Query T0574 NP_250624.1, Pseudomonas aeruginosa PA01, 126 residues
Match_columns 126
No_of_seqs 12 out of 14
Neff 3.0
Searched_HMMs 15564
Date Fri Jun 4 14:24:16 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0574.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0574.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ifra_ b.1.16.1 (A:) Lamin A/ 87.6 0.38 2.4E-05 25.0 4.2 62 32-101 2-65 (113)
2 d1ifra_ b.1.16.1 (A:) Lamin A/ 86.0 0.3 2E-05 25.6 3.0 61 32-100 2-64 (113)
3 d1tzaa_ b.1.23.1 (A:) ApaG {Sh 81.9 1.8 0.00012 21.2 6.8 98 22-121 1-115 (132)
4 d1xvsa_ b.1.23.1 (A:) ApaG {Vi 78.1 2.4 0.00016 20.4 6.8 99 21-122 2-118 (124)
5 d1xvsa_ b.1.23.1 (A:) ApaG {Vi 76.8 2.7 0.00017 20.2 10.1 99 22-122 3-118 (124)
6 d1kzla2 b.43.4.3 (A:93-202) Ri 52.8 5.7 0.00036 18.4 2.9 54 48-101 26-89 (110)
7 d1i8da1 b.43.4.3 (A:1-93) Ribo 48.2 6.4 0.00041 18.1 2.6 42 60-101 39-83 (93)
8 d1xq4a_ b.1.23.1 (A:) ApaG {Bo 47.7 9.9 0.00064 17.0 7.1 97 23-121 3-116 (123)
9 d1kzla1 b.43.4.3 (A:1-92) Ribo 47.2 9.1 0.00059 17.2 3.2 40 62-101 41-83 (92)
10 d1i8da2 b.43.4.3 (A:94-206) Ri 41.6 11 0.00068 16.8 2.9 41 61-101 45-88 (113)
No 1
>d1ifra_ b.1.16.1 (A:) Lamin A/C globular tail domain {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1ivta_
Probab=87.63 E-value=0.38 Score=25.05 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=40.6
Q ss_pred CCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCE--EEEECCCCHHHHHHHCCCCCCE
Q ss_conf 056654055087303456677888507767400033048988699827--8865043201211202787311
Q T0574 32 RQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQS--FRLDTVDEELTADTLKPGASVE 101 (126)
Q Consensus 32 t~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gke--FkldTVDe~L~~g~Lk~g~~vk 101 (126)
++.+.|.|+|-+-+..-+ =|.++|.+..+|||+...|+-...+... |.+- + .-+|.||+.++
T Consensus 2 s~~s~G~V~I~E~d~~ge--~IeL~N~s~~~idL~gw~l~~~~~~~~~~~~~fp---~---~~~l~pg~~~~ 65 (113)
T d1ifra_ 2 SHRTSGRVAVEEVDEEGK--FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFP---P---KFTLKAGQVVT 65 (113)
T ss_dssp EEEECSSEEEEEECTTSS--EEEEEECSSSCEECTTCEEEEEETTSCCEEEECC---S---SCEECTTCEEE
T ss_pred CCCCCCCEEEEEECCCCC--EEEEEECCCCCEECCCCEEEEECCCCCCEEEECC---C---CCEECCCCEEE
T ss_conf 863357768888669998--8989808998255577188882289972689848---9---85866998798
No 2
>d1ifra_ b.1.16.1 (A:) Lamin A/C globular tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.97 E-value=0.3 Score=25.57 Aligned_cols=61 Identities=26% Similarity=0.272 Sum_probs=39.5
Q ss_pred CCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCE--EEEECCCCHHHHHHHCCCCCC
Q ss_conf 056654055087303456677888507767400033048988699827--886504320121120278731
Q T0574 32 RQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQS--FRLDTVDEELTADTLKPGASV 100 (126)
Q Consensus 32 t~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gke--FkldTVDe~L~~g~Lk~g~~v 100 (126)
++.+.|+|+|-+-..=- ==|.++|.+.+++||...+|+--..++.+ |.+.- .-+|.||+.+
T Consensus 2 s~~s~G~v~I~E~d~~g--e~VeL~N~~~~~vdL~Gw~l~d~~~~~~~~~f~fP~------~~~l~pg~~v 64 (113)
T d1ifra_ 2 SHRTSGRVAVEEVDEEG--KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPP------KFTLKAGQVV 64 (113)
T ss_dssp EEEECSSEEEEEECTTS--SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCS------SCEECTTCEE
T ss_pred CCCCCCCEEEEEECCCC--CEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEECC------CCEECCCCEE
T ss_conf 86679998999877999--899999299983815897898515997404899699------9798899889
No 3
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Probab=81.90 E-value=1.8 Score=21.16 Aligned_cols=98 Identities=13% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCEEEEECCCCHHH--HHHHCCCCC
Q ss_conf 365646898505665405508730345667788850776740003304898869982788650432012--112027873
Q T0574 22 AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELT--ADTLKPGAS 99 (126)
Q Consensus 22 ~~~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkldTVDe~L~--~g~Lk~g~~ 99 (126)
|.+++|-|-..+.=.+..|.+.+..|.=+..|.+.|.++.++-|-.-..+-.+.+|+.-.++- +-++ .-.|.||++
T Consensus 1 a~t~gI~V~V~t~y~~e~S~p~~~~y~F~Y~ItI~N~~~~~vQLlsR~W~I~d~~G~~~eV~G--~GVVG~qPvl~PGe~ 78 (132)
T d1tzaa_ 1 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQG--AGVVGETPTIPPNTA 78 (132)
T ss_dssp CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEE--ESBTTBCCEECTTEE
T ss_pred CCCCCEEEEEEEEECHHCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEC--CCCCCCCCCCCCCCC
T ss_conf 966998999998995340788777699999999996999889989328999989999999737--876178674489998
Q ss_pred ---------------CEEEEEEECCCCCHHCEEEEEE
Q ss_conf ---------------1158998348830100357885
Q T0574 100 ---------------VEGDAIFASEDDAVYGASLVRL 121 (126)
Q Consensus 100 ---------------vkG~avFaS~d~sVy~A~~VKl 121 (126)
.+|.-.|..++...+.|.+=++
T Consensus 79 f~Y~S~~~l~t~~G~M~G~y~m~~~~g~~F~v~Ip~F 115 (132)
T d1tzaa_ 79 YQYTSGTVLDTPFGIMYGTYGMVSESGEHFNAIIKPF 115 (132)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEEETTCCEEEEEEEEE
T ss_pred EEEECCCCCCCCCEEEEEEEEEEECCCCEEEEECCCE
T ss_conf 8983788934895699999999979999999988787
No 4
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} SCOP: d1tzaa_ d1xq4c_ d1xq4b_ d1xq4a_
Probab=78.10 E-value=2.4 Score=20.44 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=75.3
Q ss_pred HCCCCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCEEEEE--CC-CCHHHHHHHCCC
Q ss_conf 036564689850566540550873034566778885077674000330489886998278865--04-320121120278
Q T0574 21 AAAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLD--TV-DEELTADTLKPG 97 (126)
Q Consensus 21 a~~~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkld--TV-De~L~~g~Lk~g 97 (126)
...+++|-|-..+.=.+.-|.+++..|.=...|.+.|.++.++-|-.-..+-.+.+|+.-..+ -| -+. -.|+||
T Consensus 2 ~~~t~~I~V~V~~~y~~~~S~~~~~~y~f~Y~I~I~N~~~~~vQLlsRhW~I~d~~g~~~~V~G~GVVG~q---P~i~PG 78 (124)
T d1xvsa_ 2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQ---PRIKAN 78 (124)
T ss_dssp BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBC---CEECTT
T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEECCCCCCCC---CEECCC
T ss_conf 52377718998889832217855582899989889968998189962079987189973573148884888---755779
Q ss_pred CC---------------CEEEEEEECCCCCHHCEEEEEEE
Q ss_conf 73---------------11589983488301003578852
Q T0574 98 AS---------------VEGDAIFASEDDAVYGASLVRLS 122 (126)
Q Consensus 98 ~~---------------vkG~avFaS~d~sVy~A~~VKls 122 (126)
++ .+|.-.|..+|...+.|.+=.++
T Consensus 79 e~f~Y~Sg~~l~t~~G~M~G~y~m~~~~g~~F~v~Ip~F~ 118 (124)
T d1xvsa_ 79 DEYTYSSGTALDTPVGVMQGQYLMIDEQGESFTVEIEPFR 118 (124)
T ss_dssp CEEEEEEEEEESSSEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCEEEECCEECCCCEEEEEEEEEEECCCCCEEEEECCCCC
T ss_conf 9678805505058747998989998499988889588110
No 5
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}
Probab=76.85 E-value=2.7 Score=20.23 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=73.1
Q ss_pred CCCCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCEE--EEECCCCHHHHHHHCCCCC
Q ss_conf 36564689850566540550873034566778885077674000330489886998278--8650432012112027873
Q T0574 22 AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSF--RLDTVDEELTADTLKPGAS 99 (126)
Q Consensus 22 ~~~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeF--kldTVDe~L~~g~Lk~g~~ 99 (126)
..+.+|-|-..+.=.+..|.+++..|.=+..|.+.|.++.++-|-.-...-.+.+|+.- .-+-|=.. .-.|+||+.
T Consensus 3 ~~~~~I~V~V~~~y~~e~S~p~~~~y~f~Y~I~I~N~~~~~vQLlsR~W~I~d~~g~~~~V~G~GVVG~--qPvl~PGe~ 80 (124)
T d1xvsa_ 3 VSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGE--QPRIKANDE 80 (124)
T ss_dssp CSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTB--CCEECTTCE
T ss_pred CCCCCEEEEEEEEECHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEECCCCCCCC--CCCCCCCCC
T ss_conf 666987999988996240888778799999999996998889999118899959997897006761278--997389998
Q ss_pred ---------------CEEEEEEECCCCCHHCEEEEEEE
Q ss_conf ---------------11589983488301003578852
Q T0574 100 ---------------VEGDAIFASEDDAVYGASLVRLS 122 (126)
Q Consensus 100 ---------------vkG~avFaS~d~sVy~A~~VKls 122 (126)
.+|.-.|..++...+.|.+=++.
T Consensus 81 f~Y~S~~~l~tp~G~M~G~y~m~~~~g~~F~v~Ip~F~ 118 (124)
T d1xvsa_ 81 YTYSSGTALDTPVGVMQGQYLMIDEQGESFTVEIEPFR 118 (124)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEECCCCCCCCCEEEEEEEEEECCCCCEEEEECCCEE
T ss_conf 79837889358975899999999199999999887888
No 6
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=52.85 E-value=5.7 Score=18.35 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=38.3
Q ss_pred EEEEEEEEEC--CC-----CCCEECCCEEEEEECCCCCEEEEECCCCHHHH---HHHCCCCCCE
Q ss_conf 5667788850--77-----67400033048988699827886504320121---1202787311
Q T0574 48 TQAFKVRLVN--AA-----KSEISLKNSCLVAQSAAGQSFRLDTVDEELTA---DTLKPGASVE 101 (126)
Q Consensus 48 TKtF~V~v~N--~~-----~k~idL~~~Cl~A~~~~gkeFkldTVDe~L~~---g~Lk~g~~vk 101 (126)
...|.+...+ .. +.-|-+|..||-...-++..|.++-+.|.|-. +.+++|..|+
T Consensus 26 ~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~~~~f~v~lipETl~~Tnl~~~~~G~~VN 89 (110)
T d1kzla2 26 AIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVGDLVN 89 (110)
T ss_dssp EEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTTSGGGGCCTTCEEE
T ss_pred CCEEEEECCHHHHHHHHHHHHEEECCCCEEEEEEECCCEEEEEEHHHHHHHCCCCCCCCCCEEE
T ss_conf 5213563250555331001214774783899972569789998769987656000177999899
No 7
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=48.20 E-value=6.4 Score=18.06 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=33.7
Q ss_pred CCCEECCCEEEEEECCCCCEEEEECCCCHHHH---HHHCCCCCCE
Q ss_conf 67400033048988699827886504320121---1202787311
Q T0574 60 KSEISLKNSCLVAQSAAGQSFRLDTVDEELTA---DTLKPGASVE 101 (126)
Q Consensus 60 ~k~idL~~~Cl~A~~~~gkeFkldTVDe~L~~---g~Lk~g~~vk 101 (126)
..-|-++..||-+..-+...|.++-+.|.|-. +.+++|..|.
T Consensus 39 g~SIavnGvcLTV~~~~~~~f~~~ii~eTl~~T~l~~~~~G~~VN 83 (93)
T d1i8da1 39 GASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVN 83 (93)
T ss_dssp TCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTCEEE
T ss_pred CCEEEECCEEEEEEECCCCCEEEEEEHHHHHHCCHHHCCCCCEEE
T ss_conf 876997778899996277518999967883117220166899999
No 8
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}
Probab=47.69 E-value=9.9 Score=16.97 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCCCCEECCCCEEEEEEEEEEEECCCCCCEECCCEEEEEECCCCCEEEEECCCCHHH--HHHHCCCCC-
Q ss_conf 65646898505665405508730345667788850776740003304898869982788650432012--112027873-
Q T0574 23 APDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELT--ADTLKPGAS- 99 (126)
Q Consensus 23 ~~d~i~V~At~~s~GsvS~~~k~~yTKtF~V~v~N~~~k~idL~~~Cl~A~~~~gkeFkldTVDe~L~--~g~Lk~g~~- 99 (126)
.+-+|-|-....=.+.-|.+++..|.=+..|.+.|.++.++-|-.-..+-.+.+|+.-..+- +-++ .-.|+||++
T Consensus 3 ~~~~I~V~V~~~y~~e~S~~~~~~y~F~Y~I~I~N~~~~~vQL~sR~W~I~d~~g~~~eV~G--~GVVG~qPvl~PGe~f 80 (123)
T d1xq4a_ 3 KPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRG--LGVVGQQPLLAPGETF 80 (123)
T ss_dssp CSSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEE--ESSSSCCCEECTTCEE
T ss_pred CCCCEEEEEEEEECHHCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEECCC--CCEECCCCCCCCCCCE
T ss_conf 77868999999996022888788699999999997998857978406799939987797157--8782786418799978
Q ss_pred --------------CEEEEEEECCCCCHHCEEEEEE
Q ss_conf --------------1158998348830100357885
Q T0574 100 --------------VEGDAIFASEDDAVYGASLVRL 121 (126)
Q Consensus 100 --------------vkG~avFaS~d~sVy~A~~VKl 121 (126)
.+|.-.|..+|..-+.|.+=++
T Consensus 81 ~Y~S~~~l~tp~G~M~G~y~m~~~~g~~f~v~Ip~F 116 (123)
T d1xq4a_ 81 EYTSGCPLPTPIGTMRGTYHCVGENGIPFEVPIAEF 116 (123)
T ss_dssp EEEEEEEESSSEEEEEEEEEEEETTSCEEEEEEEEE
T ss_pred EEECCCCCCCCCEEEEEEEEEEECCCCEEEEECCCE
T ss_conf 981788967997699999999989999999987786
No 9
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=47.21 E-value=9.1 Score=17.17 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=32.9
Q ss_pred CEECCCEEEEEECCCCCEEEEECCCCHHHH---HHHCCCCCCE
Q ss_conf 400033048988699827886504320121---1202787311
Q T0574 62 EISLKNSCLVAQSAAGQSFRLDTVDEELTA---DTLKPGASVE 101 (126)
Q Consensus 62 ~idL~~~Cl~A~~~~gkeFkldTVDe~L~~---g~Lk~g~~vk 101 (126)
-|-+++.||-...-++..|.++-++|.|-. +.+++|..|.
T Consensus 41 SIavnGvcLTV~~~~~~~f~~~lipeTl~~T~l~~~~~G~~VN 83 (92)
T d1kzla1 41 SIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAGDPVN 83 (92)
T ss_dssp EEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTTCEEE
T ss_pred EEEECCEEEEEEEECCCEEEEEEEHHHCCCCCHHHCCCCCEEE
T ss_conf 6985667777676111049999973761564222176799999
No 10
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=41.63 E-value=11 Score=16.80 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=32.9
Q ss_pred CCEECCCEEEEEECCCCCEEEEECCCCHHHHH---HHCCCCCCE
Q ss_conf 74000330489886998278865043201211---202787311
Q T0574 61 SEISLKNSCLVAQSAAGQSFRLDTVDEELTAD---TLKPGASVE 101 (126)
Q Consensus 61 k~idL~~~Cl~A~~~~gkeFkldTVDe~L~~g---~Lk~g~~vk 101 (126)
.-|-++..||-...-++..|.+|-+.|.|-.- .+++|..|+
T Consensus 45 ~SIavnGvcLTV~~~~~~~f~v~li~ETl~~T~l~~~~~G~~VN 88 (113)
T d1i8da2 45 GFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVN 88 (113)
T ss_dssp CEEEETTEEEECCSBCSSEEEEEECHHHHHHSSGGGCCTTCEEE
T ss_pred HEEECCCCEEEEEEECCCEEEEEEEHHHHHHCCCCCCCCCCEEE
T ss_conf 23761572588763348789999678986549112476899889
Done!