Query T0569 PtR41O, , 79 residues
Match_columns 79
No_of_seqs 4 out of 6
Neff 1.6
Searched_HMMs 22458
Date Tue Jun 1 15:12:22 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0569.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0569.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i57_A Mucus binding protein; 98.4 7.4E-08 3.3E-12 60.7 1.8 67 3-79 2-76 (185)
2 2kvz_A ISPE; structural genomi 97.1 0.00037 1.6E-08 41.3 4.1 73 1-75 5-80 (85)
3 2kt7_A Putative peptidoglycan 90.1 0.69 3.1E-05 24.2 6.2 61 1-66 4-67 (102)
4 2hh8_A Hypothetical protein YD 27.6 33 0.0015 15.4 3.0 33 31-63 36-69 (149)
5 3ic8_A Uncharacterized GST-lik 22.9 41 0.0018 14.9 4.6 53 12-77 249-301 (310)
6 2ai4_A Hypothetical protein SO 14.8 64 0.0028 13.9 4.8 49 13-63 31-91 (119)
7 2nsm_A Carboxypeptidase N cata 13.9 68 0.003 13.7 6.1 63 9-76 326-396 (439)
8 1wj6_A KIAA0049 protein, RSGI 11.2 63 0.0028 13.9 1.0 15 60-74 54-68 (101)
9 2oyz_A UPF0345 protein VPA0057 8.4 1.1E+02 0.0048 12.7 1.4 16 55-70 56-71 (94)
10 3ikm_A DNA polymerase subunit 7.7 62 0.0027 14.0 -0.2 13 37-49 811-823 (1172)
No 1
>3i57_A Mucus binding protein; beta grAsp fold, cell WALL, peptidoglycan-anchor, protein binding; 1.80A {Lactobacillus reuteri}
Probab=98.38 E-value=7.4e-08 Score=60.69 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=48.6
Q ss_pred CCEEEEEEECCCCCCEECCEEEECCCCCCCEEEEEE------CCCCCEEECCCCCEEECCCCEEEEEEECCCCC--EEEE
Q ss_conf 740789976389984405224630543654125887------47881020367856413884579998308996--4899
Q T0569 3 EDATITYVDDDKGGAQVGDIVTVTGKTDDSTTYTVT------IPDGYEYVGTDGGVVSSDGKTVTITFAADDSD--NVVI 74 (79)
Q Consensus 3 ~~aTityVDDD~~G~~Vgd~~Tv~GktD~~~~~tvt------IPDGYeYVga~g~~vs~dGKt~~~t~~adDsd--nv~i 74 (79)
|.+.|.|||++. |+ +...+++.|++++...+... +|.||++|..+- ....+|..+++. .++|
T Consensus 2 Q~~~I~yvD~~~-~~-~~~~~~~~G~~g~~i~~~~~~~i~~~~~~GY~lv~~~~--------~~~~~~~~~~~~~q~~~V 71 (185)
T 3i57_A 2 QKVHVQYIDGET-DQ-MLRQDDLDGYTDETIPYSTAEGIKKFEGDGYELFKDNF--------PAGEKFDNDDTNDQFYTV 71 (185)
T ss_dssp EEEEEEEEETTT-TE-EEEEEEEEECTTCBCCCCSHHHHHHHHHTTEEEEEECS--------CTTCBCCSCSSCCEEEEE
T ss_pred CEEEEEEEECCC-CE-EEEEEEEECCCCCEEECCHHHHHHHHHCCCCEECCCCC--------CCCCEECCCCCCCEEEEE
T ss_conf 289999998989-95-97677603458998573526644555407979987986--------887477578887565999
Q ss_pred EEECC
Q ss_conf 88439
Q T0569 75 HLKHG 79 (79)
Q Consensus 75 HLKH~ 79 (79)
||||+
T Consensus 72 ~lkh~ 76 (185)
T 3i57_A 72 IFKHH 76 (185)
T ss_dssp EEEEC
T ss_pred EECCC
T ss_conf 96678
No 2
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=97.10 E-value=0.00037 Score=41.32 Aligned_cols=73 Identities=16% Similarity=0.386 Sum_probs=56.6
Q ss_pred CCCCEEEEEEECCCCCCEECCEEEECCCCCCCEEEEEECCCCCEEECCCC---CEEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 98740789976389984405224630543654125887478810203678---5641388457999830899648998
Q T0569 1 MDEDATITYVDDDKGGAQVGDIVTVTGKTDDSTTYTVTIPDGYEYVGTDG---GVVSSDGKTVTITFAADDSDNVVIH 75 (79)
Q Consensus 1 ~~~~aTityVDDD~~G~~Vgd~~Tv~GktD~~~~~tvtIPDGYeYVga~g---~~vs~dGKt~~~t~~adDsdnv~iH 75 (79)
++...||.||| ++|.++.+.++..|...+.-..+.....||+++...| |+.+.+..+++.......-+-.+-|
T Consensus 5 k~~~VtV~YvD--e~Gn~La~~~~~~G~~G~~y~~~~~~I~GY~l~~~~~~~~G~ft~~~~~VtyvY~k~~p~~~~~~ 80 (85)
T 2kvz_A 5 KPNQVTVNYLD--ENNTSIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTESPQTINIIYQKKAPEQALEH 80 (85)
T ss_dssp CCCCEEEEEEC--SSSCEEEEEEEECCCTTCCCCCCCCCGGGEEEEEECSTTSSCCCSSCEEEEEEEEECSCTTTCCC
T ss_pred CCCCEEEEEEC--CCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEECCCCCCCEECCCCEEEEEEEECCCCCCCCCC
T ss_conf 78758999996--99799189867824389983762353398389777887652684797699999950898874213
No 3
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=90.07 E-value=0.69 Score=24.17 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=41.0
Q ss_pred CCCCEEEEEEECCCCCCEECCEEEECCCCCCCEEEEEECCCCCEEECCCC---CEEECCCCEEEEEEEC
Q ss_conf 98740789976389984405224630543654125887478810203678---5641388457999830
Q T0569 1 MDEDATITYVDDDKGGAQVGDIVTVTGKTDDSTTYTVTIPDGYEYVGTDG---GVVSSDGKTVTITFAA 66 (79)
Q Consensus 1 ~~~~aTityVDDD~~G~~Vgd~~Tv~GktD~~~~~tvtIPDGYeYVga~g---~~vs~dGKt~~~t~~a 66 (79)
+....+|.|||. +|.+..+-++..|+.=.+ ..-+| .||+++...+ |+++....+++.....
T Consensus 4 n~~tVtV~YvD~--~Gn~ia~~~~ltG~~Y~t--~~k~I-~GY~l~~~~~n~~Gtft~~~qtVtYvY~K 67 (102)
T 2kt7_A 4 NNFTVKVEYVDA--DGAEIAPSDTLTDYHYVS--TPKDI-PGYKLREIPHNATGNITDTGIIVRYIYDK 67 (102)
T ss_dssp TTCCEEEEEEET--TSSEEEEEEEECSSEEEC--CCCCC-TTEEEEECCTTSEEECCSSSEEEEEEEEE
T ss_pred CCCEEEEEEECC--CCCCCCCCEEECCCCCEE--CCCEE-CCEEEEECCCCCCCEEECCCEEEEEEEEC
T ss_conf 898799999989--989948870014995322--21210-88399873677653282587499999923
No 4
>2hh8_A Hypothetical protein YDFO; structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Escherichia coli} SCOP: d.358.1.1
Probab=27.55 E-value=33 Score=15.38 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=25.9
Q ss_pred CCEEEEEECCCC-CEEECCCCCEEECCCCEEEEE
Q ss_conf 541258874788-102036785641388457999
Q T0569 31 DSTTYTVTIPDG-YEYVGTDGGVVSSDGKTVTIT 63 (79)
Q Consensus 31 ~~~~~tvtIPDG-YeYVga~g~~vs~dGKt~~~t 63 (79)
+...|.+-+++| |.|++.+|.+|++.|+-..+.
T Consensus 36 GV~~Y~y~V~~G~~~y~~~~g~~V~~~~~~~~~~ 69 (149)
T 2hh8_A 36 NVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVS 69 (149)
T ss_dssp CSSEEEEETTTTEEEEECSSSCEEEEECSTTCCC
T ss_pred CCEEEEEECCCCCEEEEECCCCEEEEECCCCCEE
T ss_conf 9626799915897999964998999754766377
No 5
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}
Probab=22.87 E-value=41 Score=14.89 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=39.9
Q ss_pred CCCCCCEECCEEEECCCCCCCEEEEEECCCCCEEECCCCCEEECCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 389984405224630543654125887478810203678564138845799983089964899884
Q T0569 12 DDKGGAQVGDIVTVTGKTDDSTTYTVTIPDGYEYVGTDGGVVSSDGKTVTITFAADDSDNVVIHLK 77 (79)
Q Consensus 12 DD~~G~~Vgd~~Tv~GktD~~~~~tvtIPDGYeYVga~g~~vs~dGKt~~~t~~adDsdnv~iHLK 77 (79)
+|..|-+.|+.|+|. |+.|--....|-.|+.|...+.|.-...+...+.+|.-
T Consensus 249 ~~~~~~~~G~~v~v~-------------p~d~g~~~~~G~lv~~~~~~~~i~r~~~~~g~v~vHfP 301 (310)
T 3ic8_A 249 IDPNGFKAGDKVAIA-------------AVDYGVEAVEGELMFTGREELILRREDNRAGVVHVHFP 301 (310)
T ss_dssp CCTTCCCTTCEEEEE-------------ESSCGGGCEEEEEEEECSSCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCCCCCEEEEE-------------ECCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEEECC
T ss_conf 676668999989995-------------36888799866999844858999975798774899669
No 6
>2ai4_A Hypothetical protein SO1698; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.57A {Shewanella oneidensis mr-1} SCOP: b.6.1.7
Probab=14.83 E-value=64 Score=13.87 Aligned_cols=49 Identities=35% Similarity=0.496 Sum_probs=28.4
Q ss_pred CCCCCEECCEEEECCCCCCCEEEE--EECCCCCEEECCC------C---CE-EECCCCEEEEE
Q ss_conf 899844052246305436541258--8747881020367------8---56-41388457999
Q T0569 13 DKGGAQVGDIVTVTGKTDDSTTYT--VTIPDGYEYVGTD------G---GV-VSSDGKTVTIT 63 (79)
Q Consensus 13 D~~G~~Vgd~~Tv~GktD~~~~~t--vtIPDGYeYVga~------g---~~-vs~dGKt~~~t 63 (79)
+-+|..+--.++|.--.. .+|- -.-+.|++++||- + +| +|+||.-+-+.
T Consensus 31 ~~dg~~c~G~vvVT~~~t--ItY~L~d~T~KGL~F~GagF~TPFD~iIdaVtis~DG~li~L~ 91 (119)
T 2ai4_A 31 DANGQVCQGDITVTQAGT--ITYLLNDQTLKGLKFVGVGFVTPFDGIIDAVTISSDGMLVQLV 91 (119)
T ss_dssp CTTSCEECCCEEECSSEE--EEEEEEECSSSCCEEEEEEESSTTSSSSCEEEECTTSSEEEEE
T ss_pred CCCCCEECCCEEEEECCE--EEEEEECCCCCCCEEEEEEECCCCHHHEEEEEECCCCCEEEEE
T ss_conf 478985067789950760--9999853678761887107078303013469973897089999
No 7
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, hormone processing, peptide modification; HET: NAG; 2.10A {Homo sapiens}
Probab=13.94 E-value=68 Score=13.74 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=33.0
Q ss_pred EEECCCCCCEECCEEEECCC-----CCCCEEEEEECCCCCEEECCCCCEEECCC---CEEEEEEECCCCCEEEEEE
Q ss_conf 97638998440522463054-----36541258874788102036785641388---4579998308996489988
Q T0569 9 YVDDDKGGAQVGDIVTVTGK-----TDDSTTYTVTIPDGYEYVGTDGGVVSSDG---KTVTITFAADDSDNVVIHL 76 (79)
Q Consensus 9 yVDDD~~G~~Vgd~~Tv~Gk-----tD~~~~~tvtIPDGYeYVga~g~~vs~dG---Kt~~~t~~adDsdnv~iHL 76 (79)
.|-|.++..-.+-.+.++|. ||..+.|...+|-| .|. -++|+-| ++.++...++....+.+-|
T Consensus 326 ~V~d~~g~pl~~A~V~v~g~~~~~~Td~~G~y~~~l~~G-~y~----l~vs~~Gy~~~~~~v~v~~~~~~~~~~~L 396 (439)
T 2nsm_A 326 MVLDQNYNNLANAVISVSGINHDVTSGDHGDYFRLLLPG-IYT----VSATAPGYDPETVTVTVGPAEPTLVNFHL 396 (439)
T ss_dssp EEECTTSCBCTTCEEEETTEEEEEECCTTSEEEECCCSE-EEE----EEEECTTEECEEEEEEECSSSCEECCEEC
T ss_pred EEECCCCCCCCCEEEEEECCCCCEEECCCCCEEEEECCE-EEE----EEEEEECCCCEEEEEEECCCCEEEEEEEE
T ss_conf 998999980786699996643562889997589982780-289----99999572477999998589808999997
No 8
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=11.20 E-value=63 Score=13.89 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=6.8
Q ss_pred EEEEEECCCCCEEEE
Q ss_conf 799983089964899
Q T0569 60 VTITFAADDSDNVVI 74 (79)
Q Consensus 60 ~~~t~~adDsdnv~i 74 (79)
..++++++|+|-|+|
T Consensus 54 i~vkY~DedndeVtl 68 (101)
T 1wj6_A 54 IQIKYLDEENEEVSI 68 (101)
T ss_dssp BCCEEECTTSCEECC
T ss_pred EEEEEECCCCCEEEE
T ss_conf 367874478878886
No 9
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomics, PSI-2, protein structure initiative; 1.71A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.82.1.22
Probab=8.36 E-value=1.1e+02 Score=12.67 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=6.6
Q ss_pred CCCCEEEEEEECCCCC
Q ss_conf 3884579998308996
Q T0569 55 SDGKTVTITFAADDSD 70 (79)
Q Consensus 55 ~dGKt~~~t~~adDsd 70 (79)
-.|...-.++.+++|=
T Consensus 56 Lpg~~ew~~~~aG~sF 71 (94)
T 2oyz_A 56 RVGEADWTTYSSGESF 71 (94)
T ss_dssp ETTCSSCEEEETTCEE
T ss_pred CCCCCCCEEECCCCEE
T ss_conf 8998655794699758
No 10
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=7.71 E-value=62 Score=13.95 Aligned_cols=13 Identities=54% Similarity=1.002 Sum_probs=0.0
Q ss_pred EECCCCCEEECCC
Q ss_conf 8747881020367
Q T0569 37 VTIPDGYEYVGTD 49 (79)
Q Consensus 37 vtIPDGYeYVga~ 49 (79)
|..|.||-.||||
T Consensus 811 VqAPpGY~~VGAD 823 (1172)
T 3ikm_A 811 VQAPPGYTLVGAD 823 (1172)
T ss_dssp HCCCTTEEEEEEE
T ss_pred EECCCCCEEECCC
T ss_conf 0079987577776
Done!