Query T0572 SuR18C, , 93 residues
Match_columns 93
No_of_seqs 101 out of 301
Neff 7.1
Searched_HMMs 15564
Date Fri Jun 4 14:27:01 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0572.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0572.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nm2a2 d.58.23.1 (A:134-195) 21.5 18 0.0012 14.8 1.2 27 25-52 23-49 (62)
2 d1mlaa2 d.58.23.1 (A:128-197) 15.3 30 0.002 13.7 1.2 29 24-52 26-54 (70)
3 d1mlaa2 d.58.23.1 (A:128-197) 14.1 34 0.0022 13.5 1.2 21 32-52 34-54 (70)
4 d1feua_ b.53.1.1 (A:) Ribosoma 10.3 54 0.0035 12.5 6.0 74 11-89 97-175 (185)
5 d2rh2a1 b.34.4.1 (A:21-78) R67 8.0 69 0.0044 12.0 1.7 22 21-43 30-51 (58)
6 d1dkga1 b.73.1.1 (A:139-197) H 5.7 93 0.0059 11.4 0.9 24 21-44 35-58 (59)
7 d2gqva1 b.34.4.1 (A:20-78) R67 5.0 1E+02 0.0066 11.2 1.7 22 21-43 31-52 (59)
8 d1j48a_ b.1.7.1 (A:) Antitumor 4.5 1.1E+02 0.0073 11.0 2.9 28 7-34 60-87 (109)
9 d1tg7a1 b.149.1.1 (A:570-666) 3.0 1.6E+02 0.01 10.3 0.9 34 23-56 34-67 (97)
10 d1dkga1 b.73.1.1 (A:139-197) H 2.4 1.9E+02 0.013 9.9 0.9 23 21-43 35-57 (59)
No 1
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Streptomyces coelicolor A3(2) [TaxId: 100226]}
Probab=21.47 E-value=18 Score=14.79 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=20.2
Q ss_pred CCEEEEEEECCCEEEEEECHHHHCCCEE
Q ss_conf 8378775851887999946677157227
Q T0572 25 NVSSISYSFDRGHVTIVGSQEAMDKIDS 52 (93)
Q Consensus 25 gy~~~~~~~~p~~V~i~G~~~~l~~I~~ 52 (93)
+..+..+ =+|.++.|.|+.+.++.+.+
T Consensus 23 ~v~iAn~-Nsp~q~VisG~~~av~~~~~ 49 (62)
T d1nm2a2 23 GLTPANV-NGAGQIVAAGTMEQLAALNE 49 (62)
T ss_dssp TCEEEEE-EETTEEEEEEEHHHHHHHHH
T ss_pred CEEEEEE-CCCCCEEEECCHHHHHHHHH
T ss_conf 8898563-79996999878999999997
No 2
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Escherichia coli [TaxId: 562]}
Probab=15.31 E-value=30 Score=13.71 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=20.9
Q ss_pred CCCEEEEEEECCCEEEEEECHHHHCCCEE
Q ss_conf 78378775851887999946677157227
Q T0572 24 SNVSSISYSFDRGHVTIVGSQEAMDKIDS 52 (93)
Q Consensus 24 ~gy~~~~~~~~p~~V~i~G~~~~l~~I~~ 52 (93)
.+.-.-.---.|.++.|.|+.+.++.+.+
T Consensus 26 ~~~v~iAn~Nsp~q~VisG~~~ai~~~~~ 54 (70)
T d1mlaa2 26 GQVVSPVNFNSPGQVVIAGHKEAVERAGA 54 (70)
T ss_dssp TSCEEEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred CCEEEEEEECCCCCEEEEECHHHHHHHHH
T ss_conf 98789986469985799808899999999
No 3
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of malonyl-CoA ACP transacylase {Escherichia coli [TaxId: 562]}
Probab=14.09 E-value=34 Score=13.46 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=17.6
Q ss_pred EECCCEEEEEECHHHHCCCEE
Q ss_conf 851887999946677157227
Q T0572 32 SFDRGHVTIVGSQEAMDKIDS 52 (93)
Q Consensus 32 ~~~p~~V~i~G~~~~l~~I~~ 52 (93)
--+|.++.|.|+.+.++.+.+
T Consensus 34 ~Nsp~Q~VISG~~~ai~~~~~ 54 (70)
T d1mlaa2 34 FNSPGQVVIAGHKEAVERAGA 54 (70)
T ss_dssp EEETTEEEEEEEHHHHHHHHH
T ss_pred CCCCCCEEEECCHHHHHHHHH
T ss_conf 599855666578999999999
No 4
>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein CTC) {Thermus thermophilus [TaxId: 274]}
Probab=10.31 E-value=54 Score=12.50 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=45.3
Q ss_pred EEEEEEEEEEECCCCCEEEE-EEECCCEEEEEECHHHHCCCEEEEEEEEEECCCCCEEEEE---EECCCCEEE-CCCEEE
Q ss_conf 88787677644477837877-5851887999946677157227888885205866769988---817886583-797279
Q T0572 11 SVPVKLELTGDKASNVSSIS-YSFDRGHVTIVGSQEAMDKIDSITVPVDISQVTEDTSKTL---ELKAEGVTV-QPSTVK 85 (93)
Q Consensus 11 ~VpV~~~~~G~~~~gy~~~~-~~~~p~~V~i~G~~~~l~~I~~i~~~vdis~~t~~~~~~v---~lp~~~~~i-~p~~V~ 85 (93)
++.|-+.+.|. +.|...+. +...-.++.+.+....|=. ...+|+|++.-.....+ +||+|.... +|..+-
T Consensus 97 ~v~VPv~~~G~-~~gvk~GG~l~~~~~~i~v~~~p~~IPe----~i~VDvs~L~igd~i~v~Dl~lp~gv~~~~d~~~~v 171 (185)
T d1feua_ 97 EMYVPLRFVGT-PAGVRAGGVLQEIHRDILVKVSPRNIPE----FIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETI 171 (185)
T ss_dssp EEEEEEEEESC-CHHHHTTCEEEECCSEEEEEECGGGCCS----CEEEECTTCCTTEEEEGGGSCCCTTCEESSCTTCEE
T ss_pred EEEECEEEEEC-CCCCCCCCEEEEEEEEEEEEEECCCCCE----EEEEECCCCCCCCEEEEEEECCCCCCEECCCCCCEE
T ss_conf 99933388612-3431135179998726677860007871----999972037799868988223899958904899769
Q ss_pred EEEE
Q ss_conf 9988
Q T0572 86 VNLK 89 (93)
Q Consensus 86 V~v~ 89 (93)
+++.
T Consensus 172 v~v~ 175 (185)
T d1feua_ 172 AAVV 175 (185)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9995
No 5
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=7.97 E-value=69 Score=12.01 Aligned_cols=22 Identities=18% Similarity=0.004 Sum_probs=16.4
Q ss_pred ECCCCCEEEEEEECCCEEEEEEC
Q ss_conf 44778378775851887999946
Q T0572 21 DKASNVSSISYSFDRGHVTIVGS 43 (93)
Q Consensus 21 ~~~~gy~~~~~~~~p~~V~i~G~ 43 (93)
-.++||.+.+- ..|.+|+||--
T Consensus 30 ltpegyavese-shp~svqiyp~ 51 (58)
T d2rh2a1 30 LTPEGYAVESE-AHPGSVQIYPV 51 (58)
T ss_dssp SCSSEEEEEES-SSTTCEEEEEG
T ss_pred CCCCCEEEECC-CCCCCEEEEEH
T ss_conf 36660277615-68993889764
No 6
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]}
Probab=5.71 E-value=93 Score=11.40 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=16.5
Q ss_pred ECCCCCEEEEEEECCCEEEEEECH
Q ss_conf 447783787758518879999466
Q T0572 21 DKASNVSSISYSFDRGHVTIVGSQ 44 (93)
Q Consensus 21 ~~~~gy~~~~~~~~p~~V~i~G~~ 44 (93)
....||.+.+-.+-|..|.|.-++
T Consensus 35 v~~~GY~~~~rvlRpA~V~V~k~~ 58 (59)
T d1dkga1 35 IMQKGYTLNGRTIRAAMVTVAKAK 58 (59)
T ss_dssp EEECEEEETTEEEECEEEEEEECC
T ss_pred EEECCCEECCEEEECCEEEEECCC
T ss_conf 980794989999316489994589
No 7
>d2gqva1 b.34.4.1 (A:20-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]} SCOP: d1viea_
Probab=5.02 E-value=1e+02 Score=11.18 Aligned_cols=22 Identities=18% Similarity=0.004 Sum_probs=16.1
Q ss_pred ECCCCCEEEEEEECCCEEEEEEC
Q ss_conf 44778378775851887999946
Q T0572 21 DKASNVSSISYSFDRGHVTIVGS 43 (93)
Q Consensus 21 ~~~~gy~~~~~~~~p~~V~i~G~ 43 (93)
-.++||.+.+- ..|.+|+||--
T Consensus 31 ltpegyavese-shpgsvqiyp~ 52 (59)
T d2gqva1 31 LTPEGYAVESE-AHPGSVQIYPV 52 (59)
T ss_dssp SCSSEEEEEES-SSTTCEEEEEG
T ss_pred CCCCCEEEECC-CCCCEEEEEEC
T ss_conf 16676033056-88970488641
No 8
>d1j48a_ b.1.7.1 (A:) Antitumor antibiotic C-1027 {Streptomyces globisporus [TaxId: 1908]}
Probab=4.49 E-value=1.1e+02 Score=10.98 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=17.2
Q ss_pred ECCCEEEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 3431887876776444778378775851
Q T0572 7 KLSKSVPVKLELTGDKASNVSSISYSFD 34 (93)
Q Consensus 7 ~~~K~VpV~~~~~G~~~~gy~~~~~~~~ 34 (93)
++++.+.|+-.++|.+++|-..+.+.+.
T Consensus 60 ~~t~sl~Vr~SFtg~~~dGt~wGtVdc~ 87 (109)
T d1j48a_ 60 AASFSFVVRKSYTGSTPEGTPVGSVDCA 87 (109)
T ss_dssp CEEEEEECCSEEEEECTTSCEEEEEETT
T ss_pred CEEEEEEEEEEEEEECCCCCEEEEEECC
T ss_conf 2268999998788884689800137213
No 9
>d1tg7a1 b.149.1.1 (A:570-666) Beta-galactosidase LacA, domain 3 {Penicillium sp. [TaxId: 5081]}
Probab=2.96 E-value=1.6e+02 Score=10.26 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=21.9
Q ss_pred CCCCEEEEEEECCCEEEEEECHHHHCCCEEEEEE
Q ss_conf 7783787758518879999466771572278888
Q T0572 23 ASNVSSISYSFDRGHVTIVGSQEAMDKIDSITVP 56 (93)
Q Consensus 23 ~~gy~~~~~~~~p~~V~i~G~~~~l~~I~~i~~~ 56 (93)
..||-+.+..++=.++.+.|+-..=-.|+-+.+|
T Consensus 34 ~GpYLVRsAsi~g~tL~LtGD~n~tT~lEV~~aP 67 (97)
T d1tg7a1 34 KAGYLVRSAYLDGNDLHIQADFNATTPIEVVGAP 67 (97)
T ss_dssp ECSSEEEEEEEETTEEEEEEEBSSCEEEEEESCC
T ss_pred ECCCEEEEEEECCCEEEEEEECCCCCCEEEEECC
T ss_conf 7771899999659999998215899527999268
No 10
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} SCOP: d1dkgb1
Probab=2.41 E-value=1.9e+02 Score=9.86 Aligned_cols=23 Identities=9% Similarity=-0.011 Sum_probs=14.3
Q ss_pred ECCCCCEEEEEEECCCEEEEEEC
Q ss_conf 44778378775851887999946
Q T0572 21 DKASNVSSISYSFDRGHVTIVGS 43 (93)
Q Consensus 21 ~~~~gy~~~~~~~~p~~V~i~G~ 43 (93)
....||.+.+-.+-|..|.|.=+
T Consensus 35 v~~~GY~l~~rvlRpA~V~Vak~ 57 (59)
T d1dkga1 35 IMQKGYTLNGRTIRAAMVTVAKA 57 (59)
T ss_dssp EEECEEEETTEEEECEEEEEEEC
T ss_pred EEECCEEECCEEECCCEEEEECC
T ss_conf 74078053784625624686407
Done!