Query T0574 NP_250624.1, Pseudomonas aeruginosa PA01, 126 residues
Match_columns 126
No_of_seqs 12 out of 14
Neff 3.0
Searched_HMMs 22458
Date Fri Jun 4 14:23:16 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0574.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0574.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cfu_A Uncharacterized lipopro 97.2 0.00028 1.3E-08 43.7 4.1 61 50-110 50-114 (159)
2 1xvs_A Protein APAG; MCSG APC2 92.2 0.57 2.5E-05 24.9 10.2 98 21-121 2-117 (126)
3 1tza_A APAG protein, SOR45; st 91.0 0.69 3.1E-05 24.4 6.8 100 20-121 1-117 (134)
4 3hn9_A Lamin-B1; structural ge 84.9 0.36 1.6E-05 26.1 2.1 65 28-101 4-70 (123)
5 1ufg_A Lamin A, nuclear lamin; 81.1 0.84 3.7E-05 24.0 2.8 64 34-108 35-100 (151)
6 2f1e_A Protein APAG; APAG prot 78.6 3.4 0.00015 20.5 9.9 98 22-121 4-118 (127)
7 3jt0_A Lamin-B1; structural ge 74.3 1.6 7.3E-05 22.3 2.7 67 31-109 20-88 (144)
8 1kzl_A Riboflavin synthase; bi 54.1 8.8 0.00039 18.2 3.2 39 62-100 41-82 (208)
9 1xq4_A Protein APAG; all beta 43.9 16 0.00073 16.6 7.0 96 23-121 9-122 (139)
10 1nbc_A Cellulosomal scaffoldin 41.7 18 0.0008 16.4 6.3 34 50-83 19-56 (155)
11 3ddy_A Lumazine protein, LUMP; 33.1 25 0.0011 15.6 3.1 38 62-100 41-81 (186)
12 1wi5_A RRP5 protein homolog; S 26.8 21 0.00095 16.0 1.6 18 92-109 66-83 (119)
13 2wnx_A Glycoside hydrolase, fa 25.4 34 0.0015 14.8 3.9 35 49-83 29-67 (170)
14 1ejp_A Syndecan-4; symmetric-p 23.7 15 0.00068 16.8 0.4 19 32-50 3-21 (28)
15 2qsv_A Uncharacterized protein 23.2 37 0.0017 14.6 5.8 50 49-108 136-185 (220)
16 1bvo_A Transcription factor ga 21.2 41 0.0018 14.4 2.4 23 60-82 135-161 (175)
17 1igq_A Transcriptional repress 20.9 42 0.0019 14.3 2.9 25 66-90 33-57 (62)
18 1xf1_A C5A peptidase, SCP; hyd 20.6 42 0.0019 14.3 7.0 85 24-110 477-591 (926)
No 1
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=97.18 E-value=0.00028 Score=43.69 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=51.6
Q ss_pred EEEEEEECCCCCCEECCCEEEEEECCCCCEEEEE----CCCCHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 6778885077674000330489886998278865----043201211202787311589983488
Q T0574 50 AFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLD----TVDEELTADTLKPGASVEGDAIFASED 110 (126)
Q Consensus 50 tF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkld----TVDe~L~~g~Lk~g~~vkG~avFaS~d 110 (126)
.-+|.|.|.|+.+++++-.=|..++.+|+.+... ..+..|..|.|.||+++.|..+|--+-
T Consensus 50 iV~vtV~N~g~e~~~~~~~~F~L~d~dg~~y~~~~~~~~~~~~l~~g~L~pG~kvtG~ivFeVPk 114 (159)
T 3cfu_A 50 IIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTLVSGKKVTGVLSYVIPK 114 (159)
T ss_dssp EEEEEEEECSSSCEEEEGGGEEEECTTCCBCCCEECSTTTTTBCCEEEECTTCEEEEEEEEEEST
T ss_pred EEEEEEEECCCCCEEECCCEEEEEECCCCEECCEEEECCCCCEEEEEEECCCCEEEEEEEEEECC
T ss_conf 99999997887856707651899908998962217521467604225767999899999999779
No 2
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, protein structure initiative, PSI, structural genomics, unknown function; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=92.22 E-value=0.57 Score=24.92 Aligned_cols=98 Identities=12% Similarity=0.181 Sum_probs=73.1
Q ss_pred HCCCCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCEEEE--ECC-CCHHHHHHHCCC
Q ss_conf 03656468985056654055087303456677888507767400033048988699827886--504-320121120278
Q T0574 21 AAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRL--DTV-DEELTADTLKPG 97 (126)
Q Consensus 21 a~~~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkl--dTV-De~L~~g~Lk~g 97 (126)
...+++|-|-..+.=....|.+.+..|.=+..|.+.|.++.++-|-.-..+-.+.+|+.-.. +-| -|. -.|+||
T Consensus 2 d~~~~~I~V~V~~~y~~e~S~p~~~~y~f~Y~I~I~N~~~~~vQL~sR~W~I~d~~g~~~~V~G~GVVG~q---P~l~PG 78 (126)
T 1xvs_A 2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQ---PRIKAN 78 (126)
T ss_dssp BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBC---CEECTT
T ss_pred CCCCCCEEEEEEEEECHHCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEECCCCCCCCCC---CCCCCC
T ss_conf 86679879999889962407887787999999999979978899991178999599977974477612788---973899
Q ss_pred CC---------------CEEEEEEECCCCCHHCEEEEEE
Q ss_conf 73---------------1158998348830100357885
Q T0574 98 AS---------------VEGDAIFASEDDAVYGASLVRL 121 (126)
Q Consensus 98 ~~---------------vkG~avFaS~d~sVy~A~~VKl 121 (126)
++ .+|.-.|..++..-+.|.+=++
T Consensus 79 e~f~Y~S~~~l~t~~G~M~G~y~m~~~~g~~f~v~Ip~F 117 (126)
T 1xvs_A 79 DEYTYSSGTALDTPVGVMQGQYLMIDEQGESFTVEIEPF 117 (126)
T ss_dssp CEEEEEEEEEESSSEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEECCCE
T ss_conf 987983898935895489999999969999999987787
No 3
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Shewanella oneidensis mr-1} SCOP: b.1.23.1
Probab=90.97 E-value=0.69 Score=24.45 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=73.2
Q ss_pred HHCCCCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCEEEEECCCCHHH--HHHHCCC
Q ss_conf 10365646898505665405508730345667788850776740003304898869982788650432012--1120278
Q T0574 20 FAAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELT--ADTLKPG 97 (126)
Q Consensus 20 ~a~~~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkldTVDe~L~--~g~Lk~g 97 (126)
+.+.+|+|-|-..+.=.+.-|.+++..|.=+..|.+.|.++.++-|-.-..+-.+.+|+.-...- +-++ .-.|+||
T Consensus 1 ms~~t~gI~V~V~t~y~~e~S~p~~~~y~F~Y~I~I~N~~~~~vQLlsR~W~I~d~~G~~~~V~G--~GVVG~qPiL~PG 78 (134)
T 1tza_A 1 MSALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQG--AGVVGETPTIPPN 78 (134)
T ss_dssp --CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEE--ESBTTBCCEECTT
T ss_pred CCCCCCCEEEEEEEEECHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEECC--CCCCCCCCCCCCC
T ss_conf 96244998999998994551888778799999999996998879987007999919999997216--7772787744899
Q ss_pred CC---------------CEEEEEEECCCCCHHCEEEEEE
Q ss_conf 73---------------1158998348830100357885
Q T0574 98 AS---------------VEGDAIFASEDDAVYGASLVRL 121 (126)
Q Consensus 98 ~~---------------vkG~avFaS~d~sVy~A~~VKl 121 (126)
++ .+|.-.|..++...+.|.+=++
T Consensus 79 e~f~Y~S~~~l~tp~G~M~G~y~m~~~~G~~F~v~Ip~F 117 (134)
T 1tza_A 79 TAYQYTSGTVLDTPFGIMYGTYGMVSESGEHFNAIIKPF 117 (134)
T ss_dssp EEEEEEEEEEESSSEEEEEEEEEEEETTCCEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEECCCE
T ss_conf 988982888924896699999999969999999987786
No 4
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 2kpw_A
Probab=84.91 E-value=0.36 Score=26.08 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=42.4
Q ss_pred EEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCE--EEEECCCCHHHHHHHCCCCCCE
Q ss_conf 8985056654055087303456677888507767400033048988699827--8865043201211202787311
Q T0574 28 MVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQS--FRLDTVDEELTADTLKPGASVE 101 (126)
Q Consensus 28 ~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gke--FkldTVDe~L~~g~Lk~g~~vk 101 (126)
-+-.+..++|.|+|-+-...-+ =|.++|.+.+++||.+..|+-.. ++.+ |++- -.-+|+||+.+.
T Consensus 4 ~~~~~~sa~G~V~I~e~d~~ge--~IeL~N~s~~~vdL~Gw~l~d~~-~~~~~~~~fp------~~~~l~pg~~~~ 70 (123)
T 3hn9_A 4 SISHSASATGNVCIEEIDVDGK--FIRLKNTSEQDQPMGGWEMIRKI-GDTSVSYKYT------SRYVLKAGQTVT 70 (123)
T ss_dssp CEEEEEEESSSEEEEEECTTSS--EEEEEECSSSCEECTTCEEEEEE-TTEEEEEECC------TTCEECTTCEEE
T ss_pred EEEEEECCCCCEEEEEECCCCC--EEEEEECCCCCEECCCEEEEECC-CCCCEEEECC------CCCEECCCCEEE
T ss_conf 6888872799989999779998--99999199996871887999657-9973379919------998988999899
No 5
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=81.09 E-value=0.84 Score=23.96 Aligned_cols=64 Identities=30% Similarity=0.316 Sum_probs=40.6
Q ss_pred CCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCE--EEEECCCCHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 6654055087303456677888507767400033048988699827--88650432012112027873115899834
Q T0574 34 GDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQS--FRLDTVDEELTADTLKPGASVEGDAIFAS 108 (126)
Q Consensus 34 ~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gke--FkldTVDe~L~~g~Lk~g~~vkG~avFaS 108 (126)
.++|.|+|-+-..-- ==|.|+|.+.+++||.+..|+-...+..+ |++. + .-+|+||+.+ .+++.
T Consensus 35 sa~g~V~I~E~d~~G--e~VeL~N~g~~~vdL~GW~l~~~~~~~~~~~~~fp---~---~~~l~pg~~~---~I~s~ 100 (151)
T 1ufg_A 35 RTSGRVAVEEVDEEG--KFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFP---P---KFTLKAGQVV---TIWAS 100 (151)
T ss_dssp EECSSEEEEEECTTS--SEEEEEECSSSCEECSSCEEEEEETTSCCEEEECC---T---TCEECTTCEE---EEEES
T ss_pred CCCCCEEEEEECCCC--CEEEEEECCCCCEECCCCEEEEECCCCCEEEEEEC---C---CCEECCCCEE---EEEEC
T ss_conf 368986799876999--89999959998360278689862299630589908---9---8498899879---99968
No 6
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=78.61 E-value=3.4 Score=20.52 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=69.0
Q ss_pred CCCCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCEEEEECCCCHHH--HHHHCCCCC
Q ss_conf 365646898505665405508730345667788850776740003304898869982788650432012--112027873
Q T0574 22 AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELT--ADTLKPGAS 99 (126)
Q Consensus 22 ~~~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkldTVDe~L~--~g~Lk~g~~ 99 (126)
....+|.|-....=...-|.+++..|-=+..|.+.|.++.++-|-.-..+-.+.+|+.-..+- +-++ .-+|+||+.
T Consensus 4 ~~~~~I~V~V~~~y~~e~S~p~~~~y~f~Y~I~I~N~~~~~vQL~sRhW~I~d~~G~~~~V~G--~GVVG~qP~l~PGe~ 81 (127)
T 2f1e_A 4 DPRYRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDG--EGVVGEQPWLRPGEA 81 (127)
T ss_dssp --CCCEEEEEEEEECSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEE--SSBTTBCCEECTTCE
T ss_pred CCCCCEEEEEEEEECHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEECCC--CCEECCCCCCCCCCC
T ss_conf 886999999998991662888788699999999997999866988203899839961674268--866778021679998
Q ss_pred ---------------CEEEEEEECCCCCHHCEEEEEE
Q ss_conf ---------------1158998348830100357885
Q T0574 100 ---------------VEGDAIFASEDDAVYGASLVRL 121 (126)
Q Consensus 100 ---------------vkG~avFaS~d~sVy~A~~VKl 121 (126)
.+|.-.|..++-..+.|.+=++
T Consensus 82 f~Y~S~~~l~t~~G~M~G~y~~~~~~g~~f~v~Ip~F 118 (127)
T 2f1e_A 82 FHYTSGVLLETEQGQMQGHYDMVADDGTEFIAPIAAF 118 (127)
T ss_dssp EEEEEEEEESSSCEEEEEEEEEEETTCCEEEEEEEEE
T ss_pred EEEECCCCCCCCCEEEEEEEEEEECCCCEEEEECCCE
T ss_conf 7982788946997699999999969999999988776
No 7
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=74.26 E-value=1.6 Score=22.31 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=41.0
Q ss_pred ECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCE--EEEECCCCHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 5056654055087303456677888507767400033048988699827--88650432012112027873115899834
Q T0574 31 ARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQS--FRLDTVDEELTADTLKPGASVEGDAIFAS 108 (126)
Q Consensus 31 At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gke--FkldTVDe~L~~g~Lk~g~~vkG~avFaS 108 (126)
.+..++|.|+|-+-.-.-+ =|.|+|.+.+++||....|+--. ++.+ |++.. .-+|+||+.+. ++++
T Consensus 20 ~~~sa~G~V~I~E~d~~Ge--~IeL~N~~~~~vdL~GW~L~d~~-~~~~~~~~fp~------~tvl~pg~~v~---Iwa~ 87 (144)
T 3jt0_A 20 HSASATGNVCIEEIDVDGK--FIRLKNTSEQDQPMGGWEMIRKI-GDTSVSYKYTS------RYVLKAGQTVT---IWAA 87 (144)
T ss_dssp -----CCCEEEEEECTTSS--EEEEEECSSSCEECTTCEEEEEE-TTEEEEEECCT------TCEECTTCEEE---EEET
T ss_pred EEECCCCCEEEEEECCCCC--EEEEEECCCCCEEECCEEEEECC-CCCCEEEECCC------CCEECCCCEEE---EEEC
T ss_conf 8871799989999879998--99999199996863885999636-99705899899------98987998899---9988
Q ss_pred C
Q ss_conf 8
Q T0574 109 E 109 (126)
Q Consensus 109 ~ 109 (126)
+
T Consensus 88 ~ 88 (144)
T 3jt0_A 88 N 88 (144)
T ss_dssp T
T ss_pred C
T ss_conf 9
No 8
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=54.08 E-value=8.8 Score=18.16 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=31.6
Q ss_pred CEECCCEEEEEECCCCCEEEEECCCCHHHH---HHHCCCCCC
Q ss_conf 400033048988699827886504320121---120278731
Q T0574 62 EISLKNSCLVAQSAAGQSFRLDTVDEELTA---DTLKPGASV 100 (126)
Q Consensus 62 ~idL~~~Cl~A~~~~gkeFkldTVDe~L~~---g~Lk~g~~v 100 (126)
-|-.|..||-+..-++..|.+|-++|.|-. +.+++|..|
T Consensus 41 SIavNGvCLTV~~~~~~~~~~dv~~ETl~~T~l~~lk~G~~V 82 (208)
T 1kzl_A 41 SIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAGDPV 82 (208)
T ss_dssp EEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTTCEE
T ss_pred EEEECCEEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCCCEE
T ss_conf 799889998899768547999983884546551446689878
No 9
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=43.91 E-value=16 Score=16.63 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=69.1
Q ss_pred CCCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCEEEEEC---CCCHHHHHHHCCCCC
Q ss_conf 65646898505665405508730345667788850776740003304898869982788650---432012112027873
Q T0574 23 APDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDT---VDEELTADTLKPGAS 99 (126)
Q Consensus 23 ~~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkldT---VDe~L~~g~Lk~g~~ 99 (126)
.+-+|.|-+.+.=.+.-|.+.+..|.=+..|.+.|.++.++-|-.-.++-.+.+|+.-..+- |.+. -+|+||++
T Consensus 9 ~~~~I~V~V~t~y~~e~S~p~~~~y~F~Y~ItI~N~~~~~vQLlsR~W~I~d~~G~~~eV~G~GVVG~q---PvL~PGe~ 85 (139)
T 1xq4_A 9 KPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQ---PLLAPGET 85 (139)
T ss_dssp CSSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCC---CEECTTCE
T ss_pred CCCCEEEEEEEEECHHCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEECCCCCEECCC---CCCCCCCC
T ss_conf 788889999989851228887885899999999979968569784068998399988854777461688---63879998
Q ss_pred ---------------CEEEEEEECCCCCHHCEEEEEE
Q ss_conf ---------------1158998348830100357885
Q T0574 100 ---------------VEGDAIFASEDDAVYGASLVRL 121 (126)
Q Consensus 100 ---------------vkG~avFaS~d~sVy~A~~VKl 121 (126)
.+|.-.|..++..-+.|.+=++
T Consensus 86 F~Y~S~~~L~tp~G~M~G~y~m~~~~G~~F~v~Ip~F 122 (139)
T 1xq4_A 86 FEYTSGCPLPTPIGTMRGTYHCVGENGIPFEVPIAEF 122 (139)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEEETTSCEEEEEEEEE
T ss_pred EEEECCCCCCCCCEEEEEEEEEEECCCCEEEEECCCE
T ss_conf 7981888958996799999999979999999987786
No 10
>1nbc_A Cellulosomal scaffolding protein A; cellulose degradation, cellulose-binding domain, cellulosome, scafoldin; 1.75A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=41.66 E-value=18 Score=16.42 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=26.2
Q ss_pred EEEEEEECCCCCCEECCCEEEEEEC----CCCCEEEEE
Q ss_conf 6778885077674000330489886----998278865
Q T0574 50 AFKVRLVNAAKSEISLKNSCLVAQS----AAGQSFRLD 83 (126)
Q Consensus 50 tF~V~v~N~~~k~idL~~~Cl~A~~----~~gkeFkld 83 (126)
.+.+.|.|.+..||+|+++-+|=|. ...+.|-.|
T Consensus 19 ~~~~~i~N~~~~~i~lsdl~~RYyft~d~~~~~~~~~d 56 (155)
T 1nbc_A 19 NPQFKVTNTGSSAIDLSKLTLRYYYTVDGQKDQTFWCD 56 (155)
T ss_dssp CEEEEEEECSSSCEEGGGEEEEEEECCSSCCCEEEEEE
T ss_pred EEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCEEEC
T ss_conf 48999998988840026089999993578732424861
No 11
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=33.09 E-value=25 Score=15.63 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=28.2
Q ss_pred CEECCCEEEEEECCCCCEEEEECCCCHHHHH---HHCCCCCC
Q ss_conf 4000330489886998278865043201211---20278731
Q T0574 62 EISLKNSCLVAQSAAGQSFRLDTVDEELTAD---TLKPGASV 100 (126)
Q Consensus 62 ~idL~~~Cl~A~~~~gkeFkldTVDe~L~~g---~Lk~g~~v 100 (126)
-|-.|..||-+..-++..|.+| |+|.|-.- .|++|..|
T Consensus 41 SiavnGvCLTV~~~~~~~~~fd-v~eTl~~T~l~~l~~G~~V 81 (186)
T 3ddy_A 41 VMLVNGCSNTVVRILGDMVYFD-IDQALGTTTFDGLKEGDQV 81 (186)
T ss_dssp EEEETTEEEEEEEEETTEEEEE-ECTTTTTSSGGGCCTTCEE
T ss_pred EEEECCEEEEEEEECCCEEEEE-CHHHHHHCCHHHCCCCCEE
T ss_conf 8996879999999679879998-1697302006017479998
No 12
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.81 E-value=21 Score=15.98 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=10.6
Q ss_pred HHHCCCCCCEEEEEEECC
Q ss_conf 120278731158998348
Q T0574 92 DTLKPGASVEGDAIFASE 109 (126)
Q Consensus 92 g~Lk~g~~vkG~avFaS~ 109 (126)
..+++|+.++-.+.=...
T Consensus 66 ~~l~vGq~v~~~V~~vd~ 83 (119)
T 1wi5_A 66 AKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp CCCCTTCEEEEEEEECCT
T ss_pred CEEEEEEEEEEEEEEEEC
T ss_conf 002100189999999837
No 13
>2wnx_A Glycoside hydrolase, family 9; cellulose degradation; 1.31A {Clostridium thermocellum} PDB: 2wo4_A 2wob_A
Probab=25.37 E-value=34 Score=14.84 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=26.3
Q ss_pred EEEEEEEECCCCCCEECCCEEEEEEC----CCCCEEEEE
Q ss_conf 66778885077674000330489886----998278865
Q T0574 49 QAFKVRLVNAAKSEISLKNSCLVAQS----AAGQSFRLD 83 (126)
Q Consensus 49 KtF~V~v~N~~~k~idL~~~Cl~A~~----~~gkeFkld 83 (126)
=.+.+.|.|.+..||+|+++-+|=|. ...+.|..|
T Consensus 29 I~~~~~I~N~g~~pi~Lsdl~iRYyft~dg~~~~~~~cd 67 (170)
T 2wnx_A 29 IRATINIKNTGTTPVNLSDIKVRYWFTSDGNEQNNFVCD 67 (170)
T ss_dssp EEEEEEEEECSSSCEEGGGEEEEEEECCTTCSCEEEEEC
T ss_pred EEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCEEEE
T ss_conf 817999998988876546458999996688752434877
No 14
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=23.72 E-value=15 Score=16.80 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=16.2
Q ss_pred CCCCCCCEECCCCEEEEEE
Q ss_conf 0566540550873034566
Q T0574 32 RQGDKGSVSVGDKHFRTQA 50 (126)
Q Consensus 32 t~~s~GsvS~~~k~~yTKt 50 (126)
..+.+||--.|.++.|+|.
T Consensus 3 kkkdegsydlg~kpiy~ka 21 (28)
T 1ejp_A 3 KKKDEGSYDLGKKPIYKKA 21 (28)
T ss_dssp SCCCCCCCCCCSCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCC
T ss_conf 3355665223667410227
No 15
>2qsv_A Uncharacterized protein; MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.10A {Porphyromonas gingivalis W83}
Probab=23.21 E-value=37 Score=14.60 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=24.0
Q ss_pred EEEEEEEECCCCCCEECCCEEEEEECCCCCEEEEECCCCHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 667788850776740003304898869982788650432012112027873115899834
Q T0574 49 QAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEGDAIFAS 108 (126)
Q Consensus 49 KtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkldTVDe~L~~g~Lk~g~~vkG~avFaS 108 (126)
.+..+.+.|.|..++.++.. ......|... ...++|.||++.+=.+-|.-
T Consensus 136 ~~~~~~i~N~G~~pl~i~~~-----~~~~~~~~~~-----~~~~~i~pg~~~~i~v~~~p 185 (220)
T 2qsv_A 136 TKAAIEIRNVGAGPLRLHSV-----TTRNPALTAV-----PDRTEIKPGGSTLLRIAVDP 185 (220)
T ss_dssp EEEEEEEEECSSSCEEEEEE-----EECSTTEEEE-----ESCSEECTTCEEEEEEEECH
T ss_pred EEEEEEEEECCCCCEEEEEE-----ECCCCCEEEC-----CCCEEECCCCEEEEEEEEEE
T ss_conf 89999999569886899998-----6488844763-----77346789966999999997
No 16
>1bvo_A Transcription factor gambif1; REL protein, morphogen, immunity, development, insects, complex (transcription factor/DNA); HET: DNA; 2.70A {Anopheles gambiae} SCOP: b.2.5.3
Probab=21.23 E-value=41 Score=14.37 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=14.3
Q ss_pred CCCEECCCE--EEEEECC--CCCEEEE
Q ss_conf 674000330--4898869--9827886
Q T0574 60 KSEISLKNS--CLVAQSA--AGQSFRL 82 (126)
Q Consensus 60 ~k~idL~~~--Cl~A~~~--~gkeFkl 82 (126)
.++||||-. ||.||-+ ++..|..
T Consensus 135 ~~~~dLN~VRLcFqafl~~~~~g~~t~ 161 (175)
T 1bvo_A 135 PGSIDLNAVRLCFQVFLEGQQRGRFTE 161 (175)
T ss_dssp GGGSCTTEEEEEEEEEEECSSTTCEEE
T ss_pred HCCCCCCEEEEEEEEEEECCCCCEEEE
T ss_conf 000542158999999998489998843
No 17
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=20.90 E-value=42 Score=14.33 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCEEEEECCCCHHH
Q ss_conf 3304898869982788650432012
Q T0574 66 KNSCLVAQSAAGQSFRLDTVDEELT 90 (126)
Q Consensus 66 ~~~Cl~A~~~~gkeFkldTVDe~L~ 90 (126)
..+..--|..|||||..+--|-+|+
T Consensus 33 egyawlkyeddgqefeanladvklv 57 (62)
T 1igq_A 33 EGYAWLKYEDDGQEFEANLADVKLV 57 (62)
T ss_dssp TTEEEEEETTTCCEEEEEGGGCEEE
T ss_pred CCCEEEEECCCHHHHHHCHHHEEEE
T ss_conf 6604677616416765220210688
No 18
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=20.63 E-value=42 Score=14.29 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCE-EEEEEC-----------------------CCCC-
Q ss_conf 564689850566540550873034566778885077674000330-489886-----------------------9982-
Q T0574 24 PDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNS-CLVAQS-----------------------AAGQ- 78 (126)
Q Consensus 24 ~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~-Cl~A~~-----------------------~~gk- 78 (126)
...+.+.......++++.++-. -+.+|.+.+.|.+.++..++-. ...... |.|.
T Consensus 477 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~n~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtv~ag~s 555 (926)
T 1xf1_A 477 AATMYVTDKDNTSSKVHLNNVS-DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSS 555 (926)
T ss_dssp HCSEEEEESSSSCSCEEEEEEC-SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEE
T ss_pred CCCCCCCCCCCCCCCEEECCCC-CCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCEEECCCCCEEECCCCEEEECCCCE
T ss_conf 7886124676765503105778-606899997615887469889888751001474243156523745788799899980
Q ss_pred -EEEEECCCCHH-H---HHHHCCCCCCEEEEEEECCC
Q ss_conf -78865043201-2---11202787311589983488
Q T0574 79 -SFRLDTVDEEL-T---ADTLKPGASVEGDAIFASED 110 (126)
Q Consensus 79 -eFkldTVDe~L-~---~g~Lk~g~~vkG~avFaS~d 110 (126)
++.+ |+|.+- + ...+.+|+-++|++.|.+++
T Consensus 556 ~~vtv-t~~~~~~~~~~~~~~~~~~~~~G~v~~~~~~ 591 (926)
T 1xf1_A 556 KQVTV-PIDASRFSKDLLAQMKNGYFLEGFVRFKQDP 591 (926)
T ss_dssp EEEEE-EEECHHHHHHHHHHSTTCEEEEEEEEEESST
T ss_pred EEEEE-EECCCCCCCCCCCCCCCCCEEEEEEEEEECC
T ss_conf 79999-9626655543344566784788999998589
Done!