T Consensus 138 ~~~QsIiisGESGaGKTe~~K~i 160 (784)
T 2v26_A 138 KLSQSIIVSGESGAGKTENTKFV 160 (784)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 79966999667899817999999
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C*
Probab=88.50 E-value=0.26 Score=26.26 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..-+.|.|+.|+||+++.+.|.-.
T Consensus 26 Gei~~ilGpNGaGKSTLl~~i~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999999998099999999478
No 295
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.47 E-value=0.16 Score=27.32 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=17.8
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
=|+|.|++||||+.+|--|..
T Consensus 4 vi~i~G~TgsGKS~Lai~LA~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH
T ss_conf 799989770459999999999
No 296
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.33 E-value=0.25 Score=26.33 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=19.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..-+-|.|+.|+||+++.+.|--.
T Consensus 30 Ge~~~llGpsGsGKSTLlr~i~Gl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999997499999999739
No 297
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.32 E-value=0.15 Score=27.52 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.-+.|.|++|+||+++++.+-.
T Consensus 28 ~livl~GPSG~GK~tl~~~L~~ 49 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLE 49 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 4999989899899999999996
No 298
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=88.23 E-value=0.29 Score=25.98 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=36.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC--------CCCCC-HHHHHHHHHHHCCCEEEECCHHHCCHHHHHHHH
Q ss_conf 898758998888999999862124267852412--------57889-888899998625874874374206877899999
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE--------LTPDN-APQLNDFIALAQGGTLVLSHPEHLTREQQYHLV 97 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~--------~~~~~-~~~~~~~l~~a~gGtL~l~ei~~L~~~~Q~~L~ 97 (145)
|.|.|..|+||+++++.+....... .++.+. ....+ ...+.+-....+.|-++..+-..+.-..|..++
T Consensus 52 I~IEG~iGsGKTTlak~La~~l~~~--~i~~v~EPm~yWr~~~g~~~L~~iY~~~~r~~~~~~~~~~~~~~~~~~Q~~fa 129 (376)
T 1of1_A 52 VYIDGPHGMGKTTTTQLLVALGSRD--DIVYVPEPMTYWRVLGASETIANIYTTQHRLDQGEISAGDAAVVMTSAQITMG 129 (376)
T ss_dssp EEECSSTTSSHHHHHHHHHC----C--CEEEECCCHHHHHTTSSSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9998986578999999999872648--74872475100006799743999986276412111352025778999999999
No 299
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=88.18 E-value=0.47 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.7
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|-|+|.||.||+++-..+-
T Consensus 58 ~IgItG~PGaGKSTLi~~L~ 77 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89843899998999999999
No 300
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=88.16 E-value=0.49 Score=24.77 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 8999999999986147995898758998888999999
Q T0567 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 8 ~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..|.++.+.+ ..+.++++..++||||+..+-+.
T Consensus 14 ~~~~~i~~~l----~~~~~~~ieApTG~GKTla~L~~ 46 (540)
T 2vl7_A 14 EKLGEAINAL----KHGKTLLLNAKPGLGKTVFVEVL 46 (540)
T ss_dssp HHHHHHHHHH----HTTCEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHH----HCCCEEEEECCCCHHHHHHHHHH
T ss_conf 9999999999----54990999848806899999999
No 301
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.13 E-value=0.26 Score=26.21 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=19.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..-|+|.|++|+||+++|-.+-..
T Consensus 34 g~gvli~G~sG~GKS~lal~li~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 999999818999989999999974
No 302
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Probab=88.07 E-value=0.28 Score=26.02 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+.|.|+.|+||+++-+.|.-
T Consensus 29 Ge~~~llGpsG~GKSTllr~iaG 51 (381)
T 2awn_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999839999999975
No 303
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.03 E-value=0.31 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHC
Q ss_conf 8987589988889999998621
Q T0567 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s 48 (145)
+.|.|..|+||+++++.|+..-
T Consensus 5 I~iEG~~GsGKST~~~~L~~~l 26 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999885999999999998
No 304
>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A*
Probab=88.00 E-value=0.15 Score=27.55 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 799589875899888899999986212
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~s~ 49 (145)
.+.-+.|.|+.|+||+++++.|...-+
T Consensus 366 ~G~~i~IvG~sGsGKSTll~ll~gl~~ 392 (578)
T 2hyd_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 897899985898517689999836667
No 305
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=87.88 E-value=0.33 Score=25.67 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=18.0
Q ss_pred HHHHHHCCCCCEEEECCCCCCHHHH
Q ss_conf 9998614799589875899888899
Q T0567 16 RLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
Q Consensus 16 ~i~~~a~~~~pvli~Ge~GtGK~~~ 40 (145)
|-+.+-..+.|+++.+-+|||||++
T Consensus 7 Q~~av~~~~g~~lV~AgAGSGKT~t 31 (673)
T 1uaa_A 7 QQQAVEFVTGPCLVLAGAGSGKTRV 31 (673)
T ss_dssp HHHHHHCCSSEEEECCCTTSCHHHH
T ss_pred HHHHHCCCCCCEEEEEECCHHHHHH
T ss_conf 9999759998989998084479999
No 306
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=87.87 E-value=0.37 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 7995898758998888999999862
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
...=+.|.|..|+||+++++.|...
T Consensus 26 ~~kfIvieG~dGsGKST~~~~L~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7888999899888499999999999
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.84 E-value=0.58 Score=24.35 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=20.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 9589875899888899999986212
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~s~ 49 (145)
.=+.|.|..|+||+++++.+...-.
T Consensus 5 ~~I~ieG~dGsGKsT~~~~L~~~L~ 29 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4899989988879999999999983
No 308
>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A
Probab=87.83 E-value=1.2 Score=22.61 Aligned_cols=38 Identities=3% Similarity=-0.109 Sum_probs=23.1
Q ss_pred CCEEEECCHHHCCHHHHHHHHHHHHHC--CHHHEEEECCC
Q ss_conf 874874374206877899999998721--40100111477
Q T0567 77 GGTLVLSHPEHLTREQQYHLVQLQSQE--HRPFRLIGIGD 114 (145)
Q Consensus 77 gGtL~l~ei~~L~~~~Q~~L~~~l~~~--~~~~RiI~~s~ 114 (145)
-..++|||+|.++......+..+++.- ..+.+++..|.
T Consensus 96 l~~vVIDEaH~~d~~~~~~l~~il~~~~~~~~~~vll~SA 135 (437)
T 3kqn_A 96 YDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATA 135 (437)
T ss_dssp CSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred CCEEEEEEHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 6679986034438406788988765324687616999623
No 309
>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.81 E-value=0.32 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
.+|+|+.|+||+++-.+|+.
T Consensus 26 nvi~G~NgsGKStildAi~~ 45 (195)
T 1ii8_A 26 NLIIGQNGSGKSSLLDAILV 45 (195)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHH
T ss_conf 89988899983119887788
No 310
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.62 E-value=1.3 Score=22.43 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=17.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9958987589988889999998
Q T0567 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH 45 (145)
..-++|.|++|+||++++-.+-
T Consensus 30 g~~~~i~G~~G~GKS~l~l~la 51 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHH
T ss_conf 9789999199998999999999
No 311
>1br2_A Myosin; muscle protein; HET: ADP; 2.90A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1br1_A* 1br4_A*
Probab=87.61 E-value=0.77 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=19.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..++|.||.|+||+.-++.|
T Consensus 167 ~~~QsIiisGESGAGKTe~~K~i 189 (791)
T 1br2_A 167 REDQSILCTGESGAGKTENTKKV 189 (791)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 89947998258887542999999
No 312
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.57 E-value=1 Score=23.03 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=21.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHH-HCCCCCCCCCEEC
Q ss_conf 9589875899888899999986-2124267852412
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ-FGRNAQGEFVYRE 59 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~-~s~~~~~~fv~~~ 59 (145)
.-++|.|.+|+||+++|-.+-. .......+...++
T Consensus 36 ~l~vi~g~~G~GKT~~~~~ia~~~a~~~g~~vl~~s 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 289999789973999999999999986478679997
No 313
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.53 E-value=1.3 Score=22.40 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHH
Q ss_conf 4799589875899888899999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
...+.++++|++|||||.++-.
T Consensus 387 ~~~~~~Ll~a~TGSGKT~v~~l 408 (780)
T 1gm5_A 387 EKPMNRLLQGDVGSGKTVVAQL 408 (780)
T ss_dssp SSCCCCEEECCSSSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCEEEEHH
T ss_conf 8876299980689867052284
No 314
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A*
Probab=87.38 E-value=0.33 Score=25.64 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|.-
T Consensus 29 Gei~~liG~nGaGKSTl~~~i~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 98999988999889999999854
No 315
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.38 E-value=0.34 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.=|.|.|..|+||++.++.|+..
T Consensus 6 ~~I~iEG~dGsGKTT~~~~L~~~ 28 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 28999899888499999999999
No 316
>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus}
Probab=87.35 E-value=1.1 Score=22.94 Aligned_cols=41 Identities=10% Similarity=-0.084 Sum_probs=22.8
Q ss_pred CCEEEECCHHHCCHHHHHHHHHHH-HHCCHHHEEEECCCCCH
Q ss_conf 874874374206877899999998-72140100111477687
Q T0567 77 GGTLVLSHPEHLTREQQYHLVQLQ-SQEHRPFRLIGIGDTSL 117 (145)
Q Consensus 77 gGtL~l~ei~~L~~~~Q~~L~~~l-~~~~~~~RiI~~s~~~l 117 (145)
=.++++||+|.++...-..+..+. .....+.++|+.|...+
T Consensus 333 ys~IIIDEAH~~d~~t~~~~g~l~~~~~~~~~kvIlmSATpp 374 (673)
T 2wv9_A 333 YNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPP 374 (673)
T ss_dssp CSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred CCEEEEECCEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 639999185475856476679999862167760899406899
No 317
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.33 E-value=0.34 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|.-
T Consensus 29 ge~~~llGpsGsGKsTll~~i~g 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999998999729999999972
No 318
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.30 E-value=0.34 Score=25.63 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..-+.|.|+.|+||+++-+.|.-.
T Consensus 29 Ge~~~llGpSG~GKsTllr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999997399999999739
No 319
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.26 E-value=0.57 Score=24.42 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=43.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCCCEECC-------------------CC--CCHHHHHHHHHHHCCCEEE
Q ss_conf 9958987589988889999998621-242678524125-------------------78--8988889999862587487
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFG-RNAQGEFVYREL-------------------TP--DNAPQLNDFIALAQGGTLV 81 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s-~~~~~~fv~~~~-------------------~~--~~~~~~~~~l~~a~gGtL~ 81 (145)
..-|++.|.+|+||+++...+-... .....|-+..+. .. ........++..+.+-.++
T Consensus 5 ~iKi~viG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv 84 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 84 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCEEEEE
T ss_conf 89999999899298999999983978853232201002223200257511344211278632133301002478779999
Q ss_pred ECCHHHCCHHHHHHHHHHHHHCCHHHE-EEECCCCCH
Q ss_conf 437420687789999999872140100-111477687
Q T0567 82 LSHPEHLTREQQYHLVQLQSQEHRPFR-LIGIGDTSL 117 (145)
Q Consensus 82 l~ei~~L~~~~Q~~L~~~l~~~~~~~R-iI~~s~~~l 117 (145)
+|-.+.-+-+....+.+.+.....++- ++..+..|+
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilvgnK~Dl 121 (168)
T 1z2a_A 85 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDL 121 (168)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGG
T ss_pred EECCCCCHHHCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 9413320001123344411023788440122202454
No 320
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.09 E-value=0.39 Score=25.27 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=12.4
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-|.|+|+.|+||+++++.|-
T Consensus 1060 e~vaIvG~SGSGKSTL~~lL~ 1080 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHT
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 999998999980999999994
No 321
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Probab=87.07 E-value=0.36 Score=25.49 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|--
T Consensus 29 Gei~~l~GpsGsGKSTll~~i~G 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999839999999975
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.04 E-value=0.35 Score=25.51 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=19.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+.|.|+.|+||+++.+.|-.
T Consensus 47 Gei~~liGpNGaGKSTLl~~i~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999998999819999999965
No 323
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=87.03 E-value=0.87 Score=23.42 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=19.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..++|.||.|+||+.-++.|
T Consensus 154 ~~~QsIiisGeSGaGKTe~~k~i 176 (795)
T 1w7j_A 154 ERNQSIIVSGESGAGKTVSAKYA 176 (795)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHH
T ss_conf 89828999714899802899999
No 324
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=87.02 E-value=0.86 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.085 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 8999999999986147995898758998888999999
Q T0567 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 8 ~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
-+...+.+-++++.......+|+-++||||+.+|-.+
T Consensus 182 yQ~~Ai~~~~~~~~~~~~~~li~~~TGSGKTlt~~~~ 218 (590)
T 3h1t_A 182 YQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI 218 (590)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf 9999999999999837995699887998788999999
No 325
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.01 E-value=0.32 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.8
Q ss_pred CCCEEEECCCCCCHHHHHHHH
Q ss_conf 995898758998888999999
Q T0567 24 DIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~i 44 (145)
.-.|++.|++|+||+++-.+|
T Consensus 37 ~f~IlVvG~tg~GKSTliNsL 57 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSL 57 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 418999899969599999998
No 326
>2mys_A Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=86.93 E-value=0.8 Score=23.62 Aligned_cols=23 Identities=13% Similarity=0.420 Sum_probs=19.8
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..++|.||.|+||+.-++.|
T Consensus 170 ~~nQsIiisGESGAGKTestK~i 192 (843)
T 2mys_A 170 RENQSILITGESGAGKTVNTXRV 192 (843)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHH
T ss_conf 89927999968999877999999
No 327
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.87 E-value=0.38 Score=25.32 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
.+|+|+.|+||+++-.+|+.
T Consensus 26 ~vi~G~NG~GKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99998898880069999999
No 328
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=86.82 E-value=0.81 Score=23.59 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 989999999999861479958987589988889999998
Q T0567 7 SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 7 S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
+.....+....+++......|.+.|+.|+||+++-.+|-
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~i~v~G~~saGKStliNall 90 (695)
T 2j69_A 52 ERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999999875599779997899984999999997
No 329
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.67 E-value=1.5 Score=22.13 Aligned_cols=109 Identities=12% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHH-----HCCCEEEECCHHHCCHHHHHH---
Q ss_conf 995898758998888999999862124267852412578898888999986-----258748743742068778999---
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIAL-----AQGGTLVLSHPEHLTREQQYH--- 95 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~-----a~gGtL~l~ei~~L~~~~Q~~--- 95 (145)
..-++|.|.+|+||+++...|-.... .-.+.+-...+...+..++.+. ....+++... ..-|...+..
T Consensus 71 GQR~~I~g~~g~GKt~ll~~i~~~~~---~~~~v~~~iger~~ev~e~~~~~~~~~~~~~~vv~~~-~~~~~~~r~~~~~ 146 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT-SDRPALERMKAAF 146 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC-TTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCC---CCCEEEEEEEEECHHHHHHHHHHHHCCCCCEEEEEEC-CCCCHHHHHHHHH
T ss_conf 77330347999878999876422124---7821478987733217899987641143220577635-7788788888999
Q ss_pred ----HHHHHHHCCHHHEEEECCCCCHHHHH-----------HCCCCCHHHHHHHCC
Q ss_conf ----99998721401001114776878998-----------708976565575544
Q T0567 96 ----LVQLQSQEHRPFRLIGIGDTSLVELA-----------ASNHIIAELYYCFAM 136 (145)
Q Consensus 96 ----L~~~l~~~~~~~RiI~~s~~~l~~l~-----------~~~~~~~~L~~~ls~ 136 (145)
+++++..+..++-++..+-....+.. ..+.+.+++|+.++.
T Consensus 147 ~a~~~AEyf~~~G~dVl~i~DslTr~A~A~reis~~~ge~p~~~gyp~~~~~~~~~ 202 (347)
T 2obl_A 147 TATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPK 202 (347)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 88889999998599711304748899999987664148998655475545301114
No 330
>2ck3_A ATP synthase alpha chain heart isoform; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* 1efr_A* ...
Probab=86.63 E-value=1.5 Score=22.11 Aligned_cols=113 Identities=10% Similarity=0.032 Sum_probs=61.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC------CCCCCCC-EECCCCCCHHHHHHHHHHHC-----CCEEEECCHHHCCHH
Q ss_conf 99589875899888899999986212------4267852-41257889888899998625-----874874374206877
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGR------NAQGEFV-YRELTPDNAPQLNDFIALAQ-----GGTLVLSHPEHLTRE 91 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~------~~~~~fv-~~~~~~~~~~~~~~~l~~a~-----gGtL~l~ei~~L~~~ 91 (145)
..-+.|.|..|+||+.++..+-.... ...+.++ .+....+...+..++++... .-|+++-.-...|..
T Consensus 162 Gqr~~I~g~~g~GKt~l~~~~~~n~~~~~~~~~~~~~~~~V~~~iGer~~e~~~~~~~~~~~~~~~~tv~v~~ts~~~~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHH
T ss_conf 87776556999998999999999898740454346841899998653578999999975036865434999977876378
Q ss_pred HHHH-------HHHHHHHCCHHHEEEECCCCCHHHHH-----------HCCCCCHHHHHHHCC
Q ss_conf 8999-------99998721401001114776878998-----------708976565575544
Q T0567 92 QQYH-------LVQLQSQEHRPFRLIGIGDTSLVELA-----------ASNHIIAELYYCFAM 136 (145)
Q Consensus 92 ~Q~~-------L~~~l~~~~~~~RiI~~s~~~l~~l~-----------~~~~~~~~L~~~ls~ 136 (145)
.|.. +++++..+..++-++.-+-....+.. .+..+.+++|+.++.
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~~Vll~~Dsltr~a~A~rEis~~~~e~P~~~gYp~~~~~~l~~ 304 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR 304 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 888889999999999986798379996273588899999998638999866767527888679
No 331
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, cell cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=86.53 E-value=0.29 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=18.0
Q ss_pred CCEEEECCCCCCHHHHHHHH
Q ss_conf 95898758998888999999
Q T0567 25 IAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~i 44 (145)
-.||+.|++|+||+++-..|
T Consensus 19 fnIlVvG~sg~GKSTlINsL 38 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSL 38 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 49999889979699999998
No 332
>1xew_X SMC protein; structural maintenance of chromosomes, ABC-atpases, condensin, cohesin, cell cycle; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1xex_A*
Probab=86.51 E-value=0.32 Score=25.77 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=19.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 58987589988889999998621
Q T0567 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~s 48 (145)
-.+|.|+.|+||+++-.+|...-
T Consensus 28 ~~~I~G~NGsGKSsildAI~~~l 50 (182)
T 1xew_X 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHT
T ss_pred CEEEECCCCCCCCHHHHHHHHHC
T ss_conf 47998988887343989888741
No 333
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.47 E-value=0.73 Score=23.82 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=15.8
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
-|=|+|.||.||+++-..+
T Consensus 57 ~IGItG~PGaGKSTLi~~L 75 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDAL 75 (337)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHH
T ss_conf 9944489998899999999
No 334
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.30 E-value=0.42 Score=25.14 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|--
T Consensus 41 Ge~~~llGpsGsGKSTLlr~i~G 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999998649999999974
No 335
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi}
Probab=86.05 E-value=0.43 Score=25.05 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=13.5
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-+-|.|+.|+||+++.+.|-
T Consensus 118 evvgLvG~NGaGKSTLlkiLa 138 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCHHHHHHHHHH
T ss_conf 999999999975999999996
No 336
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 2jj9_A* 2jhr_A* 1jwy_A* 1jx2_A* 1fmv_A ...
Probab=86.01 E-value=0.42 Score=25.13 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=19.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..++|.||.|+||+.-++.+
T Consensus 170 ~~nQsIiisGESGAGKTe~tK~i 192 (770)
T 1w9i_A 170 RQNQSLLITGESGAGKTENTKKV 192 (770)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 89807999679988876999999
No 337
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.95 E-value=1.4 Score=22.24 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=18.4
Q ss_pred CCCCEEEECCCCCCHHHHHH--HHHHHC
Q ss_conf 79958987589988889999--998621
Q T0567 23 TDIAVWLYGAPGTGRMTGAR--YLHQFG 48 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~--~iH~~s 48 (145)
-...|++.+++|+|||.++- ++....
T Consensus 43 g~~~vi~~apTGsGKT~~~~l~~l~~~~ 70 (367)
T 1hv8_A 43 DEYNIVAQARTGSGKTASFAIPLIELVN 70 (367)
T ss_dssp TCSEEEEECCSSSSHHHHHHHHHHHHSC
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999899995799999999999976
No 338
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=85.86 E-value=1.4 Score=22.27 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=15.9
Q ss_pred HCCCCCEEEECCCCCCHHHH
Q ss_conf 14799589875899888899
Q T0567 21 SETDIAVWLYGAPGTGRMTG 40 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~ 40 (145)
-..+..+++.+++||||+..
T Consensus 16 lrk~~~~vl~~~TGsGKT~~ 35 (451)
T 2jlq_A 16 FRKKRLTIMDLHPGAGKTKR 35 (451)
T ss_dssp GSTTCEEEECCCTTSSCCTT
T ss_pred HHCCCCEEEEECCCCCHHHH
T ss_conf 97699889994899848999
No 339
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle protein; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* 3i5g_A 3i5f_A ...
Probab=85.83 E-value=0.88 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.409 Sum_probs=18.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..++|.||.|+||+.-++.+
T Consensus 167 ~~~QsIiisGESGAGKTe~~K~i 189 (837)
T 1kk8_A 167 RENQSCLITGESGAGKTENTKKV 189 (837)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 89818999658999878999999
No 340
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.73 E-value=1.7 Score=21.86 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=22.6
Q ss_pred HHCCCCCEEEECCCCCCHHHHHH--HHHHHCCCCCCCCC
Q ss_conf 61479958987589988889999--99862124267852
Q T0567 20 LSETDIAVWLYGAPGTGRMTGAR--YLHQFGRNAQGEFV 56 (145)
Q Consensus 20 ~a~~~~pvli~Ge~GtGK~~~A~--~iH~~s~~~~~~fv 56 (145)
....+..|++..++||||+.+.- +|+........+.+
T Consensus 41 ~~l~g~dvlv~apTGsGKTlay~lp~l~~l~~~~~~~~~ 79 (391)
T 1xti_A 41 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV 79 (391)
T ss_dssp HHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCE
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 997599889989998369999999999974404787248
No 341
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=85.69 E-value=1.7 Score=21.86 Aligned_cols=39 Identities=8% Similarity=-0.067 Sum_probs=21.7
Q ss_pred CCEEEECCHHHCCHHHHHHHHHHHHH--CCHHHEEEECCCCC
Q ss_conf 87487437420687789999999872--14010011147768
Q T0567 77 GGTLVLSHPEHLTREQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
Q Consensus 77 gGtL~l~ei~~L~~~~Q~~L~~~l~~--~~~~~RiI~~s~~~ 116 (145)
-..+++||+|.++......+ .++.. .....++|+.|...
T Consensus 94 ~~~IIiDEaH~~~~~~~~~~-g~l~~~~~~~~~~~i~mSAT~ 134 (431)
T 2v6i_A 94 YNLYIMDEAHFLDPASVAAR-GYIETRVSMGDAGAIFMTATP 134 (431)
T ss_dssp CSEEEEESTTCCSHHHHHHH-HHHHHHHHTTSCEEEEEESSC
T ss_pred CCEEEEEECCCCCHHHHHHH-HHHHHHHCCCCCEEEEEECCC
T ss_conf 55899730002575168887-799985106774599985478
No 342
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.65 E-value=0.51 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=18.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5898758998888999999862
Q T0567 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
-|++.|=||+||+++|+.|-..
T Consensus 41 viv~vGLPa~GKs~ia~~l~~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899989999999999999
No 343
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=85.58 E-value=0.51 Score=24.64 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=18.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 95898758998888999999862
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
.=|||.|++|.||+.+|=.+-..
T Consensus 145 ~GVLI~G~SG~GKSelALeLi~r 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999848999879999999980
No 344
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.52 E-value=0.78 Score=23.66 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 999999998614799589875899888899999986
Q T0567 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 11 ~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-++...+++--.....|.|.|.||+||+++-.+|-.
T Consensus 26 ~~~~~~l~~~~~~~l~IaivG~pNvGKSSLiNaL~g 61 (270)
T 1h65_A 26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 999988754356776799989999989999999848
No 345
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus}
Probab=85.39 E-value=0.43 Score=25.07 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=19.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..++|.||.|+||+.-++.+
T Consensus 154 ~~~Q~iiisGeSGaGKTe~~k~~ 176 (1080)
T 2dfs_A 154 ERNQSIIVSGESGAGKTVSAKYA 176 (1080)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99907999847999878999999
No 346
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=85.18 E-value=1.8 Score=21.71 Aligned_cols=111 Identities=8% Similarity=0.015 Sum_probs=59.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECC-CCCCHHHHHHHHHHH-----CCCEEEECCHHHCCHHHHHH--
Q ss_conf 9958987589988889999998621242678524125-788988889999862-----58748743742068778999--
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL-TPDNAPQLNDFIALA-----QGGTLVLSHPEHLTREQQYH-- 95 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~-~~~~~~~~~~~l~~a-----~gGtL~l~ei~~L~~~~Q~~-- 95 (145)
..-+.|.|..|+||++++.-+... +.....+.+-| ..+...+..++++.. -..|.++-.-..-|...|..
T Consensus 162 Gqr~~ifgg~gvGKt~l~~~~~~~--~~~~~~v~V~~~iGer~rev~~~~~~~~~~~~l~~tv~v~~~~~~~~~~r~~a~ 239 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIIN--QKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHG--GGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH--HCCCCCEEEEEEECCCCEEHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf 867766768887677899999986--305674489997545502289999987543870037887547999999999888
Q ss_pred -----HHHHHHHCCHHHEEEECCCCCHHHH-----------HHCCCCCHHHHHHHCC
Q ss_conf -----9999872140100111477687899-----------8708976565575544
Q T0567 96 -----LVQLQSQEHRPFRLIGIGDTSLVEL-----------AASNHIIAELYYCFAM 136 (145)
Q Consensus 96 -----L~~~l~~~~~~~RiI~~s~~~l~~l-----------~~~~~~~~~L~~~ls~ 136 (145)
+++++..+..++-++.-+-....+. .....+.+++|+.++.
T Consensus 240 ~~a~tiAEyfrd~g~~VLl~~D~ltr~a~A~rEis~~~~e~P~~~gyp~~~~~~l~~ 296 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSR 296 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 664178888986699489997072688889999898738999877889718888889
No 347
>1m2o_B GTP binding, GTP-binding protein SAR1; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.12 E-value=0.47 Score=24.83 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.-|+|.|++|+||+++.+.+-.
T Consensus 24 ~KI~ivG~~nvGKSTLln~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 2999999999988999999844
No 348
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=84.96 E-value=0.46 Score=24.89 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=19.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..++|+||.|+||+.-++.+
T Consensus 170 ~~~Qsi~isGeSGaGKTe~~k~~ 192 (1010)
T 1g8x_A 170 RQNQSLLITGESGAGKTENTKKV 192 (1010)
T ss_dssp TCCEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 89957999649988779999999
No 349
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=84.91 E-value=1.9 Score=21.64 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=27.3
Q ss_pred CEEEECCHHHCCHH-HHHHHHHHHHHCCHHHEEEECC-C--CCHHHHHH
Q ss_conf 74874374206877-8999999987214010011147-7--68789987
Q T0567 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIG-D--TSLVELAA 122 (145)
Q Consensus 78 GtL~l~ei~~L~~~-~Q~~L~~~l~~~~~~~RiI~~s-~--~~l~~l~~ 122 (145)
.+|++||+|.|-.. .+..+.++++.-..+.++++.| + .+..++++
T Consensus 152 ~~lVlDEad~ll~~~f~~~v~~Il~~~~~~~Q~il~SATl~~~v~~l~~ 200 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLK 200 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHH
T ss_pred EEEEEECHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 2799864777743573999999999789888799996669989999999
No 350
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=84.87 E-value=0.53 Score=24.57 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9958987589988889999998
Q T0567 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH 45 (145)
..-|+|.|.+|+||+++...|-
T Consensus 29 ~lrI~LvG~tg~GKSSliN~l~ 50 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 5289998999998999999985
No 351
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 2zi3_A* ...
Probab=84.78 E-value=0.3 Score=25.88 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5898758998888999999862
Q T0567 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
-+.|.|..|+||+++++.|+..
T Consensus 26 ~I~IEG~~GsGKST~~k~L~~~ 47 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999898888699999999999
No 352
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=84.76 E-value=0.32 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=17.9
Q ss_pred CEEEECCCCCCHH-HHHHHHHHHCCC
Q ss_conf 5898758998888-999999862124
Q T0567 26 AVWLYGAPGTGRM-TGARYLHQFGRN 50 (145)
Q Consensus 26 pvli~Ge~GtGK~-~~A~~iH~~s~~ 50 (145)
-+++.|..|+||+ ++|++-+....+
T Consensus 101 VIllvG~~GsGKTTTiaKLA~~l~~~ 126 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99985787764245999999999976
No 353
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.62 E-value=0.23 Score=26.57 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898758998888999999862
Q T0567 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~ 47 (145)
|.|.|..|+||+++++.++..
T Consensus 3 I~ieG~dGsGKST~~~~L~~~ 23 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899878899999999999
No 354
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.61 E-value=0.56 Score=24.44 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9958987589988889999998
Q T0567 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH 45 (145)
..-+-|.|+.|+||+++.+.|-
T Consensus 32 Gei~gliGpNGaGKSTll~~i~ 53 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9799999899985999999997
No 355
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ...
Probab=84.57 E-value=0.34 Score=25.59 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 898758998888999999862124
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRN 50 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~ 50 (145)
|.|.|..|+||+++++.+......
T Consensus 7 I~lEG~~GsGKTTla~~Lae~l~~ 30 (331)
T 1e2k_A 7 VYIDGPHGMGKTTTTQLLVALGSR 30 (331)
T ss_dssp EEECSCTTSSHHHHHHHHTC----
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999889777899999999998454
No 356
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
Probab=84.51 E-value=0.78 Score=23.68 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH-HC-CCCCCCCCEECCCC
Q ss_conf 99589875899888899999986-21-24267852412578
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ-FG-RNAQGEFVYRELTP 62 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~-~s-~~~~~~fv~~~~~~ 62 (145)
..-+++.|.-|+||+++|-.+.. .+ .+.......+||.+
T Consensus 18 ~~~i~vsGKGGVGKTTiaa~lA~~LA~~~~G~rVLlVD~Dp 58 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 57999979997609999999999999865899089992699
No 357
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=84.40 E-value=1 Score=23.06 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
Q ss_conf 89999999999861479958987589988889
Q T0567 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMT 39 (145)
Q Consensus 8 ~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~ 39 (145)
..|.++.+.+ ..+.+++|..++||||+.
T Consensus 10 ~~~~~i~~~l----~~~~~~~iEApTGtGKTl 37 (551)
T 3crv_A 10 KLKDKVIEGL----RNNFLVALNAPTGSGKTL 37 (551)
T ss_dssp HHHHHHHHHH----HTTCEEEEECCTTSSHHH
T ss_pred HHHHHHHHHH----HCCCEEEEECCCCHHHHH
T ss_conf 9999999999----639939999999757999
No 358
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=84.36 E-value=0.57 Score=24.39 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q ss_conf 89875899888899999986
Q T0567 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~ 46 (145)
.+|+|+.|+||+.+-.+|+.
T Consensus 29 nvivG~NGsGKS~ILeAI~l 48 (359)
T 2o5v_A 29 TGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
T ss_conf 99999998619999999999
No 359
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=84.07 E-value=2 Score=21.43 Aligned_cols=25 Identities=8% Similarity=0.007 Sum_probs=19.3
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 8614799589875899888899999
Q T0567 19 QLSETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 19 ~~a~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
........|++..++||||+.+.-.
T Consensus 86 p~il~g~dviv~A~TGSGKTla~~l 110 (262)
T 3ly5_A 86 RPLLEGRDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp HHHHHTCCCEECCCTTSCHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 9997799889987899975899999
No 360
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=83.99 E-value=0.61 Score=24.24 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|++|+||+.+...+-
T Consensus 6 i~vvG~~gvGKTsLi~r~~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989949999999997
No 361
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=83.95 E-value=0.8 Score=23.60 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 89875899888899999986212426785241257
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELT 61 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~ 61 (145)
++..|-.|+||+++|-.+-..-.+.......+||-
T Consensus 330 ~~~sGKGGvGKTT~a~~lA~~la~~G~rVllvd~D 364 (589)
T 1ihu_A 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99948998726999999999999689937999568
No 362
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=83.64 E-value=0.62 Score=24.21 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 898758998888999999862124
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRN 50 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~ 50 (145)
|.|.|..|+||+++++.+...-..
T Consensus 15 I~~EG~iGsGKST~i~~L~~~l~~ 38 (341)
T 1osn_A 15 IYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999898677899999999998723
No 363
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=83.56 E-value=0.98 Score=23.15 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=22.6
Q ss_pred CEEEECCCCCCHHHHHHHHH--HHCCCCCCCCCEECCC
Q ss_conf 58987589988889999998--6212426785241257
Q T0567 26 AVWLYGAPGTGRMTGARYLH--QFGRNAQGEFVYRELT 61 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH--~~s~~~~~~fv~~~~~ 61 (145)
-+++.|.-|+||+++|-.+. ....+.......++|-
T Consensus 20 ~i~~sGKGGVGKTT~aa~LA~~lala~~G~rVLlvd~D 57 (348)
T 3io3_A 20 WIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99996999562999999999999998589908999579
No 364
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.48 E-value=0.28 Score=26.02 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-+-|.|+.|+||+++.+.|--
T Consensus 31 Ge~~~i~G~sGsGKSTLlr~i~G 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98999999999659999999972
No 365
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=83.43 E-value=1.2 Score=22.70 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=16.9
Q ss_pred CCCCCEEEECCCCCCHHHHHH
Q ss_conf 479958987589988889999
Q T0567 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~ 42 (145)
..+..+++..++|+||+.++.
T Consensus 29 l~g~dvlv~apTGsGKT~~~~ 49 (337)
T 2z0m_A 29 LQGKNVVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HTTCCEEEECCTTSSHHHHHH
T ss_pred HCCCCEEEECCCCCHHHHHHH
T ss_conf 669989998599954999999
No 366
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, transit peptide, disease mutation, nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=83.24 E-value=2 Score=21.52 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=20.9
Q ss_pred CEEEECCCCCCHHHHHHHH-HHHCCC-CCCCCCEECCC
Q ss_conf 5898758998888999999-862124-26785241257
Q T0567 26 AVWLYGAPGTGRMTGARYL-HQFGRN-AQGEFVYRELT 61 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i-H~~s~~-~~~~fv~~~~~ 61 (145)
-|=|+|+||+||+++-..+ .....+ .+-..+.+|+.
T Consensus 76 ~iGitG~pGaGKStli~~l~~~~~~~g~~vaVla~Dp~ 113 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 78630799888999999999999858972889855898
No 367
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.12 E-value=2.2 Score=21.21 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=19.0
Q ss_pred HHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 614799589875899888899999
Q T0567 20 LSETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 20 ~a~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
....+..|++..++||||+...-.
T Consensus 57 ~il~G~dvvi~apTGsGKTla~~l 80 (230)
T 2oxc_A 57 LGRCGLDLIVQAKSGTGKTCVFST 80 (230)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 995799889993799984277778
No 368
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=83.07 E-value=2 Score=21.48 Aligned_cols=40 Identities=10% Similarity=-0.044 Sum_probs=21.3
Q ss_pred CCEEEECCHHHCCHHHHHHHHHHHHH-CCHHHEEEECCCCC
Q ss_conf 87487437420687789999999872-14010011147768
Q T0567 77 GGTLVLSHPEHLTREQQYHLVQLQSQ-EHRPFRLIGIGDTS 116 (145)
Q Consensus 77 gGtL~l~ei~~L~~~~Q~~L~~~l~~-~~~~~RiI~~s~~~ 116 (145)
-..+++||+|.++.+.-..+..+... .....++|..|...
T Consensus 278 ~~~IIiDEaH~~d~~~~l~~g~l~~l~~~~~~~vVlmSATp 318 (618)
T 2whx_A 278 YNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATP 318 (618)
T ss_dssp CSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 86899918960584145567899973405784699986899
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=83.07 E-value=0.41 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995898758998888999999862
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145)
..-+-|.|+.|+||+++.+.|--.
T Consensus 26 Ge~~~i~G~nGaGKSTll~~i~Gl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 989999999998399999999759
No 370
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.07 E-value=0.85 Score=23.48 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.9
Q ss_pred HCCCCC--------EEEECCCCCCHHHHHHHH
Q ss_conf 147995--------898758998888999999
Q T0567 21 SETDIA--------VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 21 a~~~~p--------vli~Ge~GtGK~~~A~~i 44 (145)
+....| |++.|++|+||+.+-..+
T Consensus 11 ~~~~~p~~~~y~~KvvvvG~~~vGKTsLi~~~ 42 (189)
T 2gf9_A 11 SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRY 42 (189)
T ss_dssp ---CCCTTCSEEEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
T ss_conf 68999988773679999999996989999999
No 371
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=82.85 E-value=0.68 Score=24.00 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|.+|+||+++...+
T Consensus 28 IvvlG~~~vGKTSLi~rl 45 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999996892899999999
No 372
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=82.68 E-value=0.69 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 79958987589988889999998
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
+..-|.|.|.+|+||+++...+-
T Consensus 3 ~~~kI~ivG~~nvGKSSLin~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 77699999999998999999996
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=82.66 E-value=0.75 Score=23.75 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=17.1
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|++.|++|+||+.+.+.+-
T Consensus 23 Ki~lvG~~~vGKTSLi~r~~ 42 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989919899999997
No 374
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.20 E-value=0.75 Score=23.75 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHCCCCC-EEEECCCCCCHHHHHHHHH
Q ss_conf 6147995-8987589988889999998
Q T0567 20 LSETDIA-VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 20 ~a~~~~p-vli~Ge~GtGK~~~A~~iH 45 (145)
+...+.| |.|.|.+|+||+++-+.|-
T Consensus 18 ~p~~~~~~I~ivG~~nvGKSSLin~L~ 44 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 898899899999999987999999971
No 375
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=82.18 E-value=0.8 Score=23.62 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=18.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.-|+|.|.+|+||+++...+..
T Consensus 49 p~IlivG~~nvGKTSLl~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 4899999999988899999956
No 376
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=82.17 E-value=1.8 Score=21.78 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 999999999861479958987589988889999998
Q T0567 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 10 m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
+.+..+.+........-+++.|.+|+||+.+.+..-
T Consensus 141 ~~~~~~~~~~~~~~~~k~vv~G~~~vGKTsLi~r~~ 176 (332)
T 2wkq_A 141 IKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 888653622134689879999969955899999994
No 377
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A*
Probab=82.00 E-value=0.39 Score=25.32 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.3
Q ss_pred CCCC-EEEECCCCCCHHHHHHHHH
Q ss_conf 7995-8987589988889999998
Q T0567 23 TDIA-VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 23 ~~~p-vli~Ge~GtGK~~~A~~iH 45 (145)
.+.| |.+.|+.++||+++..++=
T Consensus 24 ~~~p~i~VvG~~saGKSTliNaLl 47 (341)
T 2x2e_A 24 LDLPQIAVVGGQSAGKSSVLENFV 47 (341)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 888869998089998999999996
No 378
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens}
Probab=81.85 E-value=2.2 Score=21.24 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=17.7
Q ss_pred HHCCCCCEEEECCCCCCHHHHHH
Q ss_conf 61479958987589988889999
Q T0567 20 LSETDIAVWLYGAPGTGRMTGAR 42 (145)
Q Consensus 20 ~a~~~~pvli~Ge~GtGK~~~A~ 42 (145)
.......|++..++||||+.++-
T Consensus 73 ~~l~gkdvlv~apTGsGKTlay~ 95 (414)
T 3eiq_A 73 PCIKGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp HHHTTCCEEECCCSCSSSHHHHH
T ss_pred HHHCCCCEEEECCCCCHHHHHHH
T ss_conf 99849988998689833999999
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.80 E-value=0.85 Score=23.48 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=16.4
Q ss_pred CCEEEECCCCCCHHHHHHH-HH
Q ss_conf 9589875899888899999-98
Q T0567 25 IAVWLYGAPGTGRMTGARY-LH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~-iH 45 (145)
.-|++.|++|+||+.+.+. ++
T Consensus 4 iKi~lvG~~~vGKTSLi~~~~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999999899198999999972
No 380
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=81.75 E-value=0.66 Score=24.07 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9958987589988889999998
Q T0567 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH 45 (145)
..-|++.|.+|+||+++-+.+-
T Consensus 25 ~~kI~llG~~~aGKTTLi~rl~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 6479999999998899999995
No 381
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10}
Probab=81.51 E-value=0.45 Score=24.96 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=8.7
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 898758998888999
Q T0567 27 VWLYGAPGTGRMTGA 41 (145)
Q Consensus 27 vli~Ge~GtGK~~~A 41 (145)
+.+.|..|+||++++
T Consensus 653 ~~i~G~sGsGKStL~ 667 (972)
T 2r6f_A 653 VAVTGVSGSGKSTLV 667 (972)
T ss_dssp EECCBCTTSSHHHHH
T ss_pred EEECCCCCCCCCHHH
T ss_conf 420255677874023
No 382
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=81.37 E-value=0.69 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHH
Q ss_conf 999999861479958987589988889
Q T0567 13 YRRRLQQLSETDIAVWLYGAPGTGRMT 39 (145)
Q Consensus 13 l~~~i~~~a~~~~pvli~Ge~GtGK~~ 39 (145)
..+.|..+-..+.-++|.|++||||++
T Consensus 10 ~~~aIp~~l~~~~~~vi~~~TGSGKT~ 36 (459)
T 2z83_A 10 MGRGSPNMLRKRQMTVLDLHPGSGKTR 36 (459)
T ss_dssp -----CGGGSTTCEEEECCCTTSCTTT
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 898989998639838999689997899
No 383
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=81.01 E-value=0.93 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=17.0
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-|++.|.+|+||+.+.+.+-
T Consensus 7 ~Ki~lvG~~~vGKTsLl~~~~ 27 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999989959999999997
No 384
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.72 E-value=0.89 Score=23.37 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=16.2
Q ss_pred CEEEECCCCCCHHHHHH-HHH
Q ss_conf 58987589988889999-998
Q T0567 26 AVWLYGAPGTGRMTGAR-YLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~-~iH 45 (145)
-|+|.|++|+||+.+.. +++
T Consensus 27 KivviG~~~vGKSSLi~~~~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999799879999999970
No 385
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=80.71 E-value=1.7 Score=21.86 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=20.2
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 8614799589875899888899999
Q T0567 19 QLSETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 19 ~~a~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
.....+..|++..++||||+.++-.
T Consensus 61 ~~il~g~dviv~a~TGsGKTla~~l 85 (245)
T 3dkp_A 61 PVMLHGRELLASAPTGSGKTLAFSI 85 (245)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 9997799889987899828888735
No 386
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural genomics, NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii OT3}
Probab=80.48 E-value=1.8 Score=21.68 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.8
Q ss_pred CCC-EEEECCCCCCHHHHHHHHH
Q ss_conf 995-8987589988889999998
Q T0567 24 DIA-VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~p-vli~Ge~GtGK~~~A~~iH 45 (145)
+.| |.|.|.+++||+++...+-
T Consensus 166 ~~~~V~ivG~pnvGKSSLin~Lt 188 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC
T ss_pred CCCEEEEECCCCCHHHHHHHHHH
T ss_conf 88879998999950759999985
No 387
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=80.03 E-value=0.82 Score=23.56 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=18.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.-|+|.|.+|+||+++.+.+..
T Consensus 22 ~KIlivG~~~vGKTsLl~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999999899899999999968
No 388
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics, NPPSFA; HET: GDP; 1.96A {Thermus thermophilus HB8}
Probab=79.77 E-value=1.1 Score=22.91 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|.|.|.+|+||+++.+.+-
T Consensus 4 I~iiG~~nvGKSsLin~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999998999999997
No 389
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=79.76 E-value=1.1 Score=22.88 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.1
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-|+|.|.+|+||+++-..+-
T Consensus 8 ~KIvliG~~~vGKSSLi~~l~ 28 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 489999999975999999995
No 390
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3dtp_B 3dtp_A
Probab=79.73 E-value=0.51 Score=24.68 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=19.5
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
..+..|+|.||.|+||+.-++.+
T Consensus 167 ~~~QsiiisGeSGaGKTe~~k~~ 189 (1184)
T 1i84_S 167 REDQSILCTGESGAGKTENTKKV 189 (1184)
T ss_dssp TCCEEEECCCSTTSSTTHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 99957998569988878999999
No 391
>3md0_A Arginine/ornithine transport system ATPase; seattle structural genomics center for infectious disease, RAS, RAS-like GTPase; HET: GDP; 2.45A {Mycobacterium tuberculosis}
Probab=79.58 E-value=2 Score=21.42 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.3
Q ss_pred CCEEEECCCCCCHHHHHHHH
Q ss_conf 95898758998888999999
Q T0567 25 IAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~i 44 (145)
.-|-|+|.||.||+++-..+
T Consensus 80 ~rIgItG~PGaGKSTLi~~L 99 (355)
T 3md0_A 80 HRVGITGVPGVGKSTAIEAL 99 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 49985799999799999999
No 392
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=79.57 E-value=1.1 Score=22.83 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=16.7
Q ss_pred CEEEECCCCCCHHHHHH-HHHH
Q ss_conf 58987589988889999-9986
Q T0567 26 AVWLYGAPGTGRMTGAR-YLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~-~iH~ 46 (145)
-|++.|++|+||+.+.. +++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~~~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998989999999859
No 393
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.51 E-value=1.8 Score=21.75 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=21.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHH-HCCCCCCCCCEEC
Q ss_conf 9589875899888899999986-2124267852412
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ-FGRNAQGEFVYRE 59 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~-~s~~~~~~fv~~~ 59 (145)
.=++|.|.+|+||++++..+-. .......++..++
T Consensus 243 eL~vi~G~~g~GKSt~~~~la~~~a~~~g~~v~~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 536776354242999999988756651377323343
No 394
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.50 E-value=1.1 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.9
Q ss_pred CEEEECCCCCCHHHHHHH-HH
Q ss_conf 589875899888899999-98
Q T0567 26 AVWLYGAPGTGRMTGARY-LH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~-iH 45 (145)
-|++.|++|+||+.+.+. ++
T Consensus 5 KI~vvG~~~vGKTsLi~r~~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999960
No 395
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=79.35 E-value=1.6 Score=21.92 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=23.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 898758998888999999862124267852412578
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~ 62 (145)
+.|+|--|+||+++|--+-..-.........+||.+
T Consensus 4 Iai~gKGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 39 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999899987699999999999998799789993789
No 396
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=79.31 E-value=1.1 Score=22.95 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=19.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 79958987589988889999998
Q T0567 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
+..-|++.|.+|+||+++.+.+-
T Consensus 19 ~k~KIvl~G~~~vGKSSli~~l~ 41 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVF 41 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 83199999989999999999997
No 397
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=79.17 E-value=3.1 Score=20.43 Aligned_cols=87 Identities=11% Similarity=0.181 Sum_probs=46.6
Q ss_pred EEEECCCCCCHHH-HHHHHHHHCCCCCCCCCEECCCC---------------------CCHHHHHHHHHHH----CCCEE
Q ss_conf 8987589988889-99999862124267852412578---------------------8988889999862----58748
Q T0567 27 VWLYGAPGTGRMT-GARYLHQFGRNAQGEFVYRELTP---------------------DNAPQLNDFIALA----QGGTL 80 (145)
Q Consensus 27 vli~Ge~GtGK~~-~A~~iH~~s~~~~~~fv~~~~~~---------------------~~~~~~~~~l~~a----~gGtL 80 (145)
-+|+|+..+||++ +-+.+|...... ...+.++... .+..++...+... .-.++
T Consensus 15 ~~i~GpMfSGKTteLi~~~~~~~~~g-~kvlvikp~~D~R~~~~i~s~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~dvI 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD-VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCC-CEEEEEEEEEEECCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHCCCCCEE
T ss_conf 99994517788999999999999879-94999988056147871586506632314431431567799876316776599
Q ss_pred EECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCC
Q ss_conf 743742068778999999987214010011147768
Q T0567 81 VLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
Q Consensus 81 ~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~ 116 (145)
++||++-++. ....+.+.+...... .+++.-..|
T Consensus 94 ~IDEaQFf~d-~i~~v~~~~~~~g~~-Viv~GLd~D 127 (223)
T 2b8t_A 94 GIDEVQFFDD-RICEVANILAENGFV-VIISGLDKN 127 (223)
T ss_dssp EECSGGGSCT-HHHHHHHHHHHTTCE-EEEECCSBC
T ss_pred EEECHHHCCH-HHHHHHHHHHHCCCE-EEEEEEEHH
T ss_conf 9800011334-689999999851832-899976403
No 398
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=79.11 E-value=1.2 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.2
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
=|++.|++|+||+++...+
T Consensus 22 KivvvG~~~vGKTsLl~~~ 40 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRF 40 (213)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999998899999999
No 399
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2ke5_A*
Probab=79.11 E-value=1.2 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|++|+||+++.+.+-
T Consensus 7 IvvvG~~~vGKSsli~r~~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989958899999997
No 400
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.00 E-value=2.1 Score=21.39 Aligned_cols=39 Identities=8% Similarity=0.034 Sum_probs=25.2
Q ss_pred CEEEECCHHHC-CHHHHHHHHHHHHHCCHHHEEEE-CCCCC
Q ss_conf 74874374206-87789999999872140100111-47768
Q T0567 78 GTLVLSHPEHL-TREQQYHLVQLQSQEHRPFRLIG-IGDTS 116 (145)
Q Consensus 78 GtL~l~ei~~L-~~~~Q~~L~~~l~~~~~~~RiI~-~s~~~ 116 (145)
.++.+||.|.| ....+..+.++++.-..+.++++ |++-+
T Consensus 173 ~~lViDEad~ll~~~f~~~i~~Il~~l~~~~Q~il~SATl~ 213 (236)
T 2pl3_A 173 QMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp CEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred EEEEHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 56634668898860359999999996898880899982498
No 401
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.00 E-value=2.1 Score=21.39 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=17.0
Q ss_pred HCCCCCEEEECCCCCCHHHHH
Q ss_conf 147995898758998888999
Q T0567 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A 41 (145)
...+..|++..++||||+.+.
T Consensus 49 il~g~dvli~apTGsGKTlay 69 (417)
T 2i4i_A 49 IKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp HHTTCCEEEECCTTSCHHHHH
T ss_pred HHCCCCEEEECCCCCHHHHHH
T ss_conf 975998899868996699999
No 402
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.90 E-value=3.2 Score=20.39 Aligned_cols=98 Identities=10% Similarity=0.096 Sum_probs=50.9
Q ss_pred HHHCCCCCEEEECCCCCCHHHHHH--HHHHHCCCCCCCCCEECCCC-----------------------------CC---
Q ss_conf 861479958987589988889999--99862124267852412578-----------------------------89---
Q T0567 19 QLSETDIAVWLYGAPGTGRMTGAR--YLHQFGRNAQGEFVYRELTP-----------------------------DN--- 64 (145)
Q Consensus 19 ~~a~~~~pvli~Ge~GtGK~~~A~--~iH~~s~~~~~~fv~~~~~~-----------------------------~~--- 64 (145)
-....+..|++..++||||+...- .++.......++...+=|.. ..
T Consensus 35 p~il~g~dvi~~a~TGsGKTlay~lp~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (206)
T 1vec_A 35 PIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114 (206)
T ss_dssp HHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHH
T ss_pred HHHHCCCCEEEECCCCCCCCEEEECCHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 99986998886536764302043142555211124675249984207888999999987510256763212367740888
Q ss_pred ---------------HHHHHHHHHHH-----CCCEEEECCHHHCC-HHHHHHHHHHHHHCCHHHEE-EECCCCC
Q ss_conf ---------------88889999862-----58748743742068-77899999998721401001-1147768
Q T0567 65 ---------------APQLNDFIALA-----QGGTLVLSHPEHLT-REQQYHLVQLQSQEHRPFRL-IGIGDTS 116 (145)
Q Consensus 65 ---------------~~~~~~~l~~a-----~gGtL~l~ei~~L~-~~~Q~~L~~~l~~~~~~~Ri-I~~s~~~ 116 (145)
+..+..++... .-.++++||.|.|- ......+.++++.-..+.++ ++|.+.+
T Consensus 115 ~~~~l~~~~~ivV~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~~l~SAT~~ 188 (206)
T 1vec_A 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred HHHHHHHHCCCEEECCCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 99987750671880886011123441010454416886112211111419999999985899887999980599
No 403
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=78.83 E-value=3.2 Score=20.37 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=61.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC--CCCCCCC-EECCCCCCHHHHHHHHHHH-----CCCEEEECCHHHCCHHHHHH
Q ss_conf 99589875899888899999986212--4267852-4125788988889999862-----58748743742068778999
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YRELTPDNAPQLNDFIALA-----QGGTLVLSHPEHLTREQQYH 95 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~--~~~~~fv-~~~~~~~~~~~~~~~l~~a-----~gGtL~l~ei~~L~~~~Q~~ 95 (145)
..-+.|.|.+|+||++++..|-.... .....++ .+-+..+...+..++++.- -.-|.++-+-...|...+..
T Consensus 152 GQr~~Ifg~~g~GKt~l~~~i~~~~~~~~~~~~~v~V~~~iGer~~ev~e~~~~~~~~~~l~~tv~v~~ts~~~~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 41210246756766489999999987427888628999860423477999998510122322221222347774677778
Q ss_pred -------HHHHHH-HCCHHHEEEECCCCCHHH-----------HHHCCCCCHHHHHHHCCC
Q ss_conf -------999987-214010011147768789-----------987089765655755442
Q T0567 96 -------LVQLQS-QEHRPFRLIGIGDTSLVE-----------LAASNHIIAELYYCFAMT 137 (145)
Q Consensus 96 -------L~~~l~-~~~~~~RiI~~s~~~l~~-----------l~~~~~~~~~L~~~ls~~ 137 (145)
++++.. +...++-+++-+.....+ ....+.+.+++|+.++.+
T Consensus 232 ~~~~a~tiAEyfr~~~G~~Vll~~Ds~tr~A~A~rEis~~~ge~p~~~gyp~~~~~~l~~l 292 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATL 292 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8887756788998751355013324037889888877540133344434443035666889
No 404
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome dynamics; HET: GDP; 2.5A {Homo sapiens}
Probab=78.82 E-value=1.1 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.6
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
=|++.|++|+||+.+...+.
T Consensus 36 KI~viG~~~vGKTSLi~rl~ 55 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989988899999996
No 405
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A*
Probab=78.75 E-value=1.1 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|+|.|++|+||+.+.+.+
T Consensus 32 IvivG~~~vGKTSLi~rl 49 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRF 49 (191)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999998992989999999
No 406
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=78.75 E-value=2.1 Score=21.35 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=17.3
Q ss_pred CCCEEEECCCCCCHHHHHHHH
Q ss_conf 995898758998888999999
Q T0567 24 DIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~i 44 (145)
+..+++..++|+|||.+|-.+
T Consensus 23 ~~~~li~~pTG~GKTl~a~~~ 43 (494)
T 1wp9_A 23 ETNCLIVLPTGLGKTLIAMMI 43 (494)
T ss_dssp GSCEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHH
T ss_conf 799799989977399999999
No 407
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=78.59 E-value=1.2 Score=22.59 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=16.6
Q ss_pred CCEEEECCCCCCHHHHHHHH
Q ss_conf 95898758998888999999
Q T0567 25 IAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~i 44 (145)
.-|++.|++|+||+.+...+
T Consensus 3 ~KivivG~~~vGKTsli~~~ 22 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 18999996997789999999
No 408
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=78.55 E-value=1.2 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.4
Q ss_pred CEEEECCCCCCHHHHHHH-HH
Q ss_conf 589875899888899999-98
Q T0567 26 AVWLYGAPGTGRMTGARY-LH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~-iH 45 (145)
=|++.|++|+||+.+.+. ++
T Consensus 14 Ki~vvG~~~vGKTsLi~r~~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999985
No 409
>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes, signaling protein; HET: GDP; 1.80A {Homo sapiens} PDB: 2gjs_A*
Probab=78.54 E-value=1.2 Score=22.58 Aligned_cols=19 Identities=47% Similarity=0.719 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|++|+||+.+.+.+-
T Consensus 10 i~vvG~~~vGKTsli~r~~ 28 (174)
T 2dpx_A 10 VLLLGAPGVGKSALARIFG 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999979939899999994
No 410
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A*
Probab=78.41 E-value=1.3 Score=22.52 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|++|+||+++.+.+-
T Consensus 18 IvvvG~~~vGKTsLi~~~~ 36 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999919899999997
No 411
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=78.31 E-value=1.6 Score=22.01 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=18.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
..-|++.|++|+||+++-+.+..
T Consensus 18 ~~kI~ivG~~~vGKStLi~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 67999999899998999999829
No 412
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=78.22 E-value=1.2 Score=22.66 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=16.2
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
-|++.|++|+||+.+...+
T Consensus 18 Ki~vvG~~~vGKSsli~r~ 36 (211)
T 3bbp_A 18 KLVFLGEQSVGKTSLITRF 36 (211)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999995995999999999
No 413
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=78.20 E-value=1.2 Score=22.69 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|+|.|++|+||+.+...+-
T Consensus 12 i~ivG~~~vGKTsLi~~~~ 30 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999979979899999997
No 414
>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A*
Probab=78.13 E-value=1.3 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=16.9
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.=|++.|+.|+||+.+...+-
T Consensus 11 ~Ki~vvG~~~vGKTsli~~~~ 31 (197)
T 2rex_B 11 CKLVLVGDVQCGKTAMLQVLA 31 (197)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999999928899999997
No 415
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=78.09 E-value=1.3 Score=22.47 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.9
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
-|++.|.+|+||+++...+
T Consensus 10 Ki~lvG~~~vGKSsLi~~~ 28 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQY 28 (207)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999998990999999999
No 416
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Probab=78.07 E-value=1.2 Score=22.63 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|.+|+||+++...+
T Consensus 26 I~vlG~~~vGKTsLi~rl 43 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRY 43 (191)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999993989999999
No 417
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=78.07 E-value=1.3 Score=22.46 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.9
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
=|++.|++|+||+.+...+-
T Consensus 39 KIvlvG~~~vGKTSLi~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999938977899999998
No 418
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.98 E-value=1.3 Score=22.44 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=18.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 479958987589988889999998
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~iH 45 (145)
....-|++.|++|+||+.+...+-
T Consensus 26 ~~~iKIvvvG~~~vGKTSLi~r~~ 49 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 986599998999979999999996
No 419
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=77.98 E-value=1.3 Score=22.42 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=44.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH-HCCCCCCCCCE---------------ECCCCCCH--HHHHHHHHHHCCCEEEECCH
Q ss_conf 99589875899888899999986-21242678524---------------12578898--88899998625874874374
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ-FGRNAQGEFVY---------------RELTPDNA--PQLNDFIALAQGGTLVLSHP 85 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~-~s~~~~~~fv~---------------~~~~~~~~--~~~~~~l~~a~gGtL~l~ei 85 (145)
..-|+|.|++|+||+++...+-. .-.....|-+. .|...... ..+...+..+.+-.++++--
T Consensus 22 ~~kI~ivG~~~~GKSsLi~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 101 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 101 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 56999999999998999999981958875145656532112333587410011100121123100001232211023332
Q ss_pred HHCCHH-HHHHHHHHHHHCC-HHH-EEEECCCCCH
Q ss_conf 206877-8999999987214-010-0111477687
Q T0567 86 EHLTRE-QQYHLVQLQSQEH-RPF-RLIGIGDTSL 117 (145)
Q Consensus 86 ~~L~~~-~Q~~L~~~l~~~~-~~~-RiI~~s~~~l 117 (145)
+..+-+ ...++..++.... .++ .+|+.+..|+
T Consensus 102 d~~s~~~~~~~l~~~~~~~~~~~~piiiv~nK~Dl 136 (188)
T 1zd9_A 102 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred CCHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 31000000023223333203679828999855635
No 420
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.96 E-value=2.3 Score=21.10 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=19.1
Q ss_pred HHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf 9861479958987589988889999
Q T0567 18 QQLSETDIAVWLYGAPGTGRMTGAR 42 (145)
Q Consensus 18 ~~~a~~~~pvli~Ge~GtGK~~~A~ 42 (145)
-........|++..++||||+.++-
T Consensus 87 ip~il~g~dvii~a~TGsGKTlafl 111 (434)
T 2db3_A 87 IPVISSGRDLMACAQTGSGKTAAFL 111 (434)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 9999859978998579996107579
No 421
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=77.90 E-value=3.4 Score=20.22 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCCCCEEEE-CCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 99999999861479958987-589988889999998621242678524125788
Q T0567 11 NQYRRRLQQLSETDIAVWLY-GAPGTGRMTGARYLHQFGRNAQGEFVYRELTPD 63 (145)
Q Consensus 11 ~~l~~~i~~~a~~~~pvli~-Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~ 63 (145)
++++++.+ ....-+.|. |-.|+||+++|-.+-..-.+.......+||...
T Consensus 8 ~~~~~~~~---~~~~~IaV~SgKGGVGKTTva~NLA~aLA~~G~kVLlID~D~~ 58 (262)
T 2ph1_A 8 EEIKERLG---KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFL 58 (262)
T ss_dssp HHHHHHHT---TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred HHHHHHHH---CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 89998863---6886999966999887999999999999977992675378789
No 422
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=77.89 E-value=1.4 Score=22.32 Aligned_cols=36 Identities=11% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCCCCEECC
Q ss_conf 995898758998888999999-----8621242678524125
Q T0567 24 DIAVWLYGAPGTGRMTGARYL-----HQFGRNAQGEFVYREL 60 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~i-----H~~s~~~~~~fv~~~~ 60 (145)
-.|+||-|.+|+||+.+-+.| ...++. +-.|+.+|.
T Consensus 214 ~PHlLIAG~TGSGKSv~l~siI~SLl~~~sP~-evrliLiDp 254 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS-EARLIMIDP 254 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT-TEEEEEECS
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCHH-HCEEEEECC
T ss_conf 88089984478855199999999999858965-647999546
No 423
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=77.89 E-value=1.2 Score=22.61 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|++|+||+.+.+.+
T Consensus 32 IvvlG~~~vGKTsLi~rl 49 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRF 49 (201)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999998893999999999
No 424
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=77.78 E-value=0.25 Score=26.32 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 898758998888999999862
Q T0567 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~ 47 (145)
.+|+|+.|+||+++-.+|...
T Consensus 30 tvi~G~NGsGKStil~Ai~~~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899889999879999999999
No 425
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=77.78 E-value=1.3 Score=22.55 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|.+|+||+++-+.+.
T Consensus 6 i~vvG~~~~GKTsli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999979999999997
No 426
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=77.74 E-value=1.2 Score=22.76 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=25.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 898758998888999999862124267852412578
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~ 62 (145)
+-++|--|+||+++|-.+...-.+...+...+||-+
T Consensus 3 Iav~gKGGvGKTTia~nlA~~La~~G~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999898822599999999999997899799997799
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=77.70 E-value=1.3 Score=22.56 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=17.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHH
Q ss_conf 9958987589988889999998
Q T0567 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH 45 (145)
..-|+|.|++|+||+.+...+-
T Consensus 23 ~~KI~viG~~~vGKTSLi~r~~ 44 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 8799999989979999999996
No 428
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=77.51 E-value=1.4 Score=22.30 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|++|+||+.+...+-
T Consensus 11 i~vvG~~~vGKSsLi~rl~ 29 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999919899999997
No 429
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=77.37 E-value=1.1 Score=22.81 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.1
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
-|+|.|++|+||+.+...+
T Consensus 25 Ki~viG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEECSTTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999998996999999999
No 430
>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} SCOP: c.37.1.8 PDB: 3cwz_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=77.25 E-value=1.3 Score=22.42 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=17.9
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-|+|.|++|+||+++...+-
T Consensus 7 ~Ki~ivG~~~vGKSsLi~~l~ 27 (170)
T 1yzq_A 7 FKLVFLGEQSVGKTSLITRFM 27 (170)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999949989999999998
No 431
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=77.16 E-value=1.4 Score=22.26 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.3
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|++.|++|+||+.+.+.+-
T Consensus 8 Ki~lvG~~~vGKTsLi~r~~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999999949899999998
No 432
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=77.09 E-value=1.4 Score=22.39 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|.+|+||+++.+.+
T Consensus 13 i~vvG~~~vGKTsLi~~~ 30 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999998991889999999
No 433
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=77.04 E-value=1.5 Score=22.18 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=16.8
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|++.|++|+||+.+-+.+-
T Consensus 13 Ki~vvG~~~vGKSsLi~~~~ 32 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999978899999998
No 434
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.04 E-value=1.5 Score=22.18 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=18.9
Q ss_pred CCC-CEEEECCCCCCHHHHHHHHHH
Q ss_conf 799-589875899888899999986
Q T0567 23 TDI-AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 23 ~~~-pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+.. -|+|.|.+|+||+++-..+-.
T Consensus 10 ~~~~~V~ivG~~n~GKSsLln~l~~ 34 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 8897899999999999999999967
No 435
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=76.95 E-value=0.91 Score=23.31 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.0
Q ss_pred CCCEEEECCCCCCHHHHHHHH
Q ss_conf 995898758998888999999
Q T0567 24 DIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~i 44 (145)
...|++.|++|+||+++-+.+
T Consensus 22 ~~kI~iiG~~~vGKSSLi~rl 42 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHH
T ss_conf 889999999998789999999
No 436
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=76.90 E-value=1.5 Score=22.15 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|+|.|.+|+||+.+...+-
T Consensus 8 i~vvG~~~vGKTsLi~~~~ 26 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999929899999998
No 437
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=76.75 E-value=1.5 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.4
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|++.|.+|+||+++...+-
T Consensus 10 Ki~vvG~~~vGKSsLi~r~~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999969899999997
No 438
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding site, hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=76.72 E-value=3.7 Score=20.03 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=60.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHH------------CCCEEEECCHHHCCHH
Q ss_conf 9958987589988889999998621242678524125788988889999862------------5874874374206877
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALA------------QGGTLVLSHPEHLTRE 91 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l~~a------------~gGtL~l~ei~~L~~~ 91 (145)
..-+.|.|..|+||+.++..|.......+.-.+.+-...+...+..++++.- ..-|.++-+--..|+.
T Consensus 165 GQr~gIfgg~GvGKT~L~~~i~~n~~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~~tv~v~~ts~~p~~ 244 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHH
T ss_conf 54565335777642089999999887504884799610573039999999877548732244332201577564668868
Q ss_pred HHH-------HHHHHHHH-CCHHHEEEECCCCCHHHHH-----------HCCCCCHHHHHHHCCC
Q ss_conf 899-------99999872-1401001114776878998-----------7089765655755442
Q T0567 92 QQY-------HLVQLQSQ-EHRPFRLIGIGDTSLVELA-----------ASNHIIAELYYCFAMT 137 (145)
Q Consensus 92 ~Q~-------~L~~~l~~-~~~~~RiI~~s~~~l~~l~-----------~~~~~~~~L~~~ls~~ 137 (145)
.+. .+++++.. ...++-++..+-....+.. ....+.+++|+.++.+
T Consensus 245 ~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~l~~l 309 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSL 309 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 88999999999999998658982799727778999999999875128984456766688887889
No 439
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=76.68 E-value=1.5 Score=22.10 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.2
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
-|++.|.+|+||+.+...+
T Consensus 8 Ki~vvG~~~vGKTsLi~r~ 26 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIF 26 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999997994999999999
No 440
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=76.56 E-value=1.6 Score=21.99 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCEEEECCCCCCHHHHHHHH-----HHHCCCCCCCCCEECC
Q ss_conf 95898758998888999999-----8621242678524125
Q T0567 25 IAVWLYGAPGTGRMTGARYL-----HQFGRNAQGEFVYREL 60 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~i-----H~~s~~~~~~fv~~~~ 60 (145)
.|+||-|.+|+||+.+-+.| +..++. +-.|+.+|.
T Consensus 168 PHlLIAG~TGSGKSv~l~siI~sLl~~~~P~-ev~liLiDp 207 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPE-DVRFIMIDP 207 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTT-TEEEEEECC
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHH-HCEEEEEEC
T ss_conf 8748871477876199999999999858931-215999706
No 441
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=76.29 E-value=1.6 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.1
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|++.|++|+||+.+...+-
T Consensus 9 Ki~lvG~~~vGKTsli~rl~ 28 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999968899999997
No 442
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* 2a5g_A* 2w83_A*
Probab=76.20 E-value=1.6 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.1
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|+|.|.+|+||+++-..+-
T Consensus 2 kI~ivG~~~vGKSSLi~~l~ 21 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999999968899999996
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8
Probab=76.06 E-value=0.83 Score=23.52 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|++|+||+++.+.+-
T Consensus 11 I~vvG~~~~GKTsli~~l~ 29 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEECCCCC----------
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999948899999997
No 444
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=75.99 E-value=1.6 Score=21.93 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.1
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
-|++.|++|+||+.+.+.+
T Consensus 23 KivlvG~~~vGKTSLi~~~ 41 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQF 41 (191)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999996989999999
No 445
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP binding protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=75.74 E-value=1.7 Score=21.91 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|.+|+||+.+...+
T Consensus 7 i~vvG~~~vGKSsli~~~ 24 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLF 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999996997799999999
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=75.71 E-value=1.6 Score=22.06 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=17.3
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-|++.|++|+||+.+...+-.
T Consensus 30 KI~~vG~~~vGKTsli~r~~~ 50 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899888999999972
No 447
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=75.71 E-value=1.7 Score=21.81 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=19.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99589875899888899999986
Q T0567 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 24 ~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
...|+|.|.+|+||+++-..+-.
T Consensus 7 ~~~V~lvG~~~vGKTsLl~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 78599999999888999999971
No 448
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=75.59 E-value=1.7 Score=21.85 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|++|+||+.+...+-
T Consensus 21 IvlvG~~~vGKTsLi~r~~ 39 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999979968899999997
No 449
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=75.55 E-value=4 Score=19.85 Aligned_cols=95 Identities=17% Similarity=0.091 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHH-------------HHHH-HC
Q ss_conf 999999998614799589875899888899999986212426785241257889888899-------------9986-25
Q T0567 11 NQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLND-------------FIAL-AQ 76 (145)
Q Consensus 11 ~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~-------------~l~~-a~ 76 (145)
.++.+.+.. ....++.|+...|-||+..+...-.... +..+...-...+...+.. ++.. .+
T Consensus 181 ~~~l~~l~~--~~~~~~vitAdRGRGKSaalGla~a~~~---~~i~VTAP~~~~v~~lf~~a~~~i~f~~Pd~ll~~~~~ 255 (671)
T 2zpa_A 181 QQLLKQLMT--MPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQ 255 (671)
T ss_dssp HHHHHHHTT--CCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCC
T ss_pred HHHHHHHHH--CCCCCEEEECCCCCCHHHHHHHHHHHHC---CCEEEECCCHHHHHHHHHHHCCCCEEECHHHHHCCCCC
T ss_conf 999999974--3578489982898859999999998517---98899899989999999970778713385888535787
Q ss_pred CCEEEECCHHHCCHHHHHHHHHHHHHCCHHHEEEECCCCC
Q ss_conf 8748743742068778999999987214010011147768
Q T0567 77 GGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
Q Consensus 77 gGtL~l~ei~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~ 116 (145)
.-.|++||...+|...-.+|+.. . -|++++|+.+
T Consensus 256 ~dlLiVDEAAaIP~p~L~~l~~~----~--~rvv~sTTih 289 (671)
T 2zpa_A 256 ADWLVVDEAAAIPAPLLHQLVSR----F--PRTLLTTTVQ 289 (671)
T ss_dssp CSEEEEETGGGSCHHHHHHHHTT----S--SEEEEEEEBS
T ss_pred CCEEEEECHHCCCHHHHHHHHHH----C--CEEEEEEECC
T ss_conf 78899961412988999999724----7--8699995147
No 450
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12
Probab=75.52 E-value=1.7 Score=21.86 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9589875899888899999986
Q T0567 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.=+-|.|+.|+||+++.+.|.-
T Consensus 42 ei~gllG~NGaGKSTLl~~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999859999999966
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A*
Probab=75.45 E-value=1.6 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHH
Q ss_conf 7995898758998888999999
Q T0567 23 TDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A~~i 44 (145)
...-|++.|.+|+||+++...+
T Consensus 28 ke~KI~lvG~~~vGKTSLi~rl 49 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHH
T ss_conf 7589999999998889999999
No 452
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=75.37 E-value=1.3 Score=22.56 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.5
Q ss_pred CCEEEECCCCCCHHHHHHHH
Q ss_conf 95898758998888999999
Q T0567 25 IAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~i 44 (145)
..|+|.|.+|+||+++...+
T Consensus 22 ~kI~ivG~~nvGKSSLl~~l 41 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 79999999998899999999
No 453
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=74.99 E-value=2.5 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.136 Sum_probs=16.8
Q ss_pred CCCCCEEEECCCCCCHHHHHH
Q ss_conf 479958987589988889999
Q T0567 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~ 42 (145)
..+..|++.+++|+||+.++-
T Consensus 56 l~g~dvlv~apTGsGKTl~~~ 76 (394)
T 1fuu_A 56 IEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp HHTCCEEECCCSSHHHHHHHH
T ss_pred HCCCCEEEECCCCCCHHHHHH
T ss_conf 809978998899961989999
No 454
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=74.85 E-value=1.8 Score=21.71 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=17.1
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|++.|.+|+||+.+...+-
T Consensus 22 KI~viG~~~vGKTSLi~rl~ 41 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919999999997
No 455
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluorescence, membrane, disease mutation, golgi stack, GTP- binding; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* 1gnr_A* 1k8r_A* ...
Probab=74.56 E-value=4.3 Score=19.71 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=36.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCC-CCCCCC--------EE----------CCCC--CCHHHHHHHHHHHCCCEEEECCH
Q ss_conf 898758998888999999862124-267852--------41----------2578--89888899998625874874374
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRN-AQGEFV--------YR----------ELTP--DNAPQLNDFIALAQGGTLVLSHP 85 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~-~~~~fv--------~~----------~~~~--~~~~~~~~~l~~a~gGtL~l~ei 85 (145)
|++.|++|+||+++.+.+-..... ...+-+ .+ +... .....+......+.+-.+++|-.
T Consensus 6 v~viG~~~vGKTsli~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~v~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAIN 85 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEE
T ss_conf 99999699899999999981989976587510111025774230011333233674222300465530134544110121
Q ss_pred HHCCHHHHHHHHH
Q ss_conf 2068778999999
Q T0567 86 EHLTREQQYHLVQ 98 (145)
Q Consensus 86 ~~L~~~~Q~~L~~ 98 (145)
+.-+-+.-.++..
T Consensus 86 ~~~s~~~~~~~~~ 98 (166)
T 2ce2_X 86 NTKSFEDIHQYRE 98 (166)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 6776666788999
No 456
>3lx5_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTP-binding, GTPase, transmembrane, nucleotide-binding; HET: AGO; 1.90A {Streptococcus thermophilus} PDB: 3lx8_A*
Probab=74.49 E-value=1.9 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.8
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|.|.|.+|+||+++...+-
T Consensus 5 kV~lvG~~nvGKStL~n~l~ 24 (272)
T 3lx5_A 5 EIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999999985999999997
No 457
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 2fol_A* 2rhd_A*
Probab=74.44 E-value=1.7 Score=21.78 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
|++.|++|+||+++...+-
T Consensus 11 i~vvG~~~vGKTsli~~l~ 29 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999919899999996
No 458
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=74.36 E-value=1.9 Score=21.60 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=16.6
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|++.|.+|+||+.+...+-
T Consensus 8 KI~v~G~~~vGKSsli~~~~ 27 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999949989899999998
No 459
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.37.1.8
Probab=74.32 E-value=1.7 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.5
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|.|.|.+++||+++-..|-
T Consensus 3 ~I~lvG~~n~GKSSLin~l~ 22 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998999988999999995
No 460
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=74.24 E-value=1.9 Score=21.58 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|.+|+||+.+...+
T Consensus 10 i~lvG~~~vGKTsLi~r~ 27 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999998998999999999
No 461
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 1gua_A* 3cf6_R* 3brw_D*
Probab=74.23 E-value=1.9 Score=21.55 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.1
Q ss_pred CEEEECCCCCCHHHHHHHHHH
Q ss_conf 589875899888899999986
Q T0567 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH~ 46 (145)
-|++.|.+|+||+++...+..
T Consensus 5 KI~viG~~~vGKTsli~~~~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999799599999999961
No 462
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=74.18 E-value=1.9 Score=21.56 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.0
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
=|+|.|++|+||+.+.+.+
T Consensus 27 KI~ivG~~~vGKTsLi~rl 45 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRY 45 (217)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999999996989999999
No 463
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=74.13 E-value=2 Score=21.52 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|.+|+||+.+.+.+
T Consensus 28 IvvvG~~~vGKSSLi~rl 45 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRF 45 (193)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999993899999999
No 464
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=74.09 E-value=4.4 Score=19.65 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 9999999998614799589875899888899999986
Q T0567 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 10 m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
+.++.+.++.+.. +..|++.|.+++||+++-.++-.
T Consensus 149 ~~~l~~~i~~~~~-~~~v~vvG~~NvGKSTLiN~Ll~ 184 (369)
T 3ec1_A 149 MAKVMEAINRYRE-GGDVYVVGCTNVGKSTFINRIIE 184 (369)
T ss_dssp HHHHHHHHHHHHT-TSCEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 0678987654214-76169865898548899998765
No 465
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=74.03 E-value=2 Score=21.53 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|+|.|.+|+||+.+.+.+
T Consensus 16 IvviG~~~vGKTsLi~r~ 33 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRF 33 (223)
T ss_dssp EEEESCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999994999999999
No 466
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.73A {Homo sapiens}
Probab=73.94 E-value=2 Score=21.49 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=16.6
Q ss_pred CCEEEECCCCCCHHHHHH-HHH
Q ss_conf 958987589988889999-998
Q T0567 25 IAVWLYGAPGTGRMTGAR-YLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~-~iH 45 (145)
.=|++.|++|+||+.+.. +++
T Consensus 21 iKivviG~~~vGKTSLi~r~~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899888999999970
No 467
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=73.93 E-value=2 Score=21.49 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.1
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-|.|.|.+|+||+++...+-
T Consensus 8 ~~I~lvG~~~vGKSSLin~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 589999999987999999996
No 468
>1x1r_A RAS-related protein M-RAS; GTP-binding, signaling protein; HET: GDP; 1.30A {Mus musculus} SCOP: c.37.1.8 PDB: 1x1s_A*
Probab=73.87 E-value=2 Score=21.50 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=17.9
Q ss_pred CCCC---EEEECCCCCCHHHHHHHHH
Q ss_conf 7995---8987589988889999998
Q T0567 23 TDIA---VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 23 ~~~p---vli~Ge~GtGK~~~A~~iH 45 (145)
.+.| |++.|++|+||+.+...+.
T Consensus 9 ~~~p~~KivlvG~~~vGKTsll~r~~ 34 (178)
T 1x1r_A 9 ENLPTYKLVVVGDGGVGKSALTIQFF 34 (178)
T ss_dssp -CCCEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 88971799999999909899999997
No 469
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.78 E-value=1.2 Score=22.61 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.7
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
.-|++.|.+|+||+++-..+-
T Consensus 19 ~Ki~~vG~~~vGKSsli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999998899992874
No 470
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=73.73 E-value=2 Score=21.44 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.4
Q ss_pred CEEEECCCCCCHHHHHH-HHH
Q ss_conf 58987589988889999-998
Q T0567 26 AVWLYGAPGTGRMTGAR-YLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~-~iH 45 (145)
-|++.|.+|+||+++.. +++
T Consensus 12 KI~ilG~~~vGKTSli~~~~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899698999999970
No 471
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=73.73 E-value=2 Score=21.44 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=15.9
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
-|++.|++|+||+.+...+
T Consensus 10 Ki~vvG~~~vGKSsLi~~~ 28 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISY 28 (182)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999996997989999999
No 472
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=73.17 E-value=2 Score=21.52 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=15.8
Q ss_pred CEEEECCCCCCHHHHHH-HHH
Q ss_conf 58987589988889999-998
Q T0567 26 AVWLYGAPGTGRMTGAR-YLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~-~iH 45 (145)
-|++.|++|+||+.+.. +++
T Consensus 9 KivvvG~~~vGKTsLi~r~~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899498999999971
No 473
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
Probab=73.15 E-value=2.1 Score=21.41 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 898758998888999999862124267852412
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRE 59 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~ 59 (145)
++++|.-|+||+++|-.+...-.+.......++
T Consensus 5 ~~~~GKGGVGKTT~a~~lA~~lA~~G~rvLlvd 37 (374)
T 3igf_A 5 LTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999889878299999999999997899599991
No 474
>3b6e_A Interferon-induced helicase C domain-containing protein 1; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, structural genomics; 1.60A {Homo sapiens}
Probab=73.01 E-value=1.8 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 47995898758998888999999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~i 44 (145)
.....+++..++|+||+.+|-.+
T Consensus 46 l~g~n~iv~~pTGsGKT~~~~~~ 68 (216)
T 3b6e_A 46 LEGKNIIICLPTGSGKTRVAVYI 68 (216)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHCCCEEEEECCCCCHHHHHHHH
T ss_conf 82899899917998568999999
No 475
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=72.74 E-value=4.7 Score=19.46 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=20.6
Q ss_pred CCCCEEEECCCCCCHHHHH--HHHHHHCCCCCCCC
Q ss_conf 7995898758998888999--99986212426785
Q T0567 23 TDIAVWLYGAPGTGRMTGA--RYLHQFGRNAQGEF 55 (145)
Q Consensus 23 ~~~pvli~Ge~GtGK~~~A--~~iH~~s~~~~~~f 55 (145)
....|++..++||||+.+. -+++.......++.
T Consensus 63 ~~rdviv~apTGsGKTlay~lP~l~~l~~~~~~~~ 97 (412)
T 3fht_A 63 PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 97 (412)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCC
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99868998899966899999999973421168866
No 476
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=72.66 E-value=4.8 Score=19.45 Aligned_cols=61 Identities=21% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHH
Q ss_conf 8989999999999861479958987589988889999998621242678524125788988889999
Q T0567 6 RSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFI 72 (145)
Q Consensus 6 ~S~~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~~~~~~~~~~l 72 (145)
+.++++++.+.++ .-..+++|+|=.|++|..++..+... .+.|++.+--....+..+..-+
T Consensus 17 q~~ai~~l~~~l~---~g~~~~~l~Gl~gsaka~~~A~l~~~---~~~pllvVt~~~~~A~~l~~dL 77 (661)
T 2d7d_A 17 QPKAIEKLVKGIQ---EGKKHQTLLGATGTGKTFTVSNLIKE---VNKPTLVIAHNKTLAGQLYSEF 77 (661)
T ss_dssp HHHHHHHHHHHHH---TTCSEEEEEECTTSCHHHHHHHHHHH---HCCCEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHHH---HCCCEEEECCCHHHHHHHHHHH
T ss_conf 8899999999996---59986898677874999999999998---4999899918999999999999
No 477
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=72.63 E-value=2.1 Score=21.41 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|.+|+||+++...+
T Consensus 29 IvvlG~~~~GKTSLi~~l 46 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRF 46 (201)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999991989999999
No 478
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 1xcg_B 1tx4_B* 1kmq_A* 1dpf_A* ...
Probab=72.48 E-value=2.1 Score=21.38 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 898758998888999999
Q T0567 27 VWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~i 44 (145)
|++.|.+|+||+.+...+
T Consensus 28 vvllG~~~vGKTsLi~r~ 45 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVF 45 (201)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999998998889999999
No 479
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell membrane, GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A*
Probab=72.40 E-value=2.1 Score=21.39 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
..|.|.|.+|+||+++...|-
T Consensus 4 l~I~lvG~~nvGKSTLin~L~ 24 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 889999899997999999996
No 480
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=72.33 E-value=4.8 Score=19.41 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99999999998614799589875899888899999986
Q T0567 9 WINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
Q Consensus 9 ~m~~l~~~i~~~a~~~~pvli~Ge~GtGK~~~A~~iH~ 46 (145)
.+.++.+.++.+.. +..+++.|.+++||+++-..+..
T Consensus 146 g~~~L~~~i~~~~~-~~~v~vvG~~NvGKSTLiN~L~~ 182 (368)
T 3h2y_A 146 GIAELADAIEYYRG-GKDVYVVGCTNVGKSTFINRMIK 182 (368)
T ss_dssp THHHHHHHHHHHHT-TSCEEEEEBTTSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 70888887775027-86389978998877899999866
No 481
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=72.27 E-value=2.3 Score=21.17 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.5
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
-|.|.|.+++||+++...+-
T Consensus 7 kV~lvG~~nvGKSsLin~l~ 26 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999999998999999995
No 482
>1xtq_A GTP-binding protein RHEB; beta saddle, P-loop, signaling protein; HET: GDP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtr_A* 1xts_A*
Probab=72.09 E-value=2.2 Score=21.30 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=16.5
Q ss_pred CEEEECCCCCCHHHHHH-HHHH
Q ss_conf 58987589988889999-9986
Q T0567 26 AVWLYGAPGTGRMTGAR-YLHQ 46 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~-~iH~ 46 (145)
-|++.|++|+||+.+-. +++.
T Consensus 8 KI~viG~~~vGKTsLi~~~~~~ 29 (177)
T 1xtq_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998990989999999719
No 483
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=71.89 E-value=3.3 Score=20.29 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHCCC--CC-EEEECCCCCCHHHHHHHHH
Q ss_conf 89999999999861479--95-8987589988889999998
Q T0567 8 EWINQYRRRLQQLSETD--IA-VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 8 ~~m~~l~~~i~~~a~~~--~p-vli~Ge~GtGK~~~A~~iH 45 (145)
+...++...++++...+ .| |.+.|+.++||+++-.+|=
T Consensus 5 ~~~~~l~~~~~~l~~~~~~~P~IaVvG~~saGKSTLlNaLl 45 (315)
T 1jwy_B 5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 99999999999827677888859999589897999999996
No 484
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=71.70 E-value=4.1 Score=19.81 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8987589988889999998
Q T0567 27 VWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH 45 (145)
+||+|...|||+.+|..+-
T Consensus 2 iLVtGG~rSGKS~~AE~l~ 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 8997898774999999997
No 485
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=71.41 E-value=5.1 Score=19.29 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=23.1
Q ss_pred CCEEEECCHHHCCHHH-HHHHHHHHHHCCHHHEEEECCCC
Q ss_conf 8748743742068778-99999998721401001114776
Q T0567 77 GGTLVLSHPEHLTREQ-QYHLVQLQSQEHRPFRLIGIGDT 115 (145)
Q Consensus 77 gGtL~l~ei~~L~~~~-Q~~L~~~l~~~~~~~RiI~~s~~ 115 (145)
-..+++||.+.+.... ...+..++..-....++++.+..
T Consensus 180 ~~~lViDE~~~~~~~~f~~~~~~i~~~l~~~~q~~~~sat 219 (410)
T 2j0s_A 180 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 219 (410)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 0059999830001167379999999868965548999536
No 486
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=71.36 E-value=3.2 Score=20.36 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 898758998888999999862124267852412578
Q T0567 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP 62 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~~iH~~s~~~~~~fv~~~~~~ 62 (145)
+.|.|--|+||+++|--+-..-.+.......+||-+
T Consensus 5 IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlIDlDp 40 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999899988899999999999998899889995289
No 487
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=71.31 E-value=2.5 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=16.1
Q ss_pred CEEEECCCCCCHHHHHHHH
Q ss_conf 5898758998888999999
Q T0567 26 AVWLYGAPGTGRMTGARYL 44 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i 44 (145)
-|++.|.+|+||+.+...+
T Consensus 17 KIvvvG~~~vGKTsli~~~ 35 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRF 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999998991789999999
No 488
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 1ryf_A* 1ryh_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C 1ds6_A* 2qme_A* 2ov2_A* ...
Probab=71.11 E-value=2.5 Score=20.92 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.8
Q ss_pred CEEEECCCCCCHHHHHH-HHH
Q ss_conf 58987589988889999-998
Q T0567 26 AVWLYGAPGTGRMTGAR-YLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~-~iH 45 (145)
-|++.|.+|+||+.+.. +++
T Consensus 7 KivviG~~~vGKTsli~r~~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899798999999973
No 489
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell membrane, GTP-binding, ION transport; 2.50A {Legionella pneumophila}
Probab=71.01 E-value=2.3 Score=21.18 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=18.0
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 58987589988889999998
Q T0567 26 AVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~iH 45 (145)
.|+|.|.|++||+++-..+-
T Consensus 3 ~vvLvG~pNvGKSTL~N~l~ 22 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998999943999999996
No 490
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=70.91 E-value=2.5 Score=20.91 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=16.7
Q ss_pred CCEEEECCCCCCHHHHHHH-HH
Q ss_conf 9589875899888899999-98
Q T0567 25 IAVWLYGAPGTGRMTGARY-LH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~-iH 45 (145)
.-|++.|.+|+||+.+.+. ++
T Consensus 22 ~Ki~vvG~~~vGKSSLi~r~~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 9999999799889999999971
No 491
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=70.64 E-value=2.7 Score=20.79 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=18.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHH
Q ss_conf 4799589875899888899999
Q T0567 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
Q Consensus 22 ~~~~pvli~Ge~GtGK~~~A~~ 43 (145)
..+.+|++.-|+|+||+.+|..
T Consensus 38 ~~g~nvlv~aPTGsGKT~ia~l 59 (702)
T 2p6r_A 38 FSGKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp TTCSCEEEECSSHHHHHHHHHH
T ss_pred HCCCCEEEECCCCCHHHHHHHH
T ss_conf 8299899982998629999999
No 492
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Probab=70.37 E-value=2.6 Score=20.83 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.2
Q ss_pred CEEEECCCCCCHHHHHH-HHH
Q ss_conf 58987589988889999-998
Q T0567 26 AVWLYGAPGTGRMTGAR-YLH 45 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~-~iH 45 (145)
-|++.|.+|+||+.+.. ++.
T Consensus 22 KI~vvG~~~vGKTsLi~r~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999689888999999974
No 493
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=70.27 E-value=3.2 Score=20.35 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=16.9
Q ss_pred CEEEECCC-CCCHHHHHHHHHHH
Q ss_conf 58987589-98888999999862
Q T0567 26 AVWLYGAP-GTGRMTGARYLHQF 47 (145)
Q Consensus 26 pvli~Ge~-GtGK~~~A~~iH~~ 47 (145)
-++|+|-. |+||++++-.+-..
T Consensus 3 ~~~Itgt~~GVGKTtvt~~La~~ 25 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQA 25 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 39999899996499999999999
No 494
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=70.02 E-value=2.5 Score=20.93 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=16.4
Q ss_pred CCEEEECCCCCCHHHHHHHHH
Q ss_conf 958987589988889999998
Q T0567 25 IAVWLYGAPGTGRMTGARYLH 45 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~iH 45 (145)
--|++.|++|+||+.+...+.
T Consensus 9 ~Kv~viG~~~vGKTsLi~r~~ 29 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 389999939978899999996
No 495
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=69.58 E-value=2.9 Score=20.63 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=45.2
Q ss_pred CEEEECCCCCCHHHHHHHH-HHHCCCCCCCC-------------------CEECCCCCC--HHHHHHHHHHHCCCEEEEC
Q ss_conf 5898758998888999999-86212426785-------------------241257889--8888999986258748743
Q T0567 26 AVWLYGAPGTGRMTGARYL-HQFGRNAQGEF-------------------VYRELTPDN--APQLNDFIALAQGGTLVLS 83 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A~~i-H~~s~~~~~~f-------------------v~~~~~~~~--~~~~~~~l~~a~gGtL~l~ 83 (145)
-|++.|..|+||+.+-..+ +..-.....+. ...|..... ...+...+..+.+-.++++
T Consensus 30 KI~vvG~~~vGKTSLi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~D~~G~e~~~~~~~~~~~~~~~~ilvfd 109 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYD 109 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99999999989999999995398788528854257788888889918999997368616789999998603999999997
Q ss_pred CHHHCCHH-HHHHHHHHHHHCCHHH-EEEECCCCCHHHH
Q ss_conf 74206877-8999999987214010-0111477687899
Q T0567 84 HPEHLTRE-QQYHLVQLQSQEHRPF-RLIGIGDTSLVEL 120 (145)
Q Consensus 84 ei~~L~~~-~Q~~L~~~l~~~~~~~-RiI~~s~~~l~~l 120 (145)
--+.-+.. ...++..+......++ -++..+..|+.+.
T Consensus 110 ~~~~~s~~~~~~~~~~~~~~~~~~ipiiivgnK~Dl~~~ 148 (199)
T 2p5s_A 110 VTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148 (199)
T ss_dssp TTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf 998143677888999999752579727998761103443
No 496
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=69.27 E-value=2.5 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=9.0
Q ss_pred CEEEECCCCCCHHHHH
Q ss_conf 5898758998888999
Q T0567 26 AVWLYGAPGTGRMTGA 41 (145)
Q Consensus 26 pvli~Ge~GtGK~~~A 41 (145)
-+.|+|..||||+.+|
T Consensus 38 ~~v~tG~SGsGKssLa 53 (842)
T 2vf7_A 38 LVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
T ss_conf 8999889889789999
No 497
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 2pz3_A* 2pz2_A* 1as0_A* 1as2_A* 1as3_A* 1gil_A* ...
Probab=68.86 E-value=2.2 Score=21.24 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=20.4
Q ss_pred HCCCCCEEEECCCCCCHHHHHH---HHHHHC
Q ss_conf 1479958987589988889999---998621
Q T0567 21 SETDIAVWLYGAPGTGRMTGAR---YLHQFG 48 (145)
Q Consensus 21 a~~~~pvli~Ge~GtGK~~~A~---~iH~~s 48 (145)
.....-+|+.|..+|||+++-+ .||..+
T Consensus 29 ~~~~~klLLLG~geSGKST~~KQ~rli~~~g 59 (353)
T 1cip_A 29 AAREVKLLLLGAGESGKSTIVKQMKIIHEAG 59 (353)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 4186839887899872999999999990799
No 498
>2kbe_A ATP-dependent RNA helicase DBP5; DBP5P, ATP-binding, cytoplasm, hydrolase, membrane, mRNA transport, nuclear pore complex; NMR {Saccharomyces cerevisiae}
Probab=68.29 E-value=6 Score=18.91 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=47.3
Q ss_pred CCEEEECCCCCCHHHHHHH--HHHHCCCCCCCCCEECCCC-C--------------------------------------
Q ss_conf 9589875899888899999--9862124267852412578-8--------------------------------------
Q T0567 25 IAVWLYGAPGTGRMTGARY--LHQFGRNAQGEFVYRELTP-D-------------------------------------- 63 (145)
Q Consensus 25 ~pvli~Ge~GtGK~~~A~~--iH~~s~~~~~~fv~~~~~~-~-------------------------------------- 63 (145)
..|++..++||||+...-. ++.......++...+=+.. +
T Consensus 62 ~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~lil~ptrel~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 141 (226)
T 2kbe_A 62 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQV 141 (226)
T ss_dssp CCEEEESSTTCHHHHHHHHHHHHHCCCTTCCCCEEEECSSHHHHHHHHHHHHHHSTTCSCCCEEESTTCSCCSSCCCCSE
T ss_pred CCEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEE
T ss_conf 75899865799740378812211344578884289970648987899998754102466414689825643344423409
Q ss_pred ---CHHHHHHHHHHH-----CCCEEEECCHHHCC--HHHHHHHHHHHHHCCHHHEEEE-CCCCC
Q ss_conf ---988889999862-----58748743742068--7789999999872140100111-47768
Q T0567 64 ---NAPQLNDFIALA-----QGGTLVLSHPEHLT--REQQYHLVQLQSQEHRPFRLIG-IGDTS 116 (145)
Q Consensus 64 ---~~~~~~~~l~~a-----~gGtL~l~ei~~L~--~~~Q~~L~~~l~~~~~~~RiI~-~s~~~ 116 (145)
++..+.+++... +=.++++||+|.|= ......+..+++.-..+.++++ |.+.+
T Consensus 142 lV~TPgrl~~~l~~~~~~l~~l~~lVlDEaD~lld~~gf~~~~~~I~~~l~~~~Q~il~SATl~ 205 (226)
T 2kbe_A 142 IVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA 205 (226)
T ss_dssp EEECTTTHHHHHHTTSCCTTSCCEEEEECHHHHHHSTTHHHHHHHHHHHTTTTSCEEEECSCCC
T ss_pred EEECHHHHHHHHHCCCCCHHHEEEEEEEEHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9948799999997698533535687722077877503758999999985899988999931489
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=68.14 E-value=2.9 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHH-HHHH
Q ss_conf 8987589988889999-9986
Q T0567 27 VWLYGAPGTGRMTGAR-YLHQ 46 (145)
Q Consensus 27 vli~Ge~GtGK~~~A~-~iH~ 46 (145)
|++.|.+|+||+.+.. +++.
T Consensus 21 ivviG~~~vGKTsLi~r~~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997989999999609
No 500
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=67.93 E-value=6.1 Score=18.87 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=46.4
Q ss_pred EEEECCCCCCHHH-HHHHHHHHCCCCCCCCCEECCCCCCHHH-------------------HHHHHHH--HCCCEEEECC
Q ss_conf 8987589988889-9999986212426785241257889888-------------------8999986--2587487437
Q T0567 27 VWLYGAPGTGRMT-GARYLHQFGRNAQGEFVYRELTPDNAPQ-------------------LNDFIAL--AQGGTLVLSH 84 (145)
Q Consensus 27 vli~Ge~GtGK~~-~A~~iH~~s~~~~~~fv~~~~~~~~~~~-------------------~~~~l~~--a~gGtL~l~e 84 (145)
-+|.|+..+||++ +-+.++.... +....+.++...++... +.++... .+--.+++||
T Consensus 31 ~lI~GpMfSGKTteLlr~~~~~~~-~~~~vl~ik~~~D~Ry~~~~i~sh~g~~~~~~~~~~~~~~~~~~~~~~dvI~IDE 109 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQF-AKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAIDE 109 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCEEEECCCCEEEEEEECCHHHHHHHHHCCCCEEEEEC
T ss_conf 999905077899999999999998-7995999917012226873388628965788992361566666531578999953
Q ss_pred HHHCCHHHHHHHHHHHHHCCHHHEEEECCCCC
Q ss_conf 42068778999999987214010011147768
Q T0567 85 PEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
Q Consensus 85 i~~L~~~~Q~~L~~~l~~~~~~~RiI~~s~~~ 116 (145)
.+-++.+ +..+++.+...... .+++.-..|
T Consensus 110 aQFf~~~-~~~~~~~~~~~~~~-Viv~GLd~D 139 (214)
T 2j9r_A 110 VQFFDGD-IVEVVQVLANRGYR-VIVAGLDQD 139 (214)
T ss_dssp GGGSCTT-HHHHHHHHHHTTCE-EEEEECSBC
T ss_pred HHCCCHH-HHHHHHHHHHCCCE-EEEEEECCC
T ss_conf 1106477-99999999836974-999986465
Done!