Query T0570 YP_001301802.1, Parabacteroides distasonis atcc 8503, 258 residues
Match_columns 258
No_of_seqs 126 out of 2104
Neff 8.6
Searched_HMMs 11830
Date Tue Jun 1 15:16:39 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0570.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0570.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03009 GDPD: Glycerophosphor 100.0 0 0 294.1 23.3 216 30-248 1-255 (255)
2 PF10223 DUF2181: Uncharacteri 97.3 0.0013 1.1E-07 38.3 10.4 178 41-250 11-242 (244)
3 PF00388 PI-PLC-X: Phosphatidy 96.8 0.0015 1.3E-07 37.9 6.7 90 41-147 26-115 (146)
4 PF00290 Trp_syntA: Tryptophan 96.1 0.019 1.6E-06 31.4 8.8 190 21-245 6-227 (259)
5 PF04309 G3P_antiterm: Glycero 89.3 0.37 3.1E-05 23.7 5.7 138 101-249 29-174 (175)
6 PF03060 NPD: 2-nitropropane d 85.5 0.57 4.8E-05 22.7 4.8 38 207-244 175-214 (323)
7 PF10566 Glyco_hydro_97: Glyco 79.7 0.79 6.7E-05 21.8 3.7 43 206-248 354-402 (643)
8 PF00563 EAL: EAL domain; Int 74.4 2.1 0.00018 19.3 12.1 135 105-244 68-231 (236)
9 PF01081 Aldolase: KDPG and KH 70.2 2.6 0.00022 18.7 7.0 81 157-241 88-173 (196)
10 PF09370 TIM-br_sig_trns: TIM- 68.2 2.4 0.00021 18.9 3.9 96 142-244 144-246 (268)
11 PF00218 IGPS: Indole-3-glycer 65.9 3.2 0.00027 18.2 7.4 137 103-244 36-186 (255)
12 PF03851 UvdE: UV-endonuclease 58.7 1.1 9.4E-05 20.9 0.7 30 42-75 46-75 (275)
13 PF00834 Ribul_P_3_epim: Ribul 55.0 5 0.00042 17.0 4.0 35 208-243 156-193 (201)
14 PF05690 ThiG: Thiazole biosyn 49.7 6.1 0.00052 16.5 4.3 189 35-255 14-222 (247)
15 PF12017 Transposase_37: Trans 47.0 6.7 0.00057 16.3 6.3 125 98-239 97-233 (236)
16 PF01959 DHQS: 3-dehydroquinat 46.4 6.9 0.00058 16.2 4.6 119 41-170 12-160 (347)
17 PF04131 NanE: Putative N-acet 38.8 9 0.00076 15.5 8.2 129 102-252 51-185 (192)
18 PF09614 Cas_Csy2: CRISPR-asso 33.3 11 0.00094 15.0 4.1 127 38-174 21-165 (296)
19 PF02638 DUF187: Uncharacteris 30.9 12 0.001 14.7 2.9 30 39-68 64-93 (401)
20 PF00248 Aldo_ket_red: Aldo/ke 29.8 13 0.0011 14.6 9.4 22 40-61 16-37 (284)
21 PF10847 DUF2656: Protein of u 29.2 11 0.00091 15.1 1.9 33 69-101 1-33 (132)
22 PF02896 PEP-utilizers_C: PEP- 27.8 14 0.0012 14.4 4.0 57 198-254 230-290 (293)
23 PF01902 ATP_bind_4: ATP-bindi 27.4 12 0.001 14.7 1.9 12 42-53 12-23 (218)
24 PF03740 PdxJ: Pyridoxal phosp 27.1 14 0.0012 14.3 10.4 41 38-93 20-60 (239)
25 PF01702 TGT: Queuine tRNA-rib 26.2 15 0.0012 14.2 3.9 44 208-251 102-148 (238)
26 PF10210 MRP-S32: Mitochondria 26.0 14 0.0012 14.4 1.9 17 60-76 4-21 (96)
27 PF00224 PK: Pyruvate kinase, 23.7 17 0.0014 14.0 6.1 103 153-255 192-333 (348)
28 PF04481 DUF561: Protein of un 22.3 18 0.0015 13.8 2.4 15 46-60 73-87 (242)
29 PF05673 DUF815: Protein of un 21.2 18 0.0016 13.7 2.4 38 20-62 50-88 (249)
No 1
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 1o1z_A 1t8q_D 1ydy_B 3ch0_A 1v8e_A 1vd6_A 2oog_C 2p76_C 2otd_C 2pz0_B ....
Probab=100.00 E-value=0 Score=294.11 Aligned_cols=216 Identities=32% Similarity=0.493 Sum_probs=169.5
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCC-----CCCCCCCHHHHHHHHCC-------
Q ss_conf 137888788863208999999973899999811973488789704765543-----42323788887676406-------
Q T0570 30 HRGYWKTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQG-----KHIQSCTYDELKDLQLS------- 97 (258)
Q Consensus 30 HRG~~~~~~~pENTl~af~~A~~~G~~~iE~DV~lTkDg~~vv~HD~~l~r-----~~v~~~t~~el~~l~~~------- 97 (258)
||| ++..+||||++||+.|++.|+++||+|||+||||++||+||.+|+| +.|.++||+||++++++
T Consensus 1 HRG--~~~~~pENT~~af~~A~~~g~~~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~i~~~t~~el~~l~~~~~~~~~~ 78 (255)
T PF03009_consen 1 HRG--ASGDFPENTLAAFQKAIAAGADGIELDVQLTKDGVLVVMHDDTLDRTTDGDGPISDLTLAELKKLDIGKGFNNPF 78 (255)
T ss_dssp E-----TTTSSTTSHHHHHHHHHS--SEEEEEEEE-TTS-EEE-SSSSSTTTBSHHCBGGGS-HHHHTTSTC--HHHHCC
T ss_pred CCC--CCCCCCHHHHHHHHHHHHCCCCEEECCCEECCCEEEEEECCCEECCCCCCCCCHHCCCHHHHHHCCCCCCCCCCC
T ss_conf 989--898997008999999998299979404266267079994588143003885324009799996077556876544
Q ss_pred CCC------CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHHHHH------CCCCCEEEEECCHHHH
Q ss_conf 777------89888999999870499189985267776532158--999999999974------1258748984798999
Q T0570 98 NGE------KLPTLEQYLKRAKKLKNIRLIFELKSHDTPERNRD--AARLSVQMVKRM------KLAKRTDYISFNMDAC 163 (258)
Q Consensus 98 ~g~------~iptL~evl~~~~~~~~~~l~ieiK~~~~~~~~~~--~~~~~~~~i~~~------~~~~~viv~Sf~~~~l 163 (258)
.++ +||||+|+++++.+ .++.+.+++|.......... ....+...+... ...++++++||+++.+
T Consensus 79 ~~~~~~~~~~iptL~evl~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~~~~l 157 (255)
T PF03009_consen 79 RGERFPLGFKIPTLEEVLELAKD-PKVNLNIEIKIKPEAKQEELNQIVKDILAFVEEILKVLKKALQRRVIISSFDPEVL 157 (255)
T ss_dssp TTTT-GTGB---BHHHHHHHHHH-TTSEEEEEEEECTCEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEES-HHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH
T ss_conf 56321245678989999985453-69636652577631022344456677877666431000134555537750789999
Q ss_pred HHHHHHHCCCCEEEEECCCC--HH------HHHHCCCEEECC---CHHHHHCCHHHHHHHHHCCCEEEEEECCCH--HHH
Q ss_conf 99999733481898742679--78------898528603034---523320698899999973997999616998--999
Q T0570 164 KEFIRLCPKSEVSYLNGELS--PM------ELKELGFTGLDY---HYKVLQSHPDWVKDCKVLGMTSNVWTVDDP--KLM 230 (258)
Q Consensus 164 ~~~~~~~p~~~~~~l~~~~~--~~------~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~g~~v~~wTvn~~--~~~ 230 (258)
+++++..|.++++++..... .. ....+...+... ........+++++.+|++|+.|++||||++ +++
T Consensus 158 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~wTvn~~~~~~~ 237 (255)
T PF03009_consen 158 KRLRQKAPKLPVGFLIDDGSEPPADSSIKKAIDFAQNPNFLGIISLYDDGLGNPELVQAAHKAGLKVYVWTVNDPDEEEM 237 (255)
T ss_dssp HHHHHHCTTSEEEEEESCHCCCTHH-EEHHHHHHHTTTEEEEBGGGGGHH--BHHHHHHHHHTT-EEEEBSB-SHSHHHH
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf 99997198760899850476323320458999984466224401123201208999999998799799995488299999
Q ss_pred HHHHHCCCCEEEECCHHH
Q ss_conf 999975899887086899
Q T0570 231 EEMIDMGVDFITTDLPEE 248 (258)
Q Consensus 231 ~~~~~~GVdgI~TD~P~~ 248 (258)
+++.++|||||+||+|+.
T Consensus 238 ~~~~~~gvdgIiTD~p~~ 255 (255)
T PF03009_consen 238 KRLIKLGVDGIITDYPDT 255 (255)
T ss_dssp HHHHHGG--EEEES-HHH
T ss_pred HHHHHCCCCEEEECCCCC
T ss_conf 999818999999799898
No 2
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181)
Probab=97.34 E-value=0.0013 Score=38.32 Aligned_cols=178 Identities=19% Similarity=0.209 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHCCCCEEEEEEEECC------CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 32089999999738999998119734------887897047655434232378888767640677789888999999870
Q T0570 41 QNSIRSLERASEIGAYGSEFDVHLTA------DNVLVVYHDNDIQGKHIQSCTYDELKDLQLSNGEKLPTLEQYLKRAKK 114 (258)
Q Consensus 41 ENTl~af~~A~~~G~~~iE~DV~lTk------Dg~~vv~HD~~l~r~~v~~~t~~el~~l~~~~g~~iptL~evl~~~~~ 114 (258)
=|+.+.+.+|+..+..+||.||.+-. +++||..|+... .+++| |+|.|+.+..
T Consensus 11 vNSk~~L~~aL~s~~~miEaDV~l~~~~~~~~~~~PvmahPP~~----~Sdlt-----------------L~e~L~~v~~ 69 (244)
T PF10223_consen 11 VNSKALLEEALSSDIMMIEADVLLGHLNTGAEDDIPVMAHPPAT----DSDLT-----------------LEEWLDEVLP 69 (244)
T ss_pred CCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEECCCCCC----CCCCC-----------------HHHHHHHHHC
T ss_conf 08999999983899887999987521468888998756189998----77565-----------------9999999863
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH-C-CCCCEEEE------ECC---------HHHHHHHHHHHCCCCE--
Q ss_conf 499189985267776532158999999999974-1-25874898------479---------8999999997334818--
Q T0570 115 LKNIRLIFELKSHDTPERNRDAARLSVQMVKRM-K-LAKRTDYI------SFN---------MDACKEFIRLCPKSEV-- 175 (258)
Q Consensus 115 ~~~~~l~ieiK~~~~~~~~~~~~~~~~~~i~~~-~-~~~~viv~------Sf~---------~~~l~~~~~~~p~~~~-- 175 (258)
.+.++-+|+|+.+. +...++.+.+. . ....+.+. .+. .+.+..+.+..|+..+
T Consensus 70 -~~kgVKLDFKs~ea-------v~psl~~L~~~~~~~~~PvWlNADIl~Gp~~~~~~~~Vd~~~Fl~~~~~~fP~atlSl 141 (244)
T PF10223_consen 70 -SNKGVKLDFKSIEA-------VEPSLDLLRNLSDKLNRPVWLNADILPGPGGNTKSPPVDAKRFLATVARLFPDATLSL 141 (244)
T ss_pred -CCCEEEEEECCHHH-------HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf -48379985046788-------6379999997530158983786251579987777876099999999998689839937
Q ss_pred EEEECC--------CCHHHHHH----CCC-----EEECC--CHHHHHCCHHHHHHHHHC-----CCEEEEEEC-C---CH
Q ss_conf 987426--------79788985----286-----03034--523320698899999973-----997999616-9---98
Q T0570 176 SYLNGE--------LSPMELKE----LGF-----TGLDY--HYKVLQSHPDWVKDCKVL-----GMTSNVWTV-D---DP 227 (258)
Q Consensus 176 ~~l~~~--------~~~~~~~~----~~~-----~~~~~--~~~~~~~~~~~v~~~~~~-----g~~v~~wTv-n---~~ 227 (258)
||.+.. .+...... +.. ..+.+ ........ +.+++.. ...+-+|+- | +.
T Consensus 142 GWtt~~~~~~~~~~Yt~~~v~~M~~l~~~~~~l~q~VTFpvrA~~~~~S---~~ql~~LL~~s~r~SLTvW~~~~D~~~~ 218 (244)
T PF10223_consen 142 GWTTKWGPEFLNGGYTWEMVEAMLELCRGIDSLPQPVTFPVRASLAANS---LPQLSWLLDQSPRYSLTVWSSANDPVDV 218 (244)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH---HHHHHHHHCCCCCEEEEEECCCCCCCCH
T ss_conf 7547878657776341999999999987421468854676215666502---7999999715876589997168887668
Q ss_pred HHHHHHHH-CCCCEEEECCHHHHH
Q ss_conf 99999997-589988708689999
Q T0570 228 KLMEEMID-MGVDFITTDLPEETQ 250 (258)
Q Consensus 228 ~~~~~~~~-~GVdgI~TD~P~~~~ 250 (258)
+...+++. .|.+-|+.|-|+.+.
T Consensus 219 ~~l~~lr~~~~~~rVYyDlp~~~~ 242 (244)
T PF10223_consen 219 EDLLQLRRSFGRSRVYYDLPEELH 242 (244)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 899999972683437873886663
No 3
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes . It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins , , . In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0007165 signal transduction, 0007242 intracellular signaling cascade; PDB: 1t6m_A 3ea3_A 3ea1_A 2or2_B 3ea2_A 2ptd_A 5ptd_A 1ptg_A 1gym_A 6ptd_A ....
Probab=96.82 E-value=0.0015 Score=37.95 Aligned_cols=90 Identities=18% Similarity=0.247 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 32089999999738999998119734887897047655434232378888767640677789888999999870499189
Q T0570 41 QNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKHIQSCTYDELKDLQLSNGEKLPTLEQYLKRAKKLKNIRL 120 (258)
Q Consensus 41 ENTl~af~~A~~~G~~~iE~DV~lTkDg~~vv~HD~~l~r~~v~~~t~~el~~l~~~~g~~iptL~evl~~~~~~~~~~l 120 (258)
.+...++..++..|++++|+||+-..|+.+++.|-.+.. ...++.++ |.++-+.+...|+-.+
T Consensus 26 ~~Q~~~i~~QL~~GvR~lDirv~~~~~~~~~v~Hg~~~~----~~~~~~dv-------------L~~i~~fl~~~p~e~V 88 (146)
T PF00388_consen 26 KCQSESITEQLQAGVRYLDIRVWDGEDGELVVYHGHTLT----SGVPFRDV-------------LKEIKDFLFENPSEPV 88 (146)
T ss_dssp -B-SSHHHHHHH----EEEEEEEB-TTTSBEEE----EE-----EEEHHHH-------------HHHHHHHHHHSTTS-E
T ss_pred CCCHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEEE----EEEEHHHH-------------HHHHHHHHHHCCCCCE
T ss_conf 663678999998399759999873899981899604776----56889999-------------9999999987899739
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 985267776532158999999999974
Q T0570 121 IFELKSHDTPERNRDAARLSVQMVKRM 147 (258)
Q Consensus 121 ~ieiK~~~~~~~~~~~~~~~~~~i~~~ 147 (258)
.+.+|.....+....+++.+.+.+.+.
T Consensus 89 Il~l~~~~~~~~~~~~~~~i~~~~g~~ 115 (146)
T PF00388_consen 89 ILSLKHEYSPEQQEKLAEIIEEIFGDR 115 (146)
T ss_dssp EEEEEECSTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999866688778999999999998776
No 4
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan , : L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) , . The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism. ; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1tjr_B 1rd5_B 1ujp_A 1wxj_A 2ekc_B 1geq_A 2dzw_A 1wdw_G 2dzs_B 2e09_B ....
Probab=96.12 E-value=0.019 Score=31.39 Aligned_cols=190 Identities=19% Similarity=0.298 Sum_probs=91.4
Q ss_pred CCCCCEEEEECCCCCCCCCC--CCCHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCC------------
Q ss_conf 66673799813788878886--3208999999973899999811973488789704765543423237------------
Q T0570 21 AKDNTKVIAHRGYWKTEGSA--QNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKHIQSC------------ 86 (258)
Q Consensus 21 ~~~~~~iiaHRG~~~~~~~p--ENTl~af~~A~~~G~~~iE~DV~lTkDg~~vv~HD~~l~r~~v~~~------------ 86 (258)
+++++..|+|= ..++| |-|+..++.-.+.|+|++|+.+=+| |+--|+-.|++-
T Consensus 6 ~~~~~~li~yi----taG~P~~e~~~~~i~~l~~~GaDiiElGiPfS---------DP~ADGpvIq~A~~rAL~~G~~~~ 72 (259)
T PF00290_consen 6 AEGRKALIPYI----TAGYPDLETSLEIIKALDEAGADIIELGIPFS---------DPVADGPVIQRASQRALENGVTLK 72 (259)
T ss_dssp HTTB---EEB-----------HHHHHHHHHHHHH-C-SSEEE----S---------S-TT---HHHHHHHHHHH----HH
T ss_pred HCCCCEEEEEE----ECCCCCHHHHHHHHHHHHHCCCCEEEECCCCC---------CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 58997289898----28899989999999999975999899799888---------877668999999999998699899
Q ss_pred -CHHHHHHHHCCCCCCCC-------------CHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf -88887676406777898-------------8899999987049918998526777653215899999999997412587
Q T0570 87 -TYDELKDLQLSNGEKLP-------------TLEQYLKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKR 152 (258)
Q Consensus 87 -t~~el~~l~~~~g~~ip-------------tL~evl~~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (258)
.++-+++++- ...+| -++++++.+++-.--++.+ ++.|. +..+.+.+..+++++. .
T Consensus 73 ~~~~~~~~ir~--~~~~pivlmtY~N~i~~~G~e~F~~~~~~aGv~GvIi----pDLP~---EE~~~~~~~~~~~gl~-~ 142 (259)
T PF00290_consen 73 KVFEILKEIRK--DPDVPIVLMTYYNPIFQYGVERFLQDAKEAGVDGVII----PDLPP---EEAEELREACRKHGLD-L 142 (259)
T ss_dssp HHHHHHHHHHH--CSSS-EEEEE-HHHHHHS--HHHHHHHHH----EEEE----TTSBG---GGHHHHHHHHHHTT-E-E
T ss_pred HHHHHHHHHHC--CCCCCEEEEECCCHHHHCCHHHHHHHHHHCCCCEEEE----CCCCH---HHHHHHHHHHHHCCCC-E
T ss_conf 99999999744--7998889995340887609999999999849986996----89998---8899999999986996-8
Q ss_pred EEEEEC--CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCEEECCCHHHHHCCHHHHHHHHHC-CCEEEE-EECCCHH
Q ss_conf 489847--989999999973348189874267978898528603034523320698899999973-997999-6169989
Q T0570 153 TDYISF--NMDACKEFIRLCPKSEVSYLNGELSPMELKELGFTGLDYHYKVLQSHPDWVKDCKVL-GMTSNV-WTVDDPK 228 (258)
Q Consensus 153 viv~Sf--~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~v~~-wTvn~~~ 228 (258)
+.+.|. ..+-++++.+..+.. .|.... .+..|..-.. .....++++++++. .+++.+ +.|.+++
T Consensus 143 I~lvaPtT~~~Ri~~i~~~a~gF--iY~vs~--------~GvTG~~~~~--~~~~~~~v~~ir~~t~~Pv~vGFGIs~~e 210 (259)
T PF00290_consen 143 IFLVAPTTPDERIKKIAKHASGF--IYLVSR--------MGVTGARSEL--PEELKEYVERIREYTDLPVAVGFGISNPE 210 (259)
T ss_dssp BEEE-TTS-HHHHHHHHHH-SS---EEE-S----------------SSS--HHHHHHHHHHHHHTTSS-EE------SHH
T ss_pred EEEECCCCCHHHHHHHHHHCCCC--EEEEEC--------CCCCCCCCCC--HHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 99979999999999999768997--898505--------7887744345--47899999999860699828866769999
Q ss_pred HHHHHHHCCCCEEEECC
Q ss_conf 99999975899887086
Q T0570 229 LMEEMIDMGVDFITTDL 245 (258)
Q Consensus 229 ~~~~~~~~GVdgI~TD~ 245 (258)
+.+++.+.++||++.--
T Consensus 211 ~v~~~~~~~aDGvIVGS 227 (259)
T PF00290_consen 211 QVAKLAEAGADGVIVGS 227 (259)
T ss_dssp HHHHHHH-T----EE--
T ss_pred HHHHHHHCCCCEEEECH
T ss_conf 99999864899999887
No 5
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus subtilis, glycerol-3-P activates the antiterminator GlpP . In Bacillus subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0030528 transcription regulator activity, 0009607 response to biotic stimulus, 0045449 regulation of transcription; PDB: 1vkf_A.
Probab=89.34 E-value=0.37 Score=23.74 Aligned_cols=138 Identities=15% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCCHHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH-CCCCEEEE
Q ss_conf 898889999998704991-8998526777653215899999999997412587489847989999999973-34818987
Q T0570 101 KLPTLEQYLKRAKKLKNI-RLIFELKSHDTPERNRDAARLSVQMVKRMKLAKRTDYISFNMDACKEFIRLC-PKSEVSYL 178 (258)
Q Consensus 101 ~iptL~evl~~~~~~~~~-~l~ieiK~~~~~~~~~~~~~~~~~~i~~~~~~~~viv~Sf~~~~l~~~~~~~-p~~~~~~l 178 (258)
.|..|.++.+.+++.... .+.+|+= .+-... +..++.+++..-.+ =+.|-....+++.++.. ..+.+.|+
T Consensus 29 ~I~~l~~~v~~~k~~gK~v~vHiDLi--~GL~~d----~~a~~fl~~~~~~d--GIISTk~~~i~~Ak~~Gl~tIqR~Fl 100 (175)
T PF04309_consen 29 DIGNLKSIVEKIKKAGKKVFVHIDLI--EGLSSD----EIAVEFLKKYTKPD--GIISTKSNLIKRAKKLGLLTIQRVFL 100 (175)
T ss_dssp ETTTHHHHHHHHHH---EEEEBGGGE--E----------HHHHHHHH---------EES-HHHHHHHHH-----EEEEE-
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEEC--CCCCCC----HHHHHHHHHHCCCC--EEEECCHHHHHHHHHCCCEEEEEEEE
T ss_conf 38889999999998699899984204--677888----79999999863766--16754789999999789907965411
Q ss_pred ECCCCHHH----HHHCCCEEECCCHHHHHCCHHHHHHHHHC-CCEEEEE-ECCCHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 42679788----98528603034523320698899999973-9979996-169989999999758998870868999
Q T0570 179 NGELSPME----LKELGFTGLDYHYKVLQSHPDWVKDCKVL-GMTSNVW-TVDDPKLMEEMIDMGVDFITTDLPEET 249 (258)
Q Consensus 179 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~v~~w-Tvn~~~~~~~~~~~GVdgI~TD~P~~~ 249 (258)
....+-.. .+..+.+.+..-+- .-|++++++++. +.++.+- -++++++...+++.|+.+|.|-.+++.
T Consensus 101 iDS~sl~~~~~~i~~~~PD~vEiLPG---~~p~iI~~i~~~~~~PiIAGGLI~~~edv~~al~aGA~aVSTS~~~LW 174 (175)
T PF04309_consen 101 IDSLSLENGIKQIEKSKPDAVEILPG---IMPKIIKEIKKETGIPIIAGGLIRTKEDVIEALKAGAIAVSTSNKELW 174 (175)
T ss_dssp -SHHHHH---HHHHH----EEEEE------HHHHHCT----E---EEE-----SHHHHHHHCTTSSEE-EE--HHHH
T ss_pred EEHHHHHHHHHHHHHCCCCEEEECCH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 31778999999985469999998876---789999999999888831211106799999999747532356785531
No 6
>PF03060 NPD: 2-nitropropane dioxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor . This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport; PDB: 2gjn_A 2gjl_A 2z6i_A 2z6j_B 3bo9_A 3bw2_A 3bw4_A 3bw3_A.
Probab=85.52 E-value=0.57 Score=22.65 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHHHH-CCCEEEEE-ECCCHHHHHHHHHCCCCEEEEC
Q ss_conf 89999997-39979996-1699899999997589988708
Q T0570 207 DWVKDCKV-LGMTSNVW-TVDDPKLMEEMIDMGVDFITTD 244 (258)
Q Consensus 207 ~~v~~~~~-~g~~v~~w-Tvn~~~~~~~~~~~GVdgI~TD 244 (258)
.++..+.+ ..++|.+. -+.+...+..++.+|++||...
T Consensus 175 ~L~~~v~~~~~ipviaAGGI~~g~~iaaal~lGA~gV~~G 214 (323)
T PF03060_consen 175 SLLPQVRDAVDIPVIAAGGIGDGRGIAAALALGADGVQMG 214 (323)
T ss_dssp HHHHHHHHH-SS-EEE---------HHHHHH----EEEE-
T ss_pred HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 8999999981995899828889899999997199999988
No 7
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; PDB: 2jkp_A 2zq0_A 2jke_B 2d73_B 2jka_B.
Probab=79.73 E-value=0.79 Score=21.79 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCEEEEEECC------CHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 88999999739979996169------98999999975899887086899
Q T0570 206 PDWVKDCKVLGMTSNVWTVD------DPKLMEEMIDMGVDFITTDLPEE 248 (258)
Q Consensus 206 ~~~v~~~~~~g~~v~~wTvn------~~~~~~~~~~~GVdgI~TD~P~~ 248 (258)
+++++-+++.|..++.|.-- -.+.+.++.++||+||=+|+.+.
T Consensus 354 ~elv~Ya~~KgV~i~lw~~~~~~~~~~d~~~~~~~~~GV~GvKvdF~~~ 402 (643)
T PF10566_consen 354 KELVAYAKSKGVGIILWYNWNNLERQMDKAFAWYQKWGVKGVKVDFFDR 402 (643)
T ss_dssp HHHHHHHHH---EEEEETBHHHHHHHHHHHHHHHHH----EEEE-----
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999999737976999952188899999999999980998896786477
No 8
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function . The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with PAS IPR000014 from INTERPRO and DUF9 IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 2r6o_A 3gfx_A 3gfz_A 3gfy_B 3gg0_B 3gg1_B 2bas_A 2w27_B.
Probab=74.42 E-value=2.1 Score=19.31 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=74.2
Q ss_pred HHHHHHHHHH-------CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEE-ECC-----H---HHHHHHH
Q ss_conf 8999999870-------4991899852677765321589999999999741258-74898-479-----8---9999999
Q T0570 105 LEQYLKRAKK-------LKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAK-RTDYI-SFN-----M---DACKEFI 167 (258)
Q Consensus 105 L~evl~~~~~-------~~~~~l~ieiK~~~~~~~~~~~~~~~~~~i~~~~~~~-~viv~-Sf~-----~---~~l~~~~ 167 (258)
+..+++.+.. .++..+.+.+-+.... .....+.+.+.+ ..+... ++++. +-+ . +.+..++
T Consensus 68 l~~~~~~~~~~~~~~~~~~~~~l~ini~~~~l~--~~~f~~~l~~~l-~~~~~~~~lvlei~e~~~~~~~~~~~~l~~l~ 144 (236)
T PF00563_consen 68 LRKALEQLARWRENKGLPKDLKLFINISPSSLL--DDEFIDWLSNLL-QSGLPPQRLVLEISENDLNDDPRLQEFLRRLR 144 (236)
T ss_dssp HHHHHHHHCCCHH-----TT-EEEEEE-HHCCC--CCCHHHHHHHHH-H----GGGEEEEEEGCCHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHC--CHHHHHHHHHHH-HCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 999999999998630468872799995789960--537889999986-30478541599996042311167999999997
Q ss_pred HHHCCCCEEE---EECCCCHHHHHHCCCEEECCCHHHHH---------CCHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Q ss_conf 9733481898---74267978898528603034523320---------69889999997399799961699899999997
Q T0570 168 RLCPKSEVSY---LNGELSPMELKELGFTGLDYHYKVLQ---------SHPDWVKDCKVLGMTSNVWTVDDPKLMEEMID 235 (258)
Q Consensus 168 ~~~p~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~g~~v~~wTvn~~~~~~~~~~ 235 (258)
+. ++.++. ..+..+...+..+....+.++..... .-+.++..++..|..+.+..|++++++..+..
T Consensus 145 ~~--G~~l~id~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~~~~ 222 (236)
T PF00563_consen 145 SL--GFRLAIDDFGSGSNSFEHLQELPPDYIKLDRSLFRDISDPEAQALLKALINLAKSLGIKVIAEGVENEEQLEQLKR 222 (236)
T ss_dssp H-----EEEEEEE---SB-HHHHHHC--SEEEEEHHHHTTTTSHCHHHHHHHHHHHHHH---EEEEEEE-SHHHHHHHHH
T ss_pred HC--CCEEEEECCCCCCCCHHHHHCCCCCEEEECHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf 24--9789994676777630122002461387787776356520447999999999726677179998187999999998
Q ss_pred CCCCEEEEC
Q ss_conf 589988708
Q T0570 236 MGVDFITTD 244 (258)
Q Consensus 236 ~GVdgI~TD 244 (258)
+|++.+.=+
T Consensus 223 lg~~~~QG~ 231 (236)
T PF00563_consen 223 LGVDYVQGY 231 (236)
T ss_dssp ----EEE-E
T ss_pred CCCCEEECC
T ss_conf 599999878
No 9
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1fq0_B 1eun_C 1fwr_B 1eua_C 2c0a_C 1wbh_C 1wau_A 1mxs_A 2v82_A 2v81_A ....
Probab=70.24 E-value=2.6 Score=18.72 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=34.1
Q ss_pred ECCHHHHHHHHHHHCCCCEEEEECCCCHHHHH---HCCCEEECCCHHHHHCCHHHHHHHHHC--CCEEEEEECCCHHHHH
Q ss_conf 47989999999973348189874267978898---528603034523320698899999973--9979996169989999
Q T0570 157 SFNMDACKEFIRLCPKSEVSYLNGELSPMELK---ELGFTGLDYHYKVLQSHPDWVKDCKVL--GMTSNVWTVDDPKLME 231 (258)
Q Consensus 157 Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~~v~~wTvn~~~~~~ 231 (258)
+++++.++.+++.. +-++-+..++.+.. +.++..+-+.+....-.+.+++.++.- +++++.=---+++.+.
T Consensus 88 ~~~~~v~~~a~~~~----i~~iPG~~TptEi~~A~~~G~~~vKlFPA~~~GG~~~ikal~~p~p~~~~~ptGGV~~~n~~ 163 (196)
T PF01081_consen 88 GFNPEVIEYAREYG----IPYIPGVMTPTEIVQAWEAGADIVKLFPASALGGPSYIKALKGPFPDVPFMPTGGVSPDNLP 163 (196)
T ss_dssp S--HHHHHHHHHTT----SEEE----SHHHHHHHHH----EEEETTTTTT---HHHHHHHCCSTT-EEEE-----TTTHH
T ss_pred CCCHHHHHHHHHCC----CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHH
T ss_conf 99999999999849----97627889999999999879998997766111849999997555899808974899988999
Q ss_pred HHHHCCCCEE
Q ss_conf 9997589988
Q T0570 232 EMIDMGVDFI 241 (258)
Q Consensus 232 ~~~~~GVdgI 241 (258)
.+++.|+..+
T Consensus 164 ~~l~aG~~~v 173 (196)
T PF01081_consen 164 EYLAAGAVAV 173 (196)
T ss_dssp HHHCSTTBSB
T ss_pred HHHHCCCEEE
T ss_conf 9996899699
No 10
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; PDB: 2p10_F.
Probab=68.24 E-value=2.4 Score=18.88 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=45.8
Q ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCE-EECCCHHHHHCCHHHHHHHHHCCCE--
Q ss_conf 9999741258748984798999999997334818987426797889852860-3034523320698899999973997--
Q T0570 142 QMVKRMKLAKRTDYISFNMDACKEFIRLCPKSEVSYLNGELSPMELKELGFT-GLDYHYKVLQSHPDWVKDCKVLGMT-- 218 (258)
Q Consensus 142 ~~i~~~~~~~~viv~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~-- 218 (258)
...++.++. .+-..|+++..+.+.+...++-+.. .+...- ...++. +.... +......++.+.+++-+..
T Consensus 144 r~A~~~dl~--T~~yvf~~e~a~~M~~AGaDiIv~h-~GlT~g---G~iG~~~a~sle-~a~~~~~~i~~aa~~vn~diI 216 (268)
T PF09370_consen 144 RKAREKDLF--TIAYVFNEEQARAMAEAGADIIVAH-MGLTTG---GSIGAKTALSLE-DAAERIQEIADAARAVNPDII 216 (268)
T ss_dssp HHHHHTT-------EE-SHHHHHHHHH----EEEEE--------------------HH-HHHHHHHHHHHHHHCC-TT-E
T ss_pred HHHHHCCCC--CEEEECCHHHHHHHHHCCCCEEEEC-CCCCCC---CCCCCCCCCCHH-HHHHHHHHHHHHHHHHCCCEE
T ss_conf 999987983--3256468999999997299889976-676777---766756677899-999999999999997498828
Q ss_pred EEEE--ECCCHHHHHHHHHC--CCCEEEEC
Q ss_conf 9996--16998999999975--89988708
Q T0570 219 SNVW--TVDDPKLMEEMIDM--GVDFITTD 244 (258)
Q Consensus 219 v~~w--Tvn~~~~~~~~~~~--GVdgI~TD 244 (258)
+.++ ++.+|++++.+++. |++|.+..
T Consensus 217 vLchGGPi~~P~da~~vl~~t~~~~Gf~ga 246 (268)
T PF09370_consen 217 VLCHGGPIATPEDAQYVLDNTKGCHGFIGA 246 (268)
T ss_dssp EEEE-----SHHHHHHHHHH----------
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCEEECC
T ss_conf 996078889989999999659877677533
No 11
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand . ; PDB: 1pii_A 1jcm_P 1jul_A 2c3z_A 1lbf_A 1a53_A 1igs_A 1juk_A 1lbl_A 1vc4_B ....
Probab=65.86 E-value=3.2 Score=18.19 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCC----CCCHHHHHHHHHHHHHHCCCCCEEEE---EC--CHHHHHHHHHHHCCC
Q ss_conf 8889999998704991899852677765----32158999999999974125874898---47--989999999973348
Q T0570 103 PTLEQYLKRAKKLKNIRLIFELKSHDTP----ERNRDAARLSVQMVKRMKLAKRTDYI---SF--NMDACKEFIRLCPKS 173 (258)
Q Consensus 103 ptL~evl~~~~~~~~~~l~ieiK~~~~~----~~~~~~~~~~~~~i~~~~~~~~viv~---Sf--~~~~l~~~~~~~p~~ 173 (258)
+.|.+.+... .+...+.-|+|..... ....+. ..++..+.+.+...-.+.. .| +.+.+..+++.. ++
T Consensus 36 ~~f~~al~~~--~~~~~vIaEiKraSPS~G~i~~~~d~-~~~a~~y~~~GA~aISVlTd~~~F~Gs~~dL~~v~~~~-~~ 111 (255)
T PF00218_consen 36 RSFREALKNR--EGKLSVIAEIKRASPSKGIIREDFDP-AEIARAYEEAGAAAISVLTDPKYFGGSLEDLRAVRQAV-SL 111 (255)
T ss_dssp THHHHHHCHH--TTS-EEEEEE-SB-ST----BST--H-HHHHHHHCTT--SEEEEE--SSCT---CHHHHHHHHH--SS
T ss_pred CCHHHHHHHH--CCCCCEEEEECCCCCCCCCCCCCCCH-HHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHC-CC
T ss_conf 8999999874--77870785546899888977898889-99999997479409999758787898899999999865-78
Q ss_pred CEEEEECCCCHH---HHHHCCCEEECCCHHHHHCC--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEC
Q ss_conf 189874267978---89852860303452332069--889999997399799961699899999997589988708
Q T0570 174 EVSYLNGELSPM---ELKELGFTGLDYHYKVLQSH--PDWVKDCKVLGMTSNVWTVDDPKLMEEMIDMGVDFITTD 244 (258)
Q Consensus 174 ~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~GVdgI~TD 244 (258)
|+..=.....+. +.+.++++++-.-...+... +++++.++..|+.+.+ -|.+.+++.+..+.|.+-|--|
T Consensus 112 PvLrKDFIid~~QI~eA~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LV-EVh~~~El~~al~~ga~iIGIN 186 (255)
T PF00218_consen 112 PVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDEQLKELLELAHSLGLEALV-EVHNEEELERALDAGAKIIGIN 186 (255)
T ss_dssp -EEEES---SHHHHHHHHHTT-SEEEEECCCS-HHHHHHHHHHHHTTT-EEEE-E-SSHHHHHHHHH---SEE-EE
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHCCCCEEE-EECCHHHHHHHHHCCCCEEEEE
T ss_conf 76241220869999999985999886048648999999999999984992699-8599999999996799889987
No 12
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts . The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism .; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair; PDB: 3bzj_A 3bzg_A 3c0q_A 3c0s_A 3c0l_A.
Probab=58.70 E-value=1.1 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHCCCCEEEEEEEECCCCEEEEECC
Q ss_conf 2089999999738999998119734887897047
Q T0570 42 NSIRSLERASEIGAYGSEFDVHLTADNVLVVYHD 75 (258)
Q Consensus 42 NTl~af~~A~~~G~~~iE~DV~lTkDg~~vv~HD 75 (258)
|.+..++-..+.|..++ |+|+|=.|...|.
T Consensus 46 ~l~~~l~~n~~~~I~~~----RisS~l~P~ashp 75 (275)
T PF03851_consen 46 DLLRILRYNEAHGIRFY----RISSDLFPFASHP 75 (275)
T ss_dssp HHHHHHHHHHH----EE----E---TSSTTTTST
T ss_pred HHHHHHHHHHHCCCCEE----ECCCCCCCCCCCC
T ss_conf 99999999998699779----6473647888885
No 13
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 1h1y_B 1h1z_A 1tqx_A 3cu2_B 3ctl_C 3ct7_E 2fli_B 1tqj_B 1rpx_A.
Probab=55.03 E-value=5 Score=17.04 Aligned_cols=35 Identities=9% Similarity=0.251 Sum_probs=22.2
Q ss_pred HHHHHHHCCCEEEEEE---CCCHHHHHHHHHCCCCEEEE
Q ss_conf 9999997399799961---69989999999758998870
Q T0570 208 WVKDCKVLGMTSNVWT---VDDPKLMEEMIDMGVDFITT 243 (258)
Q Consensus 208 ~v~~~~~~g~~v~~wT---vn~~~~~~~~~~~GVdgI~T 243 (258)
+.+...++|..+..|. ||. +.+..+.+.|+|.+..
T Consensus 156 l~~~~~~~~~~~~I~VDGGI~~-~ti~~~~~aGad~~V~ 193 (201)
T PF00834_consen 156 LRKLIPENNLDIEIEVDGGINE-ETIKQLVEAGADIFVA 193 (201)
T ss_dssp HHHHHHHGGGGSEEEEE---ST-TTHHHHHH----EEEE
T ss_pred HHHHHHHCCCCEEEEEECCCCH-HHHHHHHHCCCCEEEE
T ss_conf 9999883599738999898789-9999999869999998
No 14
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway .; GO: 0009228 thiamin biosynthetic process; PDB: 2htm_B 2yzr_C 1wv2_B 1tyg_C 1xm3_C.
Probab=49.66 E-value=6.1 Score=16.53 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=90.1
Q ss_pred CCCCCCCCCHHHHHHHHHC-CCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHH--HC-CCCCCCCCHHHHHH
Q ss_conf 8788863208999999973-89999981197348878970476554342323788887676--40-67778988899999
Q T0570 35 KTEGSAQNSIRSLERASEI-GAYGSEFDVHLTADNVLVVYHDNDIQGKHIQSCTYDELKDL--QL-SNGEKLPTLEQYLK 110 (258)
Q Consensus 35 ~~~~~pENTl~af~~A~~~-G~~~iE~DV~lTkDg~~vv~HD~~l~r~~v~~~t~~el~~l--~~-~~g~~iptL~evl~ 110 (258)
|++.|| +..-+..|++. |++.+-+-+++-.-+.. -.++.-+ +.|+.. ++ .+.-..-|-+|.+.
T Consensus 14 GTgky~--s~~~~~~ai~aSg~eivTvalRR~~~~~~-~~~~~~~----------~~i~~~~~~lLPNTaGc~tA~EAv~ 80 (247)
T PF05690_consen 14 GTGKYP--SPELMQEAIEASGAEIVTVALRRVNLGGK-PGGENIL----------DYIDRKGYTLLPNTAGCRTAEEAVR 80 (247)
T ss_dssp -----S--SHHHHHHHHHHCT-SEEEEECCGSTTTS--TTS--TT----------TTT-CCCSEEEEE-----SHHHHHH
T ss_pred ECCCCC--CHHHHHHHHHHHCCCEEEEEEEECCCCCC-CCCCCHH----------HHHCCCCCEECCCCCCCCCHHHHHH
T ss_conf 528999--99999999998599769999870256788-8864377----------6416048889876778889999999
Q ss_pred HH---HHC-CCCEEEEEECCCCCC--CCCHHHHHHHHHHHHHHCCCCCEE-EEECCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98---704-991899852677765--321589999999999741258748-98479899999999733481898742679
Q T0570 111 RA---KKL-KNIRLIFELKSHDTP--ERNRDAARLSVQMVKRMKLAKRTD-YISFNMDACKEFIRLCPKSEVSYLNGELS 183 (258)
Q Consensus 111 ~~---~~~-~~~~l~ieiK~~~~~--~~~~~~~~~~~~~i~~~~~~~~vi-v~Sf~~~~l~~~~~~~p~~~~~~l~~~~~ 183 (258)
.. +.. ..-.+-+|+-+++.. .....+.+..-.++ +-++ .|+ +.+-|+-..+++.... ..-++..-+
T Consensus 81 ~A~laRe~~~~~wIKLEVi~D~~~L~PD~~etl~Aae~Lv-~eGF--~VlPY~~~D~v~a~rL~d~G----c~avMPlgs 153 (247)
T PF05690_consen 81 TARLAREAFGTDWIKLEVIGDDKTLLPDPIETLKAAEILV-KEGF--VVLPYINDDPVLARRLEDAG----CAAVMPLGS 153 (247)
T ss_dssp HHHHHHCTT--SEEEE--BS-TTT--B-HHHHHHHHHHHH-HTT---EEEEEE-S-HHHHHHHHH--------EBEEBSS
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCC--EEEECCCCCHHHHHHHHHCC----CCEEEECCC
T ss_conf 9999999848985899984797664898579999999998-7899--99423897999999999769----977854467
Q ss_pred HHHHHHCCCEEECCCHHHHHCCHHHHHHHH-HCCCEEEEE-ECCCHHHHHHHHHCCCCEEEEC-------CHHHHHHHHH
Q ss_conf 788985286030345233206988999999-739979996-1699899999997589988708-------6899999998
Q T0570 184 PMELKELGFTGLDYHYKVLQSHPDWVKDCK-VLGMTSNVW-TVDDPKLMEEMIDMGVDFITTD-------LPEETQKILH 254 (258)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~v~~w-Tvn~~~~~~~~~~~GVdgI~TD-------~P~~~~~~l~ 254 (258)
+.-. ... -.++..++.+. +...+|.+= .+-.+++..+.+++|.|||..| +|..+.+.++
T Consensus 154 PIGS--------g~G----l~n~~~l~~i~e~~~vPvIvDAGIG~pSdAa~AMElGadaVLvNTAIA~A~dPv~MA~Af~ 221 (247)
T PF05690_consen 154 PIGS--------GRG----LQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVRMARAFK 221 (247)
T ss_dssp --------------------TTHHHHHHHHHHGSSSBEEEE---SHHHHHHHHH----EEEESHHHHTSSSHHHHHHHHH
T ss_pred CCCC--------CCC----CCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHH
T ss_conf 3236--------877----6999999999985799889857989889999999736655443357772899899999999
Q ss_pred H
Q ss_conf 6
Q T0570 255 S 255 (258)
Q Consensus 255 ~ 255 (258)
.
T Consensus 222 ~ 222 (247)
T PF05690_consen 222 L 222 (247)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 15
>PF12017 Transposase_37: Transposase protein
Probab=47.02 E-value=6.7 Score=16.28 Aligned_cols=125 Identities=11% Similarity=0.177 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHCCCCE
Q ss_conf 7778988899999987049918998526777653215899999999997412--58748984798999999997334818
Q T0570 98 NGEKLPTLEQYLKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKL--AKRTDYISFNMDACKEFIRLCPKSEV 175 (258)
Q Consensus 98 ~g~~iptL~evl~~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~i~~~~~--~~~viv~Sf~~~~l~~~~~~~p~~~~ 175 (258)
.|.|+|+.+-+..++.+ ++++ ++..+.++.++....+ .++..+.|||.=.+......+|....
T Consensus 97 kgyPLPs~rTL~r~~~~-------v~i~--------~G~ld~vl~lm~n~~~~~~dk~CvLsfDEmkv~~~~eyD~s~d~ 161 (236)
T PF12017_consen 97 KGYPLPSRRTLQRWLRD-------VKIK--------PGILDVVLDLMENETLPEEDKLCVLSFDEMKVAAVFEYDSSADV 161 (236)
T ss_pred CCCCCCCHHHHHHHHHH-------CCCC--------CCCHHHHHHHHHCCCCCHHHCEEEEEEEEEEECHHHCCCCCCCC
T ss_conf 39999977899999851-------7447--------77688999997417998430504676300020003114750003
Q ss_pred EEEECCCCHHH------HHHCCCEEECCCHHH---HHCCHHHHHHHHHCCCEEEEEECC-CHHHHHHHHHCCCC
Q ss_conf 98742679788------985286030345233---206988999999739979996169-98999999975899
Q T0570 176 SYLNGELSPME------LKELGFTGLDYHYKV---LQSHPDWVKDCKVLGMTSNVWTVD-DPKLMEEMIDMGVD 239 (258)
Q Consensus 176 ~~l~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~g~~v~~wTvn-~~~~~~~~~~~GVd 239 (258)
. .+..+-.. ++.-....+.+++.. ...-..+|.++|+.|..|.+-+-| .+.-..-+..+|+.
T Consensus 162 v--~~p~nyvqv~mvrGL~K~WKQpI~~~f~t~md~~~L~~iI~kL~~~g~~VvaivsD~g~~N~~lW~eLGis 233 (236)
T PF12017_consen 162 V--YEPSNYVQVAMVRGLKKSWKQPIYFGFNTKMDKDTLNNIIEKLHEIGYPVVAIVSDMGPCNQSLWRELGIS 233 (236)
T ss_pred C--CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCC
T ss_conf 4--57511568999999975246865874377256999999999998759828999748986107789980986
No 16
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid . This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides .
Probab=46.41 E-value=6.9 Score=16.22 Aligned_cols=119 Identities=12% Similarity=0.199 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHCCCCEEEEEE---EECCC-CEEEEECCCC--CC--------C----CCCCCCCHHHHHHHH-------
Q ss_conf 3208999999973899999811---97348-8789704765--54--------3----423237888876764-------
Q T0570 41 QNSIRSLERASEIGAYGSEFDV---HLTAD-NVLVVYHDND--IQ--------G----KHIQSCTYDELKDLQ------- 95 (258)
Q Consensus 41 ENTl~af~~A~~~G~~~iE~DV---~lTkD-g~~vv~HD~~--l~--------r----~~v~~~t~~el~~l~------- 95 (258)
+..-.-...|++.|++++=++- ..-++ |.+-+.-+.+ +. + ..+.=.+-+++....
T Consensus 12 ~~~k~~vt~AlEsGv~~vvv~~~~~~~~~~l~~~~~i~~~~~~l~~~~~~~~~g~~~~~~v~I~~~~~~~~a~~~~~~~~ 91 (347)
T PF01959_consen 12 DERKDVVTAALESGVDAVVVDPEDVEKVKELGRITVIAPDTDDLPDLEFLDDEGKEVGVYVEITDKEDEEEAAEAAKRAD 91 (347)
T ss_pred CHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCCC
T ss_conf 12789999999758989998988967775224518999514443113443136746899999888888999998623498
Q ss_pred -----CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf -----067778988899999987049918998526777653215899999999997412587489847989999999973
Q T0570 96 -----LSNGEKLPTLEQYLKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKRTDYISFNMDACKEFIRLC 170 (258)
Q Consensus 96 -----~~~g~~iptL~evl~~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~i~~~~~~~~viv~Sf~~~~l~~~~~~~ 170 (258)
...++-|| |+.+++.+.+ ....++...++ ..-++..++.+.. + .+-+++.+-|+..++.+....
T Consensus 92 ~viv~~~dW~iIP-lEnliA~~~~-~~~~i~a~v~~-------~~eA~~a~~~LE~-G-~dGVvl~~~d~~ei~~~~~~~ 160 (347)
T PF01959_consen 92 YVIVEFRDWTIIP-LENLIAALQG-QSTKIIAVVKD-------AEEARVALEILEK-G-VDGVVLDTDDPNEIKALVAAL 160 (347)
T ss_pred EEEEECCCCCEEC-HHHHHHHHCC-CCCEEEEEECC-------HHHHHHHHHHHCC-C-CCEEEECCCCHHHHHHHHHHH
T ss_conf 7999768883834-8999887507-88529999289-------8999999987601-8-774998889989999999766
No 17
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria.; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1yxy_B 1y0e_A.
Probab=38.81 E-value=9 Score=15.51 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCEEE-EEC
Q ss_conf 9888999999870499189985267776532158999999999974125874898479899999999733481898-742
Q T0570 102 LPTLEQYLKRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKLAKRTDYISFNMDACKEFIRLCPKSEVSY-LNG 180 (258)
Q Consensus 102 iptL~evl~~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~i~~~~~~~~viv~Sf~~~~l~~~~~~~p~~~~~~-l~~ 180 (258)
-||++|+-+++....++ +-+|--....| ..+.+ +++.+++.. .-++-=+-+.+......+...++ +|- +.+
T Consensus 51 TPT~~ev~~l~~aGadi-IA~DaT~R~Rp---~~l~~-lv~~i~~~~--~l~MAD~st~ee~~~A~~~G~D~-VgTTL~G 122 (192)
T PF04131_consen 51 TPTMKEVDALAEAGADI-IALDATDRPRP---ETLAE-LVKEIKEKY--QLLMADCSTLEEAIRAAELGFDI-VGTTLSG 122 (192)
T ss_dssp S-SHHHHHHHHCCT-SE-EEEE-SSS--S---S-HHH-HHHHHHHH---SEEEEE-SSCHHHHHHHH----E-E--TT--
T ss_pred CCCHHHHHHHHHCCCCE-EEEECCCCCCC---CCHHH-HHHHHHHHC--CCHHHCCCCHHHHHHHHHCCCCE-EECCCCC
T ss_conf 88899999999859999-99946899896---06999-999999939--77421469899999999869999-9888887
Q ss_pred CCCHHHHHHCCCEEECCCHHHHHCCHHHHHHHHHCCCEEEEE-ECCCHHHHHHHHHCCCCEEEEC----CHHHHHHH
Q ss_conf 679788985286030345233206988999999739979996-1699899999997589988708----68999999
Q T0570 181 ELSPMELKELGFTGLDYHYKVLQSHPDWVKDCKVLGMTSNVW-TVDDPKLMEEMIDMGVDFITTD----LPEETQKI 252 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~w-Tvn~~~~~~~~~~~GVdgI~TD----~P~~~~~~ 252 (258)
+... . .+..+ +=++++++.+.+.+|.+= -+|+|++..+++.+|++.|..- +|+...+.
T Consensus 123 YT~~-t------~~~~p-------D~~ll~~l~~~~~pvIaEG~i~tPe~a~~al~~GA~aVVVGsAITrP~~It~~ 185 (192)
T PF04131_consen 123 YTEY-T------KGEGP-------DFELLRELVEAGVPVIAEGRIHTPEQAKKALELGAHAVVVGSAITRPQEITKR 185 (192)
T ss_dssp --TT-S--------THH-------HHHHHHHHHH--SEEEE-----SHHHHHHHHC----EEEE----S-HHHHHHH
T ss_pred CCCC-C------CCCCC-------CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 7899-9------99998-------78999999977992998479899999999997399799989533798999999
No 18
>PF09614 Cas_Csy2: CRISPR-associated protein (Cas_Csy2)
Probab=33.33 E-value=11 Score=14.98 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCCC-CCHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCC-C------CCHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 8863-2089999999738999998119734887897047655434232-3------788887676406777898889999
Q T0570 38 GSAQ-NSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKHIQ-S------CTYDELKDLQLSNGEKLPTLEQYL 109 (258)
Q Consensus 38 ~~pE-NTl~af~~A~~~G~~~iE~DV~lTkDg~~vv~HD~~l~r~~v~-~------~t~~el~~l~~~~g~~iptL~evl 109 (258)
++|= --.-+|..|++....--..||++ +|+-|+.||..+...... + .|-+-+. .+|.+-+..+|.-
T Consensus 21 GfPslTAf~Gf~HaL~RkL~~~~~~l~l--~g~aVv~H~~~~q~~~~~~~~~~~f~lTrNpl~----k~g~~a~iieEgr 94 (296)
T PF09614_consen 21 GFPSLTAFLGFMHALQRKLNQSGTDLRL--EGVAVVCHDYQLQTYKPLGDFDYSFNLTRNPLD----KDGKTAAIIEEGR 94 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEE--EEEEEEECCCCEECCCCCCCCCCEEEECCCCCC----CCCCCCCCCCCCE
T ss_conf 6736888999999998764455776487--569999756521225688876404431358766----6787786474656
Q ss_pred HHHHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHHHHHCCCCCEEE-------EECC-HHHHHHHHHHHCCCC
Q ss_conf 99870499189985267776--53215899999999997412587489-------8479-899999999733481
Q T0570 110 KRAKKLKNIRLIFELKSHDT--PERNRDAARLSVQMVKRMKLAKRTDY-------ISFN-MDACKEFIRLCPKSE 174 (258)
Q Consensus 110 ~~~~~~~~~~l~ieiK~~~~--~~~~~~~~~~~~~~i~~~~~~~~viv-------~Sf~-~~~l~~~~~~~p~~~ 174 (258)
-. =++.|+|+++.... ......+.+.+...+....+..-.++ .++. .+.-+.++++.|...
T Consensus 95 ~h----L~vSLvI~~~g~~~~~~~~~~~~~~~~~~~l~~~RlAGG~I~~~~~p~~~~~~~~~~~~~~~~llpGf~ 165 (296)
T PF09614_consen 95 CH----LTVSLVIEVSGEIDGGDAQLQELAEQLKQLLQPMRLAGGSIISIGPPEIIELPEKELRRLLRRLLPGFA 165 (296)
T ss_pred EE----EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCHHHHHHHHHHHCCCEE
T ss_conf 62----799999997352465324589999999988632532675683147874560667889999986488829
No 19
>PF02638 DUF187: Uncharacterised BCR, COG1649; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=30.94 E-value=12 Score=14.75 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 863208999999973899999811973488
Q T0570 39 SAQNSIRSLERASEIGAYGSEFDVHLTADN 68 (258)
Q Consensus 39 ~pENTl~af~~A~~~G~~~iE~DV~lTkDg 68 (258)
.+|.--..+...-++|++.|=+.|+-+.|-
T Consensus 64 ~~~~~~~~i~~L~~~~~NtV~~qV~~~Gda 93 (401)
T PF02638_consen 64 SEEQLAELIDRLDSLGFNTVYFQVRPRGDA 93 (401)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEECCEE
T ss_conf 599999999999986998899999819658
No 20
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR001395 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others . All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins . The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones . Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases . Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity . ; GO: 0016491 oxidoreductase activity; PDB: 1ynp_A 1ynq_A 3erp_B 1zsx_A 2r9r_G 1qrq_B 3eau_A 3eb4_A 2a79_A 3eb3_A ....
Probab=29.78 E-value=13 Score=14.63 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 6320899999997389999981
Q T0570 40 AQNSIRSLERASEIGAYGSEFD 61 (258)
Q Consensus 40 pENTl~af~~A~~~G~~~iE~D 61 (258)
.|.....+..|++.|.+.|++-
T Consensus 16 ~~~~~~~l~~A~~~Gin~~DtA 37 (284)
T PF00248_consen 16 EEEALAILRRALDAGINFFDTA 37 (284)
T ss_dssp HHHHHHHHHHHHH----EEEEC
T ss_pred HHHHHHHHHHHHHCCCCEECCC
T ss_conf 9999999999998599874566
No 21
>PF10847 DUF2656: Protein of unknown function (DUF2656)
Probab=29.20 E-value=11 Score=15.07 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=22.9
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 789704765543423237888876764067778
Q T0570 69 VLVVYHDNDIQGKHIQSCTYDELKDLQLSNGEK 101 (258)
Q Consensus 69 ~~vv~HD~~l~r~~v~~~t~~el~~l~~~~g~~ 101 (258)
++|+.|...+...-|-.++.+|+.+--.++...
T Consensus 1 ~fvLSHNlqi~s~~vp~ls~~elA~~ll~~~~~ 33 (132)
T PF10847_consen 1 RFVLSHNLQIQSEIVPALSAEELAQGLLSHSSG 33 (132)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 955532553465446876899999999860887
No 22
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related , , , . All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N-terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2ols_A 1vbh_A 1vbg_A 1ggo_A 1kbl_A 1dik_A 2dik_A 1kc7_A 1jde_A 2r82_A ....
Probab=27.76 E-value=14 Score=14.41 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=39.1
Q ss_pred CHHHHHCCHHHHHHHHHCCCEEEEEE--CCCHHHHHHHHHCCCCEEEEC--CHHHHHHHHH
Q ss_conf 52332069889999997399799961--699899999997589988708--6899999998
Q T0570 198 HYKVLQSHPDWVKDCKVLGMTSNVWT--VDDPKLMEEMIDMGVDFITTD--LPEETQKILH 254 (258)
Q Consensus 198 ~~~~~~~~~~~v~~~~~~g~~v~~wT--vn~~~~~~~~~~~GVdgI~TD--~P~~~~~~l~ 254 (258)
++..+..-...++.++++|++|.+-. .-+|.....++.+|++.+... .-..+++.++
T Consensus 230 ~pavlr~i~~~i~~a~~~g~~v~vCGE~a~dp~~~~~L~~lGi~~lSv~p~~i~~vk~~i~ 290 (293)
T PF02896_consen 230 HPAVLRLIKQVIDAAHKAGIPVSVCGEMASDPEAIPLLLGLGIDSLSVSPSAIPRVKKAIR 290 (293)
T ss_dssp SHHHHHHHHHHHHHHHHTT-BEEE-------HHHHHHHHH----EEEE-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHH
T ss_conf 6899999999999999829999973010179899999998699989987788999999998
No 23
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins. ; PDB: 1ru8_A 3h7e_A 2d13_A.
Probab=27.36 E-value=12 Score=14.75 Aligned_cols=12 Identities=33% Similarity=0.210 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHC
Q ss_conf 208999999973
Q T0570 42 NSIRSLERASEI 53 (258)
Q Consensus 42 NTl~af~~A~~~ 53 (258)
-|..|+..|.+.
T Consensus 12 DS~~Al~~a~~~ 23 (218)
T PF01902_consen 12 DSTLALYRALRQ 23 (218)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999872
No 24
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3gk0_D 1m5w_B 1ixp_C 1ho4_C 1ho1_A 1ixq_D 1ixo_B 1ixn_B 3f4n_B.
Probab=27.14 E-value=14 Score=14.35 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 88632089999999738999998119734887897047655434232378888767
Q T0570 38 GSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKHIQSCTYDELKD 93 (258)
Q Consensus 38 ~~pENTl~af~~A~~~G~~~iE~DV~lTkDg~~vv~HD~~l~r~~v~~~t~~el~~ 93 (258)
.+| +-+.+-..|...|+|+|-+-.+ -||+.+++-....|++
T Consensus 20 ~~P-d~v~aA~ia~~aGAdgITvHlR--------------eDrRHI~d~Dv~~L~~ 60 (239)
T PF03740_consen 20 DYP-DPVEAAFIAENAGADGITVHLR--------------EDRRHIQDRDVRRLRE 60 (239)
T ss_dssp --S--HHHHHHHHHH-----EEEEB---------------TT-SSS-HHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHCCCCEEEECCC--------------CCCCCCCHHHHHHHHH
T ss_conf 998-9999999999839997882688--------------7646688899999999
No 25
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 queuosine at position 34 in bacterial tRNAs and This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position , . The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues .; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 1q65_A 1wkf_A 1q2r_D 2z1x_A 1q2s_B 2pwu_A 1ozq_A 3c2y_A 2pwv_A 1ozm_A ....
Probab=26.18 E-value=15 Score=14.24 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=33.8
Q ss_pred HHHHHHH---CCCEEEEEECCCHHHHHHHHHCCCCEEEECCHHHHHH
Q ss_conf 9999997---3997999616998999999975899887086899999
Q T0570 208 WVKDCKV---LGMTSNVWTVDDPKLMEEMIDMGVDFITTDLPEETQK 251 (258)
Q Consensus 208 ~v~~~~~---~g~~v~~wTvn~~~~~~~~~~~GVdgI~TD~P~~~~~ 251 (258)
.++.... .+++.|+..+-+|.++-.++.+|||.+-+..|.+..+
T Consensus 102 ~l~~~~~~lp~~kpryl~G~g~P~~i~~~v~~GvD~FD~~~p~r~Ar 148 (238)
T PF01702_consen 102 ILEAIIPNLPPDKPRYLMGVGTPEDILEAVALGVDLFDCVYPTRYAR 148 (238)
T ss_dssp HHHHHHHCS-TTS-EEE-----HHHHHHHHT----EEEESHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCEEECCCHHHHHHH
T ss_conf 99999854888773773498999999999985921764616899984
No 26
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32
Probab=26.04 E-value=14 Score=14.44 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=13.6
Q ss_pred EEEEECCCC-EEEEECCC
Q ss_conf 811973488-78970476
Q T0570 60 FDVHLTADN-VLVVYHDN 76 (258)
Q Consensus 60 ~DV~lTkDg-~~vv~HD~ 76 (258)
..|-+|+|| .+||+|..
T Consensus 4 ~~vavT~dG~tIVcwHP~ 21 (96)
T PF10210_consen 4 VEVAVTSDGRTIVCWHPS 21 (96)
T ss_pred EEEEECCCCCEEEEECCC
T ss_conf 468872699789985799
No 27
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3e0v_B 1pkl_D 3e0w_A 2vgi_C 2vgg_B 2vgf_C 2vgb_A 1pkm_A 1f3x_B 1aqf_H ....
Probab=23.66 E-value=17 Score=13.96 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=59.1
Q ss_pred EEEEEC--CHHHHHHHHHHH----CCCCEEE-EEC---CCCHHHHH--------HCCCEEECCCHHHH-HCCHHHHHHHH
Q ss_conf 489847--989999999973----3481898-742---67978898--------52860303452332-06988999999
Q T0570 153 TDYISF--NMDACKEFIRLC----PKSEVSY-LNG---ELSPMELK--------ELGFTGLDYHYKVL-QSHPDWVKDCK 213 (258)
Q Consensus 153 viv~Sf--~~~~l~~~~~~~----p~~~~~~-l~~---~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~v~~~~ 213 (258)
.+..|| +.+.+..+|+.. +.+++-- +.. ..+-.+.- ..+-.|+...++.+ ...+..+..++
T Consensus 192 ~va~SFVr~~~DV~~~r~~l~~~g~~~~iiaKIE~~~av~nl~eI~~~sDgimvARGDLgve~~~e~vp~~Qk~ii~~~~ 271 (348)
T PF00224_consen 192 FVALSFVRSAEDVRELRKILEENGSNIKIIAKIETPEAVENLDEIIEASDGIMVARGDLGVEIPLEKVPIIQKRIIRKCN 271 (348)
T ss_dssp EEEETTE-SHHHHHHHHHHHHHTTTTSEEEEEE-S----TTHHHHHHH----EEE-------S-GGGHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCHHHHHHHCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99997869889999999998715998579996289888768897886599999954344422059999999999999999
Q ss_pred HCCCEEEEEE------CCC-------HHHHHHHHHCCCCEEEEC-------CHHHHHHHHHH
Q ss_conf 7399799961------699-------899999997589988708-------68999999986
Q T0570 214 VLGMTSNVWT------VDD-------PKLMEEMIDMGVDFITTD-------LPEETQKILHS 255 (258)
Q Consensus 214 ~~g~~v~~wT------vn~-------~~~~~~~~~~GVdgI~TD-------~P~~~~~~l~~ 255 (258)
.+|++|++=| +++ ..+...++..|+|+++-. ||....+.+++
T Consensus 272 ~~~kpvI~ATqmLeSM~~~p~PTRAEvtDvanav~dG~d~vmLs~ETa~G~yP~e~V~~m~~ 333 (348)
T PF00224_consen 272 EAGKPVIVATQMLESMIKNPRPTRAEVTDVANAVLDGADAVMLSGETAIGKYPVEAVKTMAR 333 (348)
T ss_dssp HTT---EEESSSSGGGGTSSS--HHHHHHHHHHHH----EEEE---------HHHHHHHHHH
T ss_pred HHCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 84998899815445523279996588898999998088689974764578788999999999
No 28
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 This is a protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=22.35 E-value=18 Score=13.80 Aligned_cols=15 Identities=27% Similarity=0.087 Sum_probs=7.0
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999999738999998
Q T0570 46 SLERASEIGAYGSEF 60 (258)
Q Consensus 46 af~~A~~~G~~~iE~ 60 (258)
.|-.|.++|+|+||+
T Consensus 73 ~f~~aV~AGAdliEI 87 (242)
T PF04481_consen 73 LFVAAVKAGADLIEI 87 (242)
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 889999827877876
No 29
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=21.24 E-value=18 Score=13.67 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH-CCCCEEEEEE
Q ss_conf 566673799813788878886320899999997-3899999811
Q T0570 20 AAKDNTKVIAHRGYWKTEGSAQNSIRSLERASE-IGAYGSEFDV 62 (258)
Q Consensus 20 ~~~~~~~iiaHRG~~~~~~~pENTl~af~~A~~-~G~~~iE~DV 62 (258)
.+.++.++.|-||.|.| -++.|+...+. .|.+.||++-
T Consensus 50 ~pAnnvLL~G~RGtGKS-----SlVKall~~y~~~gLRlIev~k 88 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKS-----SLVKALLNEYADQGLRLIEVDK 88 (249)
T ss_pred CCCCEEEEECCCCCCHH-----HHHHHHHHHHHHCCEEEEEECH
T ss_conf 98753898759999889-----9999999998756738999868
Done!