Query         T0571 ZP_02066433.1, Bacteroides ovatus ATCC 8483, 344 residues
Match_columns 344
No_of_seqs    153 out of 205
Neff          7.2 
Searched_HMMs 11830
Date          Fri Jun  4 14:34:21 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0571.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0571.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF08522 DUF1735:  Domain of un  99.0   1E-10 8.6E-15   89.8   5.4   59   91-151     1-59  (59)
  2 PF12262 Lipase_bact_N:  Bacter  83.4    0.31 2.6E-05   23.4   2.7   25    1-26      1-25  (268)
  3 PF08085 Entericidin:  Enterici  79.9    0.37 3.2E-05   22.8   2.1   21    1-21      1-22  (42)
  4 PF02402 Lysis_col:  Lysis prot  73.9    0.28 2.3E-05   23.7   0.1   21    1-22      1-21  (46)
  5 PF01441 Lipoprotein_6:  Lipopr  73.6    0.28 2.3E-05   23.7   0.0   24    1-25      1-24  (210)
  6 PF07901 DUF1672:  Protein of u  73.4    0.73 6.1E-05   20.8   2.1   23    1-25      1-23  (304)
  7 PF12245 DUF3607:  Protein of u  68.6     2.2 0.00019   17.4   6.8   80   52-134    51-134 (724)
  8 PF03160 Calx-beta:  Calx-beta   65.0     2.6 0.00022   17.0   7.8   75   60-152    26-100 (101)
  9 PF03304 Mlp:  Mlp lipoprotein   64.6     1.2  0.0001   19.3   1.7   22    1-24      1-22  (181)
 10 PF06085 Rz1:  Lipoprotein Rz1   61.6     1.8 0.00015   18.1   2.2   23    1-23      1-23  (59)
 11 PF06291 Lambda_Bor:  Bor prote  61.4     1.5 0.00013   18.5   1.8   19    1-22      1-19  (97)
 12 PF07273 DUF1439:  Protein of u  58.0     0.9 7.6E-05   20.2   0.1   20    1-22      1-20  (177)
 13 PF10566 Glyco_hydro_97:  Glyco  57.4     3.5 0.00029   16.1   3.3   22  128-153   121-142 (643)
 14 PF10671 TcpQ:  Toxin co-regula  55.7     1.3 0.00011   19.0   0.6   19    1-22      1-19  (169)
 15 PF01298 Lipoprotein_5:  Transf  54.6     1.8 0.00015   18.1   1.2   21    1-21      1-22  (593)
 16 PF02030 Lipoprotein_8:  Hypoth  50.4     3.9 0.00033   15.7   2.4   24    1-24      1-27  (493)
 17 PF08139 LPAM_1:  Prokaryotic m  49.4     3.2 0.00027   16.3   1.8   18    2-22      9-26  (26)
 18 PF11153 DUF2931:  Protein of u  48.7     4.7  0.0004   15.1   5.4   16  141-156   105-120 (216)
 19 PF07172 GRP:  Glycine rich pro  48.1     3.6  0.0003   15.9   1.9   21    1-21      1-22  (95)
 20 PF06474 MLTD_N:  MLTD_N;  Inte  47.7     3.6  0.0003   16.0   1.8   21    1-25      1-21  (95)
 21 PF03207 OspD:  Borrelia outer   45.9     4.6 0.00039   15.2   2.2   24    1-24      1-24  (254)
 22 PF11810 DUF3332:  Domain of un  45.1     4.8  0.0004   15.1   2.1   19    2-20      2-20  (176)
 23 PF09160 FimH_man-bind:  FimH,   45.0     5.3 0.00045   14.7   2.7   33  100-132    95-130 (150)
 24 PF12099 DUF3575:  Protein of u  44.9     5.3 0.00045   14.7   6.7   19    1-20      1-19  (189)
 25 PF11839 DUF3359:  Protein of u  44.7     4.6 0.00039   15.2   2.0   24    1-25      1-24  (96)
 26 PF12092 DUF3568:  Protein of u  42.9     5.2 0.00044   14.8   2.1   20    2-21      1-20  (131)
 27 PF03978 Borrelia_REV:  Borreli  41.3       4 0.00034   15.6   1.3   23    1-23      1-23  (160)
 28 PF06551 DUF1120:  Protein of u  40.7     6.2 0.00052   14.3   2.2   19    1-20      1-19  (145)
 29 PF06788 UPF0257:  Uncharacteri  40.1       5 0.00042   14.9   1.6   23    1-26      1-23  (236)
 30 PF09403 FadA:  Adhesion protei  37.3     2.9 0.00024   16.6   0.0   20    1-20      1-20  (126)
 31 PF04449 Fimbrial_CS1:  CS1 typ  35.8     7.3 0.00062   13.8   4.7   14   77-90     54-67  (143)
 32 PF03032 Brevenin:  Brevenin/es  34.5     6.1 0.00051   14.3   1.3   27    1-28      3-29  (46)
 33 PF01203 GSPII_N:  Bacterial ty  33.9     7.8 0.00066   13.6   2.1   15    1-15      1-15  (252)
 34 PF06649 DUF1161:  Protein of u  31.9     7.6 0.00064   13.7   1.5   27    1-27      1-31  (75)
 35 PF04507 DUF576:  Protein of un  31.8     8.4 0.00071   13.3   2.1   21    2-22      5-25  (257)
 36 PF11254 DUF3053:  Protein of u  30.8     8.7 0.00074   13.2   2.1   18    8-25      7-24  (229)
 37 PF09716 ETRAMP:  Malarial earl  28.8     9.4  0.0008   13.0   2.5   22    1-22      1-24  (84)
 38 PF05628 Borrelia_P13:  Borreli  28.5     8.3  0.0007   13.4   1.2   21    1-21      1-21  (167)
 39 PF10626 TraO:  Conjugative tra  26.9     7.6 0.00064   13.7   0.7   31  143-173   105-135 (193)
 40 PF07867 DUF1654:  Protein of u  26.9      10 0.00086   12.8   2.1   19  257-275    49-67  (73)
 41 PF06646 Mycoplasma_p37:  High   26.8     5.4 0.00046   14.7   0.0   26    1-26      1-30  (386)
 42 PF09710 Trep_dent_lipo:  Trepo  26.6     5.8 0.00049   14.5   0.1   30  181-213   206-235 (394)
 43 PF05540 Serpulina_VSP:  Serpul  26.1      10 0.00089   12.7   1.5   18  142-159   128-145 (377)
 44 PF06030 DUF916:  Bacterial pro  25.4      11 0.00091   12.6   6.1   82   52-135    17-106 (122)
 45 PF03082 MAGSP:  Male accessory  24.3      11 0.00096   12.5   1.6   22    1-22      1-22  (264)
 46 PF07996 T4SS:  Type IV secreti  23.4     6.9 0.00058   14.0   0.0   20    1-20      1-20  (217)
 47 PF05643 DUF799:  Putative bact  22.6      12   0.001   12.2   2.4   18    1-21      1-18  (215)
 48 PF00820 Lipoprotein_1:  Borrel  22.6      12   0.001   12.2   3.0  104    1-127     1-122 (273)
 49 PF11873 DUF3393:  Domain of un  22.6      10 0.00087   12.7   0.8   16    8-23      4-19  (204)
 50 PF06280 DUF1034:  Fn3-like dom  22.6      12   0.001   12.2   3.9   24  110-134    56-79  (112)
 51 PF06873 SerH:  Cell surface im  22.3      12   0.001   12.2   1.9   12    1-12      1-12  (403)
 52 PF01514 YscJ_FliF:  Secretory   22.1     7.6 0.00064   13.7   0.0   22    1-22      1-27  (206)

No 1  
>PF08522 DUF1735:  Domain of unknown function (DUF1735);  InterPro: IPR013728   This domain of unknown function is found in a number of Bacteroidetes proteins including acylhydrolases. 
Probab=99.04  E-value=1e-10  Score=89.76  Aligned_cols=59  Identities=24%  Similarity=0.418  Sum_probs=50.7

Q ss_pred             HHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf             8765211118666885864166367507974776257667998412156666778725889
Q T0571            91 CDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFADEKSISENYVIP  151 (344)
Q Consensus        91 L~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~~~l~~~~~YvLP  151 (344)
                      |+ .||++|+++|++||+++|+|++.+++|+||+..+.++|+|+...+. .|+.+.+||||
T Consensus         1 l~-~YN~~~~t~y~~LP~~~Y~l~~~~v~i~aG~~~~~~~i~v~~~~~~-~l~~~~~Y~LP   59 (59)
T PF08522_consen    1 LD-AYNAANGTDYKLLPEDCYSLPSKTVTIPAGESSSSVPITVKFKGLE-ELDPDKTYVLP   59 (59)
T ss_pred             CH-HHHHHCCCCCEECCHHHEEECCCEEEEECCCEEEEEEEEEEECCCC-CCCCCCEEECC
T ss_conf             97-6786509861888846889659879990999888666999948842-27889738369


No 2  
>PF12262 Lipase_bact_N:  Bacterial virulence factor lipase N-terminal
Probab=83.41  E-value=0.31  Score=23.38  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             91358899999987763014776556
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSDNE   26 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e~~   26 (344)
                      |||+++.++++. ++.+++|-++...
T Consensus         1 Mkk~~l~~~ias-al~LaGCg~ds~~   25 (268)
T PF12262_consen    1 MKKKLLSLAIAS-ALGLAGCGGDSES   25 (268)
T ss_pred             CCHHHHHHHHHH-HHHCCCCCCCCCC
T ss_conf             943589999999-9751114799767


No 3  
>PF08085 Entericidin:  Entericidin EcnA/B family;  InterPro: IPR012556   This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing .; GO: 0009636 response to toxin, 0016020 membrane
Probab=79.93  E-value=0.37  Score=22.83  Aligned_cols=21  Identities=38%  Similarity=0.673  Sum_probs=14.1

Q ss_pred             CCHH-HHHHHHHHHHHHHCCCC
Q ss_conf             9135-88999999877630147
Q T0571             1 MKKN-LAYIGLVLLILTWTSCE   21 (344)
Q Consensus         1 MKk~-~~~l~l~~l~~l~tSC~   21 (344)
                      |||. +..++++++++.+++|+
T Consensus         1 Mkk~~~~~~~~~~~~~~l~gCn   22 (42)
T PF08085_consen    1 MKKKILIILALLALALALAGCN   22 (42)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9558999999999999880026


No 4  
>PF02402 Lysis_col:  Lysis protein;  InterPro: IPR003059   The DNA sequence of the entire colicin E2 operon has been determined . The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells . A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB . Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C-terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively .    Sequence similarities between colicins E2, A and E1  are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13  immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides . Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase . The mature ColE2 lysis protein is located in the cell envelope . ; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=73.92  E-value=0.28  Score=23.74  Aligned_cols=21  Identities=43%  Similarity=0.895  Sum_probs=14.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9135889999998776301477
Q T0571             1 MKKNLAYIGLVLLILTWTSCES   22 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n   22 (344)
                      |||++ ++.++.+.+++++|+-
T Consensus         1 MkKi~-~~~i~~~~~~L~aCQa   21 (46)
T PF02402_consen    1 MKKIL-FIGILLLTMLLAACQA   21 (46)
T ss_pred             CCEEE-EEHHHHHHHHHHHHHH
T ss_conf             94787-7389999999987201


No 5  
>PF01441 Lipoprotein_6:  Lipoprotein This Pfam family is a subset of the Prosite family.;  InterPro: IPR001800   Members of this family are lipoproteins that are probably involved in evasion of the host immune system by pathogens . They are predominantly found in the Spirochaetaceae.; GO: 0006952 defense response, 0009279 cell outer membrane; PDB: 1f1m_C 1g5z_A 2ga0_E 1yjg_E 1ggq_C.
Probab=73.58  E-value=0.28  Score=23.75  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=15.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9135889999998776301477655
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSDN   25 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e~   25 (344)
                      |||+-+-. +++.+|+|.||+|.-.
T Consensus         1 Mkk~tlSa-IlMtLflfisCNNsG~   24 (210)
T PF01441_consen    1 MKKNTLSA-ILMTLFLFISCNNSGK   24 (210)
T ss_dssp             -------------------------
T ss_pred             CCHHHHHH-HHHHHHHHHHCCCCCC
T ss_conf             95137999-9999999996378887


No 6  
>PF07901 DUF1672:  Protein of unknown function (DUF1672);  InterPro: IPR012873   This family is composed of hypothetical bacterial proteins of unknown function. 
Probab=73.40  E-value=0.73  Score=20.80  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=15.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9135889999998776301477655
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSDN   25 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e~   25 (344)
                      |||++.  .|+++++++++|.+-..
T Consensus         1 M~K~i~--~ll~~~lLLgGCs~m~~   23 (304)
T PF07901_consen    1 MKKRII--SLLAATLLLGGCSNMNE   23 (304)
T ss_pred             CHHHHH--HHHHHHHHHCCCCCCCC
T ss_conf             914899--99999999744446760


No 7  
>PF12245 DUF3607:  Protein of unknown function (DUF3607)
Probab=68.59  E-value=2.2  Score=17.43  Aligned_cols=80  Identities=18%  Similarity=0.181  Sum_probs=34.8

Q ss_pred             EEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEECHHHHH----HHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEE
Q ss_conf             25541057734799999985166777547999987658987----65211118666885864166367507974776257
Q T0571            52 EFVDNTLDNQHKMVIKAAWGGGYTNRNNVVINFKVDESLCD----NLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMA  127 (344)
Q Consensus        52 ~~~~~~~~~~~~~~i~v~vsgs~~~~~dv~V~i~vD~slL~----~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~  127 (344)
                      +.+.....-+....++|+.++....=..++-++.++...+.    ++|-+  +..--.|+++.|++-.+.+.+ +|..++
T Consensus        51 i~~~lssGLDRk~kisV~rs~g~~~~st~ts~~~~a~d~it~~G~eyYGk--~ltlPal~eG~ytl~~eiLd~-~g~~V~  127 (724)
T PF12245_consen   51 ITFALSSGLDRKVKISVTRSSGTLMVSTVTSHVLVADDRITADGSEYYGK--ELTLPALGEGTYTLKAEILDS-DGNVVQ  127 (724)
T ss_pred             EEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEEEEEEEECCCCCCCC--EEECCCCCCCCEEEEEEEECC-CCCEEE
T ss_conf             69999615553179999955985999851330787613785078420051--640244688727999988616-887787


Q ss_pred             EEEEEEE
Q ss_conf             6679984
Q T0571           128 GVEVQLT  134 (344)
Q Consensus       128 ~v~i~~~  134 (344)
                      .-+..|.
T Consensus       128 t~~ypl~  134 (724)
T PF12245_consen  128 TYSYPLT  134 (724)
T ss_pred             EEEEEEE
T ss_conf             6567689


No 8  
>PF03160 Calx-beta:  Calx-beta domain;  InterPro: IPR003644   The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet , .; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 2fws_A 3gin_B 2dpk_A 3e9u_A 2fwu_A 2qvm_A 2qvk_A 3fq4_B 3fso_A 3h6a_B ....
Probab=65.00  E-value=2.6  Score=16.95  Aligned_cols=75  Identities=17%  Similarity=0.318  Sum_probs=45.6

Q ss_pred             CCEEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCC
Q ss_conf             73479999998516677754799998765898765211118666885864166367507974776257667998412156
Q T0571            60 NQHKMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFA  139 (344)
Q Consensus        60 ~~~~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~  139 (344)
                      +.....+.+..+|. .....++|.+..-+.      .+..+.+|        ...+.++++++|+..+.+.|.+.+..  
T Consensus        26 ~~~~~~~~V~r~~~-~~~~~v~V~~~t~~g------tA~~g~Dy--------~~~~~~v~F~~ge~~~~i~v~i~dD~--   88 (101)
T PF03160_consen   26 EDGTVTVTVVRTGG-TTSGPVTVNYSTSDG------TATAGSDY--------TPVSGTVTFAPGETSKTITVPIIDDN--   88 (101)
T ss_dssp             T--EEEEEEEEES---TTSEEEEEEEEE-S------SS-TTTTB--------E-----EEE-TT-EEEEEEEEB---S--
T ss_pred             CCEEEEEEEEEEEE-CCCEEEEEEEEEECC------CCCCCCCC--------CCCCEEEEECCCCCEEEEEEEEECCC--
T ss_conf             98099999999411-588699999999788------53021676--------50340899939982989999995899--


Q ss_pred             CCCCCCCEEEEEE
Q ss_conf             6667787258899
Q T0571           140 DEKSISENYVIPL  152 (344)
Q Consensus       140 ~~l~~~~~YvLPl  152 (344)
                       ..+.++.+.|=|
T Consensus        89 -~~E~~E~f~v~L  100 (101)
T PF03160_consen   89 -VPEGDETFTVQL  100 (101)
T ss_dssp             -STTSSEEEEEEE
T ss_pred             -CCCCCEEEEEEE
T ss_conf             -855865899998


No 9  
>PF03304 Mlp:  Mlp lipoprotein family;  InterPro: IPR004983    The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species . This family were previously known as 2.9 lipoprotein genes . These surface expressed genes may represent new candidate vaccinogens for Lyme disease . Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=64.55  E-value=1.2  Score=19.27  Aligned_cols=22  Identities=36%  Similarity=0.523  Sum_probs=12.3

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             913588999999877630147765
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSD   24 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e   24 (344)
                      ||.+.++  ++.+++++.||+..+
T Consensus         1 mKiinil--fcl~lllL~~Cn~nd   22 (181)
T PF03304_consen    1 MKIINIL--FCLFLLLLNSCNSND   22 (181)
T ss_pred             CCEEHHH--HHHHHHHHHCCCCCC
T ss_conf             9440589--999999994767688


No 10 
>PF06085 Rz1:  Lipoprotein Rz1 precursor;  InterPro: IPR010346   This family consists of several bacteria and phage lipoprotein Rz1 precursors. Rz1 is a proline-rich lipoprotein from bacteriophage lambda, which is known to have fusogenic properties. Rz1-induced liposome fusion is thought to be mediated primarily by the generation of local perturbation in the bilayer lipid membrane and to a lesser extent by electrostatic forces .; GO: 0019064 viral envelope fusion with host membrane, 0019867 outer membrane
Probab=61.65  E-value=1.8  Score=18.07  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=18.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             91358899999987763014776
Q T0571             1 MKKNLAYIGLVLLILTWTSCESS   23 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~   23 (344)
                      |+++...+..+++.+.++||...
T Consensus         1 Mr~l~~~l~~~~~~L~lsaC~S~   23 (59)
T PF06085_consen    1 MRKLKMLLCALALPLALSACSSK   23 (59)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             90389999999999999871589


No 11 
>PF06291 Lambda_Bor:  Bor protein;  InterPro: IPR010438   This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis .
Probab=61.40  E-value=1.5  Score=18.54  Aligned_cols=19  Identities=42%  Similarity=0.492  Sum_probs=11.9

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9135889999998776301477
Q T0571             1 MKKNLAYIGLVLLILTWTSCES   22 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n   22 (344)
                      |||.++.+++   ++++++|..
T Consensus         1 mkk~ll~~~l---~llltgCa~   19 (97)
T PF06291_consen    1 MKKILLAAAL---ALLLTGCAQ   19 (97)
T ss_pred             CHHHHHHHHH---HHHHCCCCE
T ss_conf             9004999999---999645663


No 12 
>PF07273 DUF1439:  Protein of unknown function (DUF1439);  InterPro: IPR010835   This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.; PDB: 3eyr_B.
Probab=58.01  E-value=0.9  Score=20.16  Aligned_cols=20  Identities=45%  Similarity=0.522  Sum_probs=14.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9135889999998776301477
Q T0571             1 MKKNLAYIGLVLLILTWTSCES   22 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n   22 (344)
                      ||+.+.  +++++++++++|+.
T Consensus         1 Mk~~~~--~~l~~~~~L~gC~~   20 (177)
T PF07273_consen    1 MKKLLL--LALILALLLTGCAS   20 (177)
T ss_dssp             --------------------CH
T ss_pred             CCHHHH--HHHHHHHHHHCCCC
T ss_conf             926999--99999999861255


No 13 
>PF10566 Glyco_hydro_97:  Glycoside hydrolase 97  ; PDB: 2jkp_A 2zq0_A 2jke_B 2d73_B 2jka_B.
Probab=57.37  E-value=3.5  Score=16.05  Aligned_cols=22  Identities=14%  Similarity=0.348  Sum_probs=11.9

Q ss_pred             EEEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf             66799841215666677872588999
Q T0571           128 GVEVQLTDDFFADEKSISENYVIPLL  153 (344)
Q Consensus       128 ~v~i~~~~~~~~~~l~~~~~YvLPl~  153 (344)
                      .+.|.|.  .+.|++.  =.|.+|-.
T Consensus       121 ~~~l~fR--vyddGvA--fRY~~p~~  142 (643)
T PF10566_consen  121 RLNLEFR--VYDDGVA--FRYEFPQQ  142 (643)
T ss_dssp             EEEEEEE--E---------EEEE--B
T ss_pred             EEEEEEE--ECCCCEE--EEEEECCC
T ss_conf             3899999--9069879--99997798


No 14 
>PF10671 TcpQ:  Toxin co-regulated pilus biosynthesis protein Q
Probab=55.70  E-value=1.3  Score=19.01  Aligned_cols=19  Identities=42%  Similarity=0.681  Sum_probs=11.9

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9135889999998776301477
Q T0571             1 MKKNLAYIGLVLLILTWTSCES   22 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n   22 (344)
                      |||+++   ++.+++++++|.-
T Consensus         1 ~kkn~i---~~~~~i~lsGcs~   19 (169)
T PF10671_consen    1 MKKNLI---AITLAIMLSGCSS   19 (169)
T ss_pred             CCCCEE---HHHHHHHHCCCCC
T ss_conf             974030---3778988426333


No 15 
>PF01298 Lipoprotein_5:  Transferrin binding protein-like solute binding protein;  InterPro: IPR001677   Bacterial transferrin binding proteins act as transferrin receptors and are required for transferrin utilisation. Transferrins are iron-binding glycoproteins that control the level of free iron in biological fluids. ; GO: 0004998 transferrin receptor activity, 0016020 membrane
Probab=54.60  E-value=1.8  Score=18.07  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=14.2

Q ss_pred             CCHH-HHHHHHHHHHHHHCCCC
Q ss_conf             9135-88999999877630147
Q T0571             1 MKKN-LAYIGLVLLILTWTSCE   21 (344)
Q Consensus         1 MKk~-~~~l~l~~l~~l~tSC~   21 (344)
                      |++. +...+|+++++||+||.
T Consensus         1 M~~~~~~~~~~~l~~~lLsACs   22 (593)
T PF01298_consen    1 MNNPPLNQSAIALAAFLLSACS   22 (593)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC
T ss_conf             9865552558999999998734


No 16 
>PF02030 Lipoprotein_8:  Hypothetical lipoprotein (MG045 family);  InterPro: IPR000044 Mycoplasma genitalium has the smallest known genome of any free-living organism. Its complete genome sequence has been determined by whole-genome random sequencing and assembly . Only 470 putative coding regions were identified, including genes for DNA replication, transcription and translation, DNA repair, cellular transport and energy metabolism . A hypothetical protein from the MG045 gene  has a homologue of similarly unknown function in Mycoplasma pneumoniae .; GO: 0016020 membrane
Probab=50.39  E-value=3.9  Score=15.68  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=14.0

Q ss_pred             CCHHHHHHHHHHH---HHHHCCCCCCC
Q ss_conf             9135889999998---77630147765
Q T0571             1 MKKNLAYIGLVLL---ILTWTSCESSD   24 (344)
Q Consensus         1 MKk~~~~l~l~~l---~~l~tSC~n~e   24 (344)
                      |||+..++.+++.   ..+++||.+..
T Consensus         1 mk~~~k~~~~~~~l~~~~~ltac~~~~   27 (493)
T PF02030_consen    1 MKKQKKFLFSLIGLTFSSILTACSKNN   27 (493)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             940467899999999988876445586


No 17 
>PF08139 LPAM_1:  Prokaryotic membrane lipoprotein lipid attachment site;  InterPro: IPR012640   This family consists of the homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection .
Probab=49.42  E-value=3.2  Score=16.26  Aligned_cols=18  Identities=33%  Similarity=0.626  Sum_probs=9.8

Q ss_pred             CHHHHHHHHHHHHHHHCCCCC
Q ss_conf             135889999998776301477
Q T0571             2 KKNLAYIGLVLLILTWTSCES   22 (344)
Q Consensus         2 Kk~~~~l~l~~l~~l~tSC~n   22 (344)
                      || +  +.++.+++.+++|.+
T Consensus         9 Kk-i--l~~~~a~~~LaGCss   26 (26)
T PF08139_consen    9 KK-I--LFLLLALFMLAGCSS   26 (26)
T ss_pred             HH-H--HHHHHHHHHHHHCCC
T ss_conf             99-9--999999999833149


No 18 
>PF11153 DUF2931:  Protein of unknown function (DUF2931)
Probab=48.68  E-value=4.7  Score=15.12  Aligned_cols=16  Identities=6%  Similarity=-0.045  Sum_probs=10.0

Q ss_pred             CCCCCCEEEEEEEEEC
Q ss_conf             6677872588999841
Q T0571           141 EKSISENYVIPLLMTN  156 (344)
Q Consensus       141 ~l~~~~~YvLPl~I~~  156 (344)
                      ++...+.|..=+.|-.
T Consensus       105 Sl~DkK~Y~~~i~ip~  120 (216)
T PF11153_consen  105 SLIDKKFYETKIDIPE  120 (216)
T ss_pred             ECCCCCEEEEEEECCH
T ss_conf             8135517899998799


No 19 
>PF07172 GRP:  Glycine rich protein family;  InterPro: IPR010800   This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses.
Probab=48.07  E-value=3.6  Score=15.94  Aligned_cols=21  Identities=33%  Similarity=0.475  Sum_probs=10.2

Q ss_pred             CC-HHHHHHHHHHHHHHHCCCC
Q ss_conf             91-3588999999877630147
Q T0571             1 MK-KNLAYIGLVLLILTWTSCE   21 (344)
Q Consensus         1 MK-k~~~~l~l~~l~~l~tSC~   21 (344)
                      |- |.+++|+|+++++++.|++
T Consensus         1 M~sk~~llL~lllA~vlliss~   22 (95)
T PF07172_consen    1 MASKAFLLLGLLLAAVLLISSE   22 (95)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9247999999999999999874


No 20 
>PF06474 MLTD_N:  MLTD_N;  InterPro: IPR010511   This entry comprises the N-terminal domain of membrane-bound lytic murein transglycosylase D  .
Probab=47.75  E-value=3.6  Score=15.97  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=11.8

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9135889999998776301477655
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSDN   25 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e~   25 (344)
                      ||-.    ++++++++++||+....
T Consensus         1 m~~~----~~l~~~llLaGCqs~~~   21 (95)
T PF06474_consen    1 MRFL----AVLALALLLAGCQSTPQ   21 (95)
T ss_pred             CHHH----HHHHHHHHHHHCCCCCC
T ss_conf             9299----99999999984679999


No 21 
>PF03207 OspD:  Borrelia outer surface protein D (OspD);  InterPro: IPR004894  This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=45.94  E-value=4.6  Score=15.17  Aligned_cols=24  Identities=33%  Similarity=0.431  Sum_probs=16.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             913588999999877630147765
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSD   24 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e   24 (344)
                      |||.+.++.+-+++++-.||.-+.
T Consensus         1 mkklikill~slflllsisc~hdk   24 (254)
T PF03207_consen    1 MKKLIKILLLSLFLLLSISCVHDK   24 (254)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             916999999999999863212423


No 22 
>PF11810 DUF3332:  Domain of unknown function (DUF3332)
Probab=45.09  E-value=4.8  Score=15.07  Aligned_cols=19  Identities=32%  Similarity=0.524  Sum_probs=12.1

Q ss_pred             CHHHHHHHHHHHHHHHCCC
Q ss_conf             1358899999987763014
Q T0571             2 KKNLAYIGLVLLILTWTSC   20 (344)
Q Consensus         2 Kk~~~~l~l~~l~~l~tSC   20 (344)
                      |+....+++++++++|+||
T Consensus         2 k~~~~~~~~~~~~~~lsgC   20 (176)
T PF11810_consen    2 KKILAAVAILLGSVSLSGC   20 (176)
T ss_pred             CHHHHHHHHHHHHHHHCCC
T ss_conf             1369999999999985234


No 23 
>PF09160 FimH_man-bind:  FimH, mannose binding;  InterPro: IPR015243   This domain adopts a secondary structure consisting of a beta sandwich, with nine strands arranged in two sheets in a Greek key topology. It is predominantly found in bacterial mannose-specific adhesins, and is capable of binding to D-mannose . ; PDB: 2vco_B 1klf_L 1kiu_P 1uwf_A 1qun_L 1tr7_A.
Probab=44.95  E-value=5.3  Score=14.74  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=21.6

Q ss_pred             CCEEEECCCCCEEECCC---CEEECCCCEEEEEEEE
Q ss_conf             86668858641663675---0797477625766799
Q T0571           100 DQPLVPMPASYYTLASD---RIAIPKGQIMAGVEVQ  132 (344)
Q Consensus       100 ~t~Y~~LP~~~Ysl~~~---~v~I~aGe~~~~v~i~  132 (344)
                      +..|++||...|=-+-.   -+.|++|+..|.+.+.
T Consensus        95 ~~~~~p~p~klYLtp~~~agGv~I~~G~~iAtl~m~  130 (150)
T PF09160_consen   95 DGNYKPWPAKLYLTPISAAGGVVIKKGELIATLNMH  130 (150)
T ss_dssp             SSS-EE--EEEEEEESTT-----B----EEEEEEEE
T ss_pred             CCCCCCCCEEEEEEECCCCCCEEEECCCEEEEEEEE
T ss_conf             798466546899975487885898379889999999


No 24 
>PF12099 DUF3575:  Protein of unknown function (DUF3575)
Probab=44.91  E-value=5.3  Score=14.73  Aligned_cols=19  Identities=37%  Similarity=0.345  Sum_probs=9.5

Q ss_pred             CCHHHHHHHHHHHHHHHCCC
Q ss_conf             91358899999987763014
Q T0571             1 MKKNLAYIGLVLLILTWTSC   20 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC   20 (344)
                      |||+.+++ +++++++.+++
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~   19 (189)
T PF12099_consen    1 MKKIRFLF-LLLLLFCTSSP   19 (189)
T ss_pred             CCEEEHHH-HHHHHHHHHCC
T ss_conf             93530459-99999997535


No 25 
>PF11839 DUF3359:  Protein of unknown function (DUF3359)
Probab=44.71  E-value=4.6  Score=15.16  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=15.1

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9135889999998776301477655
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSDN   25 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e~   25 (344)
                      ||+.+ +-++.+.++++.+|-...+
T Consensus         1 M~~~l-~s~~~~~~~L~~GCAs~s~   24 (96)
T PF11839_consen    1 MKKLL-ISALALAALLAAGCASTSD   24 (96)
T ss_pred             CCHHH-HHHHHHHHHHHHHCCCCCH
T ss_conf             90599-9999999999857268858


No 26 
>PF12092 DUF3568:  Protein of unknown function (DUF3568)
Probab=42.90  E-value=5.2  Score=14.82  Aligned_cols=20  Identities=30%  Similarity=0.285  Sum_probs=13.2

Q ss_pred             CHHHHHHHHHHHHHHHCCCC
Q ss_conf             13588999999877630147
Q T0571             2 KKNLAYIGLVLLILTWTSCE   21 (344)
Q Consensus         2 Kk~~~~l~l~~l~~l~tSC~   21 (344)
                      ||.+..+.+.++++.++||.
T Consensus         1 kk~~~~~l~~~~~l~l~sC~   20 (131)
T PF12092_consen    1 KKLLLATLIAASALSLSSCG   20 (131)
T ss_pred             CCHHHHHHHHHHHHHHCCCH
T ss_conf             91289999999999871430


No 27 
>PF03978 Borrelia_REV:  Borrelia burgdorferi REV protein;  InterPro: IPR007126    This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli .  
Probab=41.31  E-value=4  Score=15.61  Aligned_cols=23  Identities=17%  Similarity=0.288  Sum_probs=13.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             91358899999987763014776
Q T0571             1 MKKNLAYIGLVLLILTWTSCESS   23 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~   23 (344)
                      ||++.++-.++++++...||+..
T Consensus         1 MknkNI~KLfFvsmlfvmaCk~y   23 (160)
T PF03978_consen    1 MKNKNIFKLFFVSMLFVMACKAY   23 (160)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             97400999999999999999999


No 28 
>PF06551 DUF1120:  Protein of unknown function (DUF1120);  InterPro: IPR010546   This family consists of several bacterial proteins, at least one of which is involved in enzyme induction following nitrogen deprivation. The exact function of this family is unknown
Probab=40.70  E-value=6.2  Score=14.30  Aligned_cols=19  Identities=32%  Similarity=0.235  Sum_probs=10.3

Q ss_pred             CCHHHHHHHHHHHHHHHCCC
Q ss_conf             91358899999987763014
Q T0571             1 MKKNLAYIGLVLLILTWTSC   20 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC   20 (344)
                      |||.++...+++.+ ++.++
T Consensus         1 MKK~l~~~~l~a~l-~~~~~   19 (145)
T PF06551_consen    1 MKKNLLATLLLASL-LLLAS   19 (145)
T ss_pred             CCHHHHHHHHHHHH-HHHHC
T ss_conf             93679999999999-98602


No 29 
>PF06788 UPF0257:  Uncharacterised protein family (UPF0257);  InterPro: IPR010646   This is a group of proteins of unknown function.
Probab=40.09  E-value=5  Score=14.94  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=14.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             91358899999987763014776556
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSDNE   26 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e~~   26 (344)
                      ||+.   +.+.++++++++|++....
T Consensus         1 ~~~~---~~~~~l~~~l~~cd~~~~~   23 (236)
T PF06788_consen    1 MKKQ---LLLCLLALLLAGCDNASAP   23 (236)
T ss_pred             CCEE---EHHHHHHHHHHHCCCCCCH
T ss_conf             9605---4589999977641254511


No 30 
>PF09403 FadA:  Adhesion protein FadA; PDB: 3etz_A 3etx_C 2gl2_A 3ety_A 3etw_A.
Probab=37.29  E-value=2.9  Score=16.64  Aligned_cols=20  Identities=35%  Similarity=0.308  Sum_probs=10.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCC
Q ss_conf             91358899999987763014
Q T0571             1 MKKNLAYIGLVLLILTWTSC   20 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC   20 (344)
                      |||+++..++++.+++|++-
T Consensus         1 MKKi~L~~ml~lss~sfAa~   20 (126)
T PF09403_consen    1 MKKILLCGMLLLSSLSFAAT   20 (126)
T ss_dssp             --------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             90589999999999997622


No 31 
>PF04449 Fimbrial_CS1:  CS1 type fimbrial major subunit;  InterPro: IPR007540 Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia . The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown . A member of this family has also been identified in Salmonella typhi and Salmonella enterica .; GO: 0009289 fimbrium
Probab=35.76  E-value=7.3  Score=13.78  Aligned_cols=14  Identities=14%  Similarity=0.244  Sum_probs=6.9

Q ss_pred             CCCEEEEEEECHHH
Q ss_conf             75479999876589
Q T0571            77 RNNVVINFKVDESL   90 (344)
Q Consensus        77 ~~dv~V~i~vD~sl   90 (344)
                      .+++.|++.-++.|
T Consensus        54 ~k~v~v~L~~~~~L   67 (143)
T PF04449_consen   54 SKDVNVKLANPPKL   67 (143)
T ss_pred             CCCEEEEEECCHHH
T ss_conf             76579998089656


No 32 
>PF03032 Brevenin:  Brevenin/esculentin/gaegurin/rugosin family;  InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defense mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=34.53  E-value=6.1  Score=14.35  Aligned_cols=27  Identities=22%  Similarity=0.333  Sum_probs=14.3

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9135889999998776301477655656
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSDNEFP   28 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e~~~e   28 (344)
                      |||-+.++.+ +-++.++-|+.....++
T Consensus         3 lKKSLlLlfF-LG~islSlCeeer~adE   29 (46)
T PF03032_consen    3 LKKSLLLLFF-LGTISLSLCEEERDADE   29 (46)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHCCCCH
T ss_conf             2588999999-98721167777604641


No 33 
>PF01203 GSPII_N:  Bacterial type II secretion system protein N;  InterPro: IPR000645 The secretion pathway (GSP) for the export of proteins (also called the type II pathway)  requires a number of protein components. One of them is known as the 'N' protein and has been sequenced in a variety of bacteria such as Aeromonas hydrophila (gene exeN); Erwinia carotovora (gene outN); Klebsiella pneumoniae (gene pulN); or Vibrio cholerae (gene epsN). The size of the 'N' protein is around 250 amino acids. It apparently contains a single transmembrane domain located in the N-terminal section. The short N-terminal domain is predicted to be cytoplasmic and the large C-terminal domain periplasmic.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex
Probab=33.94  E-value=7.8  Score=13.59  Aligned_cols=15  Identities=40%  Similarity=0.603  Sum_probs=9.6

Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             913588999999877
Q T0571             1 MKKNLAYIGLVLLIL   15 (344)
Q Consensus         1 MKk~~~~l~l~~l~~   15 (344)
                      ||+++.++.++++++
T Consensus         1 Mkr~~~~~~~~~~~~   15 (252)
T PF01203_consen    1 MKRRILWILLFLLAY   15 (252)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             932499999999999


No 34 
>PF06649 DUF1161:  Protein of unknown function (DUF1161);  InterPro: IPR010595   This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=31.94  E-value=7.6  Score=13.67  Aligned_cols=27  Identities=41%  Similarity=0.541  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHHHH-HH---CCCCCCCCCC
Q ss_conf             913588999999877-63---0147765565
Q T0571             1 MKKNLAYIGLVLLIL-TW---TSCESSDNEF   27 (344)
Q Consensus         1 MKk~~~~l~l~~l~~-l~---tSC~n~e~~~   27 (344)
                      |||.++..+|++++. .+   .||+.=..+.
T Consensus         1 Mkk~~l~~~l~~la~~alAA~~sCE~lk~eI   31 (75)
T PF06649_consen    1 MKKFLLAVALLLLAAPALAAPKSCEELKAEI   31 (75)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             9356999999998564541558889999999


No 35 
>PF04507 DUF576:  Protein of unknown function, DUF576;  InterPro: IPR007595 This family contains several uncharacterised staphylococcal proteins.
Probab=31.78  E-value=8.4  Score=13.35  Aligned_cols=21  Identities=38%  Similarity=0.585  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHHHHHHCCCCC
Q ss_conf             135889999998776301477
Q T0571             2 KKNLAYIGLVLLILTWTSCES   22 (344)
Q Consensus         2 Kk~~~~l~l~~l~~l~tSC~n   22 (344)
                      ||..++++++.+++++++|..
T Consensus         5 kkl~l~is~liLii~I~Gcg~   25 (257)
T PF04507_consen    5 KKLALYISLLILIIFIGGCGI   25 (257)
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
T ss_conf             667999999999998831345


No 36 
>PF11254 DUF3053:  Protein of unknown function (DUF3053)
Probab=30.80  E-value=8.7  Score=13.24  Aligned_cols=18  Identities=17%  Similarity=0.488  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHCCCCCCCC
Q ss_conf             999998776301477655
Q T0571             8 IGLVLLILTWTSCESSDN   25 (344)
Q Consensus         8 l~l~~l~~l~tSC~n~e~   25 (344)
                      ++.+++.+.+++|.|.|.
T Consensus         7 l~al~~vl~LaGC~dkE~   24 (229)
T PF11254_consen    7 LLALLMVLQLAGCGDKEP   24 (229)
T ss_pred             HHHHHHHHHHHHCCCCCH
T ss_conf             999999999831479977


No 37 
>PF09716 ETRAMP:  Malarial early transcribed membrane protein (ETRAMP)
Probab=28.80  E-value=9.4  Score=13.01  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=11.3

Q ss_pred             CC--HHHHHHHHHHHHHHHCCCCC
Q ss_conf             91--35889999998776301477
Q T0571             1 MK--KNLAYIGLVLLILTWTSCES   22 (344)
Q Consensus         1 MK--k~~~~l~l~~l~~l~tSC~n   22 (344)
                      ||  |.+++++++.+.-+|+-|-+
T Consensus         1 MKi~kv~~ff~~Ll~i~~l~p~~~   24 (84)
T PF09716_consen    1 MKISKVFYFFAFLLAINLLTPCLC   24 (84)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             937999999999999997537555


No 38 
>PF05628 Borrelia_P13:  Borrelia membrane protein P13;  InterPro: IPR008420 This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism .
Probab=28.49  E-value=8.3  Score=13.39  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=15.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             913588999999877630147
Q T0571             1 MKKNLAYIGLVLLILTWTSCE   21 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~   21 (344)
                      |||+++.+.++.+.+-..|-+
T Consensus         1 MkKi~~lilif~~t~qiFA~~   21 (167)
T PF05628_consen    1 MKKIFILILIFFLTIQIFAQK   21 (167)
T ss_pred             CCEEEHHHHHHHHHHHHHHCC
T ss_conf             962421478887787634124


No 39 
>PF10626 TraO:  Conjugative transposon protein TraO
Probab=26.91  E-value=7.6  Score=13.68  Aligned_cols=31  Identities=13%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             CCCCEEEEEEEEECCCCCCCCCCCCCEEECC
Q ss_conf             7787258899984156742124564023124
Q T0571           143 SISENYVIPLLMTNVQGADSILQGKPVVENP  173 (344)
Q Consensus       143 ~~~~~YvLPl~I~~~sg~~~i~~~~~~~~~p  173 (344)
                      |..++-.+-+=+...-|++++..|..++.+-
T Consensus       105 D~~K~vfl~~G~SaL~GYEtvN~g~~lL~DG  135 (193)
T PF10626_consen  105 DAGKNVFLSLGLSALAGYETVNWGDKLLYDG  135 (193)
T ss_pred             CCCCEEEEEECCCEEEEEEEECCCCCCCCCC
T ss_conf             6983799994320175556743786124684


No 40 
>PF07867 DUF1654:  Protein of unknown function (DUF1654);  InterPro: IPR012449   This family consists of proteins from the Pseudomonadaceae. 
Probab=26.85  E-value=10  Score=12.78  Aligned_cols=19  Identities=26%  Similarity=0.462  Sum_probs=15.2

Q ss_pred             CCEEEEEEECCCCCEEEEE
Q ss_conf             5408999997997389986
Q T0571           257 ISYTVRLSFAEDGSCTVHS  275 (344)
Q Consensus       257 ~~~~~~l~f~~~~~~ti~~  275 (344)
                      ....+.|+|++||.|+|.=
T Consensus        49 etdgi~l~~~dDGsV~i~W   67 (73)
T PF07867_consen   49 ETDGIDLTFNDDGSVRIRW   67 (73)
T ss_pred             CCCCCEEEECCCCEEEEEE
T ss_conf             4778057755898499998


No 41 
>PF06646 Mycoplasma_p37:  High affinity transport system protein p37;  InterPro: IPR010592   This family consists of several high affinity transport system protein p37 sequences, which are specific to Mycoplasma species. The p37 gene is part of an operon encoding two additional proteins, which are highly similar to components of the periplasmic binding-protein-dependent transport systems of Gram-negative bacteria. It has been suggested that p37 is part of a homologous, high-affinity transport system in Mycoplasma hyorhinis, a Gram-positive bacterium .; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3e78_A 3eki_A 3e79_A.
Probab=26.83  E-value=5.4  Score=14.68  Aligned_cols=26  Identities=23%  Similarity=0.133  Sum_probs=14.0

Q ss_pred             CCHHHHHHHHHH----HHHHHCCCCCCCCC
Q ss_conf             913588999999----87763014776556
Q T0571             1 MKKNLAYIGLVL----LILTWTSCESSDNE   26 (344)
Q Consensus         1 MKk~~~~l~l~~----l~~l~tSC~n~e~~   26 (344)
                      ||+++..+.++.    ..++++||....+.
T Consensus         1 ~k~k~~~~~~~~~i~~~~~~~~SC~~~~~~   30 (386)
T PF06646_consen    1 MKKKKKKLLSFSSIFSSSSIAISCGTQSNN   30 (386)
T ss_dssp             ------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             950035799999999889997741467676


No 42 
>PF09710 Trep_dent_lipo:  Treponema clustered lipoprotein (Trep_dent_lipo)
Probab=26.63  E-value=5.8  Score=14.48  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=15.5

Q ss_pred             CCCCCCEEEEEEEECCCCCCCEEEECCEEEEEC
Q ss_conf             122311147898512577664155311023312
Q T0571           181 WSILPQNFVLYAVKYVNPWHGEYLRRGIDHATV  213 (344)
Q Consensus       181 ~~~~~~~~~l~~v~~~N~ysg~Y~~~~~~~~~~  213 (344)
                      -+..++.|-.+++-|+   -|.++..|.+.+.+
T Consensus       206 ~~~~~~~y~~~vlDYV---kGNFTnSGyDEYiV  235 (394)
T PF09710_consen  206 KTHKYKQYDYKVLDYV---KGNFTNSGYDEYIV  235 (394)
T ss_pred             CCCCCCCCCEEEEEEE---CCCCCCCCCCEEEE
T ss_conf             0055576755742431---25656788643899


No 43 
>PF05540 Serpulina_VSP:  Serpulina hyodysenteriae variable surface protein;  InterPro: IPR008838 This family consists of several variable surface proteins from Brachyspira hyodysenteriae.
Probab=26.07  E-value=10  Score=12.69  Aligned_cols=18  Identities=6%  Similarity=0.032  Sum_probs=10.5

Q ss_pred             CCCCCEEEEEEEEECCCC
Q ss_conf             677872588999841567
Q T0571           142 KSISENYVIPLLMTNVQG  159 (344)
Q Consensus       142 l~~~~~YvLPl~I~~~sg  159 (344)
                      |.-.-.=++|++|.-.++
T Consensus       128 LNdnLRI~vPVqIaV~~~  145 (377)
T PF05540_consen  128 LNDNLRIAVPVQIAVGSD  145 (377)
T ss_pred             CCCCEEEEEEEEEEECCC
T ss_conf             056528998799997367


No 44 
>PF06030 DUF916:  Bacterial protein of unknown function (DUF916);  InterPro: IPR010317   This family consists of putative cell surface proteins, from Firmicutes, of unknown function. 
Probab=25.43  E-value=11  Score=12.61  Aligned_cols=82  Identities=5%  Similarity=0.197  Sum_probs=38.5

Q ss_pred             EEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEECHHHHHH----HHHHHCCCEEEECC---CCCEEECCCCEEECCCC
Q ss_conf             255410577347999999851667775479999876589876----52111186668858---64166367507974776
Q T0571            52 EFVDNTLDNQHKMVIKAAWGGGYTNRNNVVINFKVDESLCDN----LYFKDTDQPLVPMP---ASYYTLASDRIAIPKGQ  124 (344)
Q Consensus        52 ~~~~~~~~~~~~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~----~YN~~~~t~Y~~LP---~~~Ysl~~~~v~I~aGe  124 (344)
                      .|++....-..+..+.+.+  ....++.+++.+.+..+.-..    .|.......=.-|+   .++-+++..++++|+++
T Consensus        17 ~YFdL~~~P~q~qtl~v~v--~N~t~~~itv~v~~~~A~Tn~nG~idY~~~~~~~d~sl~~~~~~~v~~~~~~Vtl~~~~   94 (122)
T PF06030_consen   17 SYFDLKVKPGQTQTLQVRV--TNNTDKPITVKVSANNATTNDNGVIDYSPSTKKKDSSLKYPFSDLVKIPKEEVTLPANS   94 (122)
T ss_pred             CCEEEEECCCCEEEEEEEE--ECCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEECCCC
T ss_conf             7489996899959999999--92899968999997165756887899667887746434846799612688769989998


Q ss_pred             EEE-EEEEEEEE
Q ss_conf             257-66799841
Q T0571           125 IMA-GVEVQLTD  135 (344)
Q Consensus       125 ~~~-~v~i~~~~  135 (344)
                      ..- .+.|++..
T Consensus        95 sk~V~~~lk~P~  106 (122)
T PF06030_consen   95 SKTVTFTLKMPK  106 (122)
T ss_pred             EEEEEEEEECCC
T ss_conf             799999998688


No 45 
>PF03082 MAGSP:  Male accessory gland secretory protein;  InterPro: IPR004315 The accessory gland of male insects is a genital tissue that secretes many components of the ejaculatory fluid, some of which affect the female's receptivity to courtship and her rate of oviposition. The protein is expressed exclusively in the male accessory glands of adult Drosophila melanogaster. During copulation it is transferred to the female genital tract where it is rapidly altered .; GO: 0007618 mating, 0005576 extracellular region
Probab=24.26  E-value=11  Score=12.46  Aligned_cols=22  Identities=23%  Similarity=0.551  Sum_probs=17.8

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9135889999998776301477
Q T0571             1 MKKNLAYIGLVLLILTWTSCES   22 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n   22 (344)
                      |..++..-++++++|..++|+.
T Consensus         1 MNQILLCS~iLLllfaVAnC~~   22 (264)
T PF03082_consen    1 MNQILLCSAILLLLFAVANCDG   22 (264)
T ss_pred             CCEEHHHHHHHHHHHHHHHCCC
T ss_conf             9622006889999988761145


No 46 
>PF07996 T4SS:  Type IV secretion system proteins;  InterPro: IPR012991   Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.; PDB: 1r8i_A.
Probab=23.41  E-value=6.9  Score=13.96  Aligned_cols=20  Identities=30%  Similarity=0.373  Sum_probs=10.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCC
Q ss_conf             91358899999987763014
Q T0571             1 MKKNLAYIGLVLLILTWTSC   20 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC   20 (344)
                      |||+++.+++++++++.+.+
T Consensus         1 MKk~~~~~~~~~~l~~~~~a   20 (217)
T PF07996_consen    1 MKKKTLALALALALLMSSPA   20 (217)
T ss_dssp             --------------------
T ss_pred             CHHHHHHHHHHHHHHHCCHH
T ss_conf             91579999999999803355


No 47 
>PF05643 DUF799:  Putative bacterial lipoprotein (DUF799);  InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=22.61  E-value=12  Score=12.25  Aligned_cols=18  Identities=28%  Similarity=0.370  Sum_probs=10.1

Q ss_pred             CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             913588999999877630147
Q T0571             1 MKKNLAYIGLVLLILTWTSCE   21 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~   21 (344)
                      ||+.++   .++++++|++|.
T Consensus         1 ~k~~~~---~l~~~l~LsgCa   18 (215)
T PF05643_consen    1 MKPLLL---GLAALLLLSGCA   18 (215)
T ss_pred             CHHHHH---HHHHHHHHHHCC
T ss_conf             900599---999999996076


No 48 
>PF00820 Lipoprotein_1:  Borrelia lipoprotein The Pfam entry is a subset of this entry.;  InterPro: IPR001809 The ospA and ospB genes encode the major outer membrane proteins of the Lyme disease spirochaete Borrelia burgdorferi . The deduced gene products OspA and OspB, contain 273 and 296 residues respectively . The two Osp proteins show a high degree of sequence similarity, indicating a recent evolutionary event. Molecular analysis and sequence comparison of OspA and OspB with other proteins has revealed similarity to the signal peptides of prokaryotic lipoproteins , .; GO: 0009279 cell outer membrane; PDB: 3ckg_A 3cka_B 2fkg_A 2fkj_A 2pi3_O 2ol6_O 3ckf_A 2i5z_O 2hkd_A 1p4p_A ....
Probab=22.57  E-value=12  Score=12.24  Aligned_cols=104  Identities=16%  Similarity=0.187  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEEEE-----E----
Q ss_conf             9135889999998776301477655656511114888632332000122102554105773479999998-----5----
Q T0571             1 MKKNLAYIGLVLLILTWTSCESSDNEFPDFDYQTVYFANQYGLRTIELGESEFVDNTLDNQHKMVIKAAW-----G----   71 (344)
Q Consensus         1 MKk~~~~l~l~~l~~l~tSC~n~e~~~e~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~v-----s----   71 (344)
                      ||+++   .-+++.+.+.+|....-...+.  +.+-  ..-|..     ....+...-+.+..|.+.++|     .    
T Consensus         1 MkkYL---lG~~LilAliaC~Q~~ss~d~k--~s~~--~dLp~~-----~~V~vSKEKnkdGKY~L~AtVDklELKGtSD   68 (273)
T PF00820_consen    1 MKKYL---LGIGLILALIACKQNVSSLDEK--NSSS--VDLPGE-----MKVFVSKEKNKDGKYDLRATVDKLELKGTSD   68 (273)
T ss_dssp             ----------------------------SS--SEEE--EEE--------EEEEEESSE-----BEEEEEETTEEEB--BS
T ss_pred             CCEEH---HHHHHHHHHHHHHCCCCCCCCC--CCCC--CCCCCC-----EEEEEEECCCCCCCEEEEEEEEEEEEECCCC
T ss_conf             93301---4799999998760224465645--5621--048884-----3899982147787368999864478833224


Q ss_pred             ---------ECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEE
Q ss_conf             ---------16677754799998765898765211118666885864166367507974776257
Q T0571            72 ---------GGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMA  127 (344)
Q Consensus        72 ---------gs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~  127 (344)
                               |.++ ++ -.|++.+..+|-        .+.++.+.++. .+-+..++-+.|+...
T Consensus        69 KnnGSG~LEG~K~-Dk-SKvkltisdDL~--------~tt~E~fkedg-t~Vs~KV~~KdkS~TE  122 (273)
T PF00820_consen   69 KNNGSGTLEGVKA-DK-SKVKLTISDDLS--------TTTFETFKEDG-TLVSRKVTSKDKSSTE  122 (273)
T ss_dssp             S------BB---T-TS--EEEEEE-TT-----------EEEEEE------EEEEEEEETTSSEEE
T ss_pred             CCCCCCEEECCCC-CC-CEEEEEEECCCC--------CEEEEEECCCC-CEEEEEEEECCCCCCH
T ss_conf             7788530312117-76-567899922667--------30699983799-4986555605676303


No 49 
>PF11873 DUF3393:  Domain of unknown function (DUF3393)
Probab=22.56  E-value=10  Score=12.73  Aligned_cols=16  Identities=44%  Similarity=0.723  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHCCCCCC
Q ss_conf             9999987763014776
Q T0571             8 IGLVLLILTWTSCESS   23 (344)
Q Consensus         8 l~l~~l~~l~tSC~n~   23 (344)
                      +++++++++++||...
T Consensus         4 l~~~~~~llL~~Cs~~   19 (204)
T PF11873_consen    4 LILLLIILLLSSCSSE   19 (204)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             1999999999985775


No 50 
>PF06280 DUF1034:  Fn3-like domain (DUF1034);  InterPro: IPR010435   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 1xf1_A 3eif_A.
Probab=22.56  E-value=12  Score=12.24  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=18.1

Q ss_pred             CEEECCCCEEECCCCEEEEEEEEEE
Q ss_conf             1663675079747762576679984
Q T0571           110 YYTLASDRIAIPKGQIMAGVEVQLT  134 (344)
Q Consensus       110 ~Ysl~~~~v~I~aGe~~~~v~i~~~  134 (344)
                      ..+++..++++|||+... +.|+|+
T Consensus        56 ~~~~~~~~vTV~ag~s~~-v~vt~~   79 (112)
T PF06280_consen   56 SVTFSPNTVTVPAGGSKT-VTVTFT   79 (112)
T ss_dssp             EEE---EEEEE-TTEEEE-EEEEEE
T ss_pred             EEEECCCEEEECCCCEEE-EEEEEE
T ss_conf             666379849999999899-999997


No 51 
>PF06873 SerH:  Cell surface immobilisation antigen SerH;  InterPro: IPR009670   This family consists of several cell surface immobilisation antigen SerH proteins which seem to be specific to Tetrahymena thermophila. The SerH locus of T. thermophila is one of several paralogous loci with genes encoding variants of the major cell surface protein known as the immobilisation antigen (i-ag) .
Probab=22.33  E-value=12  Score=12.21  Aligned_cols=12  Identities=25%  Similarity=0.562  Sum_probs=7.8

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             913588999999
Q T0571             1 MKKNLAYIGLVL   12 (344)
Q Consensus         1 MKk~~~~l~l~~   12 (344)
                      ||.+++++.|+.
T Consensus         1 M~~k~lIi~Lii   12 (403)
T PF06873_consen    1 MQNKILIICLII   12 (403)
T ss_pred             CCCHHHHHHHHH
T ss_conf             960046899999


No 52 
>PF01514 YscJ_FliF:  Secretory protein of YscJ/FliF family;  InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins .; PDB: 1yj7_D.
Probab=22.10  E-value=7.6  Score=13.67  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=12.2

Q ss_pred             CCHHHHH-----HHHHHHHHHHCCCCC
Q ss_conf             9135889-----999998776301477
Q T0571             1 MKKNLAY-----IGLVLLILTWTSCES   22 (344)
Q Consensus         1 MKk~~~~-----l~l~~l~~l~tSC~n   22 (344)
                      |+|+..+     ++++++++++++|.+
T Consensus         1 ~~k~~ki~~~~vi~~~~~~~~~~~~~~   27 (206)
T PF01514_consen    1 MNKKQKIMAVAVIALLVALLLLSSCPD   27 (206)
T ss_dssp             -------------------------E-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             951478878999999999999966997


Done!