Query T0568 NP_250297.1, Pseudomonas aeruginosa PA01, 158 residues
Match_columns 158
No_of_seqs 27 out of 29
Neff 3.9
Searched_HMMs 11830
Date Tue Jun 1 15:10:42 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0568.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0568.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01835 A2M_N: MG2 domain; I 96.9 0.0022 1.9E-07 37.2 8.1 65 84-157 32-98 (98)
2 PF11141 DUF2914: Protein of u 85.2 0.83 7E-05 22.0 5.6 44 112-158 22-66 (66)
3 PF09087 Cyc-maltodext_N: Cycl 84.5 0.9 7.6E-05 21.7 5.5 74 83-157 10-83 (88)
4 PF01483 P_proprotein: Proprot 46.3 7.2 0.00061 16.4 4.5 22 124-145 46-70 (87)
5 PF05751 FixH: FixH; InterPro 37.2 10 0.00085 15.6 7.1 55 82-149 81-138 (146)
6 PF03921 ICAM_N: Intercellular 32.5 6.8 0.00057 16.5 1.3 35 3-37 1-38 (110)
7 PF00868 Transglut_N: Transglu 30.9 13 0.0011 14.9 6.0 76 70-145 32-116 (118)
8 PF11947 DUF3464: Protein of u 27.6 15 0.0012 14.6 2.3 18 33-50 125-142 (164)
9 PF04393 DUF535: Protein of un 17.0 24 0.002 13.3 5.6 28 130-157 118-146 (288)
10 PF06037 DUF922: Bacterial pro 16.6 25 0.0021 13.2 3.3 82 19-103 13-101 (189)
No 1
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2wii_A 3g6j_C 2win_E 2a74_A 2icf_A 2hr0_A 2a73_A 2ice_D 2qki_D 2i07_A ....
Probab=96.91 E-value=0.0022 Score=37.19 Aligned_cols=65 Identities=23% Similarity=0.311 Sum_probs=51.5
Q ss_pred CCCCEEEEEEECCCCCCCCCCEECCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEEE--CCEEEEEEEEEE
Q ss_conf 88961899986798778889531314668874058964302465326621014876999997--990866565530
Q T0568 84 EGDTPLTLLYLTPGVVTPDGQRHDKFEVVQKLVPGAPTDVMAYEFTEPHEVVKGEWRLMVFQ--GDRLLAEKSFDV 157 (158)
Q Consensus 84 ag~~~vtv~i~HP~i~dp~G~~~~t~e~~~~~~~~~~~~~~~~tF~~p~E~v~G~Wtl~i~~--~d~~LaektF~V 157 (158)
..+.++++.+. ||+|.....+.. ...++.+.+ -++|.-|-+...|.|++.+.. ++...++++|+|
T Consensus 32 ~~~~~v~v~l~-----dp~G~~v~~~~~---~~~~~~G~~-~~~~~lp~~~~~G~y~l~~~~~~~~~~~~~~~F~V 98 (98)
T PF01835_consen 32 PPGTPVTVELE-----DPNGNEVFRWTV---SVTDDFGFF-SGSFPLPDDAPTGTYTLEAYTDDAGGESASTSFQV 98 (98)
T ss_dssp ESSEEEEEEEE------TT--EEEEEEE---ECTTT--TE-EEEEE--SS-----EEEEEEETTECCCEEEEEEEE
T ss_pred CCCCCEEEEEE-----CCCCCEEEEEEE---ECCCCCCEE-EEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEC
T ss_conf 88975899999-----699999999993---001899889-99989999888661799999856899799999989
No 2
>PF11141 DUF2914: Protein of unknown function (DUF2914)
Probab=85.23 E-value=0.83 Score=21.95 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=30.5
Q ss_pred EEEECCCCCCCEEEEEECCCCCCCCCCEEEEEE-ECCEEEEEEEEEEC
Q ss_conf 887405896430246532662101487699999-79908665655309
Q T0568 112 VQKLVPGAPTDVMAYEFTEPHEVVKGEWRLMVF-QGDRLLAEKSFDVR 158 (158)
Q Consensus 112 ~~~~~~~~~~~~~~~tF~~p~E~v~G~Wtl~i~-~~d~~LaektF~V~ 158 (158)
.+.+..+. +.+|+.-.-.....|+|+-.+. .+|.+|+...|.|-
T Consensus 22 ~l~v~g~r---~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~it 66 (66)
T PF11141_consen 22 PLPVRGPR---WRTWSSKRNFPDQKGKWRVEVVDEDGQVLGSLEFRIT 66 (66)
T ss_pred EEECCCCC---EEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEEC
T ss_conf 97147996---3888980568999868899999799989999999989
No 3
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate . ; PDB: 3edj_B 3ede_A 3edf_B 1h3g_B 3edd_A 3edk_B.
Probab=84.46 E-value=0.9 Score=21.73 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCCCCEEEEEEECCCCCCCCCCEECCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEEEE
Q ss_conf 888961899986798778889531314668874058964302465326621014876999997990866565530
Q T0568 83 QEGDTPLTLLYLTPGVVTPDGQRHDKFEVVQKLVPGAPTDVMAYEFTEPHEVVKGEWRLMVFQGDRLLAEKSFDV 157 (158)
Q Consensus 83 ~ag~~~vtv~i~HP~i~dp~G~~~~t~e~~~~~~~~~~~~~~~~tF~~p~E~v~G~Wtl~i~~~d~~LaektF~V 157 (158)
++.+..|-+.++++.|.+-+-....+-..-..+..-+.+||+.-+++-. +.++|+-++.+..+|+......|..
T Consensus 10 GM~np~LQLmvyG~nIa~~~vsi~~~gV~l~~v~~~enpNYLFv~Ld~~-~ak~gt~~i~~~~~~~~~~~~~YeL 83 (88)
T PF09087_consen 10 GMKNPELQLMVYGENIASATVSISYPGVKLKSVVKTENPNYLFVYLDIS-DAKPGTFTITFKQGDKKKLTFPYEL 83 (88)
T ss_dssp -------EEEEE-------EEEE-----EEEEEEE-SSTT-EEEEEE---------EEEEEE------EEEEEEE
T ss_pred CCCCCCEEEEEECCCCCCCEEEECCCCEEEEEEEECCCCCEEEEEEECC-CCCCCEEEEEEECCCCCCEEEEEEE
T ss_conf 7999818999965890207168817991898879558998899996126-6787679999964887618885774
No 4
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence , which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking , . The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases .; GO: 0004289 subtilase activity, 0006508 proteolysis; PDB: 3hjr_A 1p8j_B 1ot5_B 2id4_B 1r64_A.
Probab=46.29 E-value=7.2 Score=16.40 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=17.1
Q ss_pred EEEEEC---CCCCCCCCCEEEEEEE
Q ss_conf 246532---6621014876999997
Q T0568 124 MAYEFT---EPHEVVKGEWRLMVFQ 145 (158)
Q Consensus 124 ~~~tF~---~p~E~v~G~Wtl~i~~ 145 (158)
..++|. +--|..-|+|++.+.-
T Consensus 46 ~~~~f~~~~f~GE~~~G~WtL~V~D 70 (87)
T PF01483_consen 46 INWTFTSVAFWGENANGTWTLKVSD 70 (87)
T ss_dssp ECEEEEESTTTT-B----EEEEEEE
T ss_pred CCEEEEEEEEECCCCCEEEEEEEEE
T ss_conf 0038997512187897589999997
No 5
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG .
Probab=37.20 E-value=10 Score=15.55 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCEECCEEEEEEECCCCCCCEEEEEECCCCCC-CCCCEEEEE--EECCEE
Q ss_conf 88889618999867987788895313146688740589643024653266210-148769999--979908
Q T0568 82 KQEGDTPLTLLYLTPGVVTPDGQRHDKFEVVQKLVPGAPTDVMAYEFTEPHEV-VKGEWRLMV--FQGDRL 149 (158)
Q Consensus 82 k~ag~~~vtv~i~HP~i~dp~G~~~~t~e~~~~~~~~~~~~~~~~tF~~p~E~-v~G~Wtl~i--~~~d~~ 149 (158)
....+..+++..+||--...|- ...+.+.+.+.| .. +.++ .+|.|.+.+ +.+|+.
T Consensus 81 ~~~~~~~v~~~l~rP~~~~~D~--------~l~l~~~~~G~Y---~~--~~~~~~~GrW~l~l~~~~~~~~ 138 (146)
T PF05751_consen 81 KPVSGAKVTLSLYRPTDAKKDF--------TLQLTEDGNGVY---RA--PLELPLEGRWQLRLKWEPGGKV 138 (146)
T ss_pred CCCCCCCEEEEEECCCCCCCCE--------EEEEEECCCCEE---EE--ECCCCCCCCEEEEEEEECCCCE
T ss_conf 8576751799996578767897--------688178899659---99--7168888657999998079966
No 6
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signaling events . The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site . The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex . Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium . ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction . ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen . ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known . VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation . The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains . A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 . VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 . This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3bn3_B 1zxq_A 1t0p_B 1iam_A 1mq8_C 1ic1_A 1z7z_I.
Probab=32.54 E-value=6.8 Score=16.55 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECC---EEEEE
Q ss_conf 024557877875430256632350156076---01112
Q T0568 3 FIRSCISRSVFLLGAGVAVAAQAEVRIDGP---IEYGV 37 (158)
Q Consensus 3 ~~r~~~~~~~~~~~a~~~~~~~a~~~v~~p---veygi 37 (158)
|.|++|.+.+-.+++.++-++.+.++|.-. |+||=
T Consensus 1 ~~~~~L~~ll~Ll~~~~~g~~~f~v~v~P~~~vV~~G~ 38 (110)
T PF03921_consen 1 RACWTLLALLALLGCLGPGEEGFQVSVHPQNAVVPRGG 38 (110)
T ss_dssp ----------------------S-EEEESSCEEEE---
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCEECCCC
T ss_conf 97424889999875678896535788517653684899
No 7
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases () (TGase) are calcium-dependent enzymes that catalyze the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyze the conjugation of polyamines to proteins , . Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilizing the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1g0d_A 1l9m_B 1rle_A 1nuf_A 1l9n_A 1nud_B 1nug_A 1sgx_A 1vjj_B 1kv3_F ....
Probab=30.92 E-value=13 Score=14.94 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=36.8
Q ss_pred CCCCCEEEEEECC-CCCCCEEEEEEECCCCCCCCCCEECCEEEEEEECCCCC--------CCEEEEEECCCCCCCCCCEE
Q ss_conf 8510348898268-88896189998679877888953131466887405896--------43024653266210148769
Q T0568 70 GTKFGMRYQLSGK-QEGDTPLTLLYLTPGVVTPDGQRHDKFEVVQKLVPGAP--------TDVMAYEFTEPHEVVKGEWR 140 (158)
Q Consensus 70 Gi~FGvRf~~~~k-~ag~~~vtv~i~HP~i~dp~G~~~~t~e~~~~~~~~~~--------~~~~~~tF~~p~E~v~G~Wt 140 (158)
|+.|=++...+.+ ......+.+....=+-+.+.-.+.-.+.-......++| .+...-.+..|-....|.|+
T Consensus 32 GQ~F~i~l~f~r~~~~~~d~l~l~~~~G~~Ps~~kGT~~~~~~~~~~~~~~W~a~v~~~~g~~vtl~v~~pa~A~VG~y~ 111 (118)
T PF00868_consen 32 GQPFSITLEFNRPYLPSKDKLSLEFSTGPRPSESKGTLVVVPVSSELDSSEWSAKVVSQSGNSVTLSVTSPADAPVGRYR 111 (118)
T ss_dssp --EEEEEEEESS---TTT-EEEEEEEE-----TTTTSEEEEEECSS---SS-EEEEEEEETTEEEEEEE--TTS----BE
T ss_pred CCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEE
T ss_conf 98499999956867888868999999836898779849999874478999847999934899999999689998567999
Q ss_pred EEEEE
Q ss_conf 99997
Q T0568 141 LMVFQ 145 (158)
Q Consensus 141 l~i~~ 145 (158)
|.+..
T Consensus 112 l~v~~ 116 (118)
T PF00868_consen 112 LSVET 116 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99998
No 8
>PF11947 DUF3464: Protein of unknown function (DUF3464)
Probab=27.64 E-value=15 Score=14.59 Aligned_cols=18 Identities=28% Similarity=0.720 Sum_probs=14.3
Q ss_pred EEEEEEECCCCCCCCCCE
Q ss_conf 011125067766477511
Q T0568 33 IEYGVFESRYQDFQPGER 50 (158)
Q Consensus 33 veygi~e~~~~d~~pg~~ 50 (158)
+.|||+.++-.+..||.-
T Consensus 125 isYGilSaSWD~~~~GSl 142 (164)
T PF11947_consen 125 ISYGILSASWDPERPGSL 142 (164)
T ss_pred HHHEEEECCCCCCCCCCC
T ss_conf 302122014488888771
No 9
>PF04393 DUF535: Protein of unknown function (DUF535); InterPro: IPR007488 Family member Shigella flexneri VirK (Q99QA5 from SWISSPROT) is a virulence protein required for the expression, or correct membrane localisation of IcsA (VirG) on the bacterial cell surface , . This family also includes Pasteurella haemolytica lapB (P32181 from SWISSPROT), which is thought to be membrane-associated.
Probab=17.03 E-value=24 Score=13.29 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=19.4
Q ss_pred CCCCCCCCCEEEEEEECC-EEEEEEEEEE
Q ss_conf 662101487699999799-0866565530
Q T0568 130 EPHEVVKGEWRLMVFQGD-RLLAEKSFDV 157 (158)
Q Consensus 130 ~p~E~v~G~Wtl~i~~~d-~~LaektF~V 157 (158)
.+.-.+.|+|++.+..++ ..|++-||.+
T Consensus 118 ~~~~~kEGe~tL~L~~~~~~~ly~ltF~~ 146 (288)
T PF04393_consen 118 NPGFRKEGELTLSLRDNEGQRLYSLTFSF 146 (288)
T ss_pred CCCCCCCCEEEEEEECCCCCEEEEEEEEE
T ss_conf 88887665079999648873788899998
No 10
>PF06037 DUF922: Bacterial protein of unknown function (DUF922); InterPro: IPR010321 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=16.59 E-value=25 Score=13.23 Aligned_cols=82 Identities=22% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCCCCCCEEEEECCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCCCC-------CEEEE
Q ss_conf 56632350156076011125067766477511455278632446671421685103488982688889-------61899
Q T0568 19 VAVAAQAEVRIDGPIEYGVFESRYQDFQPGERVLTRSEQNIQQTTEVPAKLGTKFGMRYQLSGKQEGD-------TPLTL 91 (158)
Q Consensus 19 ~~~~~~a~~~v~~pveygi~e~~~~d~~pg~~~~~~~~~~i~~T~~VPA~lGi~FGvRf~~~~k~ag~-------~~vtv 91 (158)
.+-+++|.+.+.--+.| |.-+++..+-=.+.+.+.+|.+..-+..||--...|+-++.-. +.++. -+|++
T Consensus 13 ~~~~a~a~~~~~~~~~y--Y~I~G~t~~eL~~~l~~~GP~~~~g~r~~a~T~~~~~w~~~y~-~~~~~C~i~~~~~~l~i 89 (189)
T PF06037_consen 13 LAAAASAEPQVVESVRY--YDISGKTGAELYRSLGERGPVVGTGTRHIAATSWKFTWTRDYE-PQNGRCAITSVKVKLTI 89 (189)
T ss_pred CCCCCCCCCEEEEEEEE--EEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEEE-ECCCCEEEEEEEEEEEE
T ss_conf 66544556415788898--7634999999999999739977788713799999998899988-76994499721337999
Q ss_pred EEECCCCCCCCC
Q ss_conf 986798778889
Q T0568 92 LYLTPGVVTPDG 103 (158)
Q Consensus 92 ~i~HP~i~dp~G 103 (158)
.|+=|...++.+
T Consensus 90 ~~tLP~~~~~~~ 101 (189)
T PF06037_consen 90 TYTLPRWSDRAK 101 (189)
T ss_pred EEECCCCCCCCC
T ss_conf 997888765578
Done!