Query         T0571 ZP_02066433.1, Bacteroides ovatus ATCC 8483, 344 residues
Match_columns 344
No_of_seqs    153 out of 205
Neff          7.2 
Searched_HMMs 15564
Date          Fri Jun  4 14:32:34 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0571.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0571.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2dpka1 b.1.27.1 (A:370-502) S  30.1      12 0.00076   13.2   8.4   78   62-159    19-96  (133)
  2 d1m1ca_ e.42.1.1 (A:) L-A viru  29.6      12 0.00077   13.1   3.4   63  139-207   431-493 (651)
  3 d1uwfa1 b.2.3.2 (A:1-158) Mann  29.3      12 0.00078   13.1   3.4   13  156-168   113-125 (158)
  4 d2dpka1 b.1.27.1 (A:370-502) S  26.3      14 0.00088   12.7   5.0   82   60-161    17-98  (133)
  5 d1qbaa1 b.1.18.2 (A:781-885) B  19.4      16   0.001   12.2   0.6   42  110-155    36-82  (105)
  6 d1xova1 b.34.11.4 (A:181-314)   15.1      23  0.0015   11.1   5.6   74  228-310    48-121 (134)
  7 g1y43.1 b.29.1.20 (A:1-32,B:3-  14.1      25  0.0016   10.9   1.9   29   97-127    66-94  (203)
  8 d1m1ca_ e.42.1.1 (A:) L-A viru  13.5      26  0.0016   10.8   3.1   63  139-207   431-493 (651)
  9 d2fwua1 b.1.27.1 (A:501-657) S  12.4      27  0.0018   10.6   7.4   81   63-163    20-100 (157)
 10 d2ifra1 b.29.1.20 (A:1-206) Sc  12.4      27  0.0018   10.6   1.6   29   97-127    62-90  (206)

No 1  
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]} SCOP: d2fwsa1
Probab=30.07  E-value=12  Score=13.16  Aligned_cols=78  Identities=22%  Similarity=0.411  Sum_probs=45.4

Q ss_pred             EEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCCCC
Q ss_conf             47999999851667775479999876589876521111866688586416636750797477625766799841215666
Q T0571            62 HKMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFADE  141 (344)
Q Consensus        62 ~~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~~~  141 (344)
                      ....+.+..++.. ....+.|.+...+-.      +..+        ..|...+.++.+++|+....+.|.+.+.   +.
T Consensus        19 g~v~i~V~R~~g~-~~~~v~V~~~t~~gt------A~~~--------~D~~~~~g~v~F~~ge~~k~i~I~i~~D---~~   80 (133)
T d2dpka1          19 GTVALTIIRRGGD-LTNTVFVDFRTEDGT------ANAG--------SDYEFTEGTVVFKPGETQKEIRVGIIDD---DI   80 (133)
T ss_dssp             SEEEEEEEEESSC-TTSCEEEEEEEEESS------SCBT--------TTBCCCEEEEEECTTCCEEEEEEEBCCC---SS
T ss_pred             CEEEEEEEECCCC-CCCEEEEEEEEECCC------CCCC--------CCCCCCCCEEEECCCCEEEEEEEEEEEC---CC
T ss_conf             4899988865789-787599988872397------6567--------6340146408865987489988888657---86


Q ss_pred             CCCCCEEEEEEEEECCCC
Q ss_conf             677872588999841567
Q T0571           142 KSISENYVIPLLMTNVQG  159 (344)
Q Consensus       142 l~~~~~YvLPl~I~~~sg  159 (344)
                      .+.++.+.|=|  .+.++
T Consensus        81 ~E~~E~f~v~L--~~~~~   96 (133)
T d2dpka1          81 FEEDENFLVHL--SNVKV   96 (133)
T ss_dssp             CCCCEEEEEEE--EEEEE
T ss_pred             CCCCCEEEEEE--ECCCC
T ss_conf             67871799998--36336


No 2  
>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces cerevisiae virus L-A [TaxId: 11008]}
Probab=29.64  E-value=12  Score=13.11  Aligned_cols=63  Identities=16%  Similarity=0.174  Sum_probs=35.6

Q ss_pred             CCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECC
Q ss_conf             666677872588999841567421245640231243111211122311147898512577664155311
Q T0571           139 ADEKSISENYVIPLLMTNVQGADSILQGKPVVENPVLTNAGDWSILPQNFVLYAVKYVNPWHGEYLRRG  207 (344)
Q Consensus       139 ~~~l~~~~~YvLPl~I~~~sg~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~l~~v~~~N~ysg~Y~~~~  207 (344)
                      .+-++...+|..|+.+.+-.|+.+  .+-+++..--+.    +.--|--+-+-+++-.|+|+|.+....
T Consensus       431 p~Lve~~~t~~Vpvtv~E~~gy~i--vDn~vv~~g~Pf----~GsPym~~Pia~Fd~~npy~g~f~i~~  493 (651)
T d1m1ca_         431 PDLLEFDAVTQVPITVIEPAGYNI--VDDHLVVVGVPV----ACSPYMIFPVAAFDTANPYCGNFVIKA  493 (651)
T ss_dssp             GGGSCSSCEEEEECEECCCSCCCC--STTEEEEESCCC----CSCTTTTTTCCSSSSCCTTSSEEEECC
T ss_pred             CCCCCCCCEEEEEEEEEECCCCEE--ECCEEEEECCCC----CCCCEEEEEEECCCCCCCEECCEEECC
T ss_conf             010063635687888860788256--525688843455----678736884202789983021113056


No 3  
>d1uwfa1 b.2.3.2 (A:1-158) Mannose-specific adhesin FimH {Escherichia coli [TaxId: 562]}
Probab=29.33  E-value=12  Score=13.07  Aligned_cols=13  Identities=23%  Similarity=0.286  Sum_probs=6.1

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             1567421245640
Q T0571           156 NVQGADSILQGKP  168 (344)
Q Consensus       156 ~~sg~~~i~~~~~  168 (344)
                      +..++..|.+|..
T Consensus       113 ~~a~gV~I~~G~~  125 (158)
T d1uwfa1         113 SSAGGVAIKAGSL  125 (158)
T ss_dssp             TTCCEEEECTTCE
T ss_pred             CCCCCEEEECCCE
T ss_conf             9888679866988


No 4  
>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=26.34  E-value=14  Score=12.72  Aligned_cols=82  Identities=20%  Similarity=0.336  Sum_probs=45.5

Q ss_pred             CCEEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCC
Q ss_conf             73479999998516677754799998765898765211118666885864166367507974776257667998412156
Q T0571            60 NQHKMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFA  139 (344)
Q Consensus        60 ~~~~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~  139 (344)
                      +.....+.+..++.. ....+.|.+..-.-.      +..+        ..|...+-++++++|+....+.|.+.+..  
T Consensus        17 ~~g~v~v~V~r~~~~-~~~~v~V~~~t~~gt------A~~g--------~Dy~~~~g~i~F~~Ge~~~~i~V~i~~D~--   79 (133)
T d2dpka1          17 NCGTVALTIIRRGGD-LTNTVFVDFRTEDGT------ANAG--------SDYEFTEGTVVFKPGETQKEIRVGIIDDD--   79 (133)
T ss_dssp             TSSEEEEEEEEESSC-TTSCEEEEEEEEESS------SCBT--------TTBCCCEEEEEECTTCCEEEEEEEBCCCS--
T ss_pred             CCCEEEEEEEEECCC-CCCEEEEEEEECCCC------CCCC--------CEEECCCCEEEECCCCEEEEEEEEEECCC--
T ss_conf             883799999990788-696599999970896------5222--------00762377699789972999999998688--


Q ss_pred             CCCCCCCEEEEEEEEECCCCCC
Q ss_conf             6667787258899984156742
Q T0571           140 DEKSISENYVIPLLMTNVQGAD  161 (344)
Q Consensus       140 ~~l~~~~~YvLPl~I~~~sg~~  161 (344)
                       ..+.++..  -|+|.++++..
T Consensus        80 -~~E~~E~F--~v~L~~~~~~~   98 (133)
T d2dpka1          80 -IFEEDENF--LVHLSNVKVSS   98 (133)
T ss_dssp             -SCCCCEEE--EEEEEEEEECC
T ss_pred             -CCCCCEEE--EEEEECCCCCC
T ss_conf             -77688899--99998986775


No 5  
>d1qbaa1 b.1.18.2 (A:781-885) Bacterial chitobiase (N-acetyl-beta-glucoseaminidase), C-terminal domain {Serratia marcescens [TaxId: 615]}
Probab=19.42  E-value=16  Score=12.18  Aligned_cols=42  Identities=14%  Similarity=0.205  Sum_probs=25.3

Q ss_pred             CEEECCCCEEECCCCEEEE-----EEEEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf             1663675079747762576-----679984121566667787258899984
Q T0571           110 YYTLASDRIAIPKGQIMAG-----VEVQLTDDFFADEKSISENYVIPLLMT  155 (344)
Q Consensus       110 ~Ysl~~~~v~I~aGe~~~~-----v~i~~~~~~~~~~l~~~~~YvLPl~I~  155 (344)
                      .|.+|...+.|..|.....     +.|+.+    +|+-++-..|-.|+++.
T Consensus        36 ~yrlP~PGa~i~~g~L~~n~~~PGl~I~Yt----~DG~~p~~~y~~pv~~~   82 (105)
T d1qbaa1          36 AYRLPVPGARVAGGKLEANIALPGLGIEYS----TDGGKQWQRYDAKAKPA   82 (105)
T ss_dssp             CCCCCCCEEEEETTEEEEECSSTTSEEEEE----SSSSSSCEECCTTSCCB
T ss_pred             CCCCCCCCEEEECCEEEEEECCCCCEEEEE----ECCCCCCCCCCCCCCCC
T ss_conf             400799976998899999715799589999----56995680346754545


No 6  
>d1xova1 b.34.11.4 (A:181-314) Endolysin Ply, C-terminal domain {Bacteriophage Psa [TaxId: 171618]}
Probab=15.14  E-value=23  Score=11.11  Aligned_cols=74  Identities=19%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             ECCCEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf             12630588612122111122011101345540899999799738998668760210024772147774457853306899
Q T0571           228 ENDEVVNISTKSMKDNLLTLKTKDESGKDISYTVRLSFAEDGSCTVHSGSQNVVVSGSGKFVSKGEKNSLGGKDRNAIYL  307 (344)
Q Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~~~ti~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  307 (344)
                      ++|..+.+|..--..         ....+.+-.+.+.......+.|--|+..-.-+|..+++.-+.+.+|++-.+.-++|
T Consensus        48 indkl~y~yksfc~~---------~~kkdakgri~vriksakdlripvw~ntklnsgkikwy~p~tklswy~n~kgylel  118 (134)
T d1xova1          48 INDKLCYIYKSFCIS---------NGKKDAKGRIKVRIKSAKDLRIPVWNNTKLNSGKIKWYSPGTKLSWYDNKKGYLEL  118 (134)
T ss_dssp             ETTEEEEEEGGGEEE---------CCCCSTTCCEEEEECCTTTCCEEEESSTTCSSSSEEEECTTCEEEEECCSSSSEEE
T ss_pred             ECCEEEEEEHHHHHH---------CCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECCCCEEEEEECCCCEEEE
T ss_conf             376478875223322---------04534567125886012122124432630036506886699766787178725999


Q ss_pred             EEE
Q ss_conf             999
Q T0571           308 DYT  310 (344)
Q Consensus       308 ~Y~  310 (344)
                      .|.
T Consensus       119 wy~  121 (134)
T d1xova1         119 WYE  121 (134)
T ss_dssp             EET
T ss_pred             EEC
T ss_conf             982


No 7  
>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II {Aspergillus niger [TaxId: 5061]}
Probab=14.06  E-value=25  Score=10.92  Aligned_cols=29  Identities=21%  Similarity=0.265  Sum_probs=23.5

Q ss_pred             HHCCCEEEECCCCCEEECCCCEEECCCCEEE
Q ss_conf             1118666885864166367507974776257
Q T0571            97 KDTDQPLVPMPASYYTLASDRIAIPKGQIMA  127 (344)
Q Consensus        97 ~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~  127 (344)
                      ..++-+|+.+|+..|.|+  .+.|++|+...
T Consensus        66 ~sy~AW~EwyP~~a~~~~--~~~v~~GD~i~   94 (203)
T g1y43.1          66 TSYDAWYEWYPDYAYDFS--DITISEGDSIK   94 (203)
T ss_dssp             EEEEEEEEEETSCCEEET--TCCCCTTCEEE
T ss_pred             EEEEEEEEECCCCCCCCC--CCCCCCCCEEE
T ss_conf             989899998477765725--65288999999


No 8  
>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces cerevisiae virus L-A [TaxId: 11008]}
Probab=13.51  E-value=26  Score=10.82  Aligned_cols=63  Identities=19%  Similarity=0.241  Sum_probs=36.5

Q ss_pred             CCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECC
Q ss_conf             666677872588999841567421245640231243111211122311147898512577664155311
Q T0571           139 ADEKSISENYVIPLLMTNVQGADSILQGKPVVENPVLTNAGDWSILPQNFVLYAVKYVNPWHGEYLRRG  207 (344)
Q Consensus       139 ~~~l~~~~~YvLPl~I~~~sg~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~l~~v~~~N~ysg~Y~~~~  207 (344)
                      .+-++-+..|.+|+.+.+-.||++|...-..+--|-..      --|--+-+-++.-.|+|+|.+....
T Consensus       431 P~Ll~td~~~~Vp~~v~e~~gY~iidd~v~~~gvPf~g------sPy~~~pia~Fd~~npy~g~f~i~~  493 (651)
T d1m1ca_         431 PDLLEFDAVTQVPITVIEPAGYNIVDDHLVVVGVPVAC------SPYMIFPVAAFDTANPYCGNFVIKA  493 (651)
T ss_dssp             GGGSCSSCEEEEECEECCCSCCCCSTTEEEEESCCCCS------CTTTTTTCCSSSSCCTTSSEEEECC
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCC------CCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf             44003466336545861777640004743676676589------8644432242677886435301378


No 9  
>d2fwua1 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=12.42  E-value=27  Score=10.60  Aligned_cols=81  Identities=15%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             EEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEECCCCCEEECCCCEEECCCCEEEEEEEEEEECCCCCCC
Q ss_conf             79999998516677754799998765898765211118666885864166367507974776257667998412156666
Q T0571            63 KMVIKAAWGGGYTNRNNVVINFKVDESLCDNLYFKDTDQPLVPMPASYYTLASDRIAIPKGQIMAGVEVQLTDDFFADEK  142 (344)
Q Consensus        63 ~~~i~v~vsgs~~~~~dv~V~i~vD~slL~~~YN~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~~v~i~~~~~~~~~~l  142 (344)
                      ...+.|..++  .....++|.+..-+..      +.       .+...|...+-++++++|+..+.+.|.+.+..   ..
T Consensus        20 ~~~v~V~R~~--g~~g~v~V~~~t~~gt------A~-------~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~~D~---~~   81 (157)
T d2fwua1          20 IMEVKVLRTS--GARGNVIVPYKTIEGT------AR-------GGGEDFEDTCGELEFQNDEIVKTISVKVIDDE---EY   81 (157)
T ss_dssp             EEEEEEECCT--TCSSCEEEEEEEECTT------SC-------TTTTSEECCEEEEEECSSCCCCEEEEEECCCS---SC
T ss_pred             EEEEEEEEEC--CCCCEEEEEEEEECCC------CC-------CCCCCCCCCCCCEEECCCCEEEEEEEEECCCC---CC
T ss_conf             9999999847--9986699999984897------57-------76887451567589779953899972213788---74


Q ss_pred             CCCCEEEEEEEEECCCCCCCC
Q ss_conf             778725889998415674212
Q T0571           143 SISENYVIPLLMTNVQGADSI  163 (344)
Q Consensus       143 ~~~~~YvLPl~I~~~sg~~~i  163 (344)
                      +.++.+.|=|  .+.+++...
T Consensus        82 E~~E~F~v~L--~~p~~~~~~  100 (157)
T d2fwua1          82 EKNKTFFLEI--GEPRLVEMS  100 (157)
T ss_dssp             CCCEEEEEEE--CCCEESSCC
T ss_pred             CCCEEEEEEE--ECCCCCCCC
T ss_conf             6866999999--489776415


No 10 
>d2ifra1 b.29.1.20 (A:1-206) Scytalidopepsin B {Fungus (Scytalidium lignicola) [TaxId: 5539]}
Probab=12.40  E-value=27  Score=10.59  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=23.2

Q ss_pred             HHCCCEEEECCCCCEEECCCCEEECCCCEEE
Q ss_conf             1118666885864166367507974776257
Q T0571            97 KDTDQPLVPMPASYYTLASDRIAIPKGQIMA  127 (344)
Q Consensus        97 ~~~~t~Y~~LP~~~Ysl~~~~v~I~aGe~~~  127 (344)
                      ..++-+|+.+|+..|.|+  .+.|.+|+...
T Consensus        62 ~sy~AWyEwyP~~a~~~s--~~~v~~GD~i~   90 (206)
T d2ifra1          62 GTYDAWYEWYPEVSDDFS--GITISEGDSIQ   90 (206)
T ss_dssp             SCEEEEEEEESSCEEEC----CCCCTTCEEE
T ss_pred             EEEEEEEEECCCCCCCCC--CCCCCCCCEEE
T ss_conf             936788997377666615--53008999999


Done!