Query T0569 PtR41O, , 79 residues
Match_columns 79
No_of_seqs 4 out of 6
Neff 1.6
Searched_HMMs 15564
Date Tue Jun 1 15:13:11 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0569.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0569.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hh8a1 d.358.1.1 (A:7-133) Hy 20.9 31 0.002 14.7 3.0 33 31-63 30-63 (127)
2 g2ai4.1 b.6.1.7 (A:6-116,B:117 17.3 38 0.0024 14.2 7.6 64 9-74 19-94 (119)
3 d1bf5a3 d.93.1.1 (A:569-710) S 9.9 63 0.0041 13.1 1.5 16 3-18 42-57 (142)
4 d2bkfa1 d.15.2.2 (A:1-85) Next 9.7 66 0.0042 13.0 1.8 15 60-74 44-58 (85)
5 d1h8ba_ a.39.1.7 (A:) alpha-Ac 9.2 35 0.0022 14.4 -0.1 10 38-47 53-62 (73)
6 d1wmha_ d.15.2.2 (A:) Protein 8.6 73 0.0047 12.7 2.0 17 2-18 39-55 (83)
7 d2oyza1 b.82.1.22 (A:2-94) Unc 7.6 81 0.0052 12.5 1.4 15 56-70 56-70 (93)
8 d2asfa1 b.45.1.1 (A:11-135) Hy 6.0 92 0.0059 12.2 0.8 21 36-56 62-83 (125)
9 d2hqya1 d.108.1.4 (A:135-298) 5.8 1E+02 0.0066 12.0 2.0 34 43-76 67-101 (164)
10 d1cyga3 b.71.1.1 (A:403-491) C 4.7 1.2E+02 0.0078 11.6 1.8 28 39-67 45-79 (89)
No 1
>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia coli [TaxId: 562]}
Probab=20.90 E-value=31 Score=14.67 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=24.9
Q ss_pred CCEEEEEECCCC-CEEECCCCCEEECCCCEEEEE
Q ss_conf 541258874788-102036785641388457999
Q T0569 31 DSTTYTVTIPDG-YEYVGTDGGVVSSDGKTVTIT 63 (79)
Q Consensus 31 ~~~~~tvtIPDG-YeYVga~g~~vs~dGKt~~~t 63 (79)
+...|.+-+++| |.|++.+|-+|++.|+-+.+.
T Consensus 30 gV~~Y~y~V~~G~~~y~~~dg~~V~~~~~~~~~~ 63 (127)
T d2hh8a1 30 NVSHYIYYLATENVHIVLKNDNTVLLKGLKNIVS 63 (127)
T ss_dssp CSSEEEEETTTTEEEEECSSSCEEEEECSTTCCC
T ss_pred CCEEEEEEECCCCEEEEECCCCEEEEECCCCEEE
T ss_conf 9624799941697999926998998615764178
No 2
>g2ai4.1 b.6.1.7 (A:6-116,B:117-124) Hypothetical protein SO1698 {Shewanella oneidensis [TaxId: 70863]}
Probab=17.31 E-value=38 Score=14.22 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=37.5
Q ss_pred EEECCCCCCEECCEEEECCCCCCCEEEEE--ECCCCCEEECCCC---------CE-EECCCCEEEEEEECCCCCEEEE
Q ss_conf 97638998440522463054365412588--7478810203678---------56-4138845799983089964899
Q T0569 9 YVDDDKGGAQVGDIVTVTGKTDDSTTYTV--TIPDGYEYVGTDG---------GV-VSSDGKTVTITFAADDSDNVVI 74 (79)
Q Consensus 9 yVDDD~~G~~Vgd~~Tv~GktD~~~~~tv--tIPDGYeYVga~g---------~~-vs~dGKt~~~t~~adDsdnv~i 74 (79)
|.--+.+|+.+--.+.|.--+. .+|.. .-|-|+.++||.= ++ ||+||..+-+.=.+...-+.-+
T Consensus 19 F~yt~~~G~~~~G~vvVt~~~T--itY~L~d~T~kgl~F~Ga~f~tpfD~~Idsv~Is~dG~~i~LvD~D~~~G~t~f 94 (119)
T g2ai4.1 19 FIYTDANGQVCQGDITVTQAGT--ITYLLNDQTLKGLKFVGVGFVTPFDGIIDAVTISSDGMLVQLVDLDKTPGTTKF 94 (119)
T ss_dssp EEEECTTSCEECCCEEECSSEE--EEEEEEECSSSCCEEEEEEESSTTSSSSCEEEECTTSSEEEEEECSCCCEEEEE
T ss_pred EEEECCCCCCCCCCEEEECCCC--EEEEECCCCCCCCEEECCEECCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEE
T ss_conf 9997589965389889916863--899980578774289845005885242202998479639999956889880579
No 3
>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.90 E-value=63 Score=13.07 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=11.8
Q ss_pred CCEEEEEEECCCCCCE
Q ss_conf 7407899763899844
Q T0569 3 EDATITYVDDDKGGAQ 18 (79)
Q Consensus 3 ~~aTityVDDD~~G~~ 18 (79)
--+||+||..++|+.+
T Consensus 42 GgitiawV~~~~~~~~ 57 (142)
T d1bf5a3 42 GAITFTWVERSQNGGE 57 (142)
T ss_dssp CCEEEEECCCCSSSSC
T ss_pred CCEEEEEEEECCCCCC
T ss_conf 9669999983488982
No 4
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.69 E-value=66 Score=12.97 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=6.7
Q ss_pred EEEEEECCCCCEEEE
Q ss_conf 799983089964899
Q T0569 60 VTITFAADDSDNVVI 74 (79)
Q Consensus 60 ~~~t~~adDsdnv~i 74 (79)
..+.+.++|++-+.+
T Consensus 44 ~~lkY~Ddd~e~v~l 58 (85)
T d2bkfa1 44 IQIKYLDEENEEVSI 58 (85)
T ss_dssp EEEEEECTTSCEEEE
T ss_pred CEEEEECCCCCEEEE
T ss_conf 138987599998998
No 5
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.24 E-value=35 Score=14.44 Aligned_cols=10 Identities=20% Similarity=0.796 Sum_probs=8.0
Q ss_pred ECCCCCEEEC
Q ss_conf 7478810203
Q T0569 38 TIPDGYEYVG 47 (79)
Q Consensus 38 tIPDGYeYVg 47 (79)
.+|++|+|++
T Consensus 53 ~~~~ayDY~s 62 (73)
T d1h8ba_ 53 SVPGALDYAA 62 (73)
T ss_dssp CCTTCBCHHH
T ss_pred CCCCCCCHHH
T ss_conf 9987314999
No 6
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=73 Score=12.74 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=11.5
Q ss_pred CCCEEEEEEECCCCCCE
Q ss_conf 87407899763899844
Q T0569 2 DEDATITYVDDDKGGAQ 18 (79)
Q Consensus 2 ~~~aTityVDDD~~G~~ 18 (79)
+|..|++++|++.+--+
T Consensus 39 ~q~fT~KWiDeEGDPCT 55 (83)
T d1wmha_ 39 EQLFTMKWIDEEGDPCT 55 (83)
T ss_dssp TCCCEEEEECTTSCEEE
T ss_pred CCCEEEEEECCCCCCEE
T ss_conf 79677887747999506
No 7
>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=7.63 E-value=81 Score=12.49 Aligned_cols=15 Identities=20% Similarity=0.198 Sum_probs=5.9
Q ss_pred CCCEEEEEEECCCCC
Q ss_conf 884579998308996
Q T0569 56 DGKTVTITFAADDSD 70 (79)
Q Consensus 56 dGKt~~~t~~adDsd 70 (79)
.|...-.++.+++|=
T Consensus 56 pg~~ew~~~~~G~sF 70 (93)
T d2oyza1 56 VGEADWTTYSSGESF 70 (93)
T ss_dssp TTCSSCEEEETTCEE
T ss_pred CCCCCCEEECCCCEE
T ss_conf 998654791799859
No 8
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.98 E-value=92 Score=12.21 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=0.0
Q ss_pred EEECCCCCEEECCCC-CEEECC
Q ss_conf 887478810203678-564138
Q T0569 36 TVTIPDGYEYVGTDG-GVVSSD 56 (79)
Q Consensus 36 tvtIPDGYeYVga~g-~~vs~d 56 (79)
.+.++|++.||..+| +.+..|
T Consensus 62 sl~v~d~~~~v~i~G~a~i~~D 83 (125)
T d2asfa1 62 VLSQVDGARWLSLEGRAAVNSD 83 (125)
T ss_dssp EEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEECCCCEEEEEEEEEEECC
T ss_conf 9999779957999999999578
No 9
>d2hqya1 d.108.1.4 (A:135-298) Hypothetical protein BT3689 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=5.78 E-value=1e+02 Score=11.95 Aligned_cols=34 Identities=29% Similarity=0.650 Sum_probs=0.0
Q ss_pred CEEECCCCCEEECCCCEEEEEEE-CCCCCEEEEEE
Q ss_conf 10203678564138845799983-08996489988
Q T0569 43 YEYVGTDGGVVSSDGKTVTITFA-ADDSDNVVIHL 76 (79)
Q Consensus 43 YeYVga~g~~vs~dGKt~~~t~~-adDsdnv~iHL 76 (79)
|+-.|-.||++-.||+.+-.++- .=.++-++||.
T Consensus 67 ~~~L~l~Gg~l~vdg~i~aFtiGe~l~~~t~~iH~ 101 (164)
T d2hqya1 67 FEALGLTGGILHVNGKIVAFTFGMPINHETFGVHV 101 (164)
T ss_dssp HHHHTCEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHCCEEEEEEECCEEEEEEEEEECCCCEEEEEE
T ss_conf 88728468999999999999964242898699998
No 10
>d1cyga3 b.71.1.1 (A:403-491) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.73 E-value=1.2e+02 Score=11.57 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=0.0
Q ss_pred CCCCCEEECCCCC-------EEECCCCEEEEEEECC
Q ss_conf 4788102036785-------6413884579998308
Q T0569 39 IPDGYEYVGTDGG-------VVSSDGKTVTITFAAD 67 (79)
Q Consensus 39 IPDGYeYVga~g~-------~vs~dGKt~~~t~~ad 67 (79)
+|+| .|.-.-+| +|+++|+..++++.+.
T Consensus 45 Lp~G-ty~d~L~g~l~g~~~tV~~nG~i~~~~L~~~ 79 (89)
T d1cyga3 45 LPAG-TYTDQLGGLLDGNTIQVGSNGSVNAFDLGPG 79 (89)
T ss_dssp SCSE-EECCTTTTTTCCCCEEECGGGBBCCEEECTT
T ss_pred CCCC-EEEEEECCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 7894-5980225645883699947994868998999
Done!