Query T0571 ZP_02066433.1, Bacteroides ovatus ATCC 8483, 344 residues
Match_columns 344
No_of_seqs 153 out of 205
Neff 7.2
Searched_HMMs 22458
Date Fri Jun 4 14:30:21 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0571.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0571.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y0g_A Protein YCEI; lipid bin 73.8 2.7 0.00012 18.8 3.7 40 1-40 1-41 (191)
2 3e9t_A Na/Ca exchange protein; 68.6 4.2 0.00019 17.4 9.7 82 60-162 17-98 (114)
3 3gin_A Sodium/calcium exchange 36.2 14 0.00061 13.8 5.0 81 60-160 37-117 (160)
4 3h3i_A Putative lipid binding 32.8 15 0.00069 13.5 4.8 40 285-325 101-140 (150)
5 1uwf_A FIMH protein, FIMH; bac 29.4 18 0.00078 13.1 3.4 13 156-168 113-125 (158)
6 2a3m_A COG3005: nitrate/TMAO r 24.5 12 0.00054 14.2 0.0 18 1-18 1-18 (130)
7 3fso_A Integrin beta-4, GP150; 22.3 23 0.001 12.2 8.5 83 62-160 22-105 (123)
8 3e9u_A Na/Ca exchange protein; 19.0 27 0.0012 11.7 4.0 71 63-152 25-95 (162)
9 3b55_A Succinoglycan biosynthe 18.9 19 0.00082 12.9 0.0 19 1-20 1-19 (451)
10 1xf1_A C5A peptidase, SCP; hyd 18.5 28 0.0012 11.7 5.1 60 69-134 504-563 (926)
No 1
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=73.81 E-value=2.7 Score=18.81 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCEEEEEEC
Q ss_conf 9135889999998776301477655656-511114888632
Q T0571 1 MKKNLAYIGLVLLILTWTSCESSDNEFP-DFDYQTVYFANQ 40 (344)
Q Consensus 1 MKk~~~~l~l~~l~~l~tSC~n~e~~~e-~~~~~~vy~~~~ 40 (344)
|||++..+.+++++++..++.-.+|... +..+..+.|..+
T Consensus 1 Mkk~~l~l~l~al~~~~~~a~a~~~~id~~~~hS~v~f~~~ 41 (191)
T 1y0g_A 1 MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQ 41 (191)
T ss_dssp ----------------------CEEEECTTTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEEE
T ss_conf 92469999999999763240366379758886589999999
No 2
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster}
Probab=68.55 E-value=4.2 Score=17.42 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=48.4
Q ss_pred CCEEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCC
Q ss_conf 73479999998516677754799998765898765211118666885864166367507974776257667998412156
Q T0571 60 NQHKMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFA 139 (344)
Q Consensus 60 ~~~~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~ 139 (344)
+.....+++..+|. ....++|.+...+. .+..+.+| ...+.++++++|+..+.+.|.+.+..
T Consensus 17 ~~g~v~i~V~R~g~--~~~~vtV~~~t~~g------tA~~g~Df--------~~~~g~v~F~~Ge~~~~i~i~i~dD~-- 78 (114)
T 3e9t_A 17 NCGEFEVRVVRRGD--ISTYASVEYETQDG------TASAGTDF--------VGRKGLLSFPPGVDEQRFRIEVIDDD-- 78 (114)
T ss_dssp TCCEEEEEEEEEEC--CSSCEEEEEEEECS------SSCBTTTB--------CCCEEEEEECTTCCEEEEEEEBCCCS--
T ss_pred CCEEEEEEEEEECC--CCCEEEEEEEEECC------CCCCCCCE--------EECCCEEEEECCCCEEEEEEEECCCC--
T ss_conf 89899999999779--99879999998978------65699776--------50386899989941798898962799--
Q ss_pred CCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 66677872588999841567421
Q T0571 140 DEKSISENYVIPLLMTNVQGADS 162 (344)
Q Consensus 140 ~~l~~~~~YvLPl~I~~~sg~~~ 162 (344)
..+.++.+. |+|.+++++..
T Consensus 79 -~~E~~e~f~--v~L~~~~~~a~ 98 (114)
T 3e9t_A 79 -VFEEDECFY--IRLFNPSEGVK 98 (114)
T ss_dssp -SCCCCEEEE--EEEECCCTTEE
T ss_pred -CCCCCEEEE--EEEECCCCCCE
T ss_conf -746988999--99967988849
No 3
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A
Probab=36.23 E-value=14 Score=13.83 Aligned_cols=81 Identities=17% Similarity=0.373 Sum_probs=45.5
Q ss_pred CCEEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCC
Q ss_conf 73479999998516677754799998765898765211118666885864166367507974776257667998412156
Q T0571 60 NQHKMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFA 139 (344)
Q Consensus 60 ~~~~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~ 139 (344)
+.....+.+..++. ...+.+.|.+..-+- .+..+.+ |...+.++++++|+..+.++|.+.+...
T Consensus 37 ~~G~v~v~V~R~~G-~~~~~v~V~~~t~~g------tA~~g~D--------y~~~~g~v~F~~Ge~~~~i~i~i~dD~~- 100 (160)
T 3gin_A 37 NCGTVALTIIRRGG-DLTNTVFVDFRTEDG------TANAGSD--------YEFTEGTVVFKPGETQKEIRVGIIDDDI- 100 (160)
T ss_dssp TSSEEEEEEEEESS-CTTSCEEEEEEEEES------SSCBTTT--------BCCCEEEEEECTTCCEEEEEEEBCCCSC-
T ss_pred CCCEEEEEEEEECC-CCCCEEEEEEEEECC------CCEEEEE--------EEEECCEEEECCCCCEEEEEEEEEECCC-
T ss_conf 78789999998025-899889999998899------6320101--------8610687998799847899999983776-
Q ss_pred CCCCCCCEEEEEEEEECCCCC
Q ss_conf 666778725889998415674
Q T0571 140 DEKSISENYVIPLLMTNVQGA 160 (344)
Q Consensus 140 ~~l~~~~~YvLPl~I~~~sg~ 160 (344)
.+.++.+.| +|.+.+++
T Consensus 101 --~E~~E~F~v--~Ls~~~~~ 117 (160)
T 3gin_A 101 --FEEDKNFLV--HLSNVKVS 117 (160)
T ss_dssp --CCCCEEEEE--EEEEEEC-
T ss_pred --CCCCEEEEE--EEECCCCC
T ss_conf --769889999--99899777
No 4
>3h3i_A Putative lipid binding protein; NP_811174.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.77 E-value=15 Score=13.46 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE
Q ss_conf 24772147774457853306899999984689747999647
Q T0571 285 SGKFVSKGEKNSLGGKDRNAIYLDYTVNLTDNNIQLATKDT 325 (344)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~l~Y~~~~~~~~~~y~~~~t 325 (344)
.||....+...+.+.| .+.+...|.++.-..|++|++++.
T Consensus 101 dGKVl~~~attpsg~~-~DsI~~~~~f~~D~~G~TY~v~Gf 140 (150)
T 3h3i_A 101 DGKVLEKAATTPSGMP-ADSIVYMVQFDDDEDGLTYKVSGF 140 (150)
T ss_dssp EEEEEEEEEECTTSCE-EEEEEEEEEETTCTTCCCEEEEEE
T ss_pred CCEEEECCCCCCCCCC-CCEEEEEEEEECCCCCCEEEEEEE
T ss_conf 3748844200789971-336999999640799748999648
No 5
>1uwf_A FIMH protein, FIMH; bacterial adhesin, carbohydrate recognition, adherence to mammalian cells, IG-variable fold, cell adhesion; HET: DEG; 1.69A {Escherichia coli} SCOP: b.2.3.2 PDB: 2vco_A* 1tr7_B*
Probab=29.37 E-value=18 Score=13.08 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 1567421245640
Q T0571 156 NVQGADSILQGKP 168 (344)
Q Consensus 156 ~~sg~~~i~~~~~ 168 (344)
+..++..|.+|..
T Consensus 113 ~~a~gV~I~~G~~ 125 (158)
T 1uwf_A 113 SSAGGVAIKAGSL 125 (158)
T ss_dssp TTCCEEEECTTCE
T ss_pred CCCCCEEEECCCE
T ss_conf 9888679866988
No 6
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=24.53 E-value=12 Score=14.20 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHHHC
Q ss_conf 913588999999877630
Q T0571 1 MKKNLAYIGLVLLILTWT 18 (344)
Q Consensus 1 MKk~~~~l~l~~l~~l~t 18 (344)
|||.++.++++++++.+.
T Consensus 1 m~k~l~~~~vl~~~~~~~ 18 (130)
T 2a3m_A 1 MRKSLFAVMVLALVAAFA 18 (130)
T ss_dssp ------------------
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 906899999999999998
No 7
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} PDB: 3fq4_A 3h6a_A
Probab=22.26 E-value=23 Score=12.20 Aligned_cols=83 Identities=8% Similarity=0.070 Sum_probs=45.8
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCCCC
Q ss_conf 47999999851667775479999876589876521111866688586416636750797477625766799841215666
Q T0571 62 HKMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFADE 141 (344)
Q Consensus 62 ~~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~~~ 141 (344)
....+++..++. ....+.|.+...+.. +..+. .|...+-+++++.|+..+.+.|.+.+....+.
T Consensus 22 g~~~i~V~R~~~--~~g~v~V~~~t~~gt------A~~g~--------Df~~~~~~l~F~~Ge~~~~i~I~i~dd~~~e~ 85 (123)
T 3fso_A 22 QVARIPVIRRVL--DGGKSQVSYRTQDGT------AQGNR--------DYIPVEGELLFQPGEAWKELQVKLLELQEVDS 85 (123)
T ss_dssp SEEEEEEEEESC--CSSCEEEEEEEEESS------SCBTT--------TBCCCEEEEEECTTCCEEEEEEEBCCC-----
T ss_pred EEEEEEEEEECC--CCCEEEEEEEEECCC------CCCCC--------CCCCCCCEEEEECCCEEEEEEEEEECCCCCCC
T ss_conf 299999999789--981799999978996------53378--------84035533999489658999999951765346
Q ss_pred -CCCCCEEEEEEEEECCCCC
Q ss_conf -6778725889998415674
Q T0571 142 -KSISENYVIPLLMTNVQGA 160 (344)
Q Consensus 142 -l~~~~~YvLPl~I~~~sg~ 160 (344)
..+...-.+=|.+.+.++.
T Consensus 86 ~~~~~~~e~f~v~L~~~~~~ 105 (123)
T 3fso_A 86 LLRGRQVRRFHVQLSNPKFG 105 (123)
T ss_dssp ----CCEEEEEEEEEEEETT
T ss_pred CCCCCCCEEEEEEECCCCCC
T ss_conf 64453658999996789888
No 8
>3e9u_A Na/Ca exchange protein; CBD2, CALX, membrane, transmembrane, membrane protein; 2.50A {Drosophila melanogaster}
Probab=19.01 E-value=27 Score=11.74 Aligned_cols=71 Identities=8% Similarity=0.200 Sum_probs=41.9
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCCCCC
Q ss_conf 79999998516677754799998765898765211118666885864166367507974776257667998412156666
Q T0571 63 KMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFADEK 142 (344)
Q Consensus 63 ~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~~~l 142 (344)
...+.|..++. ....++|.+..-+.. +..+. .|.-.+.++++.+|+....+.|.+.+.. ..
T Consensus 25 ~v~v~V~R~~g--~~g~vsV~~~t~~~t------A~~~~--------Dy~~~~g~l~F~~ge~~k~i~i~i~dD~---~~ 85 (162)
T 3e9u_A 25 RFELKVMRYSG--ARGTVIVPYWTENDT------ATESK--------DYEGARGELVFENNESEKFIDLFILEES---SY 85 (162)
T ss_dssp SCCEEEEEESC--CCSCEEEEEEEEESS------SCTTT--------TBCCCEEEEEECSSCCEEEECCCBCCCC---CS
T ss_pred EEEEEEEEECC--CCCEEEEEEEEECCC------CCCCC--------CCEEEEEEEEEECCCEEEEEEEEEECCC---CC
T ss_conf 99999998179--997599999988998------76786--------4113013799706433999999998898---76
Q ss_pred CCCCEEEEEE
Q ss_conf 7787258899
Q T0571 143 SISENYVIPL 152 (344)
Q Consensus 143 ~~~~~YvLPl 152 (344)
+.++.+.|=|
T Consensus 86 E~~E~F~v~L 95 (162)
T 3e9u_A 86 EKDVSFKVHI 95 (162)
T ss_dssp SCEEEEEEEE
T ss_pred CCCEEEEEEE
T ss_conf 6856999998
No 9
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus cereus atcc 14579} SCOP: c.150.1.3 PDB: 2rad_A
Probab=18.93 E-value=19 Score=12.91 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHHHHCCC
Q ss_conf 91358899999987763014
Q T0571 1 MKKNLAYIGLVLLILTWTSC 20 (344)
Q Consensus 1 MKk~~~~l~l~~l~~l~tSC 20 (344)
|||+.+ ++|++.+++++.|
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~ 19 (451)
T 3b55_A 1 MKKKII-IAIVASAITMTHF 19 (451)
T ss_dssp --------------------
T ss_pred CCCEEH-HHHHHHHHHHHHH
T ss_conf 972300-7999999998662
No 10
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=18.50 E-value=28 Score=11.66 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=34.3
Q ss_pred EEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEE
Q ss_conf 985166777547999987658987652111186668858641663675079747762576679984
Q T0571 69 AWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLT 134 (344)
Q Consensus 69 ~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~ 134 (344)
.+......++..+.++..... ...-.+..+...|...++++..++++|+|+.. .+.|+++
T Consensus 504 ~~~~~n~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vtv~ag~s~-~vtvt~~ 563 (926)
T 1xf1_A 504 TVNVHNKSDKPQELYYQATVQ-----TDKVDGKHFALAPKVLYETSWQKITIPANSSK-QVTVPID 563 (926)
T ss_dssp EEEEEECSSSCEEEEEEEEEE-----EEEEETTEEEEEEEEEEECCCEEEEECTTEEE-EEEEEEE
T ss_pred EEEEECCCCCCEEEEEEEEEE-----EEECCCCEEECCCCCEEECCCCEEEECCCCEE-EEEEEEC
T ss_conf 999761588746988988875-----10014742431565237457887998999807-9999962
Done!