Query T0572 SuR18C, , 93 residues
Match_columns 93
No_of_seqs 101 out of 301
Neff 7.1
Searched_HMMs 22458
Date Fri Jun 4 14:26:17 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0572.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0572.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lyw_A YBBR family protein; st 97.8 5.8E-05 2.6E-09 41.7 6.9 78 10-90 3-85 (90)
2 2kps_A Uncharacterized protein 97.5 1.3E-05 5.9E-10 44.7 0.7 80 10-93 5-89 (98)
3 2kq1_A BH0266 protein; solutio 97.2 0.00092 4.1E-08 36.0 7.0 75 10-89 12-96 (119)
4 1feu_A 50S ribosomal protein L 7.8 1E+02 0.0045 12.0 6.2 74 11-89 97-175 (206)
5 2zjr_S 50S ribosomal protein L 7.3 1.1E+02 0.0048 11.9 4.9 73 11-89 93-172 (237)
6 2rh2_A Dihydrofolate reductase 7.2 1.1E+02 0.0049 11.8 1.7 22 21-43 34-55 (62)
7 1shs_A Small heat shock protei 4.3 1.7E+02 0.0075 10.9 7.4 69 4-75 46-114 (147)
8 3jyv_J 40S ribosomal protein S 3.1 1.1E+02 0.005 11.8 -1.4 45 12-56 45-89 (96)
9 2kfw_A FKBP-type peptidyl-prol 2.9 2.3E+02 0.01 10.3 1.7 60 8-73 3-63 (196)
10 3ljy_A Putative acyltransferas 2.9 2.4E+02 0.011 10.2 4.2 43 9-51 14-57 (243)
No 1
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A
Probab=97.77 E-value=5.8e-05 Score=41.68 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=55.3
Q ss_pred CEEEEEEEEEEECCCCCEEEEEEECCCEEEEEECHHHHCCCEEEEEEEEEECCCCCE-EE--EEEECCCC--EEECCCEE
Q ss_conf 188787677644477837877585188799994667715722788888520586676-99--88817886--58379727
Q T0572 10 KSVPVKLELTGDKASNVSSISYSFDRGHVTIVGSQEAMDKIDSITVPVDISQVTEDT-SK--TLELKAEG--VTVQPSTV 84 (93)
Q Consensus 10 K~VpV~~~~~G~~~~gy~~~~~~~~p~~V~i~G~~~~l~~I~~i~~~vdis~~t~~~-~~--~v~lp~~~--~~i~p~~V 84 (93)
.++.|-+.+.+ +++||.+.+-.-+ -+|+++|+++.|+. +.+.+.+||+|+.... +. ++.+|.+. ..++|+.+
T Consensus 3 ~T~~vpl~~~N-~p~~~~v~~~~~t-V~V~v~G~~~~in~-~di~a~vDLs~l~~G~~~v~v~v~~p~g~~~v~i~P~~V 79 (90)
T 3lyw_A 3 PTLTLSLIAKN-TPANSMIMTKLPS-VRVKTEGYNPSINV-NELFAYVDLSGSEPGEHDYEVKVEPIPNIKIVEISPRVV 79 (90)
T ss_dssp CEEEEEEEEES-CCTTEEECSCCCE-EEEEEEECCTTCCS-TTCEEEEECTTCCSEEEEEECEECCCTTEEEEEEESSEE
T ss_pred CEEEEEEEEEC-CCCCEEEECCCCE-EEEEEEECCCCCCH-HHEEEEEECCCCCCCCEEEEEEEECCCCCEEEEECCCEE
T ss_conf 50995589760-8998199579996-99999915226895-898999998899863099868983799838999798989
Q ss_pred EEEEEE
Q ss_conf 999888
Q T0572 85 KVNLKV 90 (93)
Q Consensus 85 ~V~v~v 90 (93)
+++++-
T Consensus 80 ~V~Id~ 85 (90)
T 3lyw_A 80 TLQLEH 85 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999982
No 2
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51}
Probab=97.53 E-value=1.3e-05 Score=44.71 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=57.6
Q ss_pred CEEEEEEEEEEECCCCCEEEEEEECCCEEEEEECHHHHCCCEE--EEEEEEEECCCCCEE-E--EEEECCCCEEECCCEE
Q ss_conf 1887876776444778378775851887999946677157227--888885205866769-9--8881788658379727
Q T0572 10 KSVPVKLELTGDKASNVSSISYSFDRGHVTIVGSQEAMDKIDS--ITVPVDISQVTEDTS-K--TLELKAEGVTVQPSTV 84 (93)
Q Consensus 10 K~VpV~~~~~G~~~~gy~~~~~~~~p~~V~i~G~~~~l~~I~~--i~~~vdis~~t~~~~-~--~v~lp~~~~~i~p~~V 84 (93)
-.+||.+.- +++||.+.... .-=+|+++|+++.|++++. +.+.+||+|+....- . ++.+|.|...++-..+
T Consensus 5 ~~VPI~v~N---lp~~~~v~~~~-~tV~Vtv~G~~~~l~~l~~~di~~~vDls~l~~G~~~v~v~v~~P~gv~vv~i~~~ 80 (98)
T 2kps_A 5 YDLPIVLRN---LPEDLVLEKPL-PEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSIPDV 80 (98)
T ss_dssp GGSCCEECS---CCTTEEESCCC-CCCCCCCCCCHHHHHTCCTTTSBCEECCTTCCSSCEEEECCCBCSSCCCCCCCCEE
T ss_pred ECCCEEEEE---CCCCCEEEECC-CEEEEEEEECHHHHHHCCHHCEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCE
T ss_conf 804889994---89870999368-83999999878995007601489999956877455899699957997089936986
Q ss_pred EEEEEEEEC
Q ss_conf 999888769
Q T0572 85 KVNLKVTQK 93 (93)
Q Consensus 85 ~V~v~v~kk 93 (93)
++++..+++
T Consensus 81 ~vtl~~ke~ 89 (98)
T 2kps_A 81 TYTLKAKED 89 (98)
T ss_dssp EECEEECCC
T ss_pred EEEEEECCC
T ss_conf 999985056
No 3
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=97.20 E-value=0.00092 Score=35.96 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=53.5
Q ss_pred CEEEEEEEEEEECCCCCEEEEEEECCCEEEEEECHHHHCCCE----EEEEEEEEECCCCCEEEEEEE----CCCC--EEE
Q ss_conf 188787677644477837877585188799994667715722----788888520586676998881----7886--583
Q T0572 10 KSVPVKLELTGDKASNVSSISYSFDRGHVTIVGSQEAMDKID----SITVPVDISQVTEDTSKTLEL----KAEG--VTV 79 (93)
Q Consensus 10 K~VpV~~~~~G~~~~gy~~~~~~~~p~~V~i~G~~~~l~~I~----~i~~~vdis~~t~~~~~~v~l----p~~~--~~i 79 (93)
..|||.+.+-. ++|.+.+. .+-=+|+++|+++.|.+++ .+.+.+||+|+... +.++++ ++++ ..+
T Consensus 12 ~~vpv~v~~d~---~~y~V~~~-p~tV~V~v~G~~s~i~~~~~s~~di~a~iDLs~l~~G-~~~vpv~v~~~p~~v~v~v 86 (119)
T 2kq1_A 12 GELELTVLYDE---ERYDIVEQ-TETVQVDLEGPRGVLTVFRFARPSYEVFVDLTEAGEG-SHTVDVEHRGFPGDLAVTV 86 (119)
T ss_dssp EEEEEEEECCT---TTCEEEEC-CCEEEEEEEECHHHHHHHTTSCCCCEEEEECTTCCBE-EEEEECEEESSCTTSEEEE
T ss_pred EECCEEEEECC---CCEEEECC-CCEEEEEEEECHHHHHHCCCCCCCEEEEEECHHCCCC-EEEEEEEEECCCCCEEEEE
T ss_conf 73228999858---87799788-9689999997088822222686459999980107641-5898789864998579998
Q ss_pred CCCEEEEEEE
Q ss_conf 7972799988
Q T0572 80 QPSTVKVNLK 89 (93)
Q Consensus 80 ~p~~V~V~v~ 89 (93)
+|+.+++++.
T Consensus 87 ~P~~v~V~Id 96 (119)
T 2kq1_A 87 EPRMARVQLE 96 (119)
T ss_dssp SCCEEEEEEE
T ss_pred CCCEEEEEEE
T ss_conf 7899999998
No 4
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=7.80 E-value=1e+02 Score=11.98 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=46.1
Q ss_pred EEEEEEEEEEECCCCCEEE-EEEECCCEEEEEECHHHHCCCEEEEEEEEEECCCCCEEEEE---EECCCCEEEC-CCEEE
Q ss_conf 8878767764447783787-75851887999946677157227888885205866769988---8178865837-97279
Q T0572 11 SVPVKLELTGDKASNVSSI-SYSFDRGHVTIVGSQEAMDKIDSITVPVDISQVTEDTSKTL---ELKAEGVTVQ-PSTVK 85 (93)
Q Consensus 11 ~VpV~~~~~G~~~~gy~~~-~~~~~p~~V~i~G~~~~l~~I~~i~~~vdis~~t~~~~~~v---~lp~~~~~i~-p~~V~ 85 (93)
++.|-+.+.|. +.|...+ -+...-.++.|.+....|=. ...+|++++.-....++ +||.|....+ +..+-
T Consensus 97 ~v~VPv~~~G~-~~gvk~GG~l~~~~~~i~v~~~P~~IP~----~I~VDvs~L~iGd~i~v~Dl~lp~gv~~~~d~~~~V 171 (206)
T 1feu_A 97 EMYVPLRFVGT-PAGVRAGGVLQEIHRDILVKVSPRNIPE----FIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETI 171 (206)
T ss_dssp EEEEEEEEESC-CHHHHTTCEEEECCSEEEEEECGGGCCS----CEEEECTTCCTTEEEEGGGSCCCTTCEESSCTTCEE
T ss_pred EEEEEEEEEEC-CCCEECCCEEEEEEEEEEEEEEHHCCCC----EEEEECCCCCCCCEEEEEEECCCCCCEECCCCCCEE
T ss_conf 99972599605-5436058699998637889710322982----799975127689869998332899948905899669
Q ss_pred EEEE
Q ss_conf 9988
Q T0572 86 VNLK 89 (93)
Q Consensus 86 V~v~ 89 (93)
+++.
T Consensus 172 vsv~ 175 (206)
T 1feu_A 172 AAVV 175 (206)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9996
No 5
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W 1vou_W 1vow_W ...
Probab=7.35 E-value=1.1e+02 Score=11.86 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=44.1
Q ss_pred EEEEEEEEEEECCCCCEEEE-EEECCCEEEEEE--CHHHHCCCEEEEEEEEEECCCCCEEEE---EEECCCCEEE-CCCE
Q ss_conf 88787677644477837877-585188799994--667715722788888520586676998---8817886583-7972
Q T0572 11 SVPVKLELTGDKASNVSSIS-YSFDRGHVTIVG--SQEAMDKIDSITVPVDISQVTEDTSKT---LELKAEGVTV-QPST 83 (93)
Q Consensus 11 ~VpV~~~~~G~~~~gy~~~~-~~~~p~~V~i~G--~~~~l~~I~~i~~~vdis~~t~~~~~~---v~lp~~~~~i-~p~~ 83 (93)
++.|-+.+.|. +.|...+. +...-.++.+.. |.+.=+. ..+|++++.-.-..+ ++||.|...+ +|..
T Consensus 93 ~v~VPv~~~Ge-~~gvk~GG~l~~~~~~iev~~~~P~~IPe~-----IeVDVs~L~iGdsi~v~Dl~lpegv~~~~d~d~ 166 (237)
T 2zjr_S 93 EVSVPVHTTGR-SQGEVQGGLVDIVVHNLQIVAPGPRRIPQE-----LVVDVTKMNIGDHITAGDIKLPEGCTLAADPEL 166 (237)
T ss_dssp EEEEECEEESC-CTTTTTTSEEECSCSEEEEECCCTTCCCSC-----CEEECTTCCSSCEEETTTSCCSTTCCCCSCTTC
T ss_pred EEEEEEEEECC-CCCCCCCCEEEEEEHHHHHHCCCHHHCCCE-----EEECHHCCCCCCEEEEEEECCCCCEEECCCCCC
T ss_conf 99834898546-433135752565301256645682334306-----896500275898799984517898188159995
Q ss_pred EEEEEE
Q ss_conf 799988
Q T0572 84 VKVNLK 89 (93)
Q Consensus 84 V~V~v~ 89 (93)
+-++|.
T Consensus 167 ~VvsV~ 172 (237)
T 2zjr_S 167 TVVSVL 172 (237)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 799996
No 6
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 2p4t_A*
Probab=7.18 E-value=1.1e+02 Score=11.82 Aligned_cols=22 Identities=18% Similarity=0.004 Sum_probs=16.3
Q ss_pred ECCCCCEEEEEEECCCEEEEEEC
Q ss_conf 44778378775851887999946
Q T0572 21 DKASNVSSISYSFDRGHVTIVGS 43 (93)
Q Consensus 21 ~~~~gy~~~~~~~~p~~V~i~G~ 43 (93)
-.++||.+.+- ..|.+|+||--
T Consensus 34 ltpegyavese-shp~svqiyp~ 55 (62)
T 2rh2_A 34 LTPEGYAVESE-AHPGSVQIYPV 55 (62)
T ss_dssp SCSSEEEEEES-SSTTCEEEEEG
T ss_pred CCCCCEEEECC-CCCCCEEEEEH
T ss_conf 36660276515-68993889764
No 7
>1shs_A Small heat shock protein; chaperone, beta-sandwich, structural genomics, PSI, protein structure initiative; 2.90A {Methanocaldococcus jannaschii} SCOP: b.15.1.1
Probab=4.35 E-value=1.7e+02 Score=10.92 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred EEEECCCEEEEEEEEEEECCCCCEEEEEEECCCEEEEEECHHHHCCCEEEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 666343188787677644477837877585188799994667715722788888520586676998881788
Q T0572 4 SLRKLSKSVPVKLELTGDKASNVSSISYSFDRGHVTIVGSQEAMDKIDSITVPVDISQVTEDTSKTLELKAE 75 (93)
Q Consensus 4 ~v~~~~K~VpV~~~~~G~~~~gy~~~~~~~~p~~V~i~G~~~~l~~I~~i~~~vdis~~t~~~~~~v~lp~~ 75 (93)
++..-...+-+.+.+-|--++. ..+.++...++|+|.......-+.-.....-......+.+.+.||.+
T Consensus 46 di~e~~~~~~v~~~lpG~~~ed---i~v~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~ 114 (147)
T 1shs_A 46 SIIEGDQHIKVIAWLPGVNKED---IILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPAT 114 (147)
T ss_dssp EEEECSSEEEEEEECTTCCGGG---EEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSC
T ss_pred EEEECCCEEEEEEECCCCCCCE---EEEEECCCEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEECCCC
T ss_conf 8998499799999889984224---99998588899999962334214650686400025753899989888
No 8
>3jyv_J 40S ribosomal protein S20; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_J
Probab=3.10 E-value=1.1e+02 Score=11.76 Aligned_cols=45 Identities=9% Similarity=0.251 Sum_probs=26.5
Q ss_pred EEEEEEEEEECCCCCEEEEEEECCCEEEEEECHHHHCCCEEEEEE
Q ss_conf 878767764447783787758518879999466771572278888
Q T0572 12 VPVKLELTGDKASNVSSISYSFDRGHVTIVGSQEAMDKIDSITVP 56 (93)
Q Consensus 12 VpV~~~~~G~~~~gy~~~~~~~~p~~V~i~G~~~~l~~I~~i~~~ 56 (93)
+++.=...|.-.+.+.-.+.+..---+.++++.+.++.+..+..|
T Consensus 45 ~tv~rSPhv~gkksre~fE~r~hkRlIdi~~~~~~~~~l~~~~lp 89 (96)
T 3jyv_J 45 ISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIE 89 (96)
T ss_dssp EEECSSCSSSCSSCCEEECCCCEEECCEECCCSGGGSGGGGCCCC
T ss_pred EEEEECCCCCCCCCHHHEEEEEEEEEEEEECCHHHHHHHHCCCCC
T ss_conf 988817877998575558999867999986878999998588789
No 9
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=2.95 E-value=2.3e+02 Score=10.25 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=28.5
Q ss_pred CCCEEEEEEEEEEECCCCCEEEEEEE-CCCEEEEEECHHHHCCCEEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 43188787677644477837877585-1887999946677157227888885205866769988817
Q T0572 8 LSKSVPVKLELTGDKASNVSSISYSF-DRGHVTIVGSQEAMDKIDSITVPVDISQVTEDTSKTLELK 73 (93)
Q Consensus 8 ~~K~VpV~~~~~G~~~~gy~~~~~~~-~p~~V~i~G~~~~l~~I~~i~~~vdis~~t~~~~~~v~lp 73 (93)
++|.--|.+.+++...+|-.+.+-.. .|-. -+.|..+.+..+.+ -|.|+...-++++.||
T Consensus 3 I~kn~vV~i~Y~l~~~dG~v~dst~~~~Pl~-f~~G~g~lipglE~-----aL~gm~~Gd~~~v~i~ 63 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLD-YLHGHGSLISGLET-----ALEGHEVGDKFDVAVG 63 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTTSCCE-EESSSSSSCHHHHH-----HHSSSCTTCEEEEECS
T ss_pred CCCCCEEEEEEEEEECCCCEEEECCCCCCEE-EEECCCCCCHHHHH-----HHHCCCCCCEEEEEEE
T ss_conf 3799999999999979999998678998879-99379984678999-----8516658950799981
No 10
>3ljy_A Putative acyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PGE; 2.41A {Parabacteroides distasonis}
Probab=2.90 E-value=2.4e+02 Score=10.22 Aligned_cols=43 Identities=14% Similarity=-0.026 Sum_probs=27.2
Q ss_pred CCEEEEEEEEEEECCCCCEEEEEEE-CCCEEEEEECHHHHCCCE
Q ss_conf 3188787677644477837877585-188799994667715722
Q T0572 9 SKSVPVKLELTGDKASNVSSISYSF-DRGHVTIVGSQEAMDKID 51 (93)
Q Consensus 9 ~K~VpV~~~~~G~~~~gy~~~~~~~-~p~~V~i~G~~~~l~~I~ 51 (93)
++++++..=..=....++.+.=..- ++..|.|+|++..++.|.
T Consensus 14 t~~~~v~~F~~I~v~~~~~V~l~qg~~~~~V~i~~~~nl~~~i~ 57 (243)
T 3ljy_A 14 SKKISVADYNEIKVDGVIDFNYEQSDDPSTVEVTVDQNLHPYVN 57 (243)
T ss_dssp EEEEECCCCSEEEECSSCEEEEEECSSCCEEEEEEEGGGGGGEE
T ss_pred EEEEECCCCCEEEECCCEEEEEEECCCCCEEEEEECCCCCCEEE
T ss_conf 99997699768999478899999999850899996952235799
Done!