Query T0575 YP_001636308.1, CHLOROFLEXUS AURANTIACUS, 216 residues
Match_columns 216
No_of_seqs 285 out of 18403
Neff 11.4
Searched_HMMs 22458
Date Fri Jun 4 14:54:57 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0575.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0575.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vi0_A Transcriptional regulat 99.9 2.8E-21 1.3E-25 182.8 22.6 191 10-216 6-196 (206)
2 3dcf_A Transcriptional regulat 99.9 6.5E-21 2.9E-25 179.9 22.6 189 9-215 28-216 (218)
3 2id6_A Transcriptional regulat 99.9 1.1E-20 4.9E-25 178.2 23.3 197 12-215 5-202 (202)
4 2f07_A YVDT; helix-turn-helix, 99.9 2.7E-20 1.2E-24 175.1 22.9 192 1-214 4-195 (197)
5 2iai_A Putative transcriptiona 99.9 3.9E-21 1.7E-25 181.6 18.0 201 10-215 28-228 (230)
6 2hyj_A Putative TETR-family tr 99.9 1.3E-19 5.9E-24 169.8 25.7 181 1-182 1-185 (200)
7 3lhq_A Acrab operon repressor 99.9 5.4E-20 2.4E-24 172.8 22.9 178 1-179 4-186 (220)
8 3lwj_A Putative TETR-family tr 99.9 2.5E-19 1.1E-23 167.7 26.0 198 1-215 2-199 (202)
9 1pb6_A Hypothetical transcript 99.9 2.8E-20 1.2E-24 175.0 20.8 195 9-216 15-212 (212)
10 2ibd_A Possible transcriptiona 99.9 1.7E-20 7.8E-25 176.6 19.2 192 7-215 9-201 (204)
11 3f0c_A TETR-molecule A, transc 99.9 3.6E-20 1.6E-24 174.2 19.9 201 6-215 5-205 (216)
12 3dew_A Transcriptional regulat 99.9 2.3E-20 1E-24 175.7 18.4 193 11-215 7-199 (206)
13 1rkt_A Protein YFIR; transcrip 99.9 3.5E-19 1.6E-23 166.5 24.5 173 1-175 1-176 (205)
14 2qtq_A Transcriptional regulat 99.9 4.6E-20 2E-24 173.4 19.7 194 11-215 15-212 (213)
15 2w53_A Repressor, SMet; antibi 99.9 3.8E-19 1.7E-23 166.3 24.1 179 1-180 1-183 (219)
16 2xdn_A HTH-type transcriptiona 99.9 2E-19 8.9E-24 168.4 22.3 178 1-179 1-183 (210)
17 3kz9_A SMCR; transcriptional r 99.9 1.8E-19 8.2E-24 168.7 21.8 162 9-171 14-175 (206)
18 3g1l_A Transcriptional regulat 99.9 9.3E-19 4.1E-23 163.3 25.2 166 10-176 42-208 (256)
19 2gen_A Probable transcriptiona 99.9 3.7E-19 1.6E-23 166.4 23.0 188 11-215 6-194 (197)
20 3crj_A Transcription regulator 99.9 6.5E-19 2.9E-23 164.4 23.7 166 10-179 12-179 (199)
21 1t56_A EThr repressor; helix-t 99.9 3.3E-18 1.5E-22 159.0 26.6 163 10-173 22-185 (216)
22 2gfn_A HTH-type transcriptiona 99.9 1.7E-20 7.4E-25 176.8 14.7 171 1-174 1-173 (209)
23 3him_A Probable transcriptiona 99.9 6.7E-19 3E-23 164.3 22.2 166 10-177 14-179 (211)
24 3bru_A Regulatory protein, TET 99.8 1E-18 4.5E-23 163.0 22.7 164 11-174 29-196 (222)
25 3knw_A Putative transcriptiona 99.8 1.5E-18 6.6E-23 161.7 23.4 165 7-172 9-178 (212)
26 2hyt_A TETR-family transcripti 99.8 4E-19 1.8E-23 166.1 19.3 193 1-216 2-195 (197)
27 3ccy_A Putative TETR-family tr 99.8 4.3E-19 1.9E-23 165.8 19.0 195 1-214 4-198 (203)
28 2g7s_A Transcriptional regulat 99.8 4E-18 1.8E-22 158.4 23.1 165 7-172 3-170 (194)
29 3eup_A Transcriptional regulat 99.8 4.1E-19 1.8E-23 166.0 18.0 168 1-172 3-174 (204)
30 3e7q_A Transcriptional regulat 99.8 3.2E-18 1.4E-22 159.1 22.2 194 8-214 10-205 (215)
31 3gzi_A Transcriptional regulat 99.8 2.5E-19 1.1E-23 167.7 16.1 204 1-215 2-211 (218)
32 3he0_A Transcriptional regulat 99.8 1.1E-18 4.9E-23 162.7 18.6 187 10-215 9-195 (196)
33 2ras_A Transcriptional regulat 99.8 5.4E-19 2.4E-23 165.1 17.0 197 1-215 2-198 (212)
34 2nx4_A Transcriptional regulat 99.8 2.6E-18 1.2E-22 159.8 20.5 178 1-184 2-181 (194)
35 1ui5_A A-factor receptor homol 99.8 5.1E-19 2.3E-23 165.3 16.9 164 1-170 1-164 (215)
36 3bhq_A Transcriptional regulat 99.8 5.5E-18 2.5E-22 157.3 22.0 195 10-216 10-211 (211)
37 3cdl_A Transcriptional regulat 99.8 7E-19 3.1E-23 164.2 16.9 198 5-215 2-201 (203)
38 2qwt_A Transcriptional regulat 99.8 1E-18 4.5E-23 163.0 17.5 175 10-216 11-185 (196)
39 2zb9_A Putative transcriptiona 99.8 1.8E-17 7.8E-22 153.4 23.5 182 10-216 21-204 (214)
40 3b81_A Transcriptional regulat 99.8 7.8E-19 3.5E-23 163.8 16.6 171 1-178 2-172 (203)
41 2g3b_A Putative TETR-family tr 99.8 2.2E-18 9.8E-23 160.4 18.3 166 11-177 2-169 (208)
42 2fq4_A Transcriptional regulat 99.8 3.2E-18 1.4E-22 159.1 18.8 184 8-216 8-192 (192)
43 1t33_A Putative transcriptiona 99.8 4.7E-18 2.1E-22 157.8 19.5 206 1-216 1-221 (224)
44 2q24_A Putative TETR family tr 99.8 2.6E-18 1.1E-22 159.8 17.7 177 10-216 13-189 (194)
45 3col_A Putative transcription 99.8 1.3E-18 6E-23 162.0 16.2 186 11-215 9-195 (196)
46 3cjd_A Transcriptional regulat 99.8 1.6E-18 7.3E-23 161.3 16.6 175 1-179 2-177 (198)
47 2o7t_A Transcriptional regulat 99.8 5.4E-18 2.4E-22 157.3 19.1 185 10-215 6-190 (199)
48 3f1b_A TETR-like transcription 99.8 1.4E-17 6E-22 154.2 20.7 165 1-169 3-167 (203)
49 3cwr_A Transcriptional regulat 99.8 2.8E-19 1.2E-23 167.3 12.0 193 9-215 14-208 (208)
50 3bqz_B HTH-type transcriptiona 99.8 3.6E-18 1.6E-22 158.7 17.2 186 12-215 2-188 (194)
51 2id3_A Putative transcriptiona 99.8 7E-17 3.1E-21 148.7 22.2 183 10-214 38-222 (225)
52 3g7r_A Putative transcriptiona 99.8 3E-17 1.3E-21 151.6 20.2 164 3-171 26-189 (221)
53 1zk8_A Transcriptional regulat 99.8 1.2E-17 5.5E-22 154.6 17.8 178 10-215 6-183 (183)
54 2hku_A A putative transcriptio 99.8 3.7E-17 1.6E-21 150.9 20.1 168 10-180 18-185 (215)
55 2qib_A TETR-family transcripti 99.8 1.8E-16 8.1E-21 145.5 23.1 168 10-185 11-178 (231)
56 3c07_A Putative TETR-family tr 99.8 2.8E-17 1.2E-21 151.9 18.8 172 10-183 39-211 (273)
57 2oer_A Probable transcriptiona 99.8 1.7E-17 7.4E-22 153.5 17.2 159 10-173 22-180 (214)
58 2rek_A Putative TETR-family tr 99.8 7.8E-18 3.5E-22 156.1 15.1 179 10-215 14-192 (199)
59 2rae_A Transcriptional regulat 99.8 1.5E-17 6.6E-22 153.9 16.5 187 8-215 13-199 (207)
60 2np5_A Transcriptional regulat 99.8 4.9E-17 2.2E-21 149.9 18.8 192 1-214 1-192 (203)
61 2d6y_A Putative TETR family re 99.8 3.3E-17 1.5E-21 151.3 17.6 153 9-170 5-157 (202)
62 2qco_A CMER; transcriptional r 99.8 1.7E-17 7.7E-22 153.4 14.7 193 11-216 12-208 (210)
63 3iuv_A Uncharacterized TETR fa 99.8 8E-17 3.5E-21 148.3 18.0 172 1-189 3-174 (201)
64 3bjb_A Probable transcriptiona 99.8 1.9E-17 8.3E-22 153.2 14.8 186 10-216 20-205 (207)
65 3geu_A Intercellular adhesion 99.8 1.7E-16 7.4E-21 145.8 19.6 140 10-153 1-140 (189)
66 2jj7_A Hemolysin II regulatory 99.8 3.1E-18 1.4E-22 159.2 10.4 150 10-163 5-154 (186)
67 2zcx_A SCO7815, TETR-family tr 99.8 8.6E-16 3.8E-20 140.3 22.3 200 9-215 20-222 (231)
68 3bni_A Putative TETR-family tr 99.8 4.9E-17 2.2E-21 149.9 15.8 165 10-181 41-206 (229)
69 2fbq_A Probable transcriptiona 99.8 3.4E-16 1.5E-20 143.4 19.9 196 10-215 5-211 (235)
70 2pz9_A Putative regulatory pro 99.8 3.5E-17 1.6E-21 151.1 14.7 155 7-170 25-179 (226)
71 2eh3_A Transcriptional regulat 99.8 7.5E-16 3.3E-20 140.8 21.2 175 13-215 3-177 (179)
72 2i10_A Putative TETR transcrip 99.8 2.8E-18 1.2E-22 159.6 8.8 168 1-173 3-174 (202)
73 2zcm_A Biofilm operon icaabcd 99.7 2.4E-16 1.1E-20 144.6 18.5 153 11-170 6-158 (192)
74 3mvp_A TETR/ACRR transcription 99.7 9.2E-16 4.1E-20 140.1 21.3 161 10-175 24-189 (217)
75 2dg7_A Putative transcriptiona 99.7 2.7E-17 1.2E-21 151.9 13.2 169 1-182 1-169 (195)
76 3c2b_A Transcriptional regulat 99.7 4.1E-17 1.8E-21 150.5 14.0 163 11-175 14-180 (221)
77 3dpj_A Transcription regulator 99.7 2.1E-16 9.5E-21 145.0 17.3 156 9-171 5-163 (194)
78 3fiw_A Putative TETR-family tr 99.7 2.1E-16 9.4E-21 145.0 16.8 184 11-216 24-207 (211)
79 2qko_A Possible transcriptiona 99.7 1.3E-16 5.8E-21 146.7 15.1 167 10-181 26-193 (215)
80 3kkd_A Transcriptional regulat 99.7 4.1E-16 1.8E-20 142.8 17.4 74 9-82 32-105 (237)
81 2of7_A Putative TETR-family tr 99.7 7.8E-17 3.5E-21 148.4 13.6 183 10-213 46-228 (260)
82 2dg8_A Putative TETR-family tr 99.7 2.3E-15 1E-19 137.0 20.9 163 11-188 8-172 (193)
83 1sgm_A Putative HTH-type trans 99.7 3.5E-17 1.5E-21 151.1 10.9 165 10-176 4-169 (191)
84 2hxo_A Putative TETR-family tr 99.7 1.8E-15 7.9E-20 137.8 18.7 104 11-117 15-118 (237)
85 3frq_A Repressor protein MPHR( 99.7 4.3E-16 1.9E-20 142.6 14.2 163 1-181 2-165 (195)
86 2v57_A TETR family transcripti 99.7 2.1E-15 9.5E-20 137.2 17.6 175 10-215 12-186 (190)
87 3jsj_A Putative TETR-family tr 99.7 3.1E-15 1.4E-19 136.0 17.8 160 10-178 7-169 (190)
88 2oi8_A Putative regulatory pro 99.7 1.4E-15 6.1E-20 138.7 15.4 108 1-113 1-112 (216)
89 2np3_A Putative TETR-family re 99.7 2E-15 9E-20 137.4 16.2 153 9-173 27-179 (212)
90 3egq_A TETR family transcripti 99.7 7.2E-15 3.2E-19 133.1 19.0 146 11-178 3-148 (170)
91 3kkc_A TETR family transcripti 99.7 2.7E-15 1.2E-19 136.5 15.9 156 11-185 11-166 (177)
92 2yve_A Transcriptional regulat 99.7 8.3E-15 3.7E-19 132.7 17.9 87 10-97 2-88 (185)
93 2iu5_A DHAS, hypothetical prot 99.7 1.9E-14 8.4E-19 129.9 19.3 154 10-179 11-165 (195)
94 2opt_A Actii protein; helical 99.7 3.9E-15 1.7E-19 135.2 15.6 96 12-112 6-101 (234)
95 2g7l_A TETR-family transcripti 99.7 6.1E-15 2.7E-19 133.7 16.0 100 10-113 17-116 (243)
96 2vke_A Tetracycline repressor 99.7 8.5E-15 3.8E-19 132.6 16.1 98 13-113 4-101 (207)
97 3bqy_A Putative TETR family tr 99.6 4.2E-15 1.9E-19 134.9 13.4 98 13-113 3-100 (209)
98 2hxi_A Putative transcriptiona 99.6 6.6E-15 2.9E-19 133.4 13.8 99 11-114 28-126 (241)
99 1z0x_A Transcriptional regulat 99.6 1.1E-14 5E-19 131.7 14.7 95 12-112 5-100 (220)
100 2fd5_A Transcriptional regulat 99.6 1.6E-14 7.1E-19 130.5 14.9 86 10-97 5-90 (180)
101 2guh_A Putative TETR-family tr 99.6 7.9E-15 3.5E-19 132.8 12.6 145 9-171 36-180 (214)
102 2vpr_A Tetracycline resistance 99.6 5.5E-15 2.5E-19 134.1 10.4 100 10-112 2-101 (207)
103 2g7g_A RHA04620, putative tran 99.6 4.5E-14 2E-18 127.0 14.1 103 1-113 3-105 (213)
104 3ljl_A Transcriptional regulat 99.5 7.5E-14 3.3E-18 125.3 10.0 71 1-72 4-74 (156)
105 2ao9_A Phage protein; structur 96.0 0.0064 2.8E-07 40.7 4.6 60 11-71 27-86 (155)
106 1jko_C HIN recombinase, DNA-in 95.7 0.0055 2.5E-07 41.2 3.1 36 18-57 11-46 (52)
107 1u78_A TC3 transposase, transp 93.9 0.042 1.9E-06 34.4 3.8 46 1-56 1-46 (141)
108 2hsg_A Glucose-resistance amyl 93.4 0.031 1.4E-06 35.3 2.4 33 32-64 2-34 (332)
109 2jn6_A Protein CGL2762, transp 93.3 0.076 3.4E-06 32.4 4.1 44 1-53 1-44 (97)
110 3hef_A Gene 1 protein; bacteri 91.5 0.27 1.2E-05 28.1 5.1 61 1-65 4-65 (143)
111 1jhf_A LEXA repressor; LEXA SO 91.5 0.16 6.9E-06 29.9 3.9 44 12-56 6-50 (202)
112 2o20_A Catabolite control prot 91.4 0.028 1.2E-06 35.7 0.0 30 31-60 4-33 (332)
113 1j5y_A Transcriptional regulat 90.9 0.15 6.7E-06 30.1 3.4 42 9-55 18-59 (187)
114 1jye_A Lactose operon represso 90.7 0.036 1.6E-06 34.9 0.0 30 31-60 2-31 (349)
115 2rn7_A IS629 ORFA; helix, all 90.6 0.42 1.9E-05 26.6 5.4 51 1-53 1-51 (108)
116 3dbi_A Sugar-binding transcrip 90.2 0.041 1.8E-06 34.4 0.0 29 31-59 2-30 (338)
117 3h5t_A Transcriptional regulat 90.0 0.11 5.1E-06 31.0 2.1 29 31-59 8-36 (366)
118 3jvd_A Transcriptional regulat 90.0 0.044 2E-06 34.2 0.0 29 31-59 5-33 (333)
119 1uxc_A FRUR (1-57), fructose r 90.0 0.087 3.9E-06 31.9 1.5 26 33-58 1-26 (65)
120 3kjx_A Transcriptional regulat 90.0 0.099 4.4E-06 31.5 1.8 28 31-58 9-36 (344)
121 3bil_A Probable LACI-family tr 89.6 0.049 2.2E-06 33.8 0.0 28 32-59 8-35 (348)
122 3h5o_A Transcriptional regulat 89.5 0.051 2.3E-06 33.7 0.0 29 32-60 4-32 (339)
123 1qpz_A PURA, protein (purine n 89.5 0.095 4.2E-06 31.6 1.4 25 33-57 1-25 (340)
124 3mkl_A HTH-type transcriptiona 87.6 1.2 5.4E-05 23.0 6.0 39 17-55 8-46 (120)
125 2k27_A Paired box protein PAX- 87.4 0.57 2.5E-05 25.6 4.2 38 9-54 26-63 (159)
126 3e3m_A Transcriptional regulat 86.9 0.094 4.2E-06 31.6 0.0 32 28-59 8-39 (355)
127 1pdn_C Protein (PRD paired); p 84.6 1.1 4.8E-05 23.4 4.5 36 8-51 17-52 (128)
128 3gbg_A TCP pilus virulence reg 84.0 1.9 8.4E-05 21.6 5.5 40 16-55 169-208 (276)
129 3b7h_A Prophage LP1 protein 11 83.9 0.62 2.8E-05 25.3 3.0 40 15-57 6-45 (78)
130 1k78_A Paired box protein PAX5 83.9 1.2 5.4E-05 23.0 4.5 36 8-51 32-67 (149)
131 2kpj_A SOS-response transcript 83.2 0.53 2.4E-05 25.8 2.4 42 14-58 7-48 (94)
132 1ku9_A Hypothetical protein MJ 83.0 1.6 7.2E-05 22.1 4.9 43 11-53 5-62 (152)
133 1bl0_A Protein (multiple antib 83.0 0.67 3E-05 25.0 2.9 42 15-56 10-51 (129)
134 2elh_A CG11849-PA, LD40883P; s 82.8 1.8 7.9E-05 21.8 5.0 46 8-61 22-67 (87)
135 3ctp_A Periplasmic binding pro 82.8 0.19 8.4E-06 29.3 0.0 27 33-59 3-29 (330)
136 1on2_A Transcriptional regulat 82.7 1.5 6.7E-05 22.3 4.6 38 12-51 4-41 (142)
137 2ezk_A Transposase; DNA-bindin 82.3 0.96 4.3E-05 23.8 3.5 44 13-57 34-78 (99)
138 3mn2_A Probable ARAC family tr 80.6 1.1 5E-05 23.3 3.3 41 18-58 4-44 (108)
139 2a6c_A Helix-turn-helix motif; 80.3 1.8 7.9E-05 21.8 4.2 41 13-56 15-55 (83)
140 1u8b_A ADA polyprotein; protei 80.2 1.6 7.3E-05 22.0 4.1 30 29-58 90-119 (133)
141 2k9s_A Arabinose operon regula 80.0 1.3 5.6E-05 22.9 3.4 43 17-59 4-47 (107)
142 2p4w_A Transcriptional regulat 79.7 0.94 4.2E-05 23.9 2.7 41 10-57 13-53 (202)
143 1y0u_A Arsenical resistance op 78.7 1.2 5.4E-05 23.0 3.0 40 9-56 28-67 (96)
144 2oqg_A Possible transcriptiona 78.3 1.9 8.4E-05 21.6 3.9 41 8-55 17-57 (114)
145 1d5y_A ROB transcription facto 77.7 0.92 4.1E-05 24.0 2.1 42 15-56 2-43 (292)
146 3bdn_A Lambda repressor; repre 77.6 2.7 0.00012 20.3 4.5 43 16-58 13-56 (236)
147 2b5a_A C.BCLI; helix-turn-heli 77.6 2.8 0.00012 20.2 4.6 45 12-59 6-50 (77)
148 1mkm_A ICLR transcriptional re 77.3 1.5 6.9E-05 22.2 3.2 33 22-55 14-46 (249)
149 3cuo_A Uncharacterized HTH-typ 76.8 1.5 6.8E-05 22.3 3.1 40 9-54 21-60 (99)
150 1uly_A Hypothetical protein PH 76.7 0.96 4.3E-05 23.8 2.0 40 10-56 18-57 (192)
151 1r1u_A CZRA, repressor protein 76.6 2.5 0.00011 20.7 4.1 39 9-54 23-61 (106)
152 3f52_A CLP gene regulator (CLG 76.1 2.2 9.6E-05 21.1 3.7 48 14-64 26-73 (117)
153 3iwf_A Transcription regulator 75.5 1.2 5.2E-05 23.2 2.2 24 30-53 33-56 (107)
154 3g5g_A Regulatory protein; tra 74.8 2.2 9.7E-05 21.1 3.4 54 1-59 15-68 (99)
155 2zkz_A Transcriptional repress 74.0 2 8.8E-05 21.4 3.0 40 9-54 24-63 (99)
156 1r1t_A Transcriptional repress 73.6 2 8.9E-05 21.4 3.0 39 9-54 43-81 (122)
157 1xsv_A Hypothetical UPF0122 pr 73.2 1.5 6.7E-05 22.3 2.3 34 22-55 31-64 (113)
158 2jsc_A Transcriptional regulat 72.7 0.9 4E-05 24.0 1.1 39 9-54 18-56 (118)
159 3f6o_A Probable transcriptiona 72.6 1.2 5.3E-05 23.1 1.6 39 9-54 15-53 (118)
160 3jth_A Transcription activator 72.3 1.2 5.4E-05 23.1 1.6 40 9-55 20-59 (98)
161 1lmb_3 Protein (lambda repress 72.2 3.2 0.00014 19.8 3.8 34 31-64 29-62 (92)
162 1y7y_A C.AHDI; helix-turn-heli 71.8 1.7 7.6E-05 21.9 2.3 41 17-60 14-54 (74)
163 2ia0_A Putative HTH-type trans 71.5 2.7 0.00012 20.3 3.3 38 13-56 18-55 (171)
164 1sfx_A Conserved hypothetical 71.2 3.1 0.00014 19.9 3.5 28 23-52 27-54 (109)
165 3i4p_A Transcriptional regulat 71.0 2.2 9.9E-05 21.0 2.7 33 22-56 9-41 (162)
166 1z4h_A TORI, TOR inhibition pr 70.6 1.6 7E-05 22.2 1.9 22 32-53 10-31 (66)
167 2cfx_A HTH-type transcriptiona 70.6 2.1 9.4E-05 21.2 2.5 33 22-56 11-43 (144)
168 2d1h_A ST1889, 109AA long hypo 70.5 3.5 0.00015 19.5 3.6 28 26-55 32-59 (109)
169 1s7o_A Hypothetical UPF0122 pr 70.2 1.9 8.4E-05 21.6 2.2 36 24-59 30-66 (113)
170 2p5t_A Putative transcriptiona 69.8 3.5 0.00015 19.5 3.5 41 31-71 13-53 (158)
171 2ia2_A Putative transcriptiona 69.5 1.1 4.7E-05 23.5 0.8 40 18-58 20-62 (265)
172 2p5v_A Transcriptional regulat 69.4 2.4 0.0001 20.8 2.6 40 12-57 10-49 (162)
173 2w25_A Probable transcriptiona 69.3 2.4 0.00011 20.8 2.6 41 11-57 6-46 (150)
174 2h09_A Transcriptional regulat 69.2 4.9 0.00022 18.3 4.6 36 14-51 38-73 (155)
175 2v4j_C Sulfite reductase, diss 69.0 4.9 0.00022 18.3 4.6 46 12-58 44-89 (105)
176 2cyy_A Putative HTH-type trans 69.0 3.4 0.00015 19.6 3.3 38 12-55 7-44 (151)
177 1b0n_A Protein (SINR protein); 68.9 2 8.9E-05 21.4 2.1 28 25-55 10-37 (111)
178 1u2w_A CADC repressor, cadmium 68.8 2.7 0.00012 20.4 2.7 22 32-53 56-77 (122)
179 1r69_A Repressor protein CI; g 68.5 1.8 7.9E-05 21.8 1.8 31 24-57 9-39 (69)
180 2pn6_A ST1022, 150AA long hypo 68.5 2.8 0.00012 20.3 2.8 33 22-56 9-41 (150)
181 2wiu_B HTH-type transcriptiona 68.5 1.5 6.6E-05 22.3 1.4 36 31-66 24-59 (88)
182 3gp4_A Transcriptional regulat 68.2 2.1 9.4E-05 21.2 2.1 21 32-52 2-22 (142)
183 2e1c_A Putative HTH-type trans 68.1 3.6 0.00016 19.3 3.3 48 2-55 16-64 (171)
184 2ofy_A Putative XRE-family tra 68.0 4.1 0.00018 18.9 3.6 25 32-56 27-51 (86)
185 2cg4_A Regulatory protein ASNC 67.9 3.7 0.00016 19.3 3.3 38 11-54 7-44 (152)
186 1adr_A P22 C2 repressor; trans 67.8 2.2 1E-04 21.0 2.2 36 21-59 10-45 (76)
187 3hug_A RNA polymerase sigma fa 67.8 2.4 0.00011 20.7 2.4 31 23-53 44-74 (92)
188 1umq_A Photosynthetic apparatu 67.5 5.3 0.00024 18.1 4.1 32 15-52 43-74 (81)
189 2o3f_A Putative HTH-type trans 66.9 2 9E-05 21.3 1.8 35 30-64 37-76 (111)
190 1i1g_A Transcriptional regulat 66.4 4.1 0.00018 19.0 3.3 31 23-55 11-41 (141)
191 3lsg_A Two-component response 65.9 5.2 0.00023 18.2 3.7 27 32-58 19-45 (103)
192 2zhg_A Redox-sensitive transcr 65.7 2.5 0.00011 20.7 2.1 27 32-60 11-37 (154)
193 1zug_A Phage 434 CRO protein; 65.5 2.1 9.4E-05 21.2 1.7 32 23-57 10-41 (71)
194 2g7u_A Transcriptional regulat 65.2 5.6 0.00025 17.9 3.8 38 18-56 13-53 (257)
195 2o0y_A Transcriptional regulat 65.0 4.7 0.00021 18.5 3.4 38 17-55 21-61 (260)
196 1fse_A GERE; helix-turn-helix 64.9 2.7 0.00012 20.4 2.1 25 31-55 25-49 (74)
197 1utx_A CYLR2; DNA-binding prot 64.6 1.2 5.1E-05 23.2 0.2 38 32-69 14-51 (66)
198 2pg4_A Uncharacterized protein 64.6 4.1 0.00018 18.9 3.0 44 15-62 15-58 (95)
199 1ub9_A Hypothetical protein PH 64.5 3.9 0.00017 19.1 2.9 36 13-54 17-52 (100)
200 3ihu_A Transcriptional regulat 64.3 6 0.00027 17.7 4.5 50 1-50 2-57 (222)
201 2fjr_A Repressor protein CI; g 64.1 3.2 0.00014 19.7 2.4 32 23-56 13-44 (189)
202 2ef8_A C.ECOT38IS, putative tr 64.1 3.8 0.00017 19.2 2.8 46 11-59 5-50 (84)
203 1r8d_A Transcription activator 63.4 2.8 0.00012 20.3 2.0 21 33-53 3-23 (109)
204 3bs3_A Putative DNA-binding pr 63.0 2.4 0.00011 20.8 1.6 47 17-66 11-57 (76)
205 1q06_A Transcriptional regulat 63.0 2.9 0.00013 20.1 2.0 26 33-60 1-26 (135)
206 2jpc_A SSRB; DNA binding prote 62.6 2.6 0.00012 20.5 1.7 25 31-55 12-36 (61)
207 3f6v_A Possible transcriptiona 62.3 1.9 8.3E-05 21.6 0.9 39 9-54 55-93 (151)
208 2dbb_A Putative HTH-type trans 62.0 5.4 0.00024 18.0 3.2 37 12-54 9-45 (151)
209 2hi3_A Homeodomain-only protei 61.8 5.3 0.00023 18.1 3.2 53 1-57 1-55 (73)
210 3mlf_A Transcriptional regulat 61.7 2.8 0.00012 20.3 1.7 39 31-69 35-73 (111)
211 3gpv_A Transcriptional regulat 61.4 3 0.00013 20.0 1.9 27 26-52 8-36 (148)
212 2bnm_A Epoxidase; oxidoreducta 61.3 3.6 0.00016 19.4 2.2 26 29-54 20-45 (198)
213 1wh5_A ZF-HD homeobox family p 61.2 4.9 0.00022 18.3 2.9 29 28-56 44-72 (80)
214 1x3u_A Transcriptional regulat 61.2 3.4 0.00015 19.6 2.1 26 30-55 29-54 (79)
215 2vn2_A DNAD, chromosome replic 61.2 6.8 0.0003 17.3 3.9 46 7-54 28-73 (128)
216 2v79_A DNA replication protein 60.9 6.1 0.00027 17.6 3.4 36 18-53 37-72 (135)
217 3c57_A Two component transcrip 60.8 3.5 0.00016 19.4 2.1 25 31-55 41-65 (95)
218 1p4w_A RCSB; solution structur 60.7 3.4 0.00015 19.6 2.0 25 31-55 48-72 (99)
219 2krf_A Transcriptional regulat 60.6 3.6 0.00016 19.4 2.1 24 31-54 26-49 (73)
220 3kz3_A Repressor protein CI; f 60.4 2.7 0.00012 20.3 1.5 33 32-64 25-57 (80)
221 1je8_A Nitrate/nitrite respons 60.2 3.7 0.00016 19.3 2.1 24 31-54 35-58 (82)
222 3clc_A Regulatory protein; pro 60.0 2.7 0.00012 20.4 1.4 42 15-59 10-51 (82)
223 1or7_A Sigma-24, RNA polymeras 59.8 4.1 0.00018 19.0 2.3 35 31-65 21-58 (194)
224 3eco_A MEPR; mutlidrug efflux 59.6 7.1 0.00032 17.1 3.5 26 25-50 40-65 (139)
225 2vz4_A Tipal, HTH-type transcr 59.5 3.5 0.00016 19.5 1.9 20 33-52 2-21 (108)
226 3cec_A Putative antidote prote 59.2 3 0.00013 20.0 1.6 39 23-64 25-63 (104)
227 2o8x_A Probable RNA polymerase 59.1 4.4 0.00019 18.7 2.4 31 23-53 22-52 (70)
228 3ivp_A Putative transposon-rel 58.4 4.1 0.00018 18.9 2.1 39 17-58 13-51 (126)
229 1y9q_A Transcriptional regulat 58.3 7.5 0.00034 16.9 4.4 57 8-67 2-59 (192)
230 3hh0_A Transcriptional regulat 58.3 3.8 0.00017 19.2 1.9 21 32-52 4-24 (146)
231 3mky_B Protein SOPB; partition 57.9 7.6 0.00034 16.9 3.5 37 17-54 26-64 (189)
232 2q0o_A Probable transcriptiona 57.9 2.5 0.00011 20.6 0.9 20 15-34 21-40 (236)
233 2kko_A Possible transcriptiona 57.8 5.6 0.00025 17.9 2.7 37 11-54 24-60 (108)
234 1z6r_A MLC protein; transcript 56.6 8 0.00036 16.7 4.2 41 11-53 11-51 (406)
235 1ji8_A Dissimilatory siroheme- 56.4 2.4 0.00011 20.8 0.6 45 12-57 50-94 (111)
236 2r1j_L Repressor protein C2; p 56.4 2 8.7E-05 21.4 0.2 29 31-59 17-45 (68)
237 3f6w_A XRE-family like protein 55.7 8.2 0.00037 16.6 4.3 46 11-59 9-54 (83)
238 1neq_A DNA-binding protein NER 55.1 5.5 0.00025 18.0 2.3 26 31-56 21-46 (74)
239 2auw_A Hypothetical protein NE 54.9 5.1 0.00023 18.2 2.1 24 32-55 103-126 (170)
240 3fmy_A HTH-type transcriptiona 54.6 4.8 0.00021 18.4 1.9 26 31-56 23-48 (73)
241 2jml_A DNA binding domain/tran 53.4 4.1 0.00018 19.0 1.4 22 31-52 4-25 (81)
242 3g7d_A PHPD; non heme Fe(II) d 53.2 7.7 0.00034 16.8 2.8 57 20-79 233-291 (443)
243 3g3z_A NMB1585, transcriptiona 53.1 9 0.0004 16.3 3.5 26 24-51 39-64 (145)
244 3kxa_A NGO0477 protein, putati 53.0 3.2 0.00014 19.8 0.9 29 31-59 80-108 (141)
245 2rnj_A Response regulator prot 52.7 4.2 0.00019 18.9 1.4 25 31-55 43-67 (91)
246 1akh_A Protein (mating-type pr 52.2 7.5 0.00033 16.9 2.6 41 14-57 16-57 (61)
247 2ecb_A Zinc fingers and homeob 52.0 8.3 0.00037 16.6 2.8 40 15-57 23-63 (89)
248 1c9b_A General transcription f 52.0 9.4 0.00042 16.2 3.4 40 13-53 46-86 (207)
249 1r71_A Transcriptional repress 51.9 9.4 0.00042 16.2 3.8 30 22-54 45-74 (178)
250 3cta_A Riboflavin kinase; stru 51.0 9.7 0.00043 16.1 3.3 30 26-55 21-50 (230)
251 2ict_A Antitoxin HIGA; helix-t 51.0 3 0.00013 20.0 0.4 39 23-64 15-53 (94)
252 2k9l_A RNA polymerase sigma fa 50.4 9.9 0.00044 16.0 3.4 34 15-48 31-64 (76)
253 3klo_A Transcriptional regulat 50.1 6.6 0.00029 17.4 2.0 10 51-60 62-71 (225)
254 1l3l_A Transcriptional activat 49.8 4 0.00018 19.1 0.9 12 24-35 28-39 (234)
255 1x57_A Endothelial differentia 49.6 4.1 0.00018 19.0 0.9 29 31-59 25-53 (91)
256 1stz_A Heat-inducible transcri 49.5 10 0.00045 15.9 3.5 48 11-59 16-65 (338)
257 3hrs_A Metalloregulator SCAR; 49.4 8.4 0.00037 16.5 2.5 36 14-51 4-39 (214)
258 2jvl_A TRMBF1; coactivator, he 48.7 7.2 0.00032 17.0 2.1 48 20-67 37-84 (107)
259 2dg6_A Putative transcriptiona 48.6 7 0.00031 17.1 2.0 19 34-52 2-20 (222)
260 2eby_A Putative HTH-type trans 48.5 5.7 0.00026 17.8 1.6 35 30-64 22-56 (113)
261 2nyx_A Probable transcriptiona 48.4 11 0.00047 15.8 3.1 20 32-51 59-78 (168)
262 2w57_A Ferric uptake regulatio 47.9 10 0.00045 15.9 2.7 36 14-53 19-59 (150)
263 3by6_A Predicted transcription 47.3 9.5 0.00042 16.1 2.5 38 14-51 13-54 (126)
264 1ku3_A Sigma factor SIGA; heli 47.2 9 0.0004 16.3 2.4 39 8-50 10-48 (73)
265 3d1n_I POU domain, class 6, tr 47.1 10 0.00045 15.9 2.6 16 32-47 21-36 (151)
266 3bdd_A Regulatory protein MARR 47.0 11 0.00049 15.6 3.5 20 32-51 45-64 (142)
267 1bw5_A ISL-1HD, insulin gene e 46.9 11 0.00049 15.6 3.5 41 14-57 14-55 (66)
268 3c3w_A Two component transcrip 46.4 8.3 0.00037 16.6 2.1 10 19-28 15-24 (225)
269 1zx4_A P1 PARB, plasmid partit 46.0 11 0.00051 15.5 3.8 27 25-54 20-46 (192)
270 2ppx_A AGR_C_3184P, uncharacte 45.8 8.5 0.00038 16.5 2.1 26 31-56 42-67 (99)
271 3i9v_2 NADH-quinone oxidoreduc 45.8 6.3 0.00028 17.5 1.4 44 13-56 23-73 (181)
272 3gn5_A HTH-type transcriptiona 45.7 8 0.00036 16.7 1.9 26 31-56 83-108 (133)
273 1iuf_A Centromere ABP1 protein 45.3 12 0.00052 15.4 3.3 56 1-61 4-65 (144)
274 3bj6_A Transcriptional regulat 45.1 12 0.00052 15.4 3.5 14 137-150 71-84 (152)
275 3jw4_A Transcriptional regulat 44.6 8.7 0.00039 16.4 2.0 15 137-151 74-88 (148)
276 2hr3_A Probable transcriptiona 44.6 12 0.00053 15.4 3.7 20 32-51 50-69 (147)
277 2qww_A Transcriptional regulat 44.0 12 0.00054 15.3 3.5 16 135-150 70-85 (154)
278 3frw_A Putative Trp repressor 44.0 10 0.00046 15.9 2.3 17 34-50 60-76 (107)
279 2hdd_A Protein (engrailed home 43.9 11 0.0005 15.6 2.5 41 18-58 15-56 (61)
280 3eus_A DNA-binding protein; st 43.9 5.6 0.00025 17.9 0.9 41 16-59 14-54 (86)
281 2da5_A Zinc fingers and homeob 43.8 12 0.00054 15.3 2.8 41 14-57 18-59 (75)
282 2hoe_A N-acetylglucosamine kin 43.0 5.3 0.00024 18.1 0.7 19 33-51 34-52 (380)
283 1r8e_A Multidrug-efflux transp 42.9 8.8 0.00039 16.4 1.8 20 33-52 6-25 (278)
284 2ecc_A Homeobox and leucine zi 42.8 11 0.0005 15.6 2.3 43 14-59 14-57 (76)
285 2heo_A Z-DNA binding protein 1 42.8 13 0.00056 15.2 3.6 40 6-50 4-43 (67)
286 3c7j_A Transcriptional regulat 42.4 13 0.00057 15.1 4.8 39 12-50 26-67 (237)
287 1rzs_A Antirepressor, regulato 41.8 11 0.00049 15.7 2.1 19 34-52 12-30 (61)
288 3bro_A Transcriptional regulat 41.7 13 0.00058 15.0 3.7 19 32-50 50-68 (141)
289 2nnn_A Probable transcriptiona 41.5 13 0.00059 15.0 3.4 13 138-150 70-82 (140)
290 2gqq_A Leucine-responsive regu 41.5 3.7 0.00017 19.3 -0.3 38 13-56 14-51 (163)
291 2dmq_A LIM/homeobox protein LH 41.2 12 0.00054 15.3 2.3 42 14-58 18-60 (80)
292 2p7v_B Sigma-70, RNA polymeras 40.7 13 0.00059 15.0 2.4 35 13-50 9-43 (68)
293 2w48_A Sorbitol operon regulat 40.7 14 0.0006 14.9 3.5 35 15-53 8-42 (315)
294 2dmu_A Homeobox protein goosec 40.6 12 0.00051 15.5 2.1 41 15-58 19-60 (70)
295 2ewt_A BLDD, putative DNA-bind 40.5 14 0.0006 14.9 5.2 47 10-59 2-50 (71)
296 3e7l_A Transcriptional regulat 40.5 14 0.00061 14.9 4.6 22 32-53 32-53 (63)
297 2dn0_A Zinc fingers and homeob 40.0 11 0.0005 15.6 2.0 40 15-57 20-60 (76)
298 3bja_A Transcriptional regulat 40.0 14 0.00062 14.9 2.7 15 34-48 49-63 (139)
299 1z91_A Organic hydroperoxide r 39.7 14 0.00062 14.8 2.5 17 33-49 55-71 (147)
300 3bpv_A Transcriptional regulat 39.7 14 0.00062 14.8 3.6 20 32-51 43-62 (138)
301 2da4_A Hypothetical protein DK 39.3 8.8 0.00039 16.4 1.3 41 19-59 21-66 (80)
302 1x2m_A LAG1 longevity assuranc 38.3 12 0.00055 15.2 2.0 40 15-57 12-53 (64)
303 1qgp_A Protein (double strande 38.3 15 0.00065 14.7 3.2 38 10-51 12-50 (77)
304 3cmy_A HUP2, paired box protei 38.2 15 0.00065 14.7 2.3 42 13-57 12-54 (61)
305 3ech_A MEXR, multidrug resista 38.2 15 0.00065 14.7 3.0 13 138-150 69-81 (142)
306 1ais_B TFB TFIIB, protein (tra 38.0 15 0.00066 14.6 3.2 39 14-53 51-90 (200)
307 1ocp_A OCT-3; DNA-binding prot 37.8 9.3 0.00041 16.2 1.3 39 16-57 21-60 (67)
308 3dbw_A Transcriptional regulat 37.7 15 0.00067 14.6 4.6 38 13-50 21-61 (226)
309 1v4r_A Transcriptional repress 37.5 15 0.00067 14.6 3.3 51 1-54 3-57 (102)
310 2eth_A Transcriptional regulat 37.4 15 0.00067 14.6 3.3 17 33-49 59-75 (154)
311 2a61_A Transcriptional regulat 37.4 15 0.00067 14.6 3.5 17 33-49 48-64 (145)
312 2ogf_A Hypothetical protein MJ 37.4 8.5 0.00038 16.5 1.0 28 27-54 11-39 (122)
313 1jgg_A Segmentation protein EV 37.3 14 0.00063 14.8 2.1 41 15-58 13-54 (60)
314 2rdp_A Putative transcriptiona 36.9 15 0.00068 14.5 3.5 14 137-150 73-86 (150)
315 2di3_A Bacterial regulatory pr 36.9 15 0.00068 14.5 5.4 41 10-50 2-46 (239)
316 2iec_A Uncharacterized protein 36.3 7.2 0.00032 17.1 0.5 25 30-54 6-31 (131)
317 2vi6_A Homeobox protein nanog; 36.0 15 0.00067 14.6 2.1 40 15-57 15-55 (62)
318 2h1k_A IPF-1, pancreatic and d 35.8 15 0.00068 14.5 2.1 39 20-58 17-56 (63)
319 2da1_A Alpha-fetoprotein enhan 35.8 16 0.00071 14.4 2.7 41 14-57 18-59 (70)
320 3e6c_C CPRK, cyclic nucleotide 35.8 16 0.00071 14.4 4.6 56 42-97 105-160 (250)
321 2ek5_A Predicted transcription 35.6 16 0.00071 14.4 4.3 37 15-51 7-47 (129)
322 3cdh_A Transcriptional regulat 35.5 16 0.00071 14.4 2.7 19 32-50 57-75 (155)
323 2da2_A Alpha-fetoprotein enhan 35.3 15 0.00065 14.7 1.9 42 13-57 17-59 (70)
324 1uhs_A HOP, homeodomain only p 35.2 13 0.00059 15.0 1.7 41 15-58 13-55 (72)
325 1wi3_A DNA-binding protein SAT 35.0 16 0.00073 14.3 2.6 42 15-57 19-60 (71)
326 2qlz_A Transcription factor PF 34.9 1.7 7.6E-05 21.9 -2.9 50 1-57 1-50 (232)
327 2wv0_A YVOA, HTH-type transcri 34.7 17 0.00074 14.3 6.2 49 1-51 1-53 (243)
328 1mnm_C Protein (MAT alpha-2 tr 34.5 17 0.00074 14.2 2.1 40 15-57 39-82 (87)
329 3b73_A PHIH1 repressor-like pr 34.4 17 0.00074 14.2 2.5 39 11-55 12-52 (111)
330 3deu_A Transcriptional regulat 33.6 17 0.00076 14.1 3.5 14 137-150 85-98 (166)
331 3eet_A Putative GNTR-family tr 33.6 17 0.00076 14.1 4.7 39 13-51 30-72 (272)
332 1b72_A Protein (homeobox prote 33.4 15 0.00068 14.5 1.8 41 18-58 46-87 (97)
333 1le8_B Mating-type protein alp 33.3 17 0.00077 14.1 2.1 40 15-57 14-57 (83)
334 2d5v_A Hepatocyte nuclear fact 33.3 9 0.0004 16.3 0.6 24 24-50 16-40 (164)
335 3f3x_A Transcriptional regulat 33.3 17 0.00077 14.1 3.4 14 137-150 67-80 (144)
336 2frh_A SARA, staphylococcal ac 33.2 17 0.00077 14.1 2.5 15 137-151 70-84 (127)
337 3bd1_A CRO protein; transcript 33.0 17 0.00078 14.1 3.1 30 17-53 3-32 (79)
338 2e19_A Transcription factor 8; 32.5 12 0.00052 15.4 1.1 40 18-57 15-55 (64)
339 2k40_A Homeobox expressed in E 32.1 15 0.00066 14.6 1.6 41 14-57 12-53 (67)
340 1ntc_A Protein (nitrogen regul 31.9 18 0.00081 13.9 3.8 12 39-50 71-82 (91)
341 2i52_A Hypothetical protein; s 31.4 8.2 0.00036 16.6 0.1 19 36-54 16-34 (121)
342 2qq9_A Diphtheria toxin repres 31.4 18 0.00082 13.9 5.2 39 12-52 6-44 (226)
343 2pex_A Transcriptional regulat 31.4 18 0.00082 13.9 3.5 17 135-151 76-92 (153)
344 2dmt_A Homeobox protein BARH-l 31.0 19 0.00084 13.8 2.1 41 17-57 28-69 (80)
345 2kfs_A Conserved hypothetical 30.8 17 0.00077 14.1 1.7 26 32-57 31-56 (148)
346 2fe3_A Peroxide operon regulat 30.8 19 0.00084 13.8 3.9 21 32-52 37-62 (145)
347 2da7_A Zinc finger homeobox pr 30.7 19 0.00084 13.8 2.3 41 14-57 16-57 (71)
348 2e1o_A Homeobox protein PRH; D 30.0 19 0.00087 13.7 2.0 42 13-57 17-59 (70)
349 2vt3_A REX, redox-sensing tran 29.6 20 0.00088 13.7 5.2 53 1-54 1-58 (215)
350 2dms_A Homeobox protein OTX2; 29.3 20 0.00089 13.6 2.0 41 18-58 19-60 (80)
351 1tty_A Sigma-A, RNA polymerase 29.2 20 0.00089 13.6 2.4 26 24-49 30-55 (87)
352 3cjn_A Transcriptional regulat 29.0 20 0.0009 13.6 3.3 16 135-150 81-96 (162)
353 2o03_A Probable zinc uptake re 28.7 20 0.00091 13.6 3.7 35 13-52 12-51 (131)
354 3hsr_A HTH-type transcriptiona 28.6 20 0.00091 13.5 2.1 14 137-150 67-80 (140)
355 2fbi_A Probable transcriptiona 28.4 21 0.00092 13.5 3.0 20 32-51 50-69 (142)
356 1x2n_A Homeobox protein pknox1 28.0 21 0.00093 13.5 3.4 49 8-57 13-62 (73)
357 1fx7_A Iron-dependent represso 27.9 21 0.00093 13.5 5.2 38 12-51 6-43 (230)
358 2cra_A Homeobox protein HOX-B1 27.8 21 0.00094 13.4 2.0 41 14-57 18-59 (70)
359 1k61_A Mating-type protein alp 27.5 21 0.00095 13.4 2.1 43 15-57 10-53 (60)
360 2qne_A Putative methyltransfer 27.3 21 0.00095 13.4 5.1 57 6-64 24-82 (495)
361 3dkw_A DNR protein; CRP-FNR, H 27.2 22 0.00096 13.4 4.1 19 97-115 116-134 (227)
362 1b8i_A Ultrabithorax, protein 27.1 22 0.00096 13.4 2.1 42 16-57 30-72 (81)
363 3fym_A Putative uncharacterize 27.1 22 0.00096 13.4 2.2 20 31-50 15-34 (130)
364 2cue_A Paired box protein PAX6 27.1 22 0.00096 13.4 1.7 40 20-59 21-61 (80)
365 3boq_A Transcriptional regulat 26.1 22 0.001 13.2 6.9 21 31-51 61-81 (160)
366 2djn_A Homeobox protein DLX-5; 26.1 20 0.00091 13.5 1.4 40 15-57 19-59 (70)
367 1g2h_A Transcriptional regulat 25.9 23 0.001 13.2 1.9 19 33-51 34-52 (61)
368 3eyy_A Putative iron uptake re 25.9 23 0.001 13.2 4.1 34 13-52 20-58 (145)
369 3k7a_M Transcription initiatio 25.8 11 0.00049 15.6 0.0 17 34-50 188-204 (345)
370 3k0l_A Repressor protein; heli 25.7 23 0.001 13.2 3.8 12 139-150 79-90 (162)
371 1yz8_P Pituitary homeobox 2; D 25.5 23 0.001 13.1 1.6 42 14-58 14-56 (68)
372 1wh7_A ZF-HD homeobox family p 25.4 23 0.001 13.1 4.3 49 3-51 18-67 (80)
373 1bia_A BIRA bifunctional prote 25.0 23 0.001 13.1 2.1 40 13-58 6-45 (321)
374 1tc3_C Protein (TC3 transposas 24.9 23 0.001 13.2 1.5 34 15-55 11-44 (51)
375 2bv6_A MGRA, HTH-type transcri 24.9 24 0.001 13.1 2.8 17 33-49 52-68 (142)
376 2zdb_A Transcriptional regulat 24.8 24 0.0011 13.1 2.3 10 139-148 158-167 (195)
377 2da3_A Alpha-fetoprotein enhan 24.8 24 0.0011 13.1 2.4 40 15-57 29-69 (80)
378 1vz0_A PARB, chromosome partit 24.8 24 0.0011 13.1 3.3 13 18-30 47-59 (230)
379 2cqx_A LAG1 longevity assuranc 24.5 17 0.00075 14.2 0.7 39 16-57 21-61 (72)
380 1q4r_A Protein AT3G17210; cent 24.4 23 0.001 13.1 1.4 68 8-75 22-93 (112)
381 2cuf_A FLJ21616 protein; homeo 24.2 24 0.0011 13.0 1.6 40 18-57 19-74 (95)
382 1nk2_P Homeobox protein VND; h 24.0 24 0.0011 13.0 2.0 41 18-58 21-62 (77)
383 2gau_A Transcriptional regulat 23.9 24 0.0011 12.9 4.6 16 99-114 118-133 (232)
384 1jgs_A Multiple antibiotic res 23.7 25 0.0011 12.9 3.5 17 33-49 49-65 (138)
385 2jt1_A PEFI protein; solution 23.6 25 0.0011 12.9 3.7 34 14-47 6-39 (77)
386 1du6_A PBX1, homeobox protein 23.5 18 0.00079 14.0 0.7 47 9-56 10-57 (64)
387 2o0m_A Transcriptional regulat 23.3 13 0.00059 15.0 0.0 37 12-54 20-56 (345)
388 2hs5_A Putative transcriptiona 23.3 25 0.0011 12.8 4.7 38 13-50 29-69 (239)
389 2fu4_A Ferric uptake regulatio 23.3 25 0.0011 12.8 3.1 36 13-52 18-58 (83)
390 2gmg_A Hypothetical protein PF 22.8 22 0.00098 13.3 1.1 28 11-45 10-37 (105)
391 1z05_A Transcriptional regulat 22.1 26 0.0012 12.7 4.5 29 21-51 44-72 (429)
392 1ahd_P Antennapedia protein mu 22.1 26 0.0012 12.7 2.7 42 14-58 13-55 (68)
393 1tlh_B Sigma-70, RNA polymeras 22.0 14 0.00064 14.7 -0.0 26 25-50 31-56 (81)
394 2dmp_A Zinc fingers and homeob 21.8 27 0.0012 12.6 2.3 39 20-58 27-66 (89)
395 2k9m_A RNA polymerase sigma fa 21.7 23 0.001 13.1 1.0 33 14-46 21-53 (130)
396 1s3j_A YUSO protein; structura 21.7 27 0.0012 12.6 7.6 13 137-149 68-80 (155)
397 2gxg_A 146AA long hypothetical 21.6 27 0.0012 12.6 3.1 16 33-48 51-66 (146)
398 2pjp_A Selenocysteine-specific 21.5 27 0.0012 12.6 2.0 33 14-49 5-37 (121)
399 2fbh_A Transcriptional regulat 21.5 27 0.0012 12.6 3.6 14 137-150 69-82 (146)
400 3lhi_A Putative 6-phosphogluco 21.0 28 0.0012 12.5 3.7 30 49-78 4-33 (232)
401 2q1z_A RPOE, ECF SIGE; ECF sig 20.9 5.7 0.00025 17.8 -2.3 23 48-71 43-65 (184)
402 2ev1_A Hypothetical protein RV 20.8 28 0.0012 12.5 2.4 30 22-52 69-98 (222)
403 2fxa_A Protease production reg 20.7 28 0.0012 12.5 2.9 21 31-51 61-81 (207)
404 3fnd_A Chitinase; TIM-barrel, 20.1 29 0.0013 12.4 2.1 27 10-36 86-112 (312)
405 1zq3_P PRD-4, homeotic bicoid 20.1 29 0.0013 12.4 1.6 39 20-58 16-55 (68)
No 1
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=99.90 E-value=2.8e-21 Score=182.75 Aligned_cols=191 Identities=18% Similarity=0.281 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.++||++|++||.++|.++||+++||++||++||||+||||+||+||++|+.+++....+.+.+.+..... ...++.++
T Consensus 6 ~~~~~~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~-~~~~~~e~ 84 (206)
T 1vi0_A 6 KRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIK-EKATAKEK 84 (206)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_conf 48999999999999999839340779999999598875798608987999999999887799998887641-22012689
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.+...+|....+.........+.....+..........+.+++..++..|+++++.|++..+..+.+++.+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~~~~~~~a~~i~~~~~~ 164 (206)
T 1vi0_A 85 LALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDE 164 (206)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999986800899999987316778888888899999899999999999859988634299999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999963389907789999999889999999999999999700169
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
+...|........ ....++.+++++.+||+++
T Consensus 165 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~gl~~~ 196 (206)
T 1vi0_A 165 TVTTWVMNDQKYD---------------LVALSNSVLELLVSGIHNK 196 (206)
T ss_dssp HHHHHHHTTTCSC---------------GGGGHHHHHHHHHHCSBCC
T ss_pred HHHHHHHCCCCCC---------------HHHHHHHHHHHHHHHCCCC
T ss_conf 9999985689999---------------9999999999999738899
No 2
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=99.89 E-value=6.5e-21 Score=179.92 Aligned_cols=189 Identities=20% Similarity=0.256 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
..++||++|++||.++|.++||+++||++||++||||+||||+||+||++|+.+++.+..+.+.+.+...... ..++.+
T Consensus 28 ~~~~~R~~Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~yF~sK~~L~~a~~~~~~~~~~~~l~~~~~~-~~~~~~ 106 (218)
T 3dcf_A 28 TGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAG-PGSPGE 106 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHH
T ss_conf 8788999999999999998593517799999997909868868759999999999999999999999998726-777189
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+..++..+..+...++.....++.......+.....+..........+..++..+...|+++ +.|+..++..+.+++.
T Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~-~~d~~~~a~~i~~~~~ 185 (218)
T 3dcf_A 107 RIHALLVEHTRTILRNLDANTLFYNERGLLSPEREREMRKREREYTEIMQRLYAEGVATGELL-DVDPTVATATLLGAAI 185 (218)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBC-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHH
T ss_conf 999999999999987847999999988635989999999999999999999999999869999-9999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999996338990778999999988999999999999999970016
Q T0575 169 ELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
++..++....... .+..++.+.+++.+||++
T Consensus 186 ~~~~~~~~~~~~~----------------~~~~~~~~~~lll~gl~~ 216 (218)
T 3dcf_A 186 WTYRWYDPEGRLS----------------ADEVVEQITRLLLNGYRR 216 (218)
T ss_dssp THHHHCCTTSSSC----------------HHHHHHHHHHHHHHCSBC
T ss_pred HHHHHHCCCCCCC----------------HHHHHHHHHHHHHHHHCC
T ss_conf 9999854689999----------------999999999999998657
No 3
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=99.89 E-value=1.1e-20 Score=178.16 Aligned_cols=197 Identities=18% Similarity=0.318 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHH
Q ss_conf 889999999999998749103547999998477854554026888899999999999999999987521-5566468999
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP-ASTTDMFAYL 90 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 90 (216)
+||++|+++|.++|.++||+++||++||++||||+||||+||+||++|+.+++....+.+...+..... ....++.+.+
T Consensus 5 ~rR~~Il~aA~~l~~~~G~~~~s~~~Ia~~agis~~tlY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (202)
T 2id6_A 5 SKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEKLQKEFENFLMKNRNRDIFDFM 84 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999999873935287999999889099999778489999999999999998799999987426577699999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999998708089999999986164048999999999999999999999986488999999889999999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTEL 170 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (216)
..++..++++...+|....++.... ...+...+............+.+.+.+++..|.+.++.|++..+..+.+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
T 2id6_A 85 ERWIEKKLEYSASHPEEADFLITLV-SVDEGLRKRILLDLEKSQRVFFDFVREKLKDLDLAEDVTEEIALKFLMWFFSGF 163 (202)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHGGGG-GSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999997969999999987-659778999999999999999999999998399999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999996338990778999999988999999999999999970016
Q T0575 171 GNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
...+.......+.... + ....+.+.++.+++++.+||+|
T Consensus 164 ~~~~~~~~~~~~~~~~-~-----~~~~l~~~i~~~l~~~~~Gl~k 202 (202)
T 2id6_A 164 EEVYLRTYQGKPELLK-R-----DMNTLVEEVKVMLRILKKGMTK 202 (202)
T ss_dssp HHHHHHHTTTCHHHHH-H-----HHHHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHCCCCHHHHH-H-----HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999971668824589-9-----9999999999999999960809
No 4
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=99.88 E-value=2.7e-20 Score=175.11 Aligned_cols=192 Identities=17% Similarity=0.331 Sum_probs=149.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+++ +.||++|++||.++|.++||+++||++||++||||++|||+||+||++|+.+++....+.+...+.....
T Consensus 4 m~k~~-----~~rre~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~ 78 (197)
T 2f07_A 4 MPKQT-----SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLH 78 (197)
T ss_dssp CCCCC-----CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCC-----HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99985-----7699999999999999739140659999998786911577765999999999999999999999999861
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
...++.+.+..++..++.+...++....+......... ..+............+.+++.++++.|++++++|++..+
T Consensus 79 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~a 155 (197)
T 2f07_A 79 -GDEDFWTVLDILIDETFLITERHKDIIVLCYSGLAIDH--SMEKWETIYQPYYSWLEKIINKAIANHEVTEGINSKWTA 155 (197)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHTTSBCTTCCHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf -58999999999999999999879189999998704860--389999999999999999999999859999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999633899077899999998899999999999999997001
Q T0575 161 FVLNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMR 214 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~ 214 (216)
..+.+++.++...+........ ......+.+.++|.+||.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~i~~~l~~~lg 195 (197)
T 2f07_A 156 RTIINLVENTAERFYIGFEQDE--------------NVEVYKKEIFTFLKRSLG 195 (197)
T ss_dssp HHHHHHHHHHHHHHHTSCCCSS--------------CHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHCCCCCC--------------CHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999984799703--------------399999999999998745
No 5
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=99.88 E-value=3.9e-21 Score=181.64 Aligned_cols=201 Identities=13% Similarity=0.181 Sum_probs=151.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.+++|++||+||.++|.++||+++||++||++||||+||||+||+||++|+.+++....+.+...+..... ...++.+.
T Consensus 28 ~~~tr~~IL~aA~~lf~~~G~~~~s~~~IA~~agVs~~t~Y~hF~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~ 106 (230)
T 2iai_A 28 DTYTPETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALDELFGILDEEHA-RVGTAAER 106 (230)
T ss_dssp ---CCSCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHTTSHHH-HSSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHH
T ss_conf 67999999999999999859263719999998582831253068999999999999999999999999985-21208999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.+...++....++.... ..+................+.+++.++++.|.+++++|+...+..+.+++.+
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~d~d~~~~~~~l~~~l~~ 184 (230)
T 2iai_A 107 LEYVVRRMVEVLMAELPYVTLLLRVR--GNTGTERWALERRREFDHRVAALLKDAAAEGDVRADVEVRLATRLVFGMINS 184 (230)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999986949989999975--2674479999999999999999999999859999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996338990778999999988999999999999999970016
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+..|+ ........ ..............+..++.+.+++.+|||+
T Consensus 185 ~~~w~-~~~g~~~~-~~~~~~~~~~~~~~~~~~d~~~~l~l~Glr~ 228 (230)
T 2iai_A 185 IVEWY-RPEGPDGR-SDASGASGVSGAGEREVVDAVARLVFGGLRK 228 (230)
T ss_dssp HHHHC-CCC------------CCSSCHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHH-CCCCCHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99995-36783147-8875102467789999999999999998544
No 6
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=99.88 E-value=1.3e-19 Score=169.81 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=144.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|++.+...-++++|++|++||.++|.++||+++|+++||++||||+|+||+||+||++|+.+++.+..+.+...+.....
T Consensus 1 M~prr~~~~~~~tr~~Il~AA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~~~~~~~ 80 (200)
T 2hyj_A 1 MSPRRSAAEAQATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDFWHRVVEPAL 80 (200)
T ss_dssp -------CTHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96899855599999999999999999749464789999998781978895664799999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55664689999999999999870808----99999999861640489999999999999999999999864889999998
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPR----LAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDA 156 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 156 (216)
. ..++.+.+...+..+......++. .............+...+.+..........+..++.++++.|.++++.|+
T Consensus 81 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 159 (200)
T 2hyj_A 81 A-EPPGLRRLRAVCANSVGYLEEPLLPGGCLLTAALSEYDGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELPAGFDV 159 (200)
T ss_dssp G-SCTTHHHHHHHHHHHHHHHHSCSSTTSCHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 2-998788999999999999961412343699999987525999999999999999999999999999985999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 89999999999999999996338990
Q T0575 157 DTAAFVLNVVFTELGNHLIERFAVNP 182 (216)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (216)
..++..+.+++.+....+........
T Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~ 185 (200)
T 2hyj_A 160 EQALFEIVAAGLALNAAMQLQHDRTA 185 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999999999987099627
No 7
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=99.88 E-value=5.4e-20 Score=172.82 Aligned_cols=178 Identities=18% Similarity=0.199 Sum_probs=138.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|++++.. -++++|++|+++|.++|.++||+++||++||++||||+||||+||+||++|+.++++...+.+.+.......
T Consensus 4 M~r~~~~-~~~~tr~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~yF~~K~~L~~~v~~~~~~~~~~~~~~~~~ 82 (220)
T 3lhq_A 4 MARKTKQ-QALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQA 82 (220)
T ss_dssp HHHHHHH-HSHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8898610-499999999999999999849140779999998588933477618999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5566468999999999999987080899999999861--6---4048999999999999999999999986488999999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYD--D---VPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLD 155 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 155 (216)
....++.+.+...+..++.....++............ . ..................+...+..++..|+++++++
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 162 (220)
T 3lhq_A 83 KFPDDPLSVLREILVHILEATVTEERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLL 162 (220)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 17656159999999999999851588888999999888743000457999999999999999999999998699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 889999999999999999996338
Q T0575 156 ADTAAFVLNVVFTELGNHLIERFA 179 (216)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~ 179 (216)
+..++..+.+++.|+...|+....
T Consensus 163 ~~~~a~~~~~~~~g~~~~~l~~~~ 186 (220)
T 3lhq_A 163 TRRAAILMRSFISGLMENWLFAPQ 186 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999986899
No 8
>3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp}
Probab=99.88 E-value=2.5e-19 Score=167.68 Aligned_cols=198 Identities=17% Similarity=0.241 Sum_probs=156.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+... ..++++|++|++||.++|.++||+++|+++||++||||+||||+||+||++|+.+++++..+.+...+.....
T Consensus 2 mp~p~~-~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~~~~~~~ 80 (202)
T 3lwj_A 2 MPIPLE-KQNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQIISSISEYYL 80 (202)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 599987-6689999999999999998719340769999998790887898885999999999999999987888998751
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
...++.+.+..++..++.....++....++... ....+................+..++..+++.|.++ +.+++..+
T Consensus 81 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~~~ 157 (202)
T 3lwj_A 81 -VEKDLYERFIETKRLTMEVFAQNETLSEIYSRV-AGSSAPIDQCLKQFEDRLLEFYSRNIEYGIKKGVFK-NVPVSPIA 157 (202)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC-CCCHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHH
T ss_conf -245589999999999999876067999999998-606876899999999999999999999999869999-99999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999996338990778999999988999999999999999970016
Q T0575 161 FVLNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
..+.+++.+....|.......+. .+...+..+++++..|+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-------------e~~~~~~~~~~~~~~G~~a 199 (202)
T 3lwj_A 158 HSILAIEKFSLYKWVVLKAITKE-------------EMIEMVLSFHKTLAVGLLV 199 (202)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCHH-------------HHHHHHHHHHHHHHHCSCS
T ss_pred HHHHHHHHHHHHHHHHCCCCCHH-------------HHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999864899999-------------9999999999999806836
No 9
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1
Probab=99.88 E-value=2.8e-20 Score=175.03 Aligned_cols=195 Identities=16% Similarity=0.266 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
.+++||++|++||.++|.++||+++|+++||++||||+||||+||+|||+|+.+++....+.+...+... ....++.+
T Consensus 15 ~~~~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~agvs~~tiY~yF~sKe~L~~~~~~~~~~~~~~~~~~~--~~~~~~~e 92 (212)
T 1pb6_A 15 AVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAF--REDFAPLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHHHC--CTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHH
T ss_conf 5388999999999999998591518899999997949888978778999999987899999999999975--05698789
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+..++..+..+...+|....++........+................+..++..+++.|.+.+ .|+..+...+.+.+.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~ 171 (212)
T 1pb6_A 93 AIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAP-IDPQHLIFMIWASTQ 171 (212)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHTTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHH
T ss_conf 9999999999999978499999999986168888999999999999999999999998599999-999999999999999
Q ss_pred HHHHHHHH--H-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999996--3-389907789999999889999999999999999700169
Q T0575 169 ELGNHLIE--R-FAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 169 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
+....... . ..... ......+..++.+.+++.+||++|
T Consensus 172 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~ll~Gl~pr 212 (212)
T 1pb6_A 172 HYADFAPQVEAVTGATL----------RDEVFFNQTVENVQRIIIEGIRPR 212 (212)
T ss_dssp HHHHTHHHHHHHHSCCT----------TSHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHCCCCC----------CCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998999998738987----------887999999999999999766889
No 10
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=99.87 E-value=1.7e-20 Score=176.62 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=146.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 78878889999999999998749103547999998477854554026888899999999999999999987521556646
Q T0575 7 FNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDM 86 (216)
Q Consensus 7 ~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (216)
...+.+||++|+++|.++|.++||+++||++||++||||++|||+||+||++|+.++++...+.+...+..... ...++
T Consensus 9 ~~~~~~rr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~Ll~~v~~~~~~~~~~~~~~~~~-~~~~~ 87 (204)
T 2ibd_A 9 TSGKSGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVA-SGLDS 87 (204)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHH
T ss_conf 65647999999999999999739030679999998689956156747999999999999999999999999862-02004
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 8999999999999987080899999999861-640489999999999999999999999864889999998899999999
Q T0575 87 FAYLRWLLDVGIQFQFHNPRLAQIAYKALYD-DVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNV 165 (216)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~ 165 (216)
.+.+..++..++.....++....++...... ..+.....+..........+..++.++++.|.++++.++...+.++.+
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~ 167 (204)
T 2ibd_A 88 RATLEALVTTSYEAIDASHSAVAIYQDEVKHLVANERFTYLSELNTEFRELWMGVLEAGVKDGSFRSDIDVELAFRFLRD 167 (204)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHTCGGGTTSGGGHHHHHHHHHHHHHHHHHHHHHHHTTSBCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 89999999999999985958999999998845868899999999999999999999999985999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999996338990778999999988999999999999999970016
Q T0575 166 VFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+..+...++....... ....++.+.+++.+||.+
T Consensus 168 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~Gl~a 201 (204)
T 2ibd_A 168 TAWVAVRWYRPGGSVT----------------VDTVAKQYLSIVLDGLAS 201 (204)
T ss_dssp HSSGGGGTCCTTSSSC----------------HHHHHHHHHHHHHHCSBC
T ss_pred HHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHHHHCC
T ss_conf 9999999972589999----------------999999999999988479
No 11
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=99.87 E-value=3.6e-20 Score=174.20 Aligned_cols=201 Identities=14% Similarity=0.174 Sum_probs=151.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 67887888999999999999874910354799999847785455402688889999999999999999998752155664
Q T0575 6 FFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTD 85 (216)
Q Consensus 6 ~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (216)
..+.++.||++|++||.++|.++||+++||++||++||||+|++|+||+||++|+.+++.+..+.+...+..... ...+
T Consensus 5 ~~~~~e~~re~Il~aA~~lf~e~G~~~~s~~~IA~~agvs~~tlY~hF~sKe~L~~~v~~~~~~~~~~~~~~~~~-~~~~ 83 (216)
T 3f0c_A 5 KIKNEDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILN-SGID 83 (216)
T ss_dssp -----CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT-SCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
T ss_conf 444716899999999999999749040789999998791987897775999999999999999999999999984-6999
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 68999999999999987080899999999861640489999999999999999999999864889999998899999999
Q T0575 86 MFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNV 165 (216)
Q Consensus 86 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~ 165 (216)
+.+.+..++.....+....+....+.........+................+.+++..++..|.+++. ++...+..+..
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~~~a~~~~~ 162 (216)
T 3f0c_A 84 ATALLKKYVKLRSLHFRHLLNLSKLRSDFFHNTKPVFAKAFESFKQKEVEIVAGIIQYGITTKEFKRG-NKHENAEFLVH 162 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHH
T ss_conf 99999999999999999837689999999851859899999999999999999999999986998999-99999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999996338990778999999988999999999999999970016
Q T0575 166 VFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
.+.++...........+.+.. ....+.+.+..+++++.+||+.
T Consensus 163 ~i~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~gi~~ 205 (216)
T 3f0c_A 163 LLLGVRMVKLKYKEINDFDES-------DYEDLDKNMCKVAGMFLKEIQT 205 (216)
T ss_dssp HHHHHHHHHHHHSCSSSCCSH-------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999998650588846-------8999999999999999987168
No 12
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=99.87 E-value=2.3e-20 Score=175.71 Aligned_cols=193 Identities=21% Similarity=0.245 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
.++|++|+++|.++|.++||+++||++||+++|||+||||+||+||++|+.+++++..+.+..... . .....++.+.+
T Consensus 7 ~~tR~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~~v~~~~~~~~~~~~~-~-~~~~~~~~~~l 84 (206)
T 3dew_A 7 ADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDD-I-RGQAGDPLAVM 84 (206)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHHHGGGGCCHH-H-HTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-H-HCCCCCHHHHH
T ss_conf 999999999999999985925288999999959499999888489999998778999999888887-5-10000479999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999998708089999999986164048999999999999999999999986488999999889999999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTEL 170 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (216)
..++..++.+...+|....++........+................+.+.+..++..|.++++.++...+..+.+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 164 (206)
T 3dew_A 85 TAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNYF 164 (206)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHSCCHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999875799999999885378778999999999999999999999998599999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999996338990778999999988999999999999999970016
Q T0575 171 GNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
...+.......... .......++.+++++.+||.+
T Consensus 165 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~Gl~~ 199 (206)
T 3dew_A 165 FLSTLATEGLTSHS----------PDQDEELIRQYVAIFTRGIMA 199 (206)
T ss_dssp HHTGGGSTTTSCCC----------GGGHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999871245789----------203999999999999987489
No 13
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=99.87 E-value=3.5e-19 Score=166.52 Aligned_cols=173 Identities=14% Similarity=0.228 Sum_probs=133.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|+|+....-.++||++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.+++....+.+.+.+.....
T Consensus 1 M~p~~~~~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tlY~~F~~K~~L~~av~~~~~~~~~~~~~~~~~ 80 (205)
T 1rkt_A 1 MSPKVTKEHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAE 80 (205)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 95898667899999999999999999819240889999998589965210168999999999999999999999998752
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 5566468999999999999987080899---9999998616404899999999999999999999998648899999988
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLA---QIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDAD 157 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 157 (216)
..++.+.+..++.........++... ...........+.....+..........+..++..+++.|.++++.|++
T Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 158 (205)
T 1rkt_A 81 --HQSVWASISSYLDELTEGLRDVADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQPVQPLA 158 (205)
T ss_dssp --TSCHHHHHHHHHHHHHHHTTTGGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf --698799999999999999998564432689999998633657999999999999999999999999849999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q T0575 158 TAAFVLNVVFTELGNHLI 175 (216)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (216)
.++..+.+++.++...+.
T Consensus 159 ~~a~~~~~~~~g~~~~~~ 176 (205)
T 1rkt_A 159 TIAKFFLNMNDGIIQNAL 176 (205)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998
No 14
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=99.87 E-value=4.6e-20 Score=173.36 Aligned_cols=194 Identities=14% Similarity=0.200 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
..+|++|+++|.++|.++||+++||++||++||||+|+||+||+||++|+.+++++..+.+...+.........++.+.+
T Consensus 15 ~~~R~~Il~aA~~lf~~~G~~~~t~~~Ia~~agvs~~tiY~yF~sK~~L~~av~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (213)
T 2qtq_A 15 PGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKDDMSPEAKL 94 (213)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 68999999999999997394416799999997939889998866499999989999999999998886414678899999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999998708089999999986164-04899999999999999999999998648899999988999999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYDDV-PLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
..++..++.+...+|....++........ +................+..++.++++.|.+++ .|+......+.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~-~d~~~~~~~i~~~~~~ 173 (213)
T 2qtq_A 95 RRHISKCIDTYYDYPYLNRLLMRLVRDSDEAEAKRIADQYLLPLHRAYNRFIGEGVKAGVFRP-INPQLFYFTVTGAADR 173 (213)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSBCS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf 999999999999892599999999860782889999999987778999999999998699999-9999999999999999
Q ss_pred HHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999---6338990778999999988999999999999999970016
Q T0575 170 LGNHLI---ERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+..... ....... .....+...++.+++++.+||.+
T Consensus 174 ~~~~~~~~~~~~~~d~----------~~~~~~~~~~~~~~~~l~~gl~a 212 (213)
T 2qtq_A 174 FFSARLVLKHCFDQDT----------LTEQLRDSYREHTVDFIMAGILA 212 (213)
T ss_dssp HHHHHHHHHHHHCCCC----------SCGGGHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHCCCCC----------CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9988999997638775----------89999999999999999999865
No 15
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=3.8e-19 Score=166.28 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=142.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|.+++. ..++++|++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.+++....+.+.+.+.....
T Consensus 1 MaR~~~-~~~~~tr~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 79 (219)
T 2w53_A 1 MARKTK-EDTQATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTST 79 (219)
T ss_dssp -------CGGGCCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 959960-1599999999999999999859240779999998488954255328999999998999999999998753002
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 556646899999999999998708089999999986----1640489999999999999999999999864889999998
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALY----DDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDA 156 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 156 (216)
....++.+.+...+..++.....++....+...... ...+...+............+..++..+++.|.++++.|+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~ 159 (219)
T 2w53_A 80 DQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASANTRVLTEMQQAGFRDALDRMERALRRARDLGQLREGADP 159 (219)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 55545089999999999999986878889999999985112759999999999999999999999999985999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999999999999999963389
Q T0575 157 DTAAFVLNVVFTELGNHLIERFAV 180 (216)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~ 180 (216)
+.++..+.+++.|+...|+.....
T Consensus 160 ~~~a~~~~~~~~g~~~~~~~~~~~ 183 (219)
T 2w53_A 160 KIAARMLHATVLGVLHGAMVEPEL 183 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999999868886
No 16
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=99.86 E-value=2e-19 Score=168.41 Aligned_cols=178 Identities=19% Similarity=0.178 Sum_probs=136.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|++++... ++++|++|+++|.++|.++||+++||++||++||||+||||+||+||++|+.++++...+.....+.....
T Consensus 1 M~rr~~~~-~~~tR~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~ 79 (210)
T 2xdn_A 1 MVRRTKEE-AQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLAETHDHLARASES 79 (210)
T ss_dssp ----CCHH-HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHHHHHTTHHHHHHHTC
T ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97997105-99999999999999999759140669999999891988997886999999998899999999999998760
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5566468999999999999987080899999999861-----64048999999999999999999999986488999999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYD-----DVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLD 155 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~ 155 (216)
....++.+.+...+..++.....++....+....... ..+...+............+...+..++..|.++++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 159 (210)
T 2xdn_A 80 EDEVDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELD 159 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHSCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 22377799999999999999875879888999988888725334999999999999999999999999998599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 889999999999999999996338
Q T0575 156 ADTAAFVLNVVFTELGNHLIERFA 179 (216)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~ 179 (216)
+...+..+.+++.|+...|+....
T Consensus 160 ~~~~a~~~~~~~~G~~~~~l~~~~ 183 (210)
T 2xdn_A 160 AERAAVAMFAYVDGLIRRWLLLPD 183 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999987899
No 17
>3kz9_A SMCR; transcriptional regulator, quorum sensing, DNA-binding, transcription regulation, transcription regulator; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=99.86 E-value=1.8e-19 Score=168.71 Aligned_cols=162 Identities=12% Similarity=0.162 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
.+++||++|++||.++|.++||+++||++||++||||+||||+||+||++|+.++++...+.+...+..... ...++.+
T Consensus 14 ~~~~rr~~Il~aa~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 92 (206)
T 3kz9_A 14 SPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNID-LDLHAKE 92 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCC-TTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHH
T ss_conf 889999999999999999719220569999998786913115633999999999999999999999999860-5999999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+..++..++.+...++....+++.......+................+..++..++..|.+.++.++..++..+.+++.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 172 (206)
T 3kz9_A 93 NIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPEDLANLFHGICY 172 (206)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTCCCTTTHHHHHHHTHHHHHHHHHHHHHHHHTTSBCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999998794999999998760689999999999999999999999999985999999989999999999999
Q ss_pred HHH
Q ss_conf 999
Q T0575 169 ELG 171 (216)
Q Consensus 169 ~~~ 171 (216)
++.
T Consensus 173 ~~~ 175 (206)
T 3kz9_A 173 SLF 175 (206)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 18
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=99.86 E-value=9.3e-19 Score=163.27 Aligned_cols=166 Identities=17% Similarity=0.178 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHH
Q ss_conf 7888999999999999874910354799999847785455402688889999999999999999998752155-664689
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPAS-TTDMFA 88 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (216)
+++||++||+||.++|.++||+++|+++||++||||+++||+||+||++|+.++++...+.+...+....... ..++.+
T Consensus 42 ~~~rR~~IL~AA~~lf~~~G~~~~Tv~~IA~~AGVsk~tlY~~F~sKe~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (256)
T 3g1l_A 42 GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDREN 121 (256)
T ss_dssp CTHHHHHHHHHHHHHTTTSCGGGCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 88999999999999999839231629999999790998883676888999999999999999999999872767788999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.++.++..++++...++.....+... ....+...+.+..........+.+++..+++.|.++++.++..++..+.+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~~~~~~~~~~a~~l~~~~~ 200 (256)
T 3g1l_A 122 MWRTGINVFFETFGSHKAVTRAGQAA-RATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNE 200 (256)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999998682999999998-51699999999999999999999999999985999999999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999996
Q T0575 169 ELGNHLIE 176 (216)
Q Consensus 169 ~~~~~~~~ 176 (216)
++......
T Consensus 201 ~~~~~~~~ 208 (256)
T 3g1l_A 201 RTLFASFA 208 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999984
No 19
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=99.86 E-value=3.7e-19 Score=166.35 Aligned_cols=188 Identities=19% Similarity=0.212 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
++||++|+++|.++|.++||+++||++||++||||++|||+||+||++|+.+++....+.+.+.+..... ...++.+.+
T Consensus 6 ~~rr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~l 84 (197)
T 2gen_A 6 SSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFA-RARSAEETV 84 (197)
T ss_dssp --CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHH-HCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHH
T ss_conf 8899999999999999759251769999999790998997783986999999999999999988898761-333506999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999987080899999999861-6404899999999999999999999998648899999988999999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYD-DVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
..++..++.+...+|....+++..... ..+................+..++..++..|.+++ .+++.++..+.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 163 (197)
T 2gen_A 85 RLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFRE-MPDDCFASVVIGPAHD 163 (197)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCBCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf 999999999999896999999996232468679999999999999999999999998699999-9999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996338990778999999988999999999999999970016
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+...|.......+.+. ..+.+.+++.+|||.
T Consensus 164 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~a 194 (197)
T 2gen_A 164 LARQWLAGRTRVALAD---------------CRELLAQVAWDSVRA 194 (197)
T ss_dssp HHHHHHTTCCSSCGGG---------------GHHHHHHHHHHHHBC
T ss_pred HHHHHHHCCCCCCHHH---------------HHHHHHHHHHHHHCC
T ss_conf 9999983799999999---------------999999999998679
No 20
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=99.86 E-value=6.5e-19 Score=164.45 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
+.++|++|++||.++|.++||+++|+++||++||||+|+||+||+||++|+.+++....+.+...+... ...++.+.
T Consensus 12 ~~~~r~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~yF~sKe~L~~~~~~~~~~~~~~~l~~~---~~~~~~~~ 88 (199)
T 3crj_A 12 FSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLERFVDSIHDV---ETTDPEAR 88 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHTC---CCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHH
T ss_conf 788999999999999997292407899999997919999988858999999999999999989999987---52899999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616--4048999999999999999999999986488999999889999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDD--VPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVF 167 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 167 (216)
+..++..++.....++....++....... .+...+............+..++..++..|.++ +.|++..+..+.+++
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~~a~~l~~~~ 167 (199)
T 3crj_A 89 LNLLLDELLVKPQENPDLSVALLEMRSQAPYKEAFSDRFRQNDEYVRYMLKAVINHGIDEGVFT-DVDAEHVTRSLLTII 167 (199)
T ss_dssp HHHHHHHHHTGGGGCHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHH
T ss_conf 9999999999998692999999999862768889999999999999999999999999869999-999999999999999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999996338
Q T0575 168 TELGNHLIERFA 179 (216)
Q Consensus 168 ~~~~~~~~~~~~ 179 (216)
.|....+.....
T Consensus 168 ~g~~~~~~~~~~ 179 (199)
T 3crj_A 168 DGARTRAVMLDD 179 (199)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999987599
No 21
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=99.86 E-value=3.3e-18 Score=158.99 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHH
Q ss_conf 788899999999999987491035479999984778545540268888999999999999999999875215-5664689
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPA-STTDMFA 88 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 88 (216)
.++||++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.++++...+.+...+...... ...++.+
T Consensus 22 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
T 1t56_A 22 GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDREN 101 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 88999999999999999709440779999999685866660358987899999999999999999999873567642899
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+..++..++.....++.....+.... ...+...+............+.+++..+...|.++++.++..++..+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 180 (216)
T 1t56_A 102 MWRTGINVFFETFGSHKAVTRAGQAAR-ATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNE 180 (216)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999986849999999871-3688999999999999999999999999983999998999999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q T0575 169 ELGNH 173 (216)
Q Consensus 169 ~~~~~ 173 (216)
++...
T Consensus 181 ~~~~~ 185 (216)
T 1t56_A 181 RTLFA 185 (216)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 22
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=99.85 E-value=1.7e-20 Score=176.80 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=137.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|||.. .+|+||++|+++|.++|.++||+++|+++||++||||+|+||+||+||++|+.++++...+.+...+.....
T Consensus 1 ~pk~~---~~e~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~sK~~L~~av~~~~~~~~~~~~~~~~~ 77 (209)
T 2gfn_A 1 VPKIV---DHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILD 77 (209)
T ss_dssp ---CC---CCCHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC---CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 92999---889999999999999999719130779999999693999999981999999999999999999999998863
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 55664689999999999999870808999999998--6164048999999999999999999999986488999999889
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKAL--YDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADT 158 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 158 (216)
....++.+.+..++..+......++....+..... ....+...+............+..++..+...|.++++.|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 157 (209)
T 2gfn_A 78 EEGAGPIEKLRNITASILPLDERRLAMTRVFLFFYAEGAAEETARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADA 157 (209)
T ss_dssp CTTCCHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHC----CCSHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 25898788999999999999874615768999999860489899999999999999999999999998599999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q T0575 159 AAFVLNVVFTELGNHL 174 (216)
Q Consensus 159 ~~~~~~~~~~~~~~~~ 174 (216)
.+..+.+++.|+...+
T Consensus 158 ~a~~l~~~~~G~~~~~ 173 (209)
T 2gfn_A 158 VTVALVALTDGLALQA 173 (209)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 23
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=99.85 E-value=6.7e-19 Score=164.34 Aligned_cols=166 Identities=15% Similarity=0.230 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++|++||.++|.++||+++||++||++||||+||||+||+||++|+.++++.....+...+..... ...++...
T Consensus 14 ~~~~r~rIl~AA~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~av~~~~~~~~~~~~~~~~~-~~~~~~~~ 92 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADF-PDIAAPDR 92 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCC-TTSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHH
T ss_conf 67999999999999999849250779999999689965222238989999999999887899999987410-01230999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+...+..+..+...++....+.........+................+..++..+...|.+.+ .+++..+..+.+++.+
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~ 171 (211)
T 3him_A 93 LMSTVTAYVTWHADNRASARVGQYELRSLSPEHFAIIADIRRSTTKVFTRIIEAGATAGDFHP-FDIEAAALAITSLGID 171 (211)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf 999999999998737699999998762268889999999999999999999998611589997-7999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999963
Q T0575 170 LGNHLIER 177 (216)
Q Consensus 170 ~~~~~~~~ 177 (216)
+..++...
T Consensus 172 ~~~~~~~~ 179 (211)
T 3him_A 172 VSRWFPSH 179 (211)
T ss_dssp HHHHCSCS
T ss_pred HHHHHHCC
T ss_conf 99998647
No 24
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=99.85 E-value=1e-18 Score=163.01 Aligned_cols=164 Identities=21% Similarity=0.139 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
+.+|++||+||.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+.........++.+.+
T Consensus 29 ~~tr~~Il~aA~~l~~~~G~~~~si~~IA~~aGvS~~tly~~F~sK~~Ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARL 108 (222)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 89999999999999998290307799999995948658979958899999999999999999999999746899999999
Q ss_pred HHHHHHHHHHHHHCHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999998708089----99999998616404899999999999999999999998648899999988999999999
Q T0575 91 RWLLDVGIQFQFHNPRL----AQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVV 166 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 166 (216)
..++..+......++.. ............+...+.+..........+..++..++..|.++++.+++.++..+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~a~~~~~~ 188 (222)
T 3bru_A 109 RLFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVLETWQRRTAQLFREAQACGELSADHDPDALAEAFWIG 188 (222)
T ss_dssp HHHHHHHHHHHHTTTTCCCCHHHHHHHTGGGSCTHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999998626067778999999875148999999999999999999999999999839999999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0575 167 FTELGNHL 174 (216)
Q Consensus 167 ~~~~~~~~ 174 (216)
+.|....+
T Consensus 189 ~~G~~~~~ 196 (222)
T 3bru_A 189 WEGAILRA 196 (222)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 25
>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP}
Probab=99.85 E-value=1.5e-18 Score=161.66 Aligned_cols=165 Identities=20% Similarity=0.190 Sum_probs=129.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 78878889999999999998749103547999998477854554026888899999999999999999987521556646
Q T0575 7 FNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDM 86 (216)
Q Consensus 7 ~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (216)
..-+++||++|+++|.++|.++||+++||++||++||||+|+||+||+||++|+.++++...+.+...+..... ...++
T Consensus 9 ~~k~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (212)
T 3knw_A 9 VKKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWT-TETSA 87 (212)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHS-SSSCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCH
T ss_conf 45549999999999999998709552889999999790999998885899999999999999999999999984-37998
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHH--HH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 899999999999998708089999--99---9986164048999999999999999999999986488999999889999
Q T0575 87 FAYLRWLLDVGIQFQFHNPRLAQI--AY---KALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAF 161 (216)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 161 (216)
.+.+..++..++.....++..... +. .......+.....+..........+.+++..+++.|.++++.+++.++.
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~ 167 (212)
T 3knw_A 88 RDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMRLIMNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQ 167 (212)
T ss_dssp HHHHHHHHHHHHHC--------CHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99999999999998852423777899999998752489999999999999999999999999998499999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q T0575 162 VLNVVFTELGN 172 (216)
Q Consensus 162 ~~~~~~~~~~~ 172 (216)
.+.+++.|...
T Consensus 168 ~i~~~~~G~~~ 178 (212)
T 3knw_A 168 VIYQMYLGAAL 178 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 26
>2hyt_A TETR-family transcriptional regulator; YP_049917.1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=99.84 E-value=4e-19 Score=166.07 Aligned_cols=193 Identities=17% Similarity=0.251 Sum_probs=138.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+++..+ ++++|++|++||.++|.++||+++||++||++||||+||||+||+||++|+.+++++....+.+.+.....
T Consensus 2 M~rr~~~~-~~~tR~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T 2hyt_A 2 MVRRTRAE-MEETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAISD 80 (197)
T ss_dssp ---CCHHH-HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999678-99999999999999999869151779999998383923064509899999999999999998999998870
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 556646899999999999998708089999999-9861640489999999999999999999999864889999998899
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYK-ALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTA 159 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ 159 (216)
. ..++.+.+..++..++.+... +.....+.. ..........+ ........+..++..+++.|.+. +.|++..
T Consensus 81 ~-~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~~ 153 (197)
T 2hyt_A 81 T-AEDDWEGFRCRCRAYLEMALE-PEIQRIVLRDARAVLGGASPD----SQRHCVESMQRLIDNLIRQGVVA-EADPQAL 153 (197)
T ss_dssp H-CSSHHHHHHHHHHHHHHGGGS-HHHHHHTTTHHHHHHCSSCHH----HHHHHHHHHHHHHHHHHHTTSBC-SCCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCC-CCCHHHH
T ss_conf 3-899899999999999999848-569999998706531053389----99999999999999999859999-9999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999963389907789999999889999999999999999700169
Q T0575 160 AFVLNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
+..+.+.+.++..++... ..+... ... ....++++.+||..+
T Consensus 154 a~~~~~~~~~~~~~~~~~--~~~~~~------------~~~-~~~~~~~ll~Gl~~~ 195 (197)
T 2hyt_A 154 ASLIYGSLAEAAFWIAEG--EDGNAR------------LAQ-GVAALELLLRGLLVK 195 (197)
T ss_dssp HHHHHHHHHHHHHHHHHC--SCHHHH------------HHH-HHHHHHHHHHTTBSS
T ss_pred HHHHHHHHHHHHHHHHHC--CCCHHH------------HHH-HHHHHHHHHHHCCCC
T ss_conf 999999999999998717--896557------------999-999999998037589
No 27
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=99.84 E-value=4.3e-19 Score=165.84 Aligned_cols=195 Identities=13% Similarity=0.123 Sum_probs=138.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+.+. ..++++|++|++||.++|.++||+++||++||++||||++|||+||+||++|+.+++....+.+...+.....
T Consensus 4 M~r~r~-~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~yF~~Ke~L~~~~~~~~~~~~~~~~~~~~~ 82 (203)
T 3ccy_A 4 MARTRS-ADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLY 82 (203)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999998-8889999999999999999749452889999998790987886767999999999999999999999998751
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
. ..++.+.+..++..++.....++....++.......++.....+..........+...+.+....+... ..++...+
T Consensus 83 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 160 (203)
T 3ccy_A 83 G-SNEPKTRFLQIVKLFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAAN-RTLAHVDT 160 (203)
T ss_dssp T-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTC-HHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHH
T ss_conf 3-898999999999999999885809999999998857988899999999999999999999985357877-55589999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999633899077899999998899999999999999997001
Q T0575 161 FVLNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMR 214 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~ 214 (216)
..+.+++.++.. ....... . ..+.+.+.+++++.+|+.
T Consensus 161 ~~~~~~~~~~~~----w~~~~~~-~-----------~~e~~~~~~~~l~l~G~~ 198 (203)
T 3ccy_A 161 MLFFGMINWTYT----WYKADGS-V-----------SPDALAERTVQLFLDGYL 198 (203)
T ss_dssp HHHHHHHHGGGG----TCCTTSS-S-----------CHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHH----HHCCCCC-C-----------CHHHHHHHHHHHHHHHHH
T ss_conf 999999999999----8347899-9-----------999999999999999999
No 28
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=99.84 E-value=4e-18 Score=158.37 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=132.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 78878889999999999998749103547999998477854554026888899999999999999999987521556646
Q T0575 7 FNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDM 86 (216)
Q Consensus 7 ~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (216)
++.|++||++|+++|.++|.++||+++||++||+++|||+|+||+||+||++|+.+++......+...+...... ..++
T Consensus 3 ~~~~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (194)
T 2g7s_A 3 MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKN-ISDP 81 (194)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCH
T ss_conf 998389999999999999997492518799999987909998847608999999999999999999999998615-9998
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 899999999999998708089999---99998616404899999999999999999999998648899999988999999
Q T0575 87 FAYLRWLLDVGIQFQFHNPRLAQI---AYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVL 163 (216)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~ 163 (216)
.+.+..++..+.......+....+ .........+..............+.+..++..++..|.+.++.+++..+..+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~ 161 (194)
T 2g7s_A 82 LEQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIF 161 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSCHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99999999999999762411425999999875028889999999999999999999999999849999999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0575 164 NVVFTELGN 172 (216)
Q Consensus 164 ~~~~~~~~~ 172 (216)
.+++.|+..
T Consensus 162 ~~~~~G~~~ 170 (194)
T 2g7s_A 162 MATVHGAML 170 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 29
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=99.84 E-value=4.1e-19 Score=166.00 Aligned_cols=168 Identities=14% Similarity=0.085 Sum_probs=129.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+.+. ++++|++|+++|.++|.++||+++||++||++||||+|+||+||+||++|+.++++...+.+.+.+.....
T Consensus 3 M~~~~k---~~~~R~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~ 79 (204)
T 3eup_A 3 MKELSK---SDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQ 79 (204)
T ss_dssp HHHHHC---SHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCH---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 752034---59999999999999999739462889999999790999997764564799999999999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55664689999999999999870808----99999999861640489999999999999999999999864889999998
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPR----LAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDA 156 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 156 (216)
. ..++.+.+..+...+.......+. .............+...+........+...+..++..++..|+++++.|+
T Consensus 80 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~d~ 158 (204)
T 3eup_A 80 A-CNTYKEMLLVYSSMYNDADGSLFPVGGCPLLNTTIEADDTHDALRKKAGEAILSWKKNLVTIIKKGIQAKEFRPDTDV 158 (204)
T ss_dssp T-CSSHHHHHTCHHHHHHGGGGTTSCTTSCHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCTTCCH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 3-588899999999999998732010014499999987513899999999999999999999999999985999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999
Q T0575 157 DTAAFVLNVVFTELGN 172 (216)
Q Consensus 157 ~~~~~~~~~~~~~~~~ 172 (216)
+.++..+.+++.|+..
T Consensus 159 ~~~a~~~~~~~~G~~~ 174 (204)
T 3eup_A 159 TKIAFSMIALVEGAIL 174 (204)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 30
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa}
Probab=99.83 E-value=3.2e-18 Score=159.08 Aligned_cols=194 Identities=16% Similarity=0.164 Sum_probs=141.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 88788899999999999987491035479999984778545540268888999999999999999999875215566468
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMF 87 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (216)
..|+++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.++++...+.+...+.........++.
T Consensus 10 ~~~e~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (215)
T 3e7q_A 10 LEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGAR 89 (215)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 89999999999999999997393407799999997948888988859999999999999999999999887632788678
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999999870808999999998--61640489999999999999999999999864889999998899999999
Q T0575 88 AYLRWLLDVGIQFQFHNPRLAQIAYKAL--YDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNV 165 (216)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~ 165 (216)
..+...+.........++.......... ....+................+..++..+...|.+. +.+++.++..+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l~~ 168 (215)
T 3e7q_A 90 PRLSAFFEASFSAELLDPQLLDAWLAFWGAVGSIEAIGRVHDHSYGEYRALLVGVLRQLAEEGGWA-DFDAELAAISLSA 168 (215)
T ss_dssp HHHHHHHHHHTSHHHHCGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHH
T ss_conf 889999999999887441577899999997047888999999999999999999999998768999-9889999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999633899077899999998899999999999999997001
Q T0575 166 VFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMR 214 (216)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~ 214 (216)
++.|+...+.......+.+ ...+.++.+++.|..|-.
T Consensus 169 ~i~g~~~~~~~~~~~~~~~------------~~~~~~~~~l~~l~~~~~ 205 (215)
T 3e7q_A 169 LLDGLWLESGLNPATFTPR------------QGVQICEAWVDGLEAGAH 205 (215)
T ss_dssp HHHHHHHHHHHCTTSSCHH------------HHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHCCCCCCHH------------HHHHHHHHHHHHHHHCCC
T ss_conf 9999999997578999999------------999999999999730867
No 31
>3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4}
Probab=99.83 E-value=2.5e-19 Score=167.68 Aligned_cols=204 Identities=21% Similarity=0.205 Sum_probs=145.7
Q ss_pred CCCCC-CCCC---CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98886-6788---7888999999999999874910354799999847785455402688889999999999999999998
Q T0575 1 MPTET-FFNL---PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLR 76 (216)
Q Consensus 1 Mp~~~-~~~~---~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~ 76 (216)
||..+ ..+. ++++|++|++||.++|.++||+++||++||++||||+||||+||+||++|+.+++....+.+...+.
T Consensus 2 m~~~~~~~gR~~~~~~tr~~Il~aA~~lf~e~G~~~~si~~IA~~agvs~~tlY~yF~sK~~L~~~~~~~~~~~~~~~~~ 81 (218)
T 3gzi_A 2 MAEAKSRVGRPSGDTQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMPVLAQLH 81 (218)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999983689999999999999983923057999999868896404415999999999889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 752155664689999999999999870808999999998616--404899999999999999999999998648899999
Q T0575 77 QTPPASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDD--VPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDL 154 (216)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~ 154 (216)
..... ++.+.+..++..++.....+|....++....... .+................+..++..+++.|.+.++.
T Consensus 82 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (218)
T 3gzi_A 82 KARRE---TRQESPAALLQTYYSVMSKHPHFPRLMLRIAGLDQSLPENAEVTKAFYEVVNFENIAIFQRLKDKNLLKDDV 158 (218)
T ss_dssp HHHHT---SCTTCHHHHHHHHHHHHHHSTTHHHHHHHHHTSCTTSGGGHHHHHHHHHHGGGCCTTHHHHHHHTTCBCTTC
T ss_pred HHHHC---CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98736---835259999999999999791698999999860768889999999999999999999999999849988898
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9889999999999999999996338990778999999988999999999999999970016
Q T0575 155 DADTAAFVLNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
++......+.+++.... +. +...............+++.+++.++++.+||-.
T Consensus 159 ~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~Gl~~ 211 (218)
T 3gzi_A 159 DAHCAQLSFFAMMVFPF---IV-----PENLLERVGIELTPDFLQLLAEQNTRLLQRGLMD 211 (218)
T ss_dssp CHHHHHHHHHHHHHHHH---HS-----CHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHBC
T ss_pred CHHHHHHHHHHHHHHHH---HH-----HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999---98-----9999987079999999999999999999966489
No 32
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=99.83 E-value=1.1e-18 Score=162.68 Aligned_cols=187 Identities=15% Similarity=0.159 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
+.+||++|+++|.++|.++||+++||++||++||||+|+||+||+||++|+.+++....+.+.+.+.... ....++.+.
T Consensus 9 ~~~rr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 87 (196)
T 3he0_A 9 AVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGV-NDDMPLKER 87 (196)
T ss_dssp --CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTC-CTTSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHH
T ss_conf 1999999999999999973913067999999809997865111899999999999998999999999861-358999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..+..+...++........ .....+................+..++.++++.|.+++ .|++.+...+.+.+.+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 165 (196)
T 3he0_A 88 YRTMWLNIWNLAGSNLNAISNRVQ-YDSLPCTTRNKTWELERKMFAQVDRLFNQGKEEGVFKP-LDNEVLSGLSFEASVA 165 (196)
T ss_dssp HHHHHHHHHHTTTSHHHHHHTTC-----CCHHHHHHHHHHHHHTTHHHHHHHHHHHHTTCBCS-CCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf 999999999997504689999999-86088888999999999999999999999998699999-9999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996338990778999999988999999999999999970016
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+...+........+ ..+++.++.+.+||++
T Consensus 166 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~i~k 195 (196)
T 3he0_A 166 LARKHALGFYQLDD----------------DALEAAIEASWDAIIK 195 (196)
T ss_dssp HHHHHHTTSCCCCH----------------HHHHHHHHHHHHHHBC
T ss_pred HHHHHHHCCCCCCH----------------HHHHHHHHHHHHHHHC
T ss_conf 99999818999999----------------9999999999999877
No 33
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=99.83 E-value=5.4e-19 Score=165.07 Aligned_cols=197 Identities=11% Similarity=0.164 Sum_probs=134.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|+++... .+++|++|+++|.++|.++||+++||++||++||||++|||+||+||++|+.++++...+.+.+.+.....
T Consensus 2 ma~r~~~--~~~~R~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~yF~~Ke~L~~a~~~~~~~~~~~~~~~~~~ 79 (212)
T 2ras_A 2 MASSGTE--HDAMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVLA 79 (212)
T ss_dssp ----CHH--HHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999988--18899999999999999739130779999998685914034618987899999999999999999999982
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
. ..++.+.+..++...+.....++.....++.......+...+............+..++.+++..|.++ +.+++..+
T Consensus 80 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~~~ 157 (212)
T 2ras_A 80 S-DLPPRRKMYEFFARRFVVMRRKWEADPVKLQTYIEVGNDYFEQVRSYIDLADHYLGEIIGEAMSDGAFS-GLEVDETI 157 (212)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCST-TCCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHH
T ss_conf 3-899999999999999999987312109999999873742499999999999999999999999869999-99999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999996338990778999999988999999999999999970016
Q T0575 161 FVLNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
..+..++.++....... .......+..+..+++.+..||..
T Consensus 158 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ll~gl~~ 198 (212)
T 2ras_A 158 SLVNQMCAPYCALNTMT--------------TFMERLSEDKLARIVDAVFDGLSA 198 (212)
T ss_dssp HHHHHHSGGGTSHHHHH--------------HHGGGCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHH--------------CCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999850--------------358777899999999999987357
No 34
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP}
Probab=99.83 E-value=2.6e-18 Score=159.78 Aligned_cols=178 Identities=16% Similarity=0.094 Sum_probs=132.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||++. ..++||++|++||.++|.++||+++||++||++||||+||||+||+||++|+.+++....+.+...+.....
T Consensus 2 ~Pk~~---d~e~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 78 (194)
T 2nx4_A 2 VPKLV---DHDERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALG 78 (194)
T ss_dssp CCHHH---HHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC---CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 48999---999999999999999998749040769999998790998882678999999999999878999999998753
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 5566468999999999999987080899999--99986164048999999999999999999999986488999999889
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIA--YKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADT 158 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 158 (216)
. .++.+....++..++.....++...... ........+...+............+..++..+...|.++ +.+++.
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~ 155 (194)
T 2nx4_A 79 D--ATGLDALRILCREVMPINEEQLLEARIAASLWPRAMYDEQMAATNRRTMDNWREQMAIFLEQAREEGSVG-DIDVTI 155 (194)
T ss_dssp T--CCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC-SCCHHH
T ss_pred C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHH
T ss_conf 7--9859999999999999999865666899999997527889999999999999999999999999869999-999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999999999999999633899077
Q T0575 159 AAFVLNVVFTELGNHLIERFAVNPAE 184 (216)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (216)
.+..+.+++.|+...+.......+.+
T Consensus 156 ~a~~i~~~~~g~~~~~~~~~~~~~~e 181 (194)
T 2nx4_A 156 VVEQLLNMMMGMQILGVLTPGETSSE 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999999998778999999
No 35
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=99.83 E-value=5.1e-19 Score=165.25 Aligned_cols=164 Identities=18% Similarity=0.216 Sum_probs=127.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||++.. ++++|++|+++|.++|.++||+++||++||+++|||+|+||+||+||++|+.++++...+.....+....
T Consensus 1 M~R~~r---~~~tr~~Il~aa~~l~~~~G~~~~si~~IA~~agvS~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~- 76 (215)
T 1ui5_A 1 MARQLR---AEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLD- 76 (215)
T ss_dssp ----CC---TTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCC---HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 979852---8999999999999999984945288999999868894508651999999999889999999999999762-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
....++.+.+..++..+......+|.....+ ........ ...............+..++..+++.|.+++++|++.++
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~d~~~~a 154 (215)
T 1ui5_A 77 GRGYSSLEALMRLTFGMARLCVQGPVLRAGL-RLATAGVP-VRPPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVA 154 (215)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHTTCC-CCC-CCCHHHHHHHHHHHHHHHHHHTTSSCTTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 4689999999999999999984056999999-98660710-269999999999999999999999839999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q T0575 161 FVLNVVFTEL 170 (216)
Q Consensus 161 ~~~~~~~~~~ 170 (216)
..+.+.+.|+
T Consensus 155 ~~i~~~~~G~ 164 (215)
T 1ui5_A 155 HTLVCSVVGT 164 (215)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 36
>3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099}
Probab=99.83 E-value=5.5e-18 Score=157.25 Aligned_cols=195 Identities=15% Similarity=0.126 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521--5566468
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP--ASTTDMF 87 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 87 (216)
.++||++|++||.++|.++||+++|+++||++||||+|+||+||+||++|+.+++.+..+.+...+..... ....++.
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~si~~IA~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (211)
T 3bhq_A 10 SARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQVNDIIESVTTLLSEAIFME 89 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 19999999999999999849351889999998488933066638988999999999999999999998875147642599
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 999999999999987080899999999861---64048999999999999999999999986488999999889999999
Q T0575 88 AYLRWLLDVGIQFQFHNPRLAQIAYKALYD---DVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLN 164 (216)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~ 164 (216)
..+..............+. .......... .+.................+.+++..+...|.++++ ++...+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~~~a~~l~ 167 (211)
T 3bhq_A 90 GGLQQLARRLIAVLMDEEL-LKLRRLIIANADRMPQLGRAWYEKGFERMLASTASCFQKLTNRGLIQTG-DPYLAASHLF 167 (211)
T ss_dssp HHHHHHHHHHHHHHTCHHH-HHHHHHHHHTTTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTSBCCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHH
T ss_conf 9999999999998606177-8999999997610839999999999999999999999999986999999-9999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCC
Q ss_conf 9999999999963389907789999999889999999999999999--700169
Q T0575 165 VVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILE--RGMRRR 216 (216)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~Gl~~r 216 (216)
+++.+....+.......+.. ...+...++..+++++ +|+++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~fL~~~g~~P~ 211 (211)
T 3bhq_A 168 GMLLWIPMNEAMFTGSNRRS----------KAELERHADASVEAFLAVYGVQPK 211 (211)
T ss_dssp HHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHHHHHHHHBC---
T ss_pred HHHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999856888999----------999999999999999998089999
No 37
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=99.82 E-value=7e-19 Score=164.20 Aligned_cols=198 Identities=17% Similarity=0.197 Sum_probs=137.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 66788788899999999999987491035479999984778545540268888999999999999999999875215566
Q T0575 5 TFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTT 84 (216)
Q Consensus 5 ~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (216)
+-++.+++||++|+++|.++|.++||+++||++||++||||+|+||+||+||++|+.++++...+.+........ ....
T Consensus 2 ~~~r~~e~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~tiy~yF~sK~~L~~~v~~~~~~~~~~~~~~~~-~~~~ 80 (203)
T 3cdl_A 2 NAMRLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNHFPSKEELFAEMLQRLWNCAPPQSEVVY-RPLV 80 (203)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHHHHHHHTC----CCSC-CTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
T ss_conf 746255899999999999999975915178999999979198899878699999999999999999999999887-4036
Q ss_pred CHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 468999999999999987080--899999999861640489999999999999999999999864889999998899999
Q T0575 85 DMFAYLRWLLDVGIQFQFHNP--RLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFV 162 (216)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 162 (216)
++.+.+..++..++....... .+..++... ....+...+.+..........+..+++.+++.|.++++ |+...+..
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-d~~~~a~~ 158 (203)
T 3cdl_A 81 SLREQLLELLWGKMRNLTDSSFLDLARVVVGA-TIHSPERAQVWLARINEREETFSAWIRAAQKDGRLKPV-DPGFAATQ 158 (203)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHSCHHHHTTCC------CHHHHHHHHHHHHTTCBCSC-CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHH
T ss_conf 67889999999998850141689999999987-60398999999999999999999999999986999999-99999999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999996338990778999999988999999999999999970016
Q T0575 163 LNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+.+++.+...+........+. ....+.+.++.+++++..|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~v~~fL~~~~~ 201 (203)
T 3cdl_A 159 MHALLKSFAFWPQVTFNAALL----------TPQEQSNVVESALNMFLGWYEI 201 (203)
T ss_dssp HHHHHHHHHTHHHHHHCCCCC----------CHHHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999996688899----------9999999999999999998589
No 38
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=99.82 E-value=1e-18 Score=162.98 Aligned_cols=175 Identities=18% Similarity=0.213 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++|+++|.++|.++|| ++|+++||+++|||+||||+||+||++|+.++++...+.+...+..... ..++.+.
T Consensus 11 ~~~tR~~Il~aA~~l~~~~G~-~~tv~~IA~~agvs~~t~Y~~F~sK~~L~~av~~~~~~~~~~~~~~~~~--~~~~~~~ 87 (196)
T 2qwt_A 11 AARNRARVLEVAYDTFAAEGL-GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRIVDHARTLLA--AEGPGEA 87 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_conf 899999999999999998597-7889999999695997998785999999999999999999999888602--7999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.+...++.....+.. ..+................+..++..+++.|.+++++++..+...+.....+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~r~d~~~~~l~~~~~~~~~~ 163 (196)
T 2qwt_A 88 LFVFMRDMVRSAAADYGLVDALVG----YGLDLEVAAPGAEAAFLATLGELLAAAQRAGTVRADVDVAVIKALLVVCKVP 163 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----TTCCHHHHSTTHHHHHHHHHHHHHHHHHHTTSBCSSCCHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 999999999999768599999987----4743146679999999999999999999859999999999999999999721
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999963389907789999999889999999999999999700169
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
. ..-....+.+++++..|||.|
T Consensus 164 -------------~------------~~~~~~~~r~~~~ll~GLr~~ 185 (196)
T 2qwt_A 164 -------------Q------------VYDGEVSERVVRVIEDGLRVR 185 (196)
T ss_dssp --------------------------------HHHHHHHHHHTTBC-
T ss_pred -------------C------------CCCHHHHHHHHHHHHHCCCCC
T ss_conf -------------5------------798999999999998100659
No 39
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=99.82 E-value=1.8e-17 Score=153.37 Aligned_cols=182 Identities=17% Similarity=0.157 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++|++||.++|.++||+++|+++||++||||+|+||+||+||++|+.+++.+..+.+.. . ....++.+.
T Consensus 21 ~~~~r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~----~--~~~~~~~~~ 94 (214)
T 2zb9_A 21 AEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWPSKGALALDGYFHAVEDTLA----F--PDTGDVRAD 94 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHC----C--CCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH----H--HHCCCCHHH
T ss_conf 7999999999999999983944088999999968785347422799999999999998888875----3--302462457
Q ss_pred HHHHHHHHHHHHHHCHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999987080899999--99986164048999999999999999999999986488999999889999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIA--YKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVF 167 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 167 (216)
+...+..++.+...++....+. .......+.................+..++..+++.|.++++.++..+...+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 174 (214)
T 2zb9_A 95 LLAQLRAFTHVMTRTPGGRILTELIGAAQTDADLATAYRQLYSAQRRALAAERLRHARELGQIRPDVDVQVLVDQLWGAV 174 (214)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999874700359999999871186899999999999999999999999998599999998999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999963389907789999999889999999999999999700169
Q T0575 168 TELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
. ..+........+ ..+..+++.+..|+++|
T Consensus 175 ~---~~~~~~~~~~~~----------------~~~~~~v~~~l~gl~~r 204 (214)
T 2zb9_A 175 Y---HRLLIPDEPVDD----------------AFVTALVTNLLDGVCPR 204 (214)
T ss_dssp H---HHHHSCSSCCCH----------------HHHHHHHHHHHHCSSCC
T ss_pred H---HHHHCCCCCCCH----------------HHHHHHHHHHHHHCCCC
T ss_conf 9---999817999999----------------99999999999607899
No 40
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=99.82 E-value=7.8e-19 Score=163.85 Aligned_cols=171 Identities=18% Similarity=0.263 Sum_probs=128.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+.+.- .++||++|++||.++|.++||+++||++||++||||+||||+||+||++|+.++++...+.+...+.....
T Consensus 2 M~r~~~~--~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T 3b81_A 2 MSRTNIN--FNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVAFFSNEVLKESE 79 (203)
T ss_dssp -----CC--HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999998--79999999999999999739150769999998791888999988999999999999999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
...++.+.+..++..++.....++....+.... ...................+..++.++++.|.+.++ ++...+
T Consensus 80 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~a 154 (203)
T 3b81_A 80 -EGLNSIERLKKILLAGIKITSVNEQVKEINSPS---NKIFHQKLMVAIIKYFAPIYADIISQGNEEGVFKVK-YPLETA 154 (203)
T ss_dssp -TTCCHHHHHHHHHTCCC-----------CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCS-CHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHH
T ss_conf -369999999999999999986276789998660---520039999999999999999999999985999999-999999
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999633
Q T0575 161 FVLNVVFTELGNHLIERF 178 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ 178 (216)
..+.+++.++...+....
T Consensus 155 ~~~~~~~~~~~~~~~~~~ 172 (203)
T 3b81_A 155 EIILTLSHFYLDEDLFKW 172 (203)
T ss_dssp HHHHHHHHTTTCHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998734
No 41
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=99.82 E-value=2.2e-18 Score=160.37 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
.|||++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.+++....+.+...+..... ...++.+.+
T Consensus 2 ~err~~Il~aA~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 80 (208)
T 2g3b_A 2 SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALNYINDRARAYRSEGEG-SGDSARDRL 80 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHSTTCC--CCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHH
T ss_conf 4899999999999999749030679999999691999998774899999999999999889999998752-699889999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999998708089999999--9861640489999999999999999999999864889999998899999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYK--ALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
...+..++.....++.....+.. ......+.....+..........+..++.+++..|.++++.|++..+..+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~a~~l~~~~~ 160 (208)
T 2g3b_A 81 TRSLLGEIQDRPEVVENSLAWNELRASAVYEEALRDPLARTTAAWVSEIADAIVQAQATGEISRSLDPQPTAVTMTALVE 160 (208)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999972401477799999997534788999999999999999999999999985999999999999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999963
Q T0575 169 ELGNHLIER 177 (216)
Q Consensus 169 ~~~~~~~~~ 177 (216)
|+...|...
T Consensus 161 gl~~~~l~~ 169 (208)
T 2g3b_A 161 GLSGRWLCK 169 (208)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
T ss_conf 999999628
No 42
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=99.82 E-value=3.2e-18 Score=159.10 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 88788899999999999987491035479999984778545540268888999999999999999999875215566468
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMF 87 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (216)
..++++|++|++||.++|.++||+++|+++||++||||+||||+||+||++|+.+++....+.... . ....++.
T Consensus 8 pr~~~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~----~--~~~~~~~ 81 (192)
T 2fq4_A 8 PRNIETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGFLSAAAARLP----V--PDTGSAL 81 (192)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHSCCCCC----C--CCCSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH----H--HHCCCCH
T ss_conf 997899999999999999985934077999999989099899634699999999999997899988----7--5036817
Q ss_pred HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999999870-808999999998616404899999999999999999999998648899999988999999999
Q T0575 88 AYLRWLLDVGIQFQFH-NPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVV 166 (216)
Q Consensus 88 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 166 (216)
+.+...+..++..... +..............+.................+..++..+.+.|.++++.++..++..+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~l~~~ 161 (192)
T 2fq4_A 82 NDILIHATSLANFLISREGTIINELVGEGQFDSKLAEEYRVRYFQPRRLQAKQLLEKGIKRGELKENLDIELSIDLIYGP 161 (192)
T ss_dssp HHHHHHHHHHHHHHHSTTTTHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 89999999999998733158999999986128799999999999999999999999999869999998899999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999963389907789999999889999999999999999700169
Q T0575 167 FTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
+ ...++....... ...++.+++.+.+|||.|
T Consensus 162 ~---~~~~~~~~~~~~----------------~~~~~~~v~~~l~glr~R 192 (192)
T 2fq4_A 162 I---FYRLLVTGEKLD----------------DSYVHDLVINAFEGIRLR 192 (192)
T ss_dssp H---HHHHHTTCCCCC----------------HHHHHHHHHHHHHCSSCC
T ss_pred H---HHHHHHCCCCCC----------------HHHHHHHHHHHHHHCCCC
T ss_conf 9---999984799999----------------999999999999762999
No 43
>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1
Probab=99.82 E-value=4.7e-18 Score=157.82 Aligned_cols=206 Identities=15% Similarity=0.111 Sum_probs=124.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|-+-+...-++++|++|++||.++|.++||++ |+++||++||||+|+||+||+||++|+.+++++..+.+.+.+.....
T Consensus 1 m~~p~~~~r~~~tr~~Il~aA~~lf~~~G~~~-t~~~IA~~aGvs~~~iY~yF~sK~~L~~~v~~~~~~~~~~~~~~~~~ 79 (224)
T 1t33_A 1 MNIPTTTTKGEQAKSQLIAAALAQFGEYGLHA-TTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAE 79 (224)
T ss_dssp CCSCCCSHHHHHHHHHHHHHHHHHHHHHGGGS-CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96899877789999999999999999879075-69999998389924215788999999999999999999999999998
Q ss_pred ------CCCCCHHHHHHHHHHHHHHH---HHH---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf ------55664689999999999999---870---808999999998616404899999999999999999999998648
Q T0575 81 ------ASTTDMFAYLRWLLDVGIQF---QFH---NPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADG 148 (216)
Q Consensus 81 ------~~~~~~~~~l~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 148 (216)
....++...+..+....... ... .+....++..+.....+................+.+++.++...|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 159 (224)
T 1t33_A 80 KAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCD 159 (224)
T ss_dssp HHHHHHSSSSCCHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHHSCCHHHHHHHHHTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77654301122234899999999999999971710379999999876015489999999999999999999999984799
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH--HHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999889999999999999--999-9963389907789999999889999999999999999700169
Q T0575 149 SLVPDLDADTAAFVLNVVFTEL--GNH-LIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
.... +.......+.+.+..+ ... .......... .......+.+.+...++++.+||++|
T Consensus 160 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~id~ll~Gl~~r 221 (224)
T 1t33_A 160 ANDT--RMILHTHALLGEVLAFRLGKETILLRTGWPQF-------DEEKAELIYQTVTCHIDLILHGLTQR 221 (224)
T ss_dssp TTSH--HHHHHHHHHHHHHHHHHHTHHHHHHHHTCSSC-------CHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9961--49999999999999999989999987185236-------85679999999999999998633546
No 44
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=99.81 E-value=2.6e-18 Score=159.85 Aligned_cols=177 Identities=14% Similarity=0.185 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.+++|++|+++|.++|.++||+ +|+++||++||||++|||+||+||++|+.+++....+.+...+..... ..++.+.
T Consensus 13 ~~~tR~~Il~aa~~l~~~~G~~-~Ti~~Ia~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 89 (194)
T 2q24_A 13 AQRNRDKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVARLCDSVPGLLA--ELPPAEA 89 (194)
T ss_dssp ---CHHHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHHHHHTHHHHHH--HSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_conf 8999999999999999987956-769999999498886799885899999999999999998888777522--6999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.+...++.....+............. ........+..++..+...|.+++++++..+...+.++..
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~r~d~~~~~~~~~l~~~~~- 164 (194)
T 2q24_A 90 LRAWTRRFIDYATAKLGMADALRAVVASGGDPYGD----SRQLIQSALTALMDAAAAAGEIRSDIRSTDMFAALAGIAL- 164 (194)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCSCTT----HHHHHHHHHHHHHHHHHHTTSSCSCSCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-
T ss_conf 99999999999986938999999863033215899----9999999999999870144888999889999999999999-
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999963389907789999999889999999999999999700169
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
. .... ......+++++++.+||+..
T Consensus 165 ---~---~~~~----------------~~~~~~~~~~~~ll~glr~~ 189 (194)
T 2q24_A 165 ---T---SSRP----------------DQRAQAERLLDLVLDGLRPT 189 (194)
T ss_dssp ---H---HCSG----------------GGHHHHHHHHHHHHHHTCC-
T ss_pred ---H---HCCC----------------CCHHHHHHHHHHHHHHCCCC
T ss_conf ---7---6278----------------84789999999999671899
No 45
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=99.81 E-value=1.3e-18 Score=162.01 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHH
Q ss_conf 8889999999999998749103547999998477854554026888899999999999999999987-521556646899
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQ-TPPASTTDMFAY 89 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (216)
..||++|++||.++|.++||+++|+++||++||||+|+||+||+||++|+.+++....+.+...+.. .......++.+.
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTR 88 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 89999999999999997495528799999997909988858769999999999999999999999975403579999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.+...+|....++....... ................+.+.+..+++.|.++ +.|+......+.+++.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (196)
T 3col_A 89 IRLYVQQVYDYSLANPDSLTIIQQIKALN--GQGMTISAADADPNNIVANLLTAAIDAKVIK-QLPVSLHMGVVFSTIHT 165 (196)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHH--CC-------CCGGGTHHHHHHHHHHHTTSBC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHH
T ss_conf 99999999999986949999999865175--4349999999999999999999999859999-99999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996338990778999999988999999999999999970016
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+...+.......++. .++.+++++..||++
T Consensus 166 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~r 195 (196)
T 3col_A 166 HTTNISKGRYAQDQY----------------TFGDIFQMIWDAMKQ 195 (196)
T ss_dssp HHHHHHTTSSCTTSS----------------CHHHHHHHHHHHHBC
T ss_pred HHHHHHCCCCCCCHH----------------HHHHHHHHHHHHHCC
T ss_conf 999998389899899----------------999999999998774
No 46
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=99.81 E-value=1.6e-18 Score=161.33 Aligned_cols=175 Identities=14% Similarity=0.085 Sum_probs=129.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|+++... .++++|++|++||.++|.++||+++|+++||++||||++|||+||+||++|+.+++....+.+.+.+.....
T Consensus 2 Ma~r~~~-~~~~~R~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~ 80 (198)
T 3cjd_A 2 MAGKVEA-RKAALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQDLNALTLEVNGRTFARLGAAVGAVVA 80 (198)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCHHC-CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9984100-699999999999999999829331329999998588955002416987889999999999999999999875
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 55-66468999999999999987080899999999861640489999999999999999999999864889999998899
Q T0575 81 AS-TTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTA 159 (216)
Q Consensus 81 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ 159 (216)
.. ..+....+......+..+...+|....+.+.......+...+............+.+.+..+...+ ++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 157 (198)
T 3cjd_A 81 DGQDDHPNERLIAMSHAYLAFAREHPKLWRALFDVEMRSDGPVPQWYGHAMAQLFSYITTPLAKIFPES---DDAELDLM 157 (198)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHCTTC---CHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCHHHH
T ss_conf 078730369999999999999986879999999844146611499999999999999999999863258---96689999
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999996338
Q T0575 160 AFVLNVVFTELGNHLIERFA 179 (216)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (216)
+..+.+.+.++...+.....
T Consensus 158 ~~~~~~~~~g~~~~~~~~~~ 177 (198)
T 3cjd_A 158 TRTLFSSVHGIVLLGLENRI 177 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999973788
No 47
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=99.81 E-value=5.4e-18 Score=157.31 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
+++||++|++||.++|.++||+++||++||++||||++|||+||+||++|+.+++++..+.+...+.........++.+.
T Consensus 6 ~~~~R~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2o7t_A 6 ALKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFNVVISLQLQAISTFPTDPEGV 85 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 89999999999999999849140779999998686902277618999999999999999999999999875489989999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..+...+. .... .............................+..++..++..|.+++++++..+...+.++..
T Consensus 86 l~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~d~~~~~~~~~~~~~~~- 159 (199)
T 2o7t_A 86 WTSFNQLLF----DRGL-GSLVPALAPESLDDLPDEVSALRRTTEKNTTTLINLAKQHGLVHHDIAPGTYIVGLITISR- 159 (199)
T ss_dssp HHHHHHHHH----HTTH-HHHHHHHCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHTS-
T ss_pred HHHHHHHHH----HHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-
T ss_conf 999999998----7400-0599999886241136999999999999999999999985999999999999999999998-
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996338990778999999988999999999999999970016
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
.........+ ....++.+..+++.|..|+..
T Consensus 160 ---~~~~~~~~~~------------~~~~~~~~~~~l~gLr~g~~a 190 (199)
T 2o7t_A 160 ---PPITALATIS------------ENSHKALLGLYLSGLKHGMMA 190 (199)
T ss_dssp ---CCCGGGCCSS------------CHHHHHHHHHHHHHHHHCCC-
T ss_pred ---HHHHCCCCCC------------HHHHHHHHHHHHHHHHHHCCC
T ss_conf ---8862366686------------999999999999985613489
No 48
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=99.81 E-value=1.4e-17 Score=154.25 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=115.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|..++..-.+++||++|++||.++|.++||+++||++||++||||++|||+||+||++|+.+++....+.+...+.....
T Consensus 3 m~~~~rr~~r~~rr~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 82 (203)
T 3f1b_A 3 MAGGTKRLPRAVREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGD 82 (203)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99899999999999999999999999729341779999999890988997882999999999999999999999988634
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
...++.+.+..++..++++...+|....+++.......+. ..............+..++..+...+. +..+...++
T Consensus 83 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 158 (203)
T 3f1b_A 83 -PGLSPREQLRRALEGFLGFVGKHRKSWMVLYRQAMGQQAF-VGSVQSSRDRLIELTAHLLESSTKDPE--PGQDFELIA 158 (203)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC-CCTT-TTTHHHHHHHHHHHHHHHHHHSCC-------CHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHH
T ss_conf -5899899999999999999886869999999874268789-999999999999999999997442788--430299999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0575 161 FVLNVVFTE 169 (216)
Q Consensus 161 ~~~~~~~~~ 169 (216)
..+.+...+
T Consensus 159 ~~l~~~~~~ 167 (203)
T 3f1b_A 159 IALVGAGEA 167 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 49
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=99.81 E-value=2.8e-19 Score=167.33 Aligned_cols=193 Identities=14% Similarity=0.077 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
.++++|++|++||.++|.++||+++|+++||++||||++|||+||+||++|+.+++....+.+...+ .....++.+
T Consensus 14 ~~~~~R~~Il~aA~~l~~~~G~~~~ti~~Ia~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~----~~~~~~~~~ 89 (208)
T 3cwr_A 14 PDAVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVESWIAPIFPGF----EADPQDAAA 89 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTTTTSC----CSSCSSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHCCCCHH
T ss_conf 8299999999999999998591406799999985889665024799999999999999999999999----875168068
Q ss_pred HHHHHHHHHHHHHHH--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999870--808999999998616404899999999999999999999998648899999988999999999
Q T0575 89 YLRWLLDVGIQFQFH--NPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVV 166 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 166 (216)
.+..+.......... +......+.........................+..++..+++.|.++++.|+...+..+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (208)
T 3cwr_A 90 ALERIVYDIAQAVLSREAVSLFRMLASDADLRNRFLPAYNANGIERSRRELARWLDQQASAGRLPLPIPAERVADLLLSA 169 (208)
T ss_dssp HHHHHHHHHHHHHSBHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999997532236899999986208299999999999999999999999999869999999999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999996338990778999999988999999999999999970016
Q T0575 167 FTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+.+............+.. ...+...+...++++..|++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~Gl~k 208 (208)
T 3cwr_A 170 VIAEPLRQITLGLREPLP----------AWDIAPRVADAVRLIAPGRER 208 (208)
T ss_dssp HTHHHHHHHHHTSSCCBT----------SSCCHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999828889999----------999999999999998542789
No 50
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ...
Probab=99.80 E-value=3.6e-18 Score=158.66 Aligned_cols=186 Identities=12% Similarity=0.209 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 88999999999999874910354799999847785455402688889999999999999999998752155664689999
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLR 91 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (216)
.+|++|++||.++|.++||+++|+++||++||||+||||+||+||++|+.++++...+.+.+.+...... ..++.+.+.
T Consensus 2 ~~R~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (194)
T 3bqz_B 2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIK-AKTNREKFY 80 (194)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGG-CCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_conf 5999999999999997591517799999987909888814388999999999999999999999998625-999999999
Q ss_pred HHHHHHHHHHHHCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999870808999999-9986164048999999999999999999999986488999999889999999999999
Q T0575 92 WLLDVGIQFQFHNPRLAQIAY-KALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTEL 170 (216)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (216)
............++....... .......+...+............+..++..++..|.+++. ++...+..+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~~~a~~~~~~~~g~ 159 (194)
T 3bqz_B 81 LYNELSLTTQYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSIN-DVNAVSKIAANAVNGI 159 (194)
T ss_dssp HHHHHHHHCSSSGGGHHHHHHHHTTC--CC-CCC-CHHHHHHHHHHHHHHHHHHHHTTSCCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHH
T ss_conf 999999998752736678999999850588999999999999999999999999986999988-9999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999996338990778999999988999999999999999970016
Q T0575 171 GNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
..++. .... ......++..++++.+||+|
T Consensus 160 ~~~~~----~~~~------------~~~~~~~~~~~~~~l~Gl~K 188 (194)
T 3bqz_B 160 VTFTH----EQNI------------NERIKLMNKFSQIFLNGLSK 188 (194)
T ss_dssp HHHTT----TSCH------------HHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHH----CCCC------------CCHHHHHHHHHHHHHHHHCC
T ss_conf 99977----3891------------13999999999999998776
No 51
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=99.79 E-value=7e-17 Score=148.71 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++|+++|.++|.++||+++|+++||++||||++|||+||+||++|+.+++........ ......++.+.
T Consensus 38 ~~~tR~~Il~AA~~l~~e~G~~~~Ti~~IA~~agVs~~tlY~yF~sKe~Ll~av~~~~~~~~~------~~~~~~~~~~~ 111 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQSL------PRADTGALEED 111 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHCC------CCCCCSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH------HHHHCCCCHHH
T ss_conf 099999999999999998493407799999996919888701079999999999998889988------65421341447
Q ss_pred HHHHHHHHHHHHHHCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999987080899--99999986164048999999999999999999999986488999999889999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLA--QIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVF 167 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 167 (216)
+...+..+......++... ..+... ....+...+.+........+.+...+.++++.|+++++.|+..++..+.+.+
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~~d~~~~~~~l~~~~ 190 (225)
T 2id3_A 112 LRANARLVVRTLDDPRQGRLFRALIAA-SLCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVPDGTDPHGVVAAVSAPL 190 (225)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999999998674100799999997-4158899999999999999999999999998599999999999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999633899077899999998899999999999999997001
Q T0575 168 TELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMR 214 (216)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~ 214 (216)
. ..++....... .....+.++.++.++..|+-
T Consensus 191 ~---~~~l~~~~~l~------------~~~~d~~~~~v~~~~rag~~ 222 (225)
T 2id3_A 191 Y---YALLNTGRSLT------------EADADRAARAASTAARAGVW 222 (225)
T ss_dssp H---HHHHTTCCCCC------------HHHHHHHHHHHHHHHHTTTT
T ss_pred H---HHHHCCCCCCC------------HHHHHHHHHHHHHHHHHHCC
T ss_conf 9---99981799999------------99999999999999986416
No 52
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=99.79 E-value=3e-17 Score=151.55 Aligned_cols=164 Identities=18% Similarity=0.116 Sum_probs=114.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88667887888999999999999874910354799999847785455402688889999999999999999998752155
Q T0575 3 TETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPAS 82 (216)
Q Consensus 3 ~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~ 82 (216)
+++...-|+++|++|++||.++|.++||+++||++||+++|||+|+||+||+||++|+.++++...+.+...+......
T Consensus 26 ~~~~~~~~~~tR~~Il~AA~~l~~e~G~~~~T~~~IA~~aGvs~gt~Y~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~- 104 (221)
T 3g7r_A 26 TEAAARTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGS- 104 (221)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 9877688299999999999999998492407899999997919889987758799999999999999999999998715-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 66468999999999999987080899999999861640489999999999999999999999864889999998899999
Q T0575 83 TTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFV 162 (216)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 162 (216)
..++...+...+..+..+...++.....+.............. ..........+.+.+......+. ..++...+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~a~~ 180 (221)
T 3g7r_A 105 SPAADGQVRAVARSIVDGIRSPGFRGCAFLNAVAEYPDPAHPV-HRAVLAHRQWFLDTVTELLAQVG---DGDGVAAGRH 180 (221)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHCCCTTSHH-HHHHHHHHHHHHHHHHHHHHTTS---SSCSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHH
T ss_conf 8870799999999999997376301449999998706788899-99999999999999999998738---9999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0575 163 LNVVFTELG 171 (216)
Q Consensus 163 ~~~~~~~~~ 171 (216)
+..++.|..
T Consensus 181 l~~l~~G~~ 189 (221)
T 3g7r_A 181 LVMLRDGAM 189 (221)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 53
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=99.79 E-value=1.2e-17 Score=154.57 Aligned_cols=178 Identities=13% Similarity=0.134 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++.+|++|++||.++|.++||+++||++||++||||+||||+||+||++|+.++++...+.+.+.+..... ..++.+.
T Consensus 6 ~~~tre~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~l~~~~~--~~~~~~~ 83 (183)
T 1zk8_A 6 IGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHNRLEEAAE--DKRMDEA 83 (183)
T ss_dssp CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHH
T ss_conf 26389999999999999709440579999998588943033228987889999999999999999998740--0577999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.+...+|......+. ..+..... ... +.+.+......+.+ +..++...+..+.+.+.|
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 150 (183)
T 1zk8_A 84 IHALGEAYVAFVRKHPGLYEATFL----RDEEVRKA----GDG----IVKLCLQVLQQYGL-EGENALHATRGFRSICHG 150 (183)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTC----CCHHHHHH----HHH----HHHHHHHHHGGGTC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHH----CCHHHHHH----HHH----HHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHH
T ss_conf 999999899999989899999983----56302799----999----99999999985489-954699999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996338990778999999988999999999999999970016
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
+...........+. ..+..++..++.+.+|||+
T Consensus 151 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~Glre 183 (183)
T 1zk8_A 151 FASIEQQGGFGLPL-------------DLDISLHVLLETFIKGLRE 183 (183)
T ss_dssp HHHHHHHTCCCSSS-------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCCCCC-------------CHHHHHHHHHHHHHHHCCC
T ss_conf 99999717889988-------------9999999999999987489
No 54
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=99.79 E-value=3.7e-17 Score=150.90 Aligned_cols=168 Identities=10% Similarity=0.015 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++|+++|.++|.++|| ++||++||++||||+|+||+||+||++|+.++++...+.+...+..... ...++.+.
T Consensus 18 ~~~tr~~Il~aA~~lf~e~G~-~~s~~~IA~~Agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~ 95 (215)
T 2hku_A 18 GRQTRDALFTAATELFLEHGE-GVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAEDDAA-TAETVGDY 95 (215)
T ss_dssp --CHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHH
T ss_conf 899999999999999998587-7869999998650423688865999999999999999999999876127-78999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..+......++....... ......+...+.+..........+.+.+..+...+...++.+++..+..+.+.+.+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~g 174 (215)
T 2hku_A 96 TEKLVGSLLGPGAPSVELFTSAM-LMTGRRSELRDLITDTLRTLHSSGEVALIRTLMRTGWQLRAGIDVESKAFWSAIFG 174 (215)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999702540369999999-97536988999999999999999999999999864876789869999999999999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999963389
Q T0575 170 LGNHLIERFAV 180 (216)
Q Consensus 170 ~~~~~~~~~~~ 180 (216)
+...+......
T Consensus 175 ~~~~~~~~~~~ 185 (215)
T 2hku_A 175 LVIQKTATGES 185 (215)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHCCCC
T ss_conf 99999863664
No 55
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=99.79 E-value=1.8e-16 Score=145.50 Aligned_cols=168 Identities=18% Similarity=0.139 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
+++||++|++||.++|.++||+++||++||++||||++|||+||+||++|+.+++....+.+...+.. ....++.+.
T Consensus 11 ~e~rR~~Il~AA~~l~~~~G~~~~tv~~IA~~aGvs~~tlY~yF~sK~~L~~a~~~~~~~~~~~~~~~---~~~~~~~~~ 87 (231)
T 2qib_A 11 VEERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDLADRFVE---PRQGPLGAR 87 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTCC---CSCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHH
T ss_conf 99999999999999999729240779999999791999886327988999999999999999999986---542995667
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++++...++.....+......... .............+...+......+. +..+....+..+.+++.+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 162 (231)
T 2qib_A 88 LLRVMGRYFDFVDEHGPGFSALMRGGPAVGS---TTTNALVDSVRQAAYVQILSHLDVTE--PPARLELVVRSWISLAES 162 (231)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHHHHHTCSS--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999897999999952855476---99999999999999999998627889--806599999999999999
Q ss_pred HHHHHHHHCCCCHHHH
Q ss_conf 9999996338990778
Q T0575 170 LGNHLIERFAVNPAEL 185 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (216)
...+|+........+.
T Consensus 163 ~~~~~l~~~~~~~~e~ 178 (231)
T 2qib_A 163 TALLWLDGRRIPRAEL 178 (231)
T ss_dssp HHHHHHTTCCSCHHHH
T ss_pred HHHHHHHCCCCCHHHH
T ss_conf 9999970899999999
No 56
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=99.79 E-value=2.8e-17 Score=151.86 Aligned_cols=172 Identities=17% Similarity=0.123 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++||++|.+||.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+...... ..++.+.
T Consensus 39 ~~~tR~~Il~aA~~Lf~e~G~~~~T~~~IA~~AGvs~~t~Y~hF~sK~~Ll~av~~~~~~~~~~~~~~~~~~-~~~~~~~ 117 (273)
T 3c07_A 39 SEQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHRAAVREVLAR-ETDLEAR 117 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTTHHHH-CCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHH
T ss_conf 899999999999999998493317899999998919999999959878999999999999999999998735-9999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHH
Q ss_conf 9999999999987080899999999861640489999999999999999999999864889999-998899999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPD-LDADTAAFVLNVVFT 168 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 168 (216)
+..++..++.....++.....++............ ...........+..++......+....+ ........++...+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
T 3c07_A 118 LAGVLKVWLDIATPYHEFAVQFFKNAADPDSPLSP-FSPESEHARVEAIGIHRAVLAGAKTKVPEELRDILPELMWLSQM 196 (273)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHTCTTSTTST-TSGGGHHHHHHHHHHHHHHHHTSSSCCCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999998879999999985267522457-89999999999999999998616656880378999999999999
Q ss_pred HHHHHHHHHCCCCHH
Q ss_conf 999999963389907
Q T0575 169 ELGNHLIERFAVNPA 183 (216)
Q Consensus 169 ~~~~~~~~~~~~~~~ 183 (216)
++..+|+........
T Consensus 197 gl~~~wl~~~~~~~~ 211 (273)
T 3c07_A 197 GLVLYWIFDRTEGRE 211 (273)
T ss_dssp HHHHHHHHCCSTTSH
T ss_pred HHHHHHHCCCCCCCH
T ss_conf 999999548999842
No 57
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=99.78 E-value=1.7e-17 Score=153.54 Aligned_cols=159 Identities=17% Similarity=0.251 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++....+.+...+.........++.+.
T Consensus 22 ~~~tr~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (214)
T 2oer_A 22 SSELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTRPPLER 101 (214)
T ss_dssp -CHHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999999999999999729330779999999790998999884999999999999999999999999875258999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..+..+...+|....++...... +................+..++..+...+ ...++...+..+..++.+
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ 176 (214)
T 2oer_A 102 LRRLVLAFVRSECEEAAIRVALSDAAPL--YRDADEAREVKAEGARVFQAFLREALPEV---AEAERSLAGDLLTTTLGA 176 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTT--C----CHHHHHHHHHHHHHHHHHHHCSSS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHH
T ss_conf 9999999999987592999999985125--56619999999999999999999871025---756799999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q T0575 170 LGNH 173 (216)
Q Consensus 170 ~~~~ 173 (216)
+..+
T Consensus 177 ~~~~ 180 (214)
T 2oer_A 177 VGKQ 180 (214)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 58
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=99.78 E-value=7.8e-18 Score=156.10 Aligned_cols=179 Identities=16% Similarity=0.103 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.+++|++|+++|.++|.++||+ +|+++||+++|||+++||+||+||++|+.+++....+.+...+..... ..++.+.
T Consensus 14 a~~~Re~Il~aA~~l~~~~G~~-~Ti~~IA~~agvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~~~~~~--~~~~~~~ 90 (199)
T 2rek_A 14 ARRNYDRIIEAAAAEVARHGAD-ASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDEARSLAA--EHPPATA 90 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
T ss_conf 8999999999999999986978-879999999791999998675898899999999999988899998751--7999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.+...++.....+...... .................+..++..+...|.+++++++..+...+.++..
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~- 167 (199)
T 2rek_A 91 LTRWLTSLAVFGAVTRGAARSLLPATGT--NTGAALDSRCEQLLTEAGADLLARAQEDGTVRDDVTALELLSLANAVSL- 167 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC-----------CCCCHHHHHHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-
T ss_conf 9999999999986373799999986247--5207999999999999999999999985999999989999999999999-
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996338990778999999988999999999999999970016
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
....... -......+++++..||+.
T Consensus 168 -----~~~~~~~----------------~~~~~~r~~~~ll~gl~~ 192 (199)
T 2rek_A 168 -----AAEHTPD----------------AAHHATRLMGIALGGLGA 192 (199)
T ss_dssp -----HHTTSTT----------------HHHHHHHHHHHHHHCSCC
T ss_pred -----HHCCCCC----------------HHHHHHHHHHHHHHHCCC
T ss_conf -----8515898----------------299999999999966289
No 59
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=99.78 E-value=1.5e-17 Score=153.94 Aligned_cols=187 Identities=16% Similarity=0.198 Sum_probs=133.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 88788899999999999987491035479999984778545540268888999999999999999999875215566468
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMF 87 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (216)
..+.++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.++++...+.+...+.... ...++.
T Consensus 13 ~~~~~tr~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~--~~~~~~ 90 (207)
T 2rae_A 13 RRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPWGDFDAHLAEMRAQLAAQP--DDIPIV 90 (207)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCSHHHHHHHHHHHHHHSC--TTSCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHH
T ss_conf 884889999999999999972903067999999979199899888799999999999999999999998632--489999
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999998708089999999986164048999999999999999999999986488999999889999999999
Q T0575 88 AYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVF 167 (216)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 167 (216)
+.+..++..+..+...++.....+....... +................+.+.+... .|...++.++..++..+.+++
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~ 167 (207)
T 2rae_A 91 DGLTAALLQFNAFPASEEINHRKRMGLILRV-PALQAYSVVMYEGWRNVIAEYVASR--LGTSPTDHVPRTVGYLLLGVA 167 (207)
T ss_dssp HHHHHHHHHTTCCCGGGHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH--HTSCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999998861307999999987458-8789999999999999999999986--499988645999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999996338990778999999988999999999999999970016
Q T0575 168 TELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
.+....|....... ....+...++.|.+|+..
T Consensus 168 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~gl~~ 199 (207)
T 2rae_A 168 MSAYEQWLDDDSLE----------------LNELLASGMQSLYDGLSS 199 (207)
T ss_dssp HHHHHHHHHCTTSC----------------HHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHCCCCC----------------HHHHHHHHHHHHHHHCCC
T ss_conf 99999997479999----------------999999999999977767
No 60
>2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=99.78 E-value=4.9e-17 Score=149.92 Aligned_cols=192 Identities=16% Similarity=0.203 Sum_probs=129.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|+++. .++.+|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.++++...+.+.+.+....
T Consensus 1 mr~~~---~~~~t~e~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~~K~~Ll~~~~~~~~~~~~~~~~~~~- 76 (203)
T 2np5_A 1 MRERR---YSSTSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLARLSEVE- 76 (203)
T ss_dssp -----------CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHTSC-
T ss_pred CCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 99987---75079999999999999973914087999999869089888504798999999999999999999999875-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
...++.+.+...+..++.....++....+......... . .+............+...+....... ...+++..+
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a 150 (203)
T 2np5_A 77 -RGGDPARALFAAMSQLLPLDEARSREAHVMAAFAVRAA-T-SPSLAEIRRKTLFTIRTGLSAVLIGI---GTPEAETRA 150 (203)
T ss_dssp -CTTCHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHHHHHHTT---TCTTHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHH
T ss_conf -27987999999999999998858147699999998535-8-99999999999999999999998766---899999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999633899077899999998899999999999999997001
Q T0575 161 FVLNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMR 214 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~ 214 (216)
..+.+++.|+...+.......+. +.+.+.++..++.+..|+.
T Consensus 151 ~~l~~~~~gl~~~~~~~~~~~~~------------e~~~~~l~~~l~~~l~g~~ 192 (203)
T 2np5_A 151 ALLLATVDGLALDAIGSPALYPP------------EYLEHALDIQIGMILQGAD 192 (203)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSCH------------HHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCH------------HHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999768688999------------9999999999999964788
No 61
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=99.78 E-value=3.3e-17 Score=151.28 Aligned_cols=153 Identities=17% Similarity=0.260 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
.|+++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++....+.+... .... ..
T Consensus 5 ~~e~tR~~Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sKe~L~~a~~~~~~~~~~~~----~~~~----~~ 76 (202)
T 2d6y_A 5 DPEATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEKKMLDLAIS----VPVD----PD 76 (202)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHH----SCCC----GG
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----CCCC----CC
T ss_conf 889999999999999999749140779999998591988996787799999999999999999985----1541----01
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+...+...+.+...+|...+.+............. ...........+...+..++..|.+.++.++......+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 155 (202)
T 2d6y_A 77 DIEGWIDRLLDYHAAHPELLRLLFWEGMEYGTAELP-HEAERQEHYARKVAAVRDGQERGVITDAIPAPDLLFLLVAMAN 155 (202)
T ss_dssp GHHHHHHHHHHHHHHCTHHHHHHHHHHHHHTTSCCT-THHHHHHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 189999999999998989999999998607621047-9999999999999999999985999999999999999999999
Q ss_pred HH
Q ss_conf 99
Q T0575 169 EL 170 (216)
Q Consensus 169 ~~ 170 (216)
+.
T Consensus 156 ~~ 157 (202)
T 2d6y_A 156 WA 157 (202)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 62
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni}
Probab=99.76 E-value=1.7e-17 Score=153.41 Aligned_cols=193 Identities=13% Similarity=0.161 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215-56646899
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPA-STTDMFAY 89 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 89 (216)
..||++|++||.++|.++||+++||++||++||||+||||+||+||++|+.++++...+.+...+...... ...++.+.
T Consensus 12 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tlY~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (210)
T 2qco_A 12 LARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIKNGTLKEI 91 (210)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHCTTCTTCSSSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 89999999999999997393528899999985889025887598999999999999999999999998764022219999
Q ss_pred HHHHHHHHHHHHHHCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 999999999998708089--99999998616404899999999999999999999998648-899999988999999999
Q T0575 90 LRWLLDVGIQFQFHNPRL--AQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADG-SLVPDLDADTAAFVLNVV 166 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~ 166 (216)
+..+...+......++.. ...+........+.......... .......+......+ ......++...+..+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 168 (210)
T 2qco_A 92 LTSFGLAFIEIFNQPEAVAFGKIIYSQVYDKDRHLANWIENNQ---QNFSYNILMGFFKQQNNSYMKKNAEKLAVLFCTM 168 (210)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHHGGGCSSCHHHHHHHHST---TSSTHHHHHHHHHSSSCHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999860616689999999976038899999999988---9999999999999863677889999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999963389907789999999889999999999999999700169
Q T0575 167 FTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
+.+...++......... ....+.+.++..++++.+||+..
T Consensus 169 ~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~v~~fl~Gi~~~ 208 (210)
T 2qco_A 169 LKEPYHHLNVLINAPLK----------NKKEQKEHVEFVVNVFLNGINSS 208 (210)
T ss_dssp HHTTHHHHHHHHCCCCC----------CHHHHHHHHHHHHHHHHTCSCC-
T ss_pred HHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999986589999----------99999999999999997756879
No 63
>3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3}
Probab=99.76 E-value=8e-17 Score=148.30 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=113.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+.+ ..+||++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+.....
T Consensus 3 mprr~----~~erR~~Il~AA~~l~~~~G~~~~t~~~IA~~aGvs~~~~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~ 78 (201)
T 3iuv_A 3 MPRRH----DPERRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGFARVVAAHPA 78 (201)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCCC----CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999----87999999999999999849130679999998689945199875999999999999999999999997642
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
. ..+..+.+..+...+......++............. .....+......+...+...+. .+ +++..+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~a 145 (201)
T 3iuv_A 79 L-SDPEADLSGELARVLGEWLGGDRTGVELEYELYLAA--LRRPALRPVAAEWAEGVGALLA----AR------TDPTTA 145 (201)
T ss_dssp G-GCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHSSCHHHHHHHHHHHHHHHHH----HH------SCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHC----CC------CCHHHH
T ss_conf 4-997999999999999999755567889999998742--3789999999999999998854----46------969999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999999999963389907789999
Q T0575 161 FVLNVVFTELGNHLIERFAVNPAELLREG 189 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (216)
..+...+.++...++........+...+.
T Consensus 146 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 3iuv_A 146 RALVAVLDGICLQVLLTDTPYDEEYAREV 174 (201)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999999999866899999999999
No 64
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=99.76 E-value=1.9e-17 Score=153.17 Aligned_cols=186 Identities=15% Similarity=0.223 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.+++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++....+.+...+..... ...++.+.
T Consensus 20 ~~~~r~~Il~aA~~l~~~~G~~~~si~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 98 (207)
T 3bjb_A 20 QRARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVDQIDRMGVGFKKSAP-PGESPQDA 98 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTCC-----------CSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHH
T ss_conf 79999999999999999739030779999999890998997757999999999999999999999998733-69999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.+...++.+...+.................. ...+...+.+....+ .+..++...+..+..++.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 172 (207)
T 3bjb_A 99 VYNVLVRATRGLLRRPALSTAMIQSTSTANVASVPDAGKV----DRAFRQIMLDAAGIE--HPTEEDLTALRLLVQLWFG 172 (207)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHCCTTTCGGGGGH----HHHHHHHHHTTCC----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999998795999999972024573468999999----999999999985556--8986659999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999963389907789999999889999999999999999700169
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
+...+..... .. +.....++..+++|..|+..|
T Consensus 173 ~~~~~~~~~~-~~-------------~~~~~~~~~~~~~ll~~l~~r 205 (207)
T 3bjb_A 173 VIQSCLNGRV-SI-------------PDAESDIRRACDLLLVNLSHR 205 (207)
T ss_dssp HHHHHHTTSS-CH-------------HHHHHHHHHHHHHHTTTCC--
T ss_pred HHHHHHHCCC-CC-------------HHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999982799-80-------------229999999999998414657
No 65
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.76 E-value=1.7e-16 Score=145.81 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
|+.+|++|++||.++|.++||+++|+++||++||||+|+||+||+||++|+.+++++..+.+...+...... ..++.+.
T Consensus 1 s~a~R~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (189)
T 3geu_A 1 SNAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNK-SNYSIDA 79 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHH
T ss_conf 968999999999999987191528899999987909879989879999999999999999999999987605-8999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999987080899999999861640489999999999999999999999864889999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPD 153 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~ 153 (216)
+..++..+.... +..............+................+...+..+++.|.+..+
T Consensus 80 l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (189)
T 3geu_A 80 LYQFLFEFIFDI---EERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMT 140 (189)
T ss_dssp HHHHHHHHHHHS---CHHHHHHHHHGGGCCGGGCTTHHHHHHHHHHHHHHHHHTTCCTTTBCSC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999985---7578999999975787447999999999999999999999983999999
No 66
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=99.76 E-value=3.1e-18 Score=159.22 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.+++|++|++||.++|.++||+++|+++||++||||+||||+||+||++|+.+++++..... .. .........++.+.
T Consensus 5 ~e~tre~Il~aA~~lf~e~G~~~~si~~IA~~agvs~~tlY~yF~~K~~L~~av~~~~~~~~-~~-~~~~~~~~~~~~~~ 82 (186)
T 2jj7_A 5 REQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGLAN-EL-PNFLEKNQFNPINA 82 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHSCSS-CC-CCHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH-HH-HHHHHHCCCCHHHH
T ss_conf 78999999999999999859141879999998791988777877999999999999999888-77-99987523678999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVL 163 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~ 163 (216)
+..++..++.+...+|....++..+....++... .+..........+.+++.++++.|.+++. ++......+
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~g~~~G~~~~~-~~~~~~~~i 154 (186)
T 2jj7_A 83 LREYLTVFTTHIKENPEIGTLAYEEIIKESARLE-KIKPYFIGSFEQLKEILQEGEKQGVFHFF-SINHTIHWI 154 (186)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHSCCTTHH-HHGGGTHHHHTTHHHHHHHHHHTTSCCCS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHH
T ss_conf 9999999999999793899999998741807799-99999999999999999999987998999-999999999
No 67
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=99.76 E-value=8.6e-16 Score=140.29 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
.++++|++|++||.++|.++||+++||++||++||||+++||+||+||++|+.+++.+..+.+...+.......+...
T Consensus 20 ~~~~~R~~Il~AA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~-- 97 (231)
T 2zcx_A 20 AKQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLRYFETREQIFLKITAEGWKEWSAELCARLRELPGAA-- 97 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--
T ss_conf 399999999999999999709540779999999695989997887999999999999999999999999874599440--
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999999870808999999998616-4048999999999999999999999986488999999889999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDD-VPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVF 167 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 167 (216)
.......+......+|....+........ .....+............+..........+.. +.......+...+
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 172 (231)
T 2zcx_A 98 -PDAVGQVFAATLAARPLFCDLLAQAPLNLERNVSVESVRSFKIATLDEVGRIGAELRRLLGV----DETQAVDVIATAT 172 (231)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHH
T ss_conf -99999999999986925889999998751124578999999999999999999999985278----8647999999999
Q ss_pred HHHHHHHHHHCCCCH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999996338990-7789999-99988999999999999999970016
Q T0575 168 TELGNHLIERFAVNP-AELLREG-GIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
..+...+........ ....... ........+...+...++.+.+||..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~l~~ll~Gla~ 222 (231)
T 2zcx_A 173 SLAGALWQMATPGPHIQTLYRSDPRLAHAVVEVEPRLNRVLGALLRGIAD 222 (231)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHCGGGGGGSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998635468999998609243544245999999999999988008
No 68
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=99.76 E-value=4.9e-17 Score=149.93 Aligned_cols=165 Identities=19% Similarity=0.218 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521-55664689
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP-ASTTDMFA 88 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (216)
++++|++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.+++....+.+.+.+..... ....++.+
T Consensus 41 ~~~tr~~Il~aA~~Lf~~~G~~~~tv~~IA~~AGvs~~t~Y~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (229)
T 3bni_A 41 SAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGGWRG 120 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999999999999859020769999999791998999986999999999999999999999999874168999999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+..++..+......+|....+........ ..............+.+.+...... .+..+.......+..++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 193 (229)
T 3bni_A 121 ALDTVLDEYLAMKRTAPGFSLIDFGNQIPV----GDRHAVPNHRVAERLTELLSGYLGR---RPDDDLRRVFLVAVETAD 193 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTTTCSCC------------------CHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHH
T ss_conf 999999999999865928999997076786----2568999999999999999997166---887569999999999999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999633899
Q T0575 169 ELGNHLIERFAVN 181 (216)
Q Consensus 169 ~~~~~~~~~~~~~ 181 (216)
++...........
T Consensus 194 ~~~~~~~~~~~~~ 206 (229)
T 3bni_A 194 TLVQLAFRVAPDG 206 (229)
T ss_dssp HHHHHHHHHSTTC
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999997469855
No 69
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=99.75 E-value=3.4e-16 Score=143.42 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-------
Q ss_conf 7888999999999999874910354799999847785455402688889999999999999999998752155-------
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPAS------- 82 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~------- 82 (216)
.+|+|++||++|.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+...+.......
T Consensus 5 ~~etre~IldaA~~lf~~~G~~~~s~~~IA~~agvs~~~lY~~F~sK~~L~~av~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (235)
T 2fbq_A 5 QSETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFLGPFCASLEKELDRRQAKPEAQ 84 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 38999999999999999859240779999999793988999985999999999999999999999999986277965566
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 664689999999999999870808999999998----6164048999999999999999999999986488999999889
Q T0575 83 TTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKAL----YDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADT 158 (216)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 158 (216)
.......+..++.........++.......... ....+................+...+ .. ..++.+...
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~ 158 (235)
T 2fbq_A 85 HATLEDLLHLLVSQAMAVKPRSGNDLSIFMRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLV----NE--AAPKLPPIE 158 (235)
T ss_dssp CCCHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH----HH--HSCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH----HH--HCCCCCHHH
T ss_conf 658999999999999988661403788999999986126769999999999999999999999----98--779999899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999996338990778999999988999999999999999970016
Q T0575 159 AAFVLNVVFTELGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
....+..+...+...+..... ...............+..++.+++++..|++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~gl~a 211 (235)
T 2fbq_A 159 LFWRVHFMLGAAAFSMSGIKA----LRAMAETDFGVNTSTEQVMHLMVPFFAAGMRA 211 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH----HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999997899----99873566678889999999999999998669
No 70
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=99.75 E-value=3.5e-17 Score=151.07 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 78878889999999999998749103547999998477854554026888899999999999999999987521556646
Q T0575 7 FNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDM 86 (216)
Q Consensus 7 ~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (216)
...++++|++|++||.++|.++||+++||++||++||||+++|||||+||++|+.+++....+.+.+.. ......
T Consensus 25 ~~~~~~tR~~Il~AA~~lf~~~G~~~~Tv~~Ia~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~----~~~~~~- 99 (226)
T 2pz9_A 25 GGSTDSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAHVAERETTALIEAT----QLDPAD- 99 (226)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHT----CCCTTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----CCCHHH-
T ss_conf 887899999999999999998593528899999996948747978859999999999999889988862----145545-
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999999999999870808999999998616404899999999999999999999998648899999988999999999
Q T0575 87 FAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVV 166 (216)
Q Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 166 (216)
.......++.+...++...+.+............ ............+...+.+++..|.+++++++..+...+.++
T Consensus 100 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~ 175 (226)
T 2pz9_A 100 ---LPGYAGILFDHFAARPDHYRLITWGRLELAESAD-NTSGPLQATIAGKLDKLRDAQRIGLLDPAWDPVDVLALINQI 175 (226)
T ss_dssp ---HHHHHHHHHHHHHHCHHHHHHHHHHHHHTC---------CHHHHHHHHHHHHHHHHHTTSSCTTSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf ---6899999999999887999999999862530029-999999999999999999999849999999999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q T0575 167 FTEL 170 (216)
Q Consensus 167 ~~~~ 170 (216)
..++
T Consensus 176 ~~~~ 179 (226)
T 2pz9_A 176 AMTW 179 (226)
T ss_dssp HTHH
T ss_pred HHHH
T ss_conf 9999
No 71
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=99.75 E-value=7.5e-16 Score=140.77 Aligned_cols=175 Identities=15% Similarity=0.267 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 89999999999998749103547999998477854554026888899999999999999999987521556646899999
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLRW 92 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (216)
||++|+++|.++|.++||+++|+++||++||||++|||+||+||++|+.++++...+.+...+.... ..++.+.+..
T Consensus 3 TRe~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~tiY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 79 (179)
T 2eh3_A 3 TKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIERTHKKIISLFEENK---EKTPEELLEM 79 (179)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTT---TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHH
T ss_conf 9999999999999974925176999999878093415451899999999999999999999998602---3899999999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999870808999999998616404899999999999999999999998648899999988999999999999999
Q T0575 93 LLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTELGN 172 (216)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (216)
++ .+...++.....+.......... ..............+...+..+. ..+++..+..+.+++.++..
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 147 (179)
T 2eh3_A 80 FL----EVLYREKKVVYIFLFDLLCSEKF-RNIYFEKIEDAKRRFEKFLEKHF-------PSKAEILSEIILGFLRQLIL 147 (179)
T ss_dssp HH----HHHHHTHHHHHHHHHHTTTCSTT-HHHHHHHHHHHHHHHHHHHHHHC-------TTTHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHCHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHH
T ss_conf 99----99987706799999986158888-99999999999999999997618-------98899999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9996338990778999999988999999999999999970016
Q T0575 173 HLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
++........ +...+.+...++++.+|+++
T Consensus 148 ~~~~~~~~~~-------------~~~~~~~~~~l~~~~~Gl~~ 177 (179)
T 2eh3_A 148 HYVIKEEREL-------------PFLKEKLREGLKLIFEGVKK 177 (179)
T ss_dssp HHTTTSCCCH-------------HHHHHHHHHHHHHHC-----
T ss_pred HHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCC
T ss_conf 9976588662-------------67999999999999987535
No 72
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=99.75 E-value=2.8e-18 Score=159.56 Aligned_cols=168 Identities=17% Similarity=0.134 Sum_probs=119.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+... ++..|++||++|.++|.++||+++||++||++||||+|+||+||+||++|+.+++.+..+.+...+.....
T Consensus 3 ~~~~R~---r~~~Re~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~~lY~~F~sKe~L~~av~~~~~~~~~~~~~~~~~ 79 (202)
T 2i10_A 3 MPGGRR---RGFDDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRYMCERTLQLEEAMV 79 (202)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHCSCCHHHHHHHHT
T ss_pred CCCCCC---CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989999---98619999999999999869211779999999790999998871899999999999988899999999872
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHH-HH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55664689999999999999870808999-99---999861640489999999999999999999999864889999998
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQ-IA---YKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDA 156 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~ 156 (216)
.. ..... +................... .. ........+.....+..........+.+++..+++.|+++++.|+
T Consensus 80 ~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~d~ 157 (202)
T 2i10_A 80 RP-TAHEA-VLDFLTGRVEVFTAPGQPFGCMTVQAGLASGEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPAGTDC 157 (202)
T ss_dssp SS-SHHHH-HHHHHHHHHHHHC------CCCCSSCBTTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTCCH
T ss_pred CC-CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 88-61037-99999999999874201255899999998702689999999999999999999999999985999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999
Q T0575 157 DTAAFVLNVVFTELGNH 173 (216)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (216)
+.++..+.+.+.|+...
T Consensus 158 ~~~a~~l~~~~~G~~~~ 174 (202)
T 2i10_A 158 TALARYVMAAVYGLSVE 174 (202)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 73
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=99.75 E-value=2.4e-16 Score=144.58 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
++-|++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.++++...+.+.+.+...... .++.+.+
T Consensus 6 ~~lR~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 83 (192)
T 2zcm_A 6 HHMKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYFIDFMMRNHDD--NYSIDGL 83 (192)
T ss_dssp --CHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC---------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHH
T ss_conf 99999999999999987392507799999987919889988879999999977999999999999975358--9819999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999998708089999999986164048999999999999999999999986488999999889999999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTEL 170 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (216)
...+ ..+...++.....+........+...+............+.+.+..+.+.|... .++......+...+.+.
T Consensus 84 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~i~~~~~~~ 158 (192)
T 2zcm_A 84 YQFL---FKFIFDVDERYIKLYVQLSSAPEALNSEIKHHLQEINTTLHDELIKYYDPTHIA--LDKEDFINMILMFLETW 158 (192)
T ss_dssp HHHH---HHHHHHSCHHHHHHHHGGGGCCGGGHHHHHHHHHHHHHHHHHHHHHHCCTTTBS--SCHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHH
T ss_conf 9999---999987543799999998727876689999999999999999999998689989--99999999999999999
No 74
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=99.75 E-value=9.2e-16 Score=140.08 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
+++||++|++||.++|.++||+++|+++||++||||+||||+||+||++|+.+++....+.+...+...... .++.+.
T Consensus 24 ~~~tr~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 101 (217)
T 3mvp_A 24 SIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKRYNDFFLTTIFADINS--QDSLDR 101 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTHHHHSS--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHH
T ss_conf 999999999999999987193427899999987809441554299999999999999999999999987516--992999
Q ss_pred HHH----HHHHHHHHH-HHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 999----999999998-708089999999986164048999999999999999999999986488999999889999999
Q T0575 90 LRW----LLDVGIQFQ-FHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLN 164 (216)
Q Consensus 90 l~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~ 164 (216)
+.. ++..++... ..+...............+................+...+..+...+... +.......+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~ 178 (217)
T 3mvp_A 102 FKKNPKEWLNVLINQLLAAEDKIFHAQIEMLAYAIPQAKALLEEHNNNLKNLTYKCLLYYSDQAANP---SFKTLSLVVF 178 (217)
T ss_dssp HHHCHHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHH
T ss_conf 9999999999999987622237999999987415889999999999999999999999998737899---8203999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q T0575 165 VVFTELGNHLI 175 (216)
Q Consensus 165 ~~~~~~~~~~~ 175 (216)
..+.++...+.
T Consensus 179 ~~~~~~~~~~~ 189 (217)
T 3mvp_A 179 DFISALVDELL 189 (217)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 75
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3}
Probab=99.75 E-value=2.7e-17 Score=151.94 Aligned_cols=169 Identities=17% Similarity=0.160 Sum_probs=116.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||++. .++|++|++||.++|.++||+++|+++||++||||+||||+||+||++|+.++++...+.+...+....
T Consensus 1 M~R~~-----~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~Ll~a~~~~~~~~~~~~~~~~~- 74 (195)
T 2dg7_A 1 MARWD-----PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVLFGGSELLPPAVARAVLAAD- 74 (195)
T ss_dssp CCSSC-----TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGTTTSSCCHHHHHHHHHTSC-
T ss_pred CCCCC-----CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 94348-----139999999999999986915177999999848693413542898899999999999998899998633-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 55664689999999999999870808999999998616404899999999999999999999998648899999988999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAA 160 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 160 (216)
...++.+.+...+..+......++............ .+..... .......+.+.+.+++..+.+.+ .++...+
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~ 147 (195)
T 2dg7_A 75 -PGAAPLTAVLDAMSQVGAQLVAQVEGAAQRRAVIDA-SPELQER----ERTKSAAISRAVQDALVRRQVDA-DTAELVA 147 (195)
T ss_dssp -TTSCHHHHHHHHHHHHTTTTTTCCTTHHHHHHHHHT-CHHHHHH----HHHHHHHHHHHHHHHHHHTTCCH-HHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH----HHHHHHHHHHHHHHHHHHCCCCC-CCHHHHH
T ss_conf -589949999999999999998601689999999860-5158999----99999999999999998369998-8799999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999999999999996338990
Q T0575 161 FVLNVVFTELGNHLIERFAVNP 182 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ 182 (216)
..+...+.+....|.......+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 2dg7_A 148 QLATVAFGSAFRRWIDAEGHAD 169 (195)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999986689999
No 76
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=4.1e-17 Score=150.49 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
++||++|+++|.++|.++||+++|+++||++||||++|||+||+||++|+.+++....+.+...+......... +....
T Consensus 14 ~~rR~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~yF~sKe~Ll~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~ 92 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGDRVSAP-QLADH 92 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHTSSCCCCCCCSCCCHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHH
T ss_conf 19999999999999997490408799999998909879998879989999999999999999999998740353-19999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHH---HHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999870808999999---998616-404899999999999999999999998648899999988999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAY---KALYDD-VPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVV 166 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 166 (216)
...+...+.....++....... ...... ..................+..++..+...|.+..+ |++..+..+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-d~~~~a~~l~~~ 171 (221)
T 3c2b_A 93 LEVFAHDLLDVLAGDVSLALNRLAIGQASRDGSKLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFD-DAEEAYRSFYGL 171 (221)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---CHHHHHHHHTTHHHHHHHHHHHHHHHHTTSBCCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHH
T ss_conf 9999999999872125789999999986025779999999999999999999999999986999999-999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0575 167 FTELGNHLI 175 (216)
Q Consensus 167 ~~~~~~~~~ 175 (216)
+.+......
T Consensus 172 ~~~~~~~~~ 180 (221)
T 3c2b_A 172 IVSDLHVRM 180 (221)
T ss_dssp HHTTHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 77
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=99.74 E-value=2.1e-16 Score=145.00 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
.+.++|++|+++|.++|.++||+++||++||++||||+|+||+||+||++|+.++++...+.+.+.+...... ..++.+
T Consensus 5 ~~a~tR~~Il~aA~~l~~~~G~~~~s~~~Ia~~agvs~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 83 (194)
T 3dpj_A 5 VQAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGT-GDSPRA 83 (194)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHH
T ss_conf 2999999999999999997492518899999985849566875468999999999999999999999987726-750688
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999987080899999999---861640489999999999999999999999864889999998899999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKA---LYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNV 165 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~ 165 (216)
.+...+..+......++......... .....+..... .......+.+.+..+...+.. +.++...+..+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~--~~~~~~~a~~~~~ 157 (194)
T 3dpj_A 84 RIASFIDLMIMNRAKITRYGCPVGSLCTELSKLDHAAQGQ----ANGLFTLFRDWLQRQFAEAGC--TTEAPALAMHLLA 157 (194)
T ss_dssp HHHHHHHHHHHTHHHHHHHCCHHHHHHHHHHHTTCTTHHH----HTHHHHHHHHHTHHHHHHTTT--CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
T ss_conf 9999999999987510466689999998612488999999----999999999999999974489--9987999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0575 166 VFTELG 171 (216)
Q Consensus 166 ~~~~~~ 171 (216)
.+.|..
T Consensus 158 ~~~g~~ 163 (194)
T 3dpj_A 158 RSQGAA 163 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 78
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=99.74 E-value=2.1e-16 Score=145.03 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
+-+|++|++||.++|.++||+++||++||+++|||++|||+||+||++|+.++++...+.+... .......++.+.+
T Consensus 24 ~~~Re~Il~AA~~lf~e~G~~~~T~~~IA~~aGvs~~tlY~~F~sKe~Ll~a~~~~~~~~~~~~---~~~~~~~~~~~~~ 100 (211)
T 3fiw_A 24 KMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMAQAAMAPHAAE---PLPEPGEDWHGWF 100 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHHHHTTHHHHTS---CCCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCC---CCCCCCCCHHHHH
T ss_conf 8799999999999999859353659999999893886999988999999999999888887432---4576689989999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999998708089999999986164048999999999999999999999986488999999889999999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTEL 170 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (216)
..+...+..+...+|....+....... +. .... ...+......| +.+ .+.......+.....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-----------~~~~~~l~~~g-l~~-~~~~~~~~~l~~~~~g~ 164 (211)
T 3fiw_A 101 LRNTRSFRRTLLARRDGARLHAGSRPT--AD-LDRV-----------RRKMDFLVASG-VPE-RHAQMAMLAAGRFTVGC 164 (211)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHHHTCCC--CC-HHHH-----------HHHHHHHHHTT-CCH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCC--CH-HHHH-----------HHHHHHHHHCC-CCH-HHHHHHHHHHHHHHHHH
T ss_conf 999999999999791179998652364--43-9999-----------99999998859-998-99999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999963389907789999999889999999999999999700169
Q T0575 171 GNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRRR 216 (216)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~r 216 (216)
...+........ ................++..++++..||++|
T Consensus 165 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~f~~~l~~ll~Gl~~~ 207 (211)
T 3fiw_A 165 VLEEQAETGAGD---TADLPADVPEIDHESAFEAGLALITDGLVRH 207 (211)
T ss_dssp HHHHHHC------------------CCHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHCCCCH---HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999987502310---2214321356898999999999999999987
No 79
>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP}
Probab=99.73 E-value=1.3e-16 Score=146.66 Aligned_cols=167 Identities=10% Similarity=0.056 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHH
Q ss_conf 7888999999999999874910354799999847785455402688889999999999999999998752155-664689
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPAS-TTDMFA 88 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (216)
+.+||++|++||.++|.++||+++|+++||++||||+|+||+||+||++|+.++++...+.+...+....... ..++.+
T Consensus 26 ~~erR~~Il~AA~~l~~~~G~~~~Ti~~IA~~aGvs~~~lY~~F~sK~~Ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKRIHERLGPDPSVVEESGRKPQNLE 105 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHHGGGTC---------------CHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 98999999999999999849140779999998689963278658989999999999999999999999874368987999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+..++.........++....+........ ....+............+...+..+...|.. ++...+..+...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~l~~~~~ 180 (215)
T 2qko_A 106 LAIEYMQGLFGRITRDRTGYLALQELRLEA-VRRPELRTTLTRTISENLKRDIGFHLDSGLP----GDRSTVLMLYLAMN 180 (215)
T ss_dssp HHHHHHHHHTTTTTTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTCS----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHH
T ss_conf 999999999999860848999999999852-5799999999999999999999987545899----95899999999999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999633899
Q T0575 169 ELGNHLIERFAVN 181 (216)
Q Consensus 169 ~~~~~~~~~~~~~ 181 (216)
++...++......
T Consensus 181 g~~~~~l~~~~~~ 193 (215)
T 2qko_A 181 ALIVEHLTLPGVL 193 (215)
T ss_dssp HHHHHHHHCGGGS
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999999768999
No 80
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=99.73 E-value=4.1e-16 Score=142.81 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPAS 82 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~ 82 (216)
.+++||++||+||.++|.++||+++||++||++||||+|+||+||+||++|+.+++++..+.+.+.+.......
T Consensus 32 ~~e~rR~~Il~aA~~l~~e~G~~~~si~~IA~~agvs~~tlY~yF~sKe~L~~a~~~~~~~~~~~~~~~~~~~~ 105 (237)
T 3kkd_A 32 GSEQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDTFALFVERNAEALSAFWSSV 105 (237)
T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999999999999974925087999999989298999887889999999999999999999999987356
No 81
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=99.73 E-value=7.8e-17 Score=148.37 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++|++||.++|.++||+++||++||++||||++|||+||+||++|+.++.... ......... ....++.+.
T Consensus 46 ~~~tR~~Il~AA~~lf~e~G~~~vTv~~IA~~AGVs~gtlY~hF~sK~~Ll~a~~~~~---~~~~~~~~~-~~~~~~~~~ 121 (260)
T 2of7_A 46 KTRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPTREDIVLTDEYDP---VMAAELAAR-PAGEPWSDS 121 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHTSSCSHH---HHHHHHHTC-CSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH---HHHHHHHHH-CCCCCHHHH
T ss_conf 9999999999999999981945388999999969889899998589999999999999---878898652-148999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..++.....++......+.......+.....+..........+.+.+... .|....+.++..++..+.+.+.+
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~--~g~~~~~~~~~~~a~~~~~~~~~ 199 (260)
T 2of7_A 122 LRHVLRKALGLGAGEEAELIRLRTRLLAEVPAVRARMLENMSDTGRMLARAIADR--TGLDPDGLEVRIVSMSLVGGLME 199 (260)
T ss_dssp HHHHHHHHHTCSSSSHHHHHHHHHHHHHHCHHHHHHHHHHTTSCCCHHHHHHHHH--HCCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999985064899999998713798999999999999999999999986--38997744799999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999963389907789999999889999999999999999700
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGM 213 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl 213 (216)
+...|........ +...++.++++|..||
T Consensus 200 ~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~gl 228 (260)
T 2of7_A 200 VSRYWAEHDHEES---------------LAELVDRALDALENGL 228 (260)
T ss_dssp HHHHHHHHTTTCC---------------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCCCC---------------HHHHHHHHHHHHHHHC
T ss_conf 9999987689899---------------9999999999999654
No 82
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=99.73 E-value=2.3e-15 Score=136.99 Aligned_cols=163 Identities=18% Similarity=0.127 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
.+||++|+++|.++|.++||+++|+++||++||||+++||+||+||++|+.++++...+.+...+...... ..++.+.+
T Consensus 8 ~~rR~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~y~~F~sKe~L~~av~~~~~~~~~~~~~~~~~~-~~~~~~~~ 86 (193)
T 2dg8_A 8 PQRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDHIVAVFDEHLGA-AADRDEAR 86 (193)
T ss_dssp TTHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-CCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHH
T ss_conf 79999999999999997290406799999998909999976638999999999999999999999887334-89989999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999987080899999999861--640489999999999999999999999864889999998899999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYD--DVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
..+..........++....+....... ..+... .........+.. .. ....++. .+..+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~l-----~~~~~~~-~a~~l~~~i~ 152 (193)
T 2dg8_A 87 EAVADLVHELSEDSQRDLVLTQELYTLAARQPAYR----ELTHEWMRRSRV----HL-----EKHFDPG-TARQLDALIE 152 (193)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHHH----HH-----TTTSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHH----HH-----HCCCCHH-HHHHHHHHHH
T ss_conf 99999999999842266899999997514799999----999999999999----87-----4217889-9999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999996338990778999
Q T0575 169 ELGNHLIERFAVNPAELLRE 188 (216)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (216)
|+...+.........+...+
T Consensus 153 g~~~~~~~~~~~~~~~~~~~ 172 (193)
T 2dg8_A 153 GLTLHRALAREPHGRALTLE 172 (193)
T ss_dssp HHHHHHHTCSSCCCHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHH
T ss_conf 99999987589888999999
No 83
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=99.72 E-value=3.5e-17 Score=151.09 Aligned_cols=165 Identities=12% Similarity=0.223 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 7888999999999999874910354799999847785455402688-889999999999999999998752155664689
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD-KKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s-Ke~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
++++|++|++||.++|.++||+++|+++||++||||+|+||+||+| |+.|+.++.....+.+...+..... ...++.+
T Consensus 4 r~~tR~~Il~aA~~l~~~~G~~~~si~~Ia~~agvs~~tiY~~F~~kk~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 82 (191)
T 1sgm_A 4 RGDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMD-ESSDPVE 82 (191)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHH
T ss_conf 089999999999999998390306699999987909889988859908889999999998889999987651-2302578
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+..++..+......++..............+...+.+..........+.+.+..++..+.+.+ .++...+..+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~a~~~~~~~~ 161 (191)
T 1sgm_A 83 AIQLFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTVCMKVFKSWEAVFARKLMENGFAE-EEANQLGTLINSMIE 161 (191)
T ss_dssp HHHHHHHHHHHTTSSGGGCCCCTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHH
T ss_conf 9999999999997403034688999998622457899999999999999999999998769996-579999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999996
Q T0575 169 ELGNHLIE 176 (216)
Q Consensus 169 ~~~~~~~~ 176 (216)
|.......
T Consensus 162 G~~~~~~~ 169 (191)
T 1sgm_A 162 GGIMLSLT 169 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999988
No 84
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3}
Probab=99.71 E-value=1.8e-15 Score=137.85 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
..+|++|+++|.++|.++||+++||++||+++|||+++||+||+||++|+.++++.....+.. ........++.+.+
T Consensus 15 ~~tr~~Il~aA~~l~~e~G~~~~t~~~IA~~aGvs~~~lY~~F~~K~~L~~av~~~~~~~~~~---~~~~~~~~~~~~~l 91 (237)
T 2hxo_A 15 PLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATDAVVTAAVT---AGPTGAADSPQDAV 91 (237)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHHHHHHHHHHT---CSCCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHH
T ss_conf 558999999999999972924067999999979098889888799999999999999988642---12233359999999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 999999999987080899999999861
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYD 117 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (216)
+.+...+.+....+|.....+......
T Consensus 92 ~~~~~~~~~~~~~~p~~~~~l~~~~~~ 118 (237)
T 2hxo_A 92 RAVALGLWDATEAHPWLATQLATQLSR 118 (237)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 999999999999890599999761036
No 85
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=99.70 E-value=4.3e-16 Score=142.62 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=106.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
||+.. .++|++|+++|.++|.++||+++|+++||++||||+|+||+||+||++|+.+++.+..+.+...+....
T Consensus 2 M~R~~-----~~tre~Il~aA~~l~~e~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~- 75 (195)
T 3frq_A 2 MPRPK-----LKSDDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQVRHYLNAIP- 75 (195)
T ss_dssp ----C-----CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred CCCCC-----CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 79894-----157999999999999974923077999999878997717676779999999999999999999998644-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 5566468999999999999987080899999999-861640489999999999999999999999864889999998899
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKA-LYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTA 159 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~ 159 (216)
..++.+.+...+..++.....++......... .....+. +..........+...+ .. .+. +.++...
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l----~~-~~~-~~~~~~~ 143 (195)
T 3frq_A 76 --IGAGPQGLWEFLQVLVRSMNTRNDFSVNYLISWYELQVPE----LRTLAIQRNRAVVEGI----RK-RLP-PGAPAAA 143 (195)
T ss_dssp --CCCHHHHHHHHHHHHHHTSCCSSCTTHHHHHHHHHHHSHH----HHHHHHHHHHHHHHHH----HT-TCC-TTCCTTH
T ss_pred --CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHH----HH-HCC-CCCHHHH
T ss_conf --4799999999999999998436369999999976427999----9999999999999999----85-669-8888999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999999633899
Q T0575 160 AFVLNVVFTELGNHLIERFAVN 181 (216)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (216)
+..+..++.|....|.......
T Consensus 144 ~~~~~~~~~g~~~~~~~~~~~~ 165 (195)
T 3frq_A 144 ELLLHSVIAGATMQWAVDPDGE 165 (195)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999998779976
No 86
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=99.70 E-value=2.1e-15 Score=137.23 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.+++|++|++||.++|.++| .+||++||++||||+||||+||+||++|+.++++...+.+...+..... ...++.+.
T Consensus 12 r~~tr~~Il~aa~~l~~~~G--~~T~~~IA~~agvs~~tlY~~F~sKe~L~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (190)
T 2v57_A 12 RERTRRAILDAAMLVLADHP--TAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADP-TSGPVDAA 88 (190)
T ss_dssp -CHHHHHHHHHHHHHHTTCT--TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCT-TSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHH
T ss_conf 79999999999999998869--9629999999691999997773899999999999999999999998764-69999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899999988999999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTE 169 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 169 (216)
+..++..+.+ ++.....+..... ....+.+..... .....++......|.+.++.++..+...+.+++.+
T Consensus 89 l~~~~~~~~~----~~~~~~~l~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2v57_A 89 LRRVVESQLD----LGPIVLFVYYEPS---ILADPELAAYFD---IGDEAIVEVLNRASTERPEYPPGWARRVFWALMQA 158 (190)
T ss_dssp HHHHHHHHHT----TCTHHHHHHHCTT---TTTSHHHHHHHT---CSCHHHHHHHHHTC-----CCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHCCC---CCCCHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999997----1289999986544---448899999999---99999999999819888999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999996338990778999999988999999999999999970016
Q T0575 170 LGNHLIERFAVNPAELLREGGIVLLQPAMRRVIEQVIDILERGMRR 215 (216)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Gl~~ 215 (216)
.. +.......+ ....+.+++.+..||..
T Consensus 159 ~~--~~~~~~~~~----------------~~~~~~~~~~l~~gi~~ 186 (190)
T 2v57_A 159 GY--EAAKDGMPR----------------HQIVDAIMTSLTSGIIT 186 (190)
T ss_dssp HH--HHHHTTCCH----------------HHHHHHHHHHHHHCSCC
T ss_pred HH--HHHHCCCCH----------------HHHHHHHHHHHHHHCCC
T ss_conf 99--985058999----------------99999999999987578
No 87
>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680}
Probab=99.69 E-value=3.1e-15 Score=136.00 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.+++|++|+++|.++|.++|| ++|+++||++||||+|+||+||+||++|+.+++++..+.+.+.+...... ..++...
T Consensus 7 ~~~~R~~Il~aA~~l~~~~G~-~~t~~~IA~~aGvs~~~iy~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (190)
T 3jsj_A 7 KQSPRERLLEAAAALTYRDGV-GIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADD-GRSPRER 84 (190)
T ss_dssp CCCHHHHHHHHHHHHHHHHCT-TCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTS-CCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHH
T ss_conf 641999999999999997698-88299999997909999988829999999999999999999999998741-6755788
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999987080899999999---8616404899999999999999999999998648899999988999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKA---LYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVV 166 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 166 (216)
+...+..+.......+.....+... .....+............ +.+.+......+. ..+++..+..+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~a~~l~~l 157 (190)
T 3jsj_A 85 ILYVFERVESQAGAPDFQGCRYLAVQIELKDQAHPASRVAYQIKAD----LMAFFRSEAERGG---ASDPDLLARQLILV 157 (190)
T ss_dssp HHHHHHHHHHHHTSTTCCSCHHHHHHHHHCCTTSHHHHHHHHHHHH----HHHHHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHCC---CCCHHHHHHHHHHH
T ss_conf 8999999999971543010499999876256788999999999999----9999999998839---99999999999999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999633
Q T0575 167 FTELGNHLIERF 178 (216)
Q Consensus 167 ~~~~~~~~~~~~ 178 (216)
+.|+...+....
T Consensus 158 ~~G~~~~~~~~~ 169 (190)
T 3jsj_A 158 FDGASARAGIGA 169 (190)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHCC
T ss_conf 999999987749
No 88
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=99.69 E-value=1.4e-15 Score=138.74 Aligned_cols=108 Identities=19% Similarity=0.331 Sum_probs=83.4
Q ss_pred CCCCCCCC----CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98886678----87888999999999999874910354799999847785455402688889999999999999999998
Q T0575 1 MPTETFFN----LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLR 76 (216)
Q Consensus 1 Mp~~~~~~----~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~ 76 (216)
||++.... -++++|++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.+++.+..+.+.+.+.
T Consensus 1 ~~~~~~~~pr~~~~~~~R~~Il~aA~~l~~~~G~~~~t~~~Ia~~aGvs~gtlY~~F~sKe~L~~a~~~~~~~~l~~~~~ 80 (216)
T 2oi8_A 1 MPEARTSTPRERYRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIRDAYRSQADSLR 80 (216)
T ss_dssp -------CCSSCCHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95899999853127999999999999999971944188999999979798699997599899999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 7521556646899999999999998708089999999
Q T0575 77 QTPPASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYK 113 (216)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (216)
...... ... ......+..+...++.....++.
T Consensus 81 ~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~ 112 (216)
T 2oi8_A 81 AAAASG-ADL----AGLAHALRAWALDDPQRYFLIFG 112 (216)
T ss_dssp HHHHTT-CCH----HHHHHHHHHHHHHCHHHHHHHHS
T ss_pred HHCCCC-CCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 730764-429----99999999999975689999982
No 89
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=99.69 E-value=2e-15 Score=137.44 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
.++++|++||+||.++|.++||+++||++||++||||+++||+||+||++|+.++++...+.+......... ...++.+
T Consensus 27 ~~~~tR~~Il~aA~~l~~~~G~~~~T~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ 105 (212)
T 2np3_A 27 GETRTREAILTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQALELPGKIEEAITAAAQG-GLDGIGE 105 (212)
T ss_dssp --------CHHHHHHHC---------------------------CCC-CHHHHHHHCHHHHHHHHHHHHTSS-CSTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHH
T ss_conf 816999999999999999849230679999999780965544767299999986678677799998765226-8544899
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
.+......+......++....++..... ............. ........ +. .+..++...+..+...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~-~~-~~~~~~~~~a~~~~~~~~ 174 (212)
T 2np3_A 106 RVVRAHLSVWDDVSSRPALMTMVRSAAI-----HRAAAARLRETAT----GILARALG-GV-ITGEDAMLRTSMVATQLV 174 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHCCH------------HHHHHHH----HHHHHHHT-TT-CCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHCCC-----CHHHHHHHHHHHH----HHHHHHHH-HH-CCCCCHHHHHHHHHHHHH
T ss_conf 9999999999876305799999983644-----8268999999999----99999997-65-267752346999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q T0575 169 ELGNH 173 (216)
Q Consensus 169 ~~~~~ 173 (216)
++...
T Consensus 175 g~~~~ 179 (212)
T 2np3_A 175 GLAMM 179 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 90
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=99.69 E-value=7.2e-15 Score=133.13 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
.|||++|+++|.++|.++||+++|+++||++||||+||||+||+||++|+.+++....+.+...+ + ... +
T Consensus 3 ~e~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~sK~~Ll~~~~~~~~~~~~~~~----~--~~~----~ 72 (170)
T 3egq_A 3 TDQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMHAFRKMMEEF----N--PRS----V 72 (170)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHTC----C--CSS----H
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH----H--HHH----H
T ss_conf 68999999999999987292306799999986839420765089999999999999999999876----4--525----9
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999998708089999999986164048999999999999999999999986488999999889999999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTEL 170 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (216)
..++..++.+...++.....+........ .. .+..........+.. .+ ....++...+..+.+++.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~----~~-----~~~~~~~~~a~~l~~~~~g~ 140 (170)
T 3egq_A 73 EEVVDYGIGFIAERREFIEFMMYALSQVR--IE-ELERMFGEALEKVAS----LF-----EGCRHPRETAIALMAMLDGL 140 (170)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHTSC--HH-HHHHHHHHHHHHHHH----HT-----TTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHCCCC--HH-HHHHHHHHHHHHHHH----HH-----HCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999988799999999863332--29-999999999999999----98-----72788389999999999999
Q ss_pred HHHHHHHC
Q ss_conf 99999633
Q T0575 171 GNHLIERF 178 (216)
Q Consensus 171 ~~~~~~~~ 178 (216)
..++....
T Consensus 141 ~~~~~~~~ 148 (170)
T 3egq_A 141 SIYSLYFD 148 (170)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHCC
T ss_conf 99998758
No 91
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=99.68 E-value=2.7e-15 Score=136.51 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
+++|++|++||.++|.++||+++||++||++||||+||||+||+||++|+.++++...+.+.+ .. ......+.
T Consensus 11 ~~tr~~Il~aa~~l~~e~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~----~~--~~~~~~~~- 83 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFK----QG--RDVTFEEY- 83 (177)
T ss_dssp HHHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHHHHHHHTS----CC--CCCCHHHH-
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH----HH--HHHHHHHH-
T ss_conf 999999999999999874974178999999879088765205698678999999998999999----87--87537999-
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999998708089999999986164048999999999999999999999986488999999889999999999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFTEL 170 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 170 (216)
+..+..+...++.....++.. ........ ........+...+.+ .+......+.+.....+.+.+.++
T Consensus 84 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
T 3kkc_A 84 ---LVHILKHFEQNQDSIATLLLS--DDPYFLLR----FRSELEHDVYPRLRE---EYITKVDIPEDFLKQFLLSSFIET 151 (177)
T ss_dssp ---HHHHHHHHHHTGGGHHHHHHT--TCHHHHHH----HHHHHHHHTHHHHHH---HHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHC--CCHHHHHH----HHHHHHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf ---999999999859999999854--88799999----999999999999998---744256773899999999999999
Q ss_pred HHHHHHHCCCCHHHH
Q ss_conf 999996338990778
Q T0575 171 GNHLIERFAVNPAEL 185 (216)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (216)
..+|+......+.+.
T Consensus 152 ~~~~~~~~~~~s~ee 166 (177)
T 3kkc_A 152 LKWWLHQRQKMTVED 166 (177)
T ss_dssp HHHHHHCSSCCCHHH
T ss_pred HHHHHHCCCCCCHHH
T ss_conf 999987699999999
No 92
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A*
Probab=99.67 E-value=8.3e-15 Score=132.68 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
...||++|++||.++|.++||+++||++||++||||+|+||+||+||++|+.++++...+.+...+..... ...++.+.
T Consensus 2 r~~~Re~Il~AA~~l~~e~G~~~~s~~~IA~~aGvs~~~lY~~F~sKe~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (185)
T 2yve_A 2 RTSKKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDITR-DPEDPLER 80 (185)
T ss_dssp CSCHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCS-STTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHH
T ss_conf 77899999999999999839250879999998681923184534899999999999999999999999873-89999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0575 90 LRWLLDVG 97 (216)
Q Consensus 90 l~~~~~~~ 97 (216)
+..++...
T Consensus 81 l~~~~~~~ 88 (185)
T 2yve_A 81 LRAVVVTL 88 (185)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 93
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=99.67 E-value=1.9e-14 Score=129.93 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
+..+|++|++||.+||.++||+++||++||++||||+||||+||+||++|+.+++++..+.+... . ....+..+
T Consensus 11 ~~~tk~~Il~Aa~~L~~e~G~~~~Tv~~Ia~~agvs~~t~Y~yF~sKe~Ll~~~~~~~~~~~~~~---~--~~~~~~~~- 84 (195)
T 2iu5_A 11 SIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFENDFAELIND---N--SDYYGWQN- 84 (195)
T ss_dssp TSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHHHHHHHHHTS---S--CCSSCHHH-
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---C--CCCCCHHH-
T ss_conf 79999999999999998769740679999998793876676874999999999999999999985---2--26046898-
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf 99999999999870808999999998616404899999999999999999999998648899-99998899999999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLV-PDLDADTAAFVLNVVFT 168 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 168 (216)
.......+...++.+...... ..... ... ........+...+......+... ++.+....+..+.+.+.
T Consensus 85 ---~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T 2iu5_A 85 ---ELLLLLRYLDENQIFYQKIFV---IDKNF-EHF---FLIQWENLLDKVIFDQEKKSDYHWSDLEKSFICRYNAAAIC 154 (195)
T ss_dssp ---HHHHHHHHHHHTHHHHHHHHH---HCTTH-HHH---HHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH---CCCHH-HHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf ---767899999998999999986---66338-999---99999999999999999865888882249999999999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999996338
Q T0575 169 ELGNHLIERFA 179 (216)
Q Consensus 169 ~~~~~~~~~~~ 179 (216)
++...|+....
T Consensus 155 ~~~~~~~~~~~ 165 (195)
T 2iu5_A 155 AITRESIIRGN 165 (195)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
T ss_conf 99999988698
No 94
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=99.67 E-value=3.9e-15 Score=135.25 Aligned_cols=96 Identities=11% Similarity=0.180 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 88999999999999874910354799999847785455402688889999999999999999998752155664689999
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLR 91 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (216)
.+|++|++||.++|.++||+++||++||+++|||++|||+||+||++|+.++++..+..+ ... .....++.+.+.
T Consensus 6 lTR~~Il~AA~~lf~~~G~~~~T~~~IA~~aGvs~~tlY~~F~~K~~L~~av~~~~~~~~----~~~-~~~~~~~~~~~~ 80 (234)
T 2opt_A 6 LTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVFDIVLTEV----EVP-EPEPGRWAEQVK 80 (234)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHGGGC----CCC-CCCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH----HHH-CCCCCCHHHHHH
T ss_conf 429999999999999719441689999999785877999987998999999999999999----873-344699899999
Q ss_pred HHHHHHHHHHHHCHHHHHHHH
Q ss_conf 999999999870808999999
Q T0575 92 WLLDVGIQFQFHNPRLAQIAY 112 (216)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ 112 (216)
..+..+......+|.....+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~ 101 (234)
T 2opt_A 81 EMCRSLRRMFLAHRDLARIAI 101 (234)
T ss_dssp HHHHHHHHHHHHSTTHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999998924999986
No 95
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=99.66 E-value=6.1e-15 Score=133.71 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
+.++|++|++||.++|.++||+++||++||+++|||+++||+||+||++|+.++++...+.+. ........++.+.
T Consensus 17 ~~~tR~~Il~AA~~lf~~~G~~~~S~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~----~~~~~~~~~~~~~ 92 (243)
T 2g7l_A 17 PALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDALLGEVD----LTGAGAEEDWREQ 92 (243)
T ss_dssp CCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHHHTTSSC----SSCC---CCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHC----CCCCCCCCCHHHH
T ss_conf 264999999999999998093307899999997919888988779889999999986677651----4545766676999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 999999999998708089999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAYK 113 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~ 113 (216)
+..++..+.+....+|....++..
T Consensus 93 l~~~~~~~~~~~~~~p~~~~~~~~ 116 (243)
T 2g7l_A 93 LRAVLTSYTLVLFAHPQLARSALV 116 (243)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 999999999999989529999975
No 96
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=99.65 E-value=8.5e-15 Score=132.58 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 89999999999998749103547999998477854554026888899999999999999999987521556646899999
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLRW 92 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (216)
+|++|+++|.++|.++||+++||++||+++|||++|||+||+||++|+.+++.+...++.+ ...+....++.+.+..
T Consensus 4 tR~~Il~AA~~lf~~~G~~~~sv~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 80 (207)
T 2vke_A 4 NRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHD---YSLPAAGESWQSFLRN 80 (207)
T ss_dssp SHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHCC---CCSCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHH
T ss_conf 6999999999999973935278999999979198799888898899999999999987653---2036534564899999
Q ss_pred HHHHHHHHHHHCHHHHHHHHH
Q ss_conf 999999998708089999999
Q T0575 93 LLDVGIQFQFHNPRLAQIAYK 113 (216)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~ 113 (216)
+...+..+...+|........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~ 101 (207)
T 2vke_A 81 NAMSFRRALLRYRDGAKVHLG 101 (207)
T ss_dssp HHHHHHHHHHTSTTHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHH
T ss_conf 999999999989329999864
No 97
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=99.64 E-value=4.2e-15 Score=134.93 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 89999999999998749103547999998477854554026888899999999999999999987521556646899999
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLRW 92 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (216)
+|++|++||.++|.++||+++||++||+++|||+++||+||+||++|+.+++++..+.+.... ......++.+.+..
T Consensus 3 ~R~~Il~AA~~l~~~~G~~~~T~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 79 (209)
T 3bqy_A 3 DRARTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAEHMVDGVADAA---GATGDGDWSERTAR 79 (209)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHTTTGGGGG---CSTTSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHH
T ss_conf 799999999999997494527799999997929879999879989899999998888887410---25657898999999
Q ss_pred HHHHHHHHHHHCHHHHHHHHH
Q ss_conf 999999998708089999999
Q T0575 93 LLDVGIQFQFHNPRLAQIAYK 113 (216)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~ 113 (216)
++..+..+...+|....++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ 100 (209)
T 3bqy_A 80 LARALRAALLAHRDGARVFAG 100 (209)
T ss_dssp HHHHHHHHHHTSTTHHHHHHT
T ss_pred HHHHHHHHHHHCHHHHHHHHH
T ss_conf 999999999988249999853
No 98
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=99.64 E-value=6.6e-15 Score=133.44 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 88899999999999987491035479999984778545540268888999999999999999999875215566468999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
+.+|++||+||.++|.++||+++||++||+++|||+++||+||+||++|+.++++.....+.. .. ....++.+.+
T Consensus 28 ~~tre~Il~AA~~l~~e~G~~~~T~~~IA~~aGVs~~tlY~hF~sKe~Ll~av~~~~~~~~~~----~~-~~~~~~~~~l 102 (241)
T 2hxi_A 28 RWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAVADRILLSAMD----GY-RPEGDWKQRL 102 (241)
T ss_dssp CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHHHHHHHHHHHHT----TC-CCCSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH----CC-CCCCCHHHHH
T ss_conf 007999999999999982924066999999979099899998699999999999999988653----03-5679989999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 999999999987080899999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAYKA 114 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ 114 (216)
..+...+......+|....++...
T Consensus 103 ~~~~~~~~~~~~~~p~~~~l~~~~ 126 (241)
T 2hxi_A 103 TAVALRLRESFGQQPQLAAVWGRH 126 (241)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHC
T ss_conf 999999999999892499999763
No 99
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1
Probab=99.63 E-value=1.1e-14 Score=131.67 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 8899999999999987-491035479999984778545540268888999999999999999999875215566468999
Q T0575 12 EKRSRLIDVLLDEFAQ-NDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYL 90 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 90 (216)
.+|++|++||.++|.+ +||+++||++||+++|||+++||+||+||++|+.++++...+.+. ......++.+.+
T Consensus 5 ltr~~Il~AA~~lf~e~~G~~~~T~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~------~~~~~~~~~~~~ 78 (220)
T 1z0x_A 5 LSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQ------EPALCGEWYSDL 78 (220)
T ss_dssp CSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCC------CCCCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHC------CCCCCCCHHHHH
T ss_conf 45999999999999881894205799999997968989999969899999999999986633------675448989999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 9999999999870808999999
Q T0575 91 RWLLDVGIQFQFHNPRLAQIAY 112 (216)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~ 112 (216)
......+.++...||....++.
T Consensus 79 ~~~~~~~~~~~~~~p~~~~l~~ 100 (220)
T 1z0x_A 79 LAFMENYYDLYQQFPCAVAIEI 100 (220)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHHH
T ss_conf 9999999999987935999997
No 100
>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=99.63 E-value=1.6e-14 Score=130.50 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.+++++..+.+...+...... .++...
T Consensus 5 ~~~tr~~il~aA~~l~~~~G~~~~ti~~IA~~aGvs~~siy~~F~~K~~L~~a~~~~~~~~~~~~~~~~~~~--~~~~~~ 82 (180)
T 2fd5_A 5 KTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPG--LSGKER 82 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHHHHHHHTSCTT--SCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHH
T ss_conf 999999999999999987095517799999986889424878768999999999999999999999976338--983148
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0575 90 LRWLLDVG 97 (216)
Q Consensus 90 l~~~~~~~ 97 (216)
.......+
T Consensus 83 ~~~~~~~~ 90 (180)
T 2fd5_A 83 RALAAAFY 90 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 101
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=99.62 E-value=7.9e-15 Score=132.84 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 87888999999999999874910354799999847785455402688889999999999999999998752155664689
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFA 88 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
.++++|++|+++|.++|.++||+++||++||++||||+++||+||+||++|+.++++...... .. ..... .+
T Consensus 36 ~~~~tR~~Il~aA~~l~~~~G~~~~T~~~IA~~aGVs~~t~Y~~F~sK~~L~~a~~~~~~~~~----~~-~~~~~---~~ 107 (214)
T 2guh_A 36 TAEQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDFRAAAE----IV-FSGPL---DG 107 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCCHHHHH----HH-TCSCS---TT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH----HH-CCCCC---HH
T ss_conf 999999999999999999849340679999999494986998882889999999999998887----52-15640---14
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999987080899999999861640489999999999999999999999864889999998899999999999
Q T0575 89 YLRWLLDVGIQFQFHNPRLAQIAYKALYDDVPLPAETMQVIRHGSFAYFKQLVEQGIADGSLVPDLDADTAAFVLNVVFT 168 (216)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 168 (216)
....++..+......++.....+........+.... ........+...+..... .......+..+...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~l~ 177 (214)
T 2guh_A 108 LGERMVSMFARPLEPYKPLSLNILFMSGPSEESSRK----LRANYSAQMIDALAERLP------GRDARLRAELVMSMLT 177 (214)
T ss_dssp HHHHHHHHHTSCCCTTCSHHHHHHHTTCTTCHHHHH----HHHHHHHHTHHHHHHHCC------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHH
T ss_conf 899999999998854315899999971668668999----999999999999998737------7653458999999999
Q ss_pred HHH
Q ss_conf 999
Q T0575 169 ELG 171 (216)
Q Consensus 169 ~~~ 171 (216)
++.
T Consensus 178 g~~ 180 (214)
T 2guh_A 178 GLA 180 (214)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 102
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=99.60 E-value=5.5e-15 Score=134.05 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 78889999999999998749103547999998477854554026888899999999999999999987521556646899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAY 89 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
.+-+|++|+++|.++|.++||+++||++||+++|||++|||+||+||++|+.++++...+.+... ..+....++.+.
T Consensus 2 a~~tR~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~---~~~~~~~~~~~~ 78 (207)
T 2vpr_A 2 AKLDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKNKRALLDALAETILQKHHHH---VLPLPNETWQDF 78 (207)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCCSHHHHHHHHHHHHHHHHCCC---CSCCTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCHHHH
T ss_conf 72379999999999999719552889999999686877899988988999999999999987764---145435999999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 99999999999870808999999
Q T0575 90 LRWLLDVGIQFQFHNPRLAQIAY 112 (216)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~ 112 (216)
+..++..+......+|....+..
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~ 101 (207)
T 2vpr_A 79 LRNNAKSFRQALLMYRDGGKIHA 101 (207)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHC
T ss_conf 99999999999998838999962
No 103
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=99.59 E-value=4.5e-14 Score=127.01 Aligned_cols=103 Identities=7% Similarity=0.030 Sum_probs=83.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98886678878889999999999998749103547999998477854554026888899999999999999999987521
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPP 80 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 80 (216)
|++... +..+|++|++||.++|.++| ++||++||+++|||+++|||||+||++|+.++++...+.+. .. .
T Consensus 3 m~R~~~---~~~tR~~Il~AA~~lf~e~G--~~t~~~IA~~aGvs~~tlY~yF~sKe~L~~av~~~~~~~~~----~~-~ 72 (213)
T 2g7g_A 3 MGRPRV---ARLDRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRVVREID----GS-A 72 (213)
T ss_dssp -----------CCHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHHHTTCC----CG-G
T ss_pred CCCCCC---CCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH----HH-C
T ss_conf 999998---40129999999999999829--86299999996868216999887989999999999999998----75-0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 556646899999999999998708089999999
Q T0575 81 ASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYK 113 (216)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (216)
....++.+.+...+..+......+|....++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 105 (213)
T 2g7g_A 73 FERLPWDEAFSEWARSYRAAFSRHPTAIRLLAT 105 (213)
T ss_dssp GGTSCHHHHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 126887789999999999999988529999976
No 104
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=99.51 E-value=7.5e-14 Score=125.29 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 988866788788899999999999987491035479999984778545540268888999999999999999
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQKT 72 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~ 72 (216)
||+.+.. .++++|++|+++|.++|.++||+++||++||+++|||+|+||+||+||++|+.+++++..+.+.
T Consensus 4 Mpr~~~~-~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~lY~yF~sK~~Ll~a~~~~~~~~~~ 74 (156)
T 3ljl_A 4 MPKRSKE-DTEITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALDGRIFKMFI 74 (156)
T ss_dssp ----CCS-HHHHHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHTTHHHHHHG
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999853-7999999999999999987190207799999986888608988884999999999999999999
No 105
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17
Probab=96.05 E-value=0.0064 Score=40.69 Aligned_cols=60 Identities=8% Similarity=0.198 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8889999999999998749103547999998477854554026888899999999999999
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQK 71 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~ 71 (216)
+++|...+-++-++...++++.-|+.+||++.|||+.|+|+. ++++.=|.+......+++
T Consensus 27 qqr~AA~llv~nEi~~~~~~~kkT~~eiAeEvGisr~tLy~W-ktqnk~Fi~Y~n~lAe~~ 86 (155)
T 2ao9_A 27 KQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEW-RTKNQDFIAFKSEVADSF 86 (155)
T ss_dssp HHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHH-HHCCHHHHHHHHHHHHHH
T ss_conf 999999999988760367566757999999957469999988-604466999999999999
No 106
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=95.70 E-value=0.0055 Score=41.18 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999987491035479999984778545540268888
Q T0575 18 IDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 18 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
++.|.+++. .| .|+.+||+..|||+.|||+||+..+
T Consensus 11 ~~~a~~l~~-~G---~~~~~IA~~~gVSr~TlYrylpa~~ 46 (52)
T 1jko_C 11 QEQISRLLE-KG---HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHHHH-TT---CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHH-CC---CCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 999999998-78---9899999997979999999855125
No 107
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=93.93 E-value=0.042 Score=34.35 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=36.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 98886678878889999999999998749103547999998477854554026888
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
||+.. .++.+.|.+|+... ..| .|..+||+..|+|+.|||+++..-
T Consensus 1 M~k~k--~lt~~~R~~I~~l~-----~~G---~s~~~IAk~lg~s~~tV~r~lk~~ 46 (141)
T 1u78_A 1 MPRGS--ALSDTERAQLDVMK-----LLN---VSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp -CCSC--CCCHHHHHHHHHHH-----HTT---CCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CCCCC--CCCHHHHHHHHHHH-----HCC---CCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98988--79999999999999-----979---999999999895899999999970
No 108
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=93.45 E-value=0.031 Score=35.34 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 354799999847785455402688889999999
Q T0575 32 SVSINRITERAGIAKGSFYQYFADKKDCYLYLI 64 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~ 64 (216)
++|++|||++||||++|+.+.+.+|..+=.+.-
T Consensus 2 ~vTikdIA~~aGVS~~TVSr~Ln~~~~Vs~~tr 34 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTR 34 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 737999999989699999999779599999999
No 109
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=93.26 E-value=0.076 Score=32.37 Aligned_cols=44 Identities=25% Similarity=0.520 Sum_probs=31.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 98886678878889999999999998749103547999998477854554026
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
||+++| |.|-|.+++. +..+. ++.|+.+||++.|||..|||+.-
T Consensus 1 Mprr~Y---s~EfK~~aV~----l~~~~--~G~s~~~vA~~lGIs~~tl~~W~ 44 (97)
T 2jn6_A 1 MPTKTY---SEEFKRDAVA----LYENS--DGASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp CCCCCC---CHHHHHHHHH----HHTTG--GGSCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCC---CHHHHHHHHH----HHHHC--CCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 936989---9999999999----99983--99859999999799935012999
No 110
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6}
Probab=91.54 E-value=0.27 Score=28.13 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=39.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98886678878889999999999998749103547999998477-854554026888899999999
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGI-AKGSFYQYFADKKDCYLYLIQ 65 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agv-s~~tiY~~F~sKe~L~~~~~~ 65 (216)
|.+++..+.|..-...+.+...+.+. .+.|+++||+..|| |..|||++-...+++...+..
T Consensus 4 ma~~~k~GRptk~t~e~~e~I~~~i~----~G~sl~~i~~~~gvps~sTl~rWl~~~~ef~e~y~~ 65 (143)
T 3hef_A 4 MATEPKAGRPSDYMPEVADDICSLLS----SGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAK 65 (143)
T ss_dssp ---------CCSCCHHHHHHHHHHHH----TTCCHHHHHTSTTCCCHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH----CCCCHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHH
T ss_conf 66899999997689999999999998----798799998727999689999999817899999999
No 111
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=91.51 E-value=0.16 Score=29.94 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC-CHHHHHCCCCCH
Q ss_conf 889999999999998749103547999998477-854554026888
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGI-AKGSFYQYFADK 56 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agv-s~~tiY~~F~sK 56 (216)
+|+++|++.-.+...++|+. =|+++||+..|+ |++++++|....
T Consensus 6 ~rq~~il~~I~~~~~~~g~~-PS~~EIa~~~GikS~stv~~~l~~L 50 (202)
T 1jhf_A 6 ARQQEVFDLIRDHISQTGMP-PTRAEIAQRLGFRSPNAAEEHLKAL 50 (202)
T ss_dssp HHHHHHHHHHHHHHHHHSSC-CCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999999999982989-7699999982999737899987513
No 112
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=91.41 E-value=0.028 Score=35.75 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHHH
Q ss_conf 035479999984778545540268888999
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDCY 60 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L~ 60 (216)
..+|+.|||++||||++|+-+.+.++..+=
T Consensus 4 ~~~Ti~DIA~~aGVS~~TVSr~Ln~~~~vs 33 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVK 33 (332)
T ss_dssp ------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 987799999998969999999968959999
No 113
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=90.92 E-value=0.15 Score=30.08 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 87888999999999999874910354799999847785455402688
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
+.+||+.+|++. +.+.. ..+|..++|+..|||+.|+|+....
T Consensus 18 ~k~eR~~~Il~~----L~~~~-~~vt~~eLa~~l~VS~~TIrrDl~~ 59 (187)
T 1j5y_A 18 VRQERLKSIVRI----LERSK-EPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHHH----HHHCS-SCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 099999999999----99869-9776999999979799999999999
No 114
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=90.66 E-value=0.036 Score=34.86 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHHH
Q ss_conf 035479999984778545540268888999
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDCY 60 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L~ 60 (216)
.++|++|||++||||++|+-+.+.++..+=
T Consensus 2 kk~Ti~dIA~~aGVS~~TVSraLn~~~~Vs 31 (349)
T 1jye_A 2 KPVTLYDVAEYAGVSYQTVSRVVNQASHVS 31 (349)
T ss_dssp ------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 977899999998859999999967959999
No 115
>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri}
Probab=90.64 E-value=0.42 Score=26.63 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=40.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 98886678878889999999999998749103547999998477854554026
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
|.+.+.. ++|-|+..+.-..+--.++|-.+.|+.+||...|||..|+|+..
T Consensus 1 M~k~~rY--~~EFK~~AV~lv~e~~~~~~s~g~~~~~VA~~LGI~~~tL~~Wv 51 (108)
T 2rn7_A 1 MTKNTRF--SPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp CCSSCCC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9899999--99999999999998543456565559999988299999999999
No 116
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=90.23 E-value=0.041 Score=34.40 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 03547999998477854554026888899
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
..+||.|||++||||++|+-+.+.++..+
T Consensus 2 ~~~Ti~DIA~~aGVS~~TVSr~Ln~~~~V 30 (338)
T 3dbi_A 2 SLTTMLEVAKRAGVSKATVSRVLSGNGYV 30 (338)
T ss_dssp -----------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 98889999999898899999996897999
No 117
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=90.00 E-value=0.11 Score=31.00 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 03547999998477854554026888899
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
..+|++|||++||||++|+-+.+.+++.+
T Consensus 8 ~~~Tl~diA~~agVS~~TVSr~Ln~~~~v 36 (366)
T 3h5t_A 8 QYGTLASIAAKLGISRTTVSNAYNRPEQL 36 (366)
T ss_dssp CTTHHHHHHHHHTSCHHHHHHHHHCGGGS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 97629999999884999999985898999
No 118
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=89.99 E-value=0.044 Score=34.16 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 03547999998477854554026888899
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
.++||+|||+.||||++|+-+.+.++..+
T Consensus 5 ~k~Ti~dIA~~aGVS~~TVSrvLn~~~~V 33 (333)
T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYV 33 (333)
T ss_dssp -----------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 99859999999897999999997896999
No 119
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=89.98 E-value=0.087 Score=31.89 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 54799999847785455402688889
Q T0575 33 VSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
+||.|||+.+|||.+|+-+.+.++.+
T Consensus 1 vTi~dIA~~aGVS~sTVSrvLn~~~~ 26 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAK 26 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 98999999989399999999779898
No 120
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=89.98 E-value=0.099 Score=31.46 Aligned_cols=28 Identities=11% Similarity=0.399 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 0354799999847785455402688889
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
..+|++|||++||||++|+-+.+.++..
T Consensus 9 k~vTikdIA~~aGVS~~TVSraLn~~~~ 36 (344)
T 3kjx_A 9 RPLTLRDVSEASGVSEMTVSRVLRNRGD 36 (344)
T ss_dssp -CCCHHHHHHHHCCCSHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 9976999999989599999999789799
No 121
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=89.62 E-value=0.049 Score=33.80 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 3547999998477854554026888899
Q T0575 32 SVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
+.|++|||++||||++|+-+.+.++..+
T Consensus 8 r~Ti~dIA~~aGVS~~TVSr~Ln~~~~V 35 (348)
T 3bil_A 8 RPTLKDVARQAGVSIATASRALADNPAV 35 (348)
T ss_dssp ----------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 9739999999885999999997897999
No 122
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=89.54 E-value=0.051 Score=33.72 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCHHHHH
Q ss_conf 35479999984778545540268888999
Q T0575 32 SVSINRITERAGIAKGSFYQYFADKKDCY 60 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sKe~L~ 60 (216)
++|++|||+.||||++|+-+.+.++..+=
T Consensus 4 ~vTikdIA~~aGVS~sTVSr~Ln~~~~Vs 32 (339)
T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLNQPQQVS 32 (339)
T ss_dssp -----------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 44599999998959999999958989999
No 123
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=89.48 E-value=0.095 Score=31.61 Aligned_cols=25 Identities=12% Similarity=0.341 Sum_probs=19.8
Q ss_pred CCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 5479999984778545540268888
Q T0575 33 VSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.||+|||++||||++|+-+.+.++.
T Consensus 1 aTi~dIA~~aGVS~~TVSrvLn~~~ 25 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTR 25 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 9689999998959999999968979
No 124
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=87.60 E-value=1.2 Score=23.03 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 999999999874910354799999847785455402688
Q T0575 17 LIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 17 Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
+.+.+.+.+.++--+..|+.+||+.+|+|+.++.+.|+.
T Consensus 8 ~~~rv~~~I~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999867689999999999999299999999998
No 125
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=87.36 E-value=0.57 Score=25.59 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8788899999999999987491035479999984778545540268
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+|.+.|++|++.+ +. +.+.++||++.+||+++++.-..
T Consensus 26 Ls~~lR~rIV~l~-----~~---G~s~r~iArr~~VS~~~V~kil~ 63 (159)
T 2k27_A 26 LPEVVRQRIVDLA-----HQ---GVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp SCHHHHHHHHHHH-----HH---TCCHHHHHHHHTCCSHHHHHHHC
T ss_pred CCHHHHHHHHHHH-----HC---CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9899999999999-----86---99999999998858889999999
No 126
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=86.93 E-value=0.094 Score=31.65 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 49103547999998477854554026888899
Q T0575 28 NDYDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 28 ~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
-|=..+|++|||++||||++|+-+...++..+
T Consensus 8 p~~k~vTi~diA~~aGVS~sTVSrvLn~~~~V 39 (355)
T 3e3m_A 8 PGHRPVTMRDVAKAAGVSRMTVSRALKKDSPI 39 (355)
T ss_dssp --------------------------------
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 99999769999999886999999996898999
No 127
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=84.62 E-value=1.1 Score=23.41 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 88788899999999999987491035479999984778545540
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
.+|.+.|++|++.+ + .+.+..+||++.+||+++++.
T Consensus 17 pLs~~~R~rIv~l~-----~---~G~s~~~Iar~l~Vs~~~V~k 52 (128)
T 1pdn_C 17 PLPNNIRLKIVEMA-----A---DGIRPCVISRQLRVSHGCVSK 52 (128)
T ss_dssp CCCHHHHHHHHHHH-----H---TTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHH-----H---CCCCHHHHHHHHCCCHHHHHH
T ss_conf 89899999999999-----8---699999999988968999999
No 128
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395}
Probab=83.98 E-value=1.9 Score=21.57 Aligned_cols=40 Identities=3% Similarity=-0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 9999999999874910354799999847785455402688
Q T0575 16 RLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 16 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
.+++.+.+.+.++--+..|++++|+.+|+|+.++.+.|+.
T Consensus 169 ~~~~~i~~~I~~~~~~~~sl~~lA~~~~~S~~~l~r~fK~ 208 (276)
T 3gbg_A 169 DAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES 208 (276)
T ss_dssp CHHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999857389999999999979799999999999
No 129
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=83.91 E-value=0.62 Score=25.27 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999999987491035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
+.|-+.-.++..++|+ |..++|+.+|||+++++++..++.
T Consensus 6 ~~i~~~l~~lr~~~g~---s~~~LA~~~Gvs~~tis~ie~g~~ 45 (78)
T 3b7h_A 6 EFVSEHLMELITQQNL---TINRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 9999999999999499---899999998929999999986998
No 130
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=83.89 E-value=1.2 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 88788899999999999987491035479999984778545540
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
.+|.+-|++|++++. ++.|.++||++.+||+++++.
T Consensus 32 PLs~dlR~rIV~l~~--------~G~s~r~iArrf~VS~s~V~k 67 (149)
T 1k78_A 32 PLPDVVRQRIVELAH--------QGVRPCDISRQLRVSHGCVSK 67 (149)
T ss_dssp CCCHHHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHH
T ss_pred ECCHHHHHHHHHHHH--------CCCCHHHHHHHHCCCHHHHHH
T ss_conf 797999999999999--------699899999987868899999
No 131
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=83.20 E-value=0.53 Score=25.82 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 999999999999874910354799999847785455402688889
Q T0575 14 RSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
++-+-+--..+..++| .|-.++|+..|||++++.+|..++..
T Consensus 7 k~~f~~~Lk~lr~~~g---~tq~elA~~lgvs~~~i~~~E~G~~~ 48 (94)
T 2kpj_A 7 KAIFSENLNSYIAKSE---KTQLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHHHHHTTSS---SCHHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHCC---CCHHHHHHHHHHCCHHHHHHHHCCHH
T ss_conf 9999999999999909---99999999885300567887601000
No 132
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=82.99 E-value=1.6 Score=22.05 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHCCC---------------CCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 88899999999999987491---------------03547999998477854554026
Q T0575 11 EEKRSRLIDVLLDEFAQNDY---------------DSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~---------------~~~t~~~IA~~agvs~~tiY~~F 53 (216)
++.+..|++...+++...|+ ..+|+.+||+..|+|+++++..-
T Consensus 5 ~~~~~~~~e~~~~~~~~~Gl~~~~~~v~~~L~~~~~p~t~~eLa~~l~isks~vs~~l 62 (152)
T 1ku9_A 5 EEAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSL 62 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999999819799999999999976989699999978486651499999
No 133
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=82.99 E-value=0.67 Score=25.02 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 999999999998749103547999998477854554026888
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
...++.+.+.+.++=-+.+|+.++|+.+|+|+.++++.|..-
T Consensus 10 ~~~i~~i~~~i~~n~~~~~sl~~la~~~~~S~~~l~r~Fk~~ 51 (129)
T 1bl0_A 10 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999999834899999999999891999999999999
No 134
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=82.84 E-value=1.8 Score=21.76 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHH
Q ss_conf 887888999999999999874910354799999847785455402688889999
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYL 61 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~ 61 (216)
.++.+-|.+|++- + +.| .+..+||++-||+..|||..-+.++.+..
T Consensus 22 ~~T~e~K~eiv~~----~-e~G---~s~~~vAre~gi~~sTl~~wvK~~~ki~~ 67 (87)
T 2elh_A 22 SLTPRDKIHAIQR----I-HDG---ESKASVARDIGVPESTLRGWCKNEDKLRF 67 (87)
T ss_dssp SCCHHHHHHHHHH----H-HHT---CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----H-HCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 1499999999999----9-979---98999999989788799999997999998
No 135
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=82.81 E-value=0.19 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 547999998477854554026888899
Q T0575 33 VSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
+||+|||++||||++|+-+-..++..+
T Consensus 3 ati~diA~~agVS~~TVsraLn~~~~V 29 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNTGYV 29 (330)
T ss_dssp ---------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 989999999894999999996896999
No 136
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=82.67 E-value=1.5 Score=22.32 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 8899999999999987491035479999984778545540
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
.+.+..|.+-..+-.++| .++..+||+..|||++|+..
T Consensus 4 ~~~EdYL~~I~~l~~~~~--~v~~~~iA~~L~vs~~svt~ 41 (142)
T 1on2_A 4 PSMEMYIEQIYMLIEEKG--YARVSDIAEALAVHPSSVTK 41 (142)
T ss_dssp HHHHHHHHHHHHHHHHHS--SCCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHH
T ss_conf 609999999999996389--97699999996988789999
No 137
>2ezk_A Transposase; DNA-binding protein, transposition, transposable element; NMR {Enterobacteria phage MU} SCOP: a.4.1.2 PDB: 2ezl_A
Probab=82.26 E-value=0.96 Score=23.81 Aligned_cols=44 Identities=2% Similarity=0.069 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 89999999999998749103-5479999984778545540268888
Q T0575 13 KRSRLIDVLLDEFAQNDYDS-VSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.|-.++.+...| .+.|+.. .-+..+|.+.|||.+|+|++|.--+
T Consensus 34 ~rL~~l~~v~~L-~~~G~~~~~A~~~VA~~~~vs~~TL~nW~~~V~ 78 (99)
T 2ezk_A 34 KWLPAVQAADEM-LNQGISTKTAFATVAGHYQVSASTLRDKYYQVQ 78 (99)
T ss_dssp HHHHHHHHHHHH-HHTTCCHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 999999999999-986982899999999996988999999999968
No 138
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=80.57 E-value=1.1 Score=23.27 Aligned_cols=41 Identities=15% Similarity=0.339 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 99999999874910354799999847785455402688889
Q T0575 18 IDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 18 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
+.-+.+.+.++--+.+|+.+||+.+|+|+.++.+.|+..-+
T Consensus 4 v~rv~~~i~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~~~g 44 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRG 44 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99999999874489999999999989199999999999989
No 139
>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=80.26 E-value=1.8 Score=21.77 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 89999999999998749103547999998477854554026888
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
-|..|...-.++..++|+ |-.++|+.+|+|+++++++..+|
T Consensus 15 ~r~~l~~~ir~~R~~~gl---Tq~elA~~~Gis~~~is~iE~G~ 55 (83)
T 2a6c_A 15 MRSQLLIVLQEHLRNSGL---TQFKAAELLGVTQPRVSDLMRGK 55 (83)
T ss_dssp HHHHHHHHHHHHHHTTTC---CHHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCC---CHHHHHHHHHCCHHHHHHHHCCC
T ss_conf 999999999999999699---88999999855763555886242
No 140
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=80.18 E-value=1.6 Score=22.03 Aligned_cols=30 Identities=7% Similarity=0.227 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 910354799999847785455402688889
Q T0575 29 DYDSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 29 G~~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
.-...|+++||+.+|+|+..|.+.|+.--+
T Consensus 90 ~~~~~sl~~lA~~~g~S~~~l~R~Fk~~~G 119 (133)
T 1u8b_A 90 QETPVTLEALADQVAMSPFHLHRLFKATTG 119 (133)
T ss_dssp SSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 369999999954719998999999999989
No 141
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=80.03 E-value=1.3 Score=22.94 Aligned_cols=43 Identities=5% Similarity=0.098 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 99999999987491-03547999998477854554026888899
Q T0575 17 LIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 17 Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
.+..+.+.+.++=. ..+|++++|+.+|+|+.++.+.|...-++
T Consensus 4 ~v~~~~~~I~~~~~~~~~sl~~lA~~~~~s~~~l~r~f~~~~g~ 47 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGI 47 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 99999999997568999799999999892999999999999892
No 142
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=79.72 E-value=0.94 Score=23.89 Aligned_cols=41 Identities=10% Similarity=0.254 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 788899999999999987491035479999984778545540268888
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
...+|.+|+.. +. +| ..|+.+||+..|+|.+++++|-..-+
T Consensus 13 ~~~~R~~Il~~----L~-~~--~~~~~ela~~l~is~~~v~~HL~~L~ 53 (202)
T 2p4w_A 13 GNETRRRILFL----LT-KR--PYFVSELSRELGVGQKAVLEHLRILE 53 (202)
T ss_dssp HSHHHHHHHHH----HH-HS--CEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HH-CC--CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999----98-19--98899999998909989999999999
No 143
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=78.68 E-value=1.2 Score=23.03 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 878889999999999998749103547999998477854554026888
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
+++..|-+|+. ++ .+| .++.+|++..|+|++++.+|..--
T Consensus 28 La~p~Rl~IL~----~L-~~~---~~~~el~~~l~is~stvs~HL~~L 67 (96)
T 1y0u_A 28 VTNPVRRKILR----ML-DKG---RSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp HSCHHHHHHHH----HH-HTT---CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HCCHHHHHHHH----HH-CCC---CHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 38999999999----84-454---178899999893988999999999
No 144
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=78.27 E-value=1.9 Score=21.57 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 887888999999999999874910354799999847785455402688
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
-+++..|-+|+..- .+ | ..|+.+||+..|+|.+++.+|.+-
T Consensus 17 aLadp~R~~Il~~L----~~-~--~~~v~eLa~~l~~s~~~vS~HL~~ 57 (114)
T 2oqg_A 17 ALSDETRWEILTEL----GR-A--DQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp HTTCHHHHHHHHHH----HH-S--CBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHH----HC-C--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 94899999999999----81-9--958999999989199999999999
No 145
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=77.68 E-value=0.92 Score=23.95 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 999999999998749103547999998477854554026888
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
..|++..+.-+.++=-+.+|+.+||+.+|+|+.+|.+.|..-
T Consensus 2 ~~~i~~~~~~i~~~~~~~~~l~~la~~~~~s~~~l~r~f~~~ 43 (292)
T 1d5y_A 2 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDV 43 (292)
T ss_dssp HHHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 689999999999705899999999999893999999999998
No 146
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=77.58 E-value=2.7 Score=20.31 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 999999999987491-0354799999847785455402688889
Q T0575 16 RLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 16 ~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
.+.+...+++.++.- .++|..++|+.+|+|++++.++-.++-.
T Consensus 13 ~~~~rlk~~~~~~r~~~gltq~~LA~~lGis~~~is~~e~g~~~ 56 (236)
T 3bdn_A 13 EDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINA 56 (236)
T ss_dssp HHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 99999999999999884999999999979799999999717650
No 147
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=77.58 E-value=2.8 Score=20.22 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 889999999999998749103547999998477854554026888899
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
+-++.|-+.-.++-.++|+ |..++|+.+|+|+.++++|-.++-..
T Consensus 6 ~~~~~~g~~ir~~R~~~gl---tq~~lA~~~gvs~~~i~~~E~g~~~p 50 (77)
T 2b5a_A 6 EIKRKFGRTLKKIRTQKGV---SQEELADLAGLHRTYISEVERGDRNI 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHHHCC---CHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 9999999999999998099---99999989697999999998599999
No 148
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=77.31 E-value=1.5 Score=22.23 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 9999874910354799999847785455402688
Q T0575 22 LDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 22 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
+++|.+.+ ...|+.+||+..|++++|+|++..+
T Consensus 14 Le~la~~~-~~~~l~eia~~lgl~~st~~RlL~t 46 (249)
T 1mkm_A 14 LDFIVKNP-GDVSVSEIAEKFNMSVSNAYKYMVV 46 (249)
T ss_dssp HHHHHHCS-SCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99997289-9989999999879199999999999
No 149
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=76.82 E-value=1.5 Score=22.25 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8788899999999999987491035479999984778545540268
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+++..|-+|+..- .+. .+.++.+||+..|+|.+++.+|.+
T Consensus 21 L~~p~Rl~Il~~L----~~~--~~~~~~ela~~l~ls~stvS~HL~ 60 (99)
T 3cuo_A 21 MSHPKRLLILCML----SGS--PGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HCSHHHHHHHHHH----TTC--CSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HCCHHHHHHHHHH----HCC--CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 5899999999999----769--994199999998929878999999
No 150
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=76.68 E-value=0.96 Score=23.84 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 78889999999999998749103547999998477854554026888
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
.+.+|.+|+..- . +| ..|+.+||+..|+|++++++|-..-
T Consensus 18 ~~~~R~~Il~~L----~-~~--~~t~~ela~~l~~s~~~v~~hL~~L 57 (192)
T 1uly_A 18 LEDTRRKILKLL----R-NK--EMTISQLSEILGKTPQTIYHHIEKL 57 (192)
T ss_dssp HSHHHHHHHHHH----T-TC--CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH----H-HC--CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999999----8-29--9689999999890999999999999
No 151
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=76.60 E-value=2.5 Score=20.66 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8788899999999999987491035479999984778545540268
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+++..|-+|+..- .+ | ..++.+||+..|+|.+++.+|..
T Consensus 23 L~~p~Rl~Il~~L----~~-~--~~~v~ela~~l~~s~stvS~HL~ 61 (106)
T 1r1u_A 23 LGDYNRIRIMELL----SV-S--EASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp TCSHHHHHHHHHH----HH-C--CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HCCHHHHHHHHHH----HC-C--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 5899999999999----83-9--94699999887658668999999
No 152
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=76.06 E-value=2.2 Score=21.11 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999999999874910354799999847785455402688889999999
Q T0575 14 RSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLI 64 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~ 64 (216)
++.|-+.-..+-..+| .|..++|+.+|||++++.++-.++..+=...+
T Consensus 26 ~~~iG~~Lr~~R~~~g---lsq~~lA~~~gis~~~is~~E~G~~~ps~~~l 73 (117)
T 3f52_A 26 REALGAALRSFRADKG---VTLRELAEASRVSPGYLSELERGRKEVSSELL 73 (117)
T ss_dssp HHHHHHHHHHHHHHHT---CCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999999999999959---89999998860307789999753032769999
No 153
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=75.46 E-value=1.2 Score=23.17 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 103547999998477854554026
Q T0575 30 YDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 30 ~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
+...|+++||+++|||++|+.+..
T Consensus 33 ~~~~si~~lA~~~~vS~aTv~Rf~ 56 (107)
T 3iwf_A 33 VVNMTSQEIANQLETSSTSIIRLS 56 (107)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHCCHHHHHHHHCCCHHHHHHHH
T ss_conf 977649999989698988999999
No 154
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=74.83 E-value=2.2 Score=21.09 Aligned_cols=54 Identities=6% Similarity=0.077 Sum_probs=34.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 98886678878889999999999998749103547999998477854554026888899
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
||+.+.++ ..-...|-..-.++-.++| .|..++|+.+|+|++++.++-.++...
T Consensus 15 ~pr~s~m~--~~l~~~ig~~lk~lR~~~g---lSq~elA~~~gis~~~is~iE~G~~~p 68 (99)
T 3g5g_A 15 VPRGSHME--SFLLSKVSFVIKKIRLEKG---MTQEDLAYKSNLDRTYISGIERNSRNL 68 (99)
T ss_dssp -------C--CHHHHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHTTCSCC
T ss_pred CCCCHHHH--HHHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 99824668--9999999999999999909---999999999895999999998157899
No 155
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=74.04 E-value=2 Score=21.41 Aligned_cols=40 Identities=10% Similarity=0.312 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8788899999999999987491035479999984778545540268
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+++.+|-+|+..-. +.| ..++.+|++..|+|.+++.+|.+
T Consensus 24 L~~p~Rl~Il~~L~----~~~--~~~v~ela~~l~~s~stvS~HL~ 63 (99)
T 2zkz_A 24 MAHPMRLKIVNELY----KHK--ALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp HCSHHHHHHHHHHH----HHS--CEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HCCHHHHHHHHHHH----HCC--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 38999999999996----479--90599999998858768999999
No 156
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=73.59 E-value=2 Score=21.35 Aligned_cols=39 Identities=15% Similarity=0.393 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8788899999999999987491035479999984778545540268
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+++..|-+|+. ++. +| ..++.+||+..|+|++++.+|..
T Consensus 43 Ladp~Rl~IL~----~L~-~~--~~~v~eLa~~l~ls~stvS~HL~ 81 (122)
T 1r1t_A 43 LADPNRLRLLS----LLA-RS--ELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp HCCHHHHHHHH----HHT-TC--CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HCCHHHHHHHH----HHH-CC--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 58999999999----998-19--95699999998919889999999
No 157
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=73.15 E-value=1.5 Score=22.31 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=28.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 9999874910354799999847785455402688
Q T0575 22 LDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 22 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
..+|.-+-+++.|..+||+..|+|+++++.+..-
T Consensus 31 r~v~~l~~~~~ls~~EIA~~lgiS~~~V~~~l~R 64 (113)
T 1xsv_A 31 RNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999982865999999989699999999999
No 158
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=72.74 E-value=0.9 Score=24.03 Aligned_cols=39 Identities=15% Similarity=0.351 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8788899999999999987491035479999984778545540268
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+++..|-+|+..-. + | ..++.+|++..|+|++++.+|.+
T Consensus 18 L~dp~Rl~Il~~L~----~-~--~~~v~ela~~l~is~stvS~HL~ 56 (118)
T 2jsc_A 18 LADPTRCRILVALL----D-G--VCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp HSSHHHHHHHHHHH----T-T--CCSTTTHHHHHSSCHHHHHHHHH
T ss_pred HCCHHHHHHHHHHH----C-C--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 48999999999998----2-9--93899999998919999999999
No 159
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=72.58 E-value=1.2 Score=23.13 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8788899999999999987491035479999984778545540268
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+++.+|.+|+..- .+ | ..|+.+||+..|+|.+++.+|..
T Consensus 15 La~p~R~~Il~~L----~~-~--~~~v~ela~~l~~s~~~vs~HL~ 53 (118)
T 3f6o_A 15 LADPTRRAVLGRL----SR-G--PATVSELAKPFDMALPSFMKHIH 53 (118)
T ss_dssp HTSHHHHHHHHHH----HT-C--CEEHHHHHTTCCSCHHHHHHHHH
T ss_pred HCCHHHHHHHHHH----HH-C--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 5899999999999----80-9--97777779886969999999998
No 160
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=72.30 E-value=1.2 Score=23.07 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 87888999999999999874910354799999847785455402688
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
+++.+|-+|+.. +. +| ..++.+||+..|+|.+|+.+|.+-
T Consensus 20 L~~~~Rl~Il~~----L~-~~--~~~v~ela~~l~is~~tvS~HL~~ 59 (98)
T 3jth_A 20 MANERRLQILCM----LH-NQ--ELSVGELCAKLQLSQSALSQHLAW 59 (98)
T ss_dssp HCSHHHHHHHHH----TT-TS--CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HCCHHHHHHHHH----HH-CC--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 389999999999----98-19--967999999989298899999999
No 161
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=72.23 E-value=3.2 Score=19.78 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 0354799999847785455402688889999999
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDCYLYLI 64 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~ 64 (216)
.++|-.++|+.+|+|++++.+|..++-.+=...+
T Consensus 29 ~gltQ~elA~~lGis~~~is~~E~G~~~~s~~~l 62 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNGINALNAYNA 62 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 2999999998888788579999759999999999
No 162
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=71.85 E-value=1.7 Score=21.89 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHH
Q ss_conf 99999999987491035479999984778545540268888999
Q T0575 17 LIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCY 60 (216)
Q Consensus 17 Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~ 60 (216)
|-+.-.++-.++ +.|..++|+.+|+|+++++++-.++...=
T Consensus 14 ig~~lk~~R~~~---gltq~~lA~~~gis~~~i~~~E~g~~~ps 54 (74)
T 1y7y_A 14 FGQRLRELRTAK---GLSQETLAFLSGLDRSYVGGVERGQRNVS 54 (74)
T ss_dssp HHHHHHHHHHHT---TCCHHHHHHHHTCCHHHHHHHHTTCSCCB
T ss_pred HHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 999999999980---99999999898969999999987998999
No 163
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=71.53 E-value=2.7 Score=20.29 Aligned_cols=38 Identities=5% Similarity=0.137 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 89999999999998749103547999998477854554026888
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
.-.+||. ++.++| .+|.++||++.|+|++|+.+....-
T Consensus 18 ~D~~IL~----~L~~d~--R~s~~eIA~~lglS~~tV~~Ri~rL 55 (171)
T 2ia0_A 18 LDRNILR----LLKKDA--RLTISELSEQLKKPESTIHFRIKKL 55 (171)
T ss_dssp HHHHHHH----HHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999----999848--9999999999890999999999999
No 164
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=71.19 E-value=3.1 Score=19.85 Aligned_cols=28 Identities=4% Similarity=0.100 Sum_probs=22.2
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHCC
Q ss_conf 999874910354799999847785455402
Q T0575 23 DEFAQNDYDSVSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~ 52 (216)
.++.++| ..|+.+||+.+|++++++|..
T Consensus 27 ~~L~~~~--~~t~~eia~~~~~~~~~v~~~ 54 (109)
T 1sfx_A 27 SLLLERG--GMRVSEIARELDLSARFVRDR 54 (109)
T ss_dssp HHHHHHC--CBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHCCC--CCCHHHHHHHHCCCCCHHHHH
T ss_conf 9998048--887999999975670189999
No 165
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=70.99 E-value=2.2 Score=21.01 Aligned_cols=33 Identities=6% Similarity=0.348 Sum_probs=25.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 99998749103547999998477854554026888
Q T0575 22 LDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 22 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
+.++.++| ..|..+||++.|+|.+|+++...--
T Consensus 9 L~~L~~d~--R~s~~eiA~~lglS~~tv~~Ri~rL 41 (162)
T 3i4p_A 9 LRILQEDS--TLAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHTTCS--CSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999858--9999999999891999999999999
No 166
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=70.65 E-value=1.6 Score=22.16 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 3547999998477854554026
Q T0575 32 SVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F 53 (216)
=+++.+|++..|+|++|+|+.-
T Consensus 10 ll~~keV~~~~g~srstiy~~~ 31 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRI 31 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHH
T ss_pred EECHHHHHHHHCCCHHHHHHHH
T ss_conf 1649999999797899986673
No 167
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=70.59 E-value=2.1 Score=21.20 Aligned_cols=33 Identities=9% Similarity=0.255 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 99998749103547999998477854554026888
Q T0575 22 LDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 22 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
++++.++| .+|..+||++.|+|++|++++.+.-
T Consensus 11 l~~L~~n~--R~s~~eia~~~g~s~~tv~~Ri~rL 43 (144)
T 2cfx_A 11 IEELKKDS--RLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp HHHHHHCS--CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999848--9999999999885888999999987
No 168
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=70.51 E-value=3.5 Score=19.51 Aligned_cols=28 Identities=4% Similarity=0.122 Sum_probs=22.6
Q ss_pred HHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 874910354799999847785455402688
Q T0575 26 AQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 26 ~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
..+| .+|+.+||+..|+++++++++-..
T Consensus 32 ~~~~--~lt~~ela~~l~i~~~tv~~~l~~ 59 (109)
T 2d1h_A 32 EIEK--PITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HHCS--CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HCCC--CCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8496--989999999978872349999999
No 169
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=70.16 E-value=1.9 Score=21.56 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=26.1
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHCCC-CCHHHH
Q ss_conf 998749103547999998477854554026-888899
Q T0575 24 EFAQNDYDSVSINRITERAGIAKGSFYQYF-ADKKDC 59 (216)
Q Consensus 24 lf~~~G~~~~t~~~IA~~agvs~~tiY~~F-~sKe~L 59 (216)
+|.-.=|++.|..+||+..|+|.++++.+. ..+..|
T Consensus 30 vi~L~~~~~ls~~EIA~~lgis~~~V~~~l~Ra~~~L 66 (113)
T 1s7o_A 30 YIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp HHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999731299999998979999999999999999
No 170
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=69.81 E-value=3.5 Score=19.52 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 03547999998477854554026888899999999999999
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIEQK 71 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~ 71 (216)
.+.|..++|+.+|||++++.+|-.++-..=...+......+
T Consensus 13 ~glsq~elA~~~gis~~tis~~E~G~~~ps~~~l~~la~~l 53 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKF 53 (158)
T ss_dssp -----------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 39999999999797999999998798789999999999995
No 171
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=69.48 E-value=1.1 Score=23.49 Aligned_cols=40 Identities=5% Similarity=0.222 Sum_probs=28.7
Q ss_pred HHHHHHH---HHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 9999999---9874910354799999847785455402688889
Q T0575 18 IDVLLDE---FAQNDYDSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 18 l~aA~~l---f~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
++-|+.+ |.+.+ ...|+.+||++.|++++|+|++-.+-.+
T Consensus 20 l~Ral~IL~~~~~~~-~~l~l~eia~~lgl~kst~~RlL~tL~~ 62 (265)
T 2ia2_A 20 LARGLAVIRCFDHRN-QRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp HHHHHHHHHTCCSSC-SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999997379-9979999999979499999999999997
No 172
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=69.40 E-value=2.4 Score=20.82 Aligned_cols=40 Identities=8% Similarity=0.253 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 8899999999999987491035479999984778545540268888
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
+.=.+||+ ++.++| .+|..+||++.|+|.+|++++...-+
T Consensus 10 ~~D~~Il~----~L~~d~--R~s~~eia~~~gls~~tv~~Ri~~L~ 49 (162)
T 2p5v_A 10 KTDIKILQ----VLQENG--RLTNVELSERVALSPSPCLRRLKQLE 49 (162)
T ss_dssp HHHHHHHH----HHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999----999838--99999999998919999999999998
No 173
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=69.35 E-value=2.4 Score=20.80 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 88899999999999987491035479999984778545540268888
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
++.-.+||. ++.++| ..|+.+||+++|+|.+|+++....-+
T Consensus 6 D~~D~~Il~----~L~~d~--R~s~~~ia~~lgls~~tv~~Ri~~L~ 46 (150)
T 2w25_A 6 DDIDRILVR----ELAADG--RATLSELATRAGLSVSAVQSRVRRLE 46 (150)
T ss_dssp CHHHHHHHH----HHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 299999999----999848--99999999998909999999999984
No 174
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=69.23 E-value=4.9 Score=18.35 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 99999999999987491035479999984778545540
Q T0575 14 RSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
.+..|.+-..+-.++|. ++..+||+..|||++++..
T Consensus 38 ~EdYLe~Iy~L~~~~~~--vr~~dIA~~L~vs~~sV~~ 73 (155)
T 2h09_A 38 IDDYVELISDLIREVGE--ARQVDMAARLGVSQPTVAK 73 (155)
T ss_dssp HHHHHHHHHHHHHHHSC--CCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHHHHCCCHHHHHH
T ss_conf 99999999999962897--6099999996988779999
No 175
>2v4j_C Sulfite reductase, dissimilatory-type subunit gamma; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.203.1.1
Probab=69.02 E-value=4.9 Score=18.31 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 88999999999999874910354799999847785455402688889
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
+.--.||+.+.+-+.++|.. -+++.+++..|...+.+|.-|++.-.
T Consensus 44 ~~Hw~vI~~lR~~y~~~~~~-P~~R~l~k~~~~~~~~L~~LFp~~Pa 89 (105)
T 2v4j_C 44 PDHQKIIDFLQDYYKKNGIA-PMVRILSKNTGFKLKEVYELFPSGPG 89 (105)
T ss_dssp HHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHCCCHHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCCHH
T ss_conf 99999999999999995899-71999999855217799998699999
No 176
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=68.97 E-value=3.4 Score=19.59 Aligned_cols=38 Identities=13% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 88999999999999874910354799999847785455402688
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
+.-.+|| +++.++| .+|..+||+..|+|.+|+.+...-
T Consensus 7 ~~D~~IL----~~L~~n~--R~s~~~iA~~lg~S~~tv~~Ri~~ 44 (151)
T 2cyy_A 7 EIDKKII----KILQNDG--KAPLREISKITGLAESTIHERIRK 44 (151)
T ss_dssp HHHHHHH----HHHHHCT--TCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999----9999748--999999999989298999999999
No 177
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=68.88 E-value=2 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=23.1
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 9874910354799999847785455402688
Q T0575 25 FAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 25 f~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
-.++| .|..++|+.+|||++++++|-.+
T Consensus 10 R~~~g---lsq~eLa~~~gis~~~is~~E~g 37 (111)
T 1b0n_A 10 RKEKG---YSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHTT---CCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHCC---CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99849---99999987869899999999879
No 178
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=68.79 E-value=2.7 Score=20.41 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 3547999998477854554026
Q T0575 32 SVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F 53 (216)
..++.+||+..|+|.+++.+|.
T Consensus 56 ~~~v~ela~~l~is~~~vS~HL 77 (122)
T 1u2w_A 56 ELCVCDIANILGVTIANASHHL 77 (122)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9069999988845700799999
No 179
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=68.54 E-value=1.8 Score=21.76 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=24.8
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9987491035479999984778545540268888
Q T0575 24 EFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 24 lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
+-.+.| .|..++|+.+|+|+++++++..++.
T Consensus 9 ~r~~~~---lsq~ela~~~gvs~~ti~~~e~g~~ 39 (69)
T 1r69_A 9 KRIQLG---LNQAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHTT---CCHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHCC---CCHHHHHHHCCCCHHHHHHHHCCCC
T ss_conf 999949---9999997850989999999987999
No 180
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=68.50 E-value=2.8 Score=20.29 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 99998749103547999998477854554026888
Q T0575 22 LDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 22 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
++++.++| .+|..+||++.|+|.+|+.+..+--
T Consensus 9 l~~L~~d~--r~s~~~ia~~~g~s~~tv~~Ri~rL 41 (150)
T 2pn6_A 9 LKILQYNA--KYSLDEIAREIRIPKATLSYRIKKL 41 (150)
T ss_dssp HHHHTTCT--TSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999838--9999999999891999999999999
No 181
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=68.49 E-value=1.5 Score=22.35 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 035479999984778545540268888999999999
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQL 66 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~ 66 (216)
.+.|.+++|+.+|||++++.+|-.++...=...+..
T Consensus 24 ~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~~l~~ 59 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFK 59 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHH
T ss_pred CCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 599999997863998999999987999999999999
No 182
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=68.22 E-value=2.1 Score=21.19 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHCCCHHHHHCC
Q ss_conf 354799999847785455402
Q T0575 32 SVSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~ 52 (216)
..||.++|+.+|||..|+.+|
T Consensus 2 ~mtI~evA~~~Gvs~~tLRyY 22 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYY 22 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 513999999989599999999
No 183
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=68.10 E-value=3.6 Score=19.34 Aligned_cols=48 Identities=15% Similarity=0.410 Sum_probs=31.2
Q ss_pred CCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 888667887-888999999999999874910354799999847785455402688
Q T0575 2 PTETFFNLP-EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 2 p~~~~~~~~-ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
|+-..+..+ ++.=.+||. ++.++| .+|+.+||+++|+|.+|+.+...-
T Consensus 16 p~~~~m~~~LD~~D~~IL~----~L~~d~--R~s~~eiA~~lglS~~tV~~Ri~r 64 (171)
T 2e1c_A 16 PRGSHMRVPLDEIDKKIIK----ILQNDG--KAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp --------CCCHHHHHHHH----HHHHCT--TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHH----HHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7887766884799999999----999838--999999999989099999999999
No 184
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=67.97 E-value=4.1 Score=18.92 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 3547999998477854554026888
Q T0575 32 SVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
+.|+.++|+++|||++++.+.=.++
T Consensus 27 ~~s~~elA~~~Gvs~~~is~iE~G~ 51 (86)
T 2ofy_A 27 DMSMVTVAFDAGISVETLRKIETGR 51 (86)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 5999999999895999999998699
No 185
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=67.89 E-value=3.7 Score=19.32 Aligned_cols=38 Identities=5% Similarity=0.201 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 88899999999999987491035479999984778545540268
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
++.=.+|++ ++.++| ..|..+||+..|+|.+|+.+...
T Consensus 7 D~~D~~Il~----~L~~d~--R~s~~eia~~~g~s~~tv~~Ri~ 44 (152)
T 2cg4_A 7 DNLDRGILE----ALMGNA--RTAYAELAKQFGVSPETIHVRVE 44 (152)
T ss_dssp CHHHHHHHH----HHHHCT--TSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHH----HHHHCC--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 799999999----999858--99999999998877589999999
No 186
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=67.84 E-value=2.2 Score=20.98 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=27.2
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 999998749103547999998477854554026888899
Q T0575 21 LLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 21 A~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
-.++-.++| .|.+++|+.+|+|++++..+..++...
T Consensus 10 ik~lR~~~g---ltq~~lA~~~gis~~~i~~~e~g~~~p 45 (76)
T 1adr_A 10 IRARRKKLK---IRQAALGKMVGVSNVAISQWERSETEP 45 (76)
T ss_dssp HHHHHHHHT---CCHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred HHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 999999919---999999999894999999999699899
No 187
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=67.82 E-value=2.4 Score=20.73 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=22.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 9998749103547999998477854554026
Q T0575 23 DEFAQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
++|.-+-|++.|.++||+..|+|.++++.+.
T Consensus 44 ~vl~l~~~~~~s~~EIA~~lgis~~~v~~~~ 74 (92)
T 3hug_A 44 AVIQRSYYRGWSTAQIATDLGIAEGTVKSRL 74 (92)
T ss_dssp HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999949999999999896999999999
No 188
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=67.50 E-value=5.3 Score=18.09 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCC
Q ss_conf 99999999999874910354799999847785455402
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~ 52 (216)
..+|..|+ .+.|. .+.+-|+..|||+.|+|+.
T Consensus 43 r~~I~~aL---~~~~G---N~s~AAr~LGIsR~TLyrk 74 (81)
T 1umq_A 43 WEHIQRIY---EMCDR---NVSETARRLNMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHH---HHTTS---CHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHH---HHHHH---HHHHHHHHHCCCHHHHHHH
T ss_conf 99999999---99983---0999999969899999999
No 189
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=66.93 E-value=2 Score=21.31 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHCC-----CCCHHHHHHHHH
Q ss_conf 10354799999847785455402-----688889999999
Q T0575 30 YDSVSINRITERAGIAKGSFYQY-----FADKKDCYLYLI 64 (216)
Q Consensus 30 ~~~~t~~~IA~~agvs~~tiY~~-----F~sKe~L~~~~~ 64 (216)
+...|+.+||+++|||.+|+.+. |.+=.++-.++.
T Consensus 37 v~~~si~~lA~~~~vS~sTI~Rf~kkLG~~Gf~efk~~l~ 76 (111)
T 2o3f_A 37 AIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVA 76 (111)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 6446899999897989889999999947798999999999
No 190
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=66.41 E-value=4.1 Score=18.96 Aligned_cols=31 Identities=10% Similarity=0.272 Sum_probs=24.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 999874910354799999847785455402688
Q T0575 23 DEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
.++.++| ..|..+||++.|+|++++++..+.
T Consensus 11 ~~L~~~~--r~s~~~ia~~~gls~~~v~~Ri~~ 41 (141)
T 1i1g_A 11 EILEKDA--RTPFTEIAKKLGISETAVRKRVKA 41 (141)
T ss_dssp HHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999858--989999999989099999999999
No 191
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=65.89 E-value=5.2 Score=18.18 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 354799999847785455402688889
Q T0575 32 SVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
.+|+.+||+.+|+|+.++++.|..--+
T Consensus 19 ~l~l~~lA~~~~~s~~~l~r~fk~~~g 45 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFG 45 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 989999999989199999999999889
No 192
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A
Probab=65.66 E-value=2.5 Score=20.66 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCHHHHH
Q ss_conf 35479999984778545540268888999
Q T0575 32 SVSINRITERAGIAKGSFYQYFADKKDCY 60 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sKe~L~ 60 (216)
-.|+.++|+.+|||..|+.+| .+.+|+
T Consensus 11 ~~tIGevA~~~gvs~~TLR~Y--E~~GLl 37 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFY--ESKGLI 37 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHH--HHTTSS
T ss_pred CCCHHHHHHHHCCCHHHHHHH--HHCCCC
T ss_conf 626999999988699999999--988899
No 193
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=65.55 E-value=2.1 Score=21.17 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=24.9
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99987491035479999984778545540268888
Q T0575 23 DEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.+..+.| .|..++|+.+|+|++++.++..++.
T Consensus 10 ~~r~~~g---lsq~~lA~~~Gis~~~is~~e~g~~ 41 (71)
T 1zug_A 10 KRRIALK---MTQTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHTT---CCHHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHCC---CCHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 9999849---9999999997158999999987999
No 194
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=65.22 E-value=5.6 Score=17.93 Aligned_cols=38 Identities=11% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHH---HHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 9999999---98749103547999998477854554026888
Q T0575 18 IDVLLDE---FAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 18 l~aA~~l---f~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
++-++.+ |.+.+ ..+|+.+||++.|++++|+|++-.+-
T Consensus 13 l~Ral~ILe~l~~~~-~~~t~~eia~~l~l~~st~~rlL~tL 53 (257)
T 2g7u_A 13 IERGFAVLLAFDAQR-PNPTLAELATEAGLSRPAVRRILLTL 53 (257)
T ss_dssp HHHHHHHHHTCSSSC-SSCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999998579-99899999999792999999999999
No 195
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=65.04 E-value=4.7 Score=18.51 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHH---HCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 9999999998---74910354799999847785455402688
Q T0575 17 LIDVLLDEFA---QNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 17 Il~aA~~lf~---~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
=++-+++++. +.+ ...|+.+||++.|++++|+|++-.+
T Consensus 21 sl~r~l~ILe~l~~~~-~~lsl~eia~~lgl~kst~~RlL~t 61 (260)
T 2o0y_A 21 SVTRVIDLLELFDAAH-PTRSLKELVEGTKLPKTTVVRLVAT 61 (260)
T ss_dssp HHHHHHHHHTTCBTTB-SSBCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999998479-9989999999979198999999999
No 196
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=64.94 E-value=2.7 Score=20.36 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 0354799999847785455402688
Q T0575 31 DSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
.+.|..+||...|+|..|+..|..+
T Consensus 25 ~G~s~~eIA~~l~is~~TV~~~~~~ 49 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISN 49 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 2799999999968987799999999
No 197
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=64.56 E-value=1.2 Score=23.21 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 35479999984778545540268888999999999999
Q T0575 32 SVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIE 69 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~ 69 (216)
+.|..++|+.+|+|++++.+|-.++-..=...+.....
T Consensus 14 ~ltq~~la~~~gis~~~is~~E~g~~~ps~~~l~~ia~ 51 (66)
T 1utx_A 14 KISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAY 51 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999975969999999987997899999999999
No 198
>2pg4_A Uncharacterized protein; NP_147569.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE CIT; 2.21A {Aeropyrum pernix K1} SCOP: a.4.5.48
Probab=64.56 E-value=4.1 Score=18.93 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHH
Q ss_conf 999999999998749103547999998477854554026888899999
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLY 62 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~ 62 (216)
-+|+- ..--|.++||+ -|+.+|.+..|||..||+- +-|+-|+.+
T Consensus 15 irilp-tllefekkgye-pslaeivkasgvsektffm--glkdrlira 58 (95)
T 2pg4_A 15 IRILP-TLLEFEKKGYE-PSLAEIVKASGVSEKTFFM--GLKDRLIRA 58 (95)
T ss_dssp HHHHH-HHHHHHHTTCC-CCHHHHHHHHCCCHHHHHT--THHHHHHHT
T ss_pred HHHHH-HHHHHHHCCCC-CCHHHHHHHCCCCHHHHHH--HHHHHHHHH
T ss_conf 99988-99999862688-3099999872853667754--448899995
No 199
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=64.45 E-value=3.9 Score=19.12 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 899999999999987491035479999984778545540268
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
.|-+|+ ..+.++| ..|+.+||+..|+|++++++|-.
T Consensus 17 ~r~~Il----~~L~~~~--~~~~~eLa~~l~is~~~vs~~l~ 52 (100)
T 1ub9_A 17 VRLGIM----IFLLPRR--KAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp HHHHHH----HHHHHHS--EEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHH----HHHCCCC--CCCHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999----9972678--96199999988526874419999
No 200
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134}
Probab=64.26 E-value=6 Score=17.65 Aligned_cols=50 Identities=10% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCCCCCCCCCH---HHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCCCHHHHH
Q ss_conf 98886678878---8899999999999987491---03547999998477854554
Q T0575 1 MPTETFFNLPE---EKRSRLIDVLLDEFAQNDY---DSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 1 Mp~~~~~~~~e---e~r~~Il~aA~~lf~~~G~---~~~t~~~IA~~agvs~~tiY 50 (216)
||..+....+. -..+.+.+.-.+.+....+ +.++-+++|++.|||++++-
T Consensus 2 m~~~~~~~~~~~~~s~~d~v~~~l~~~I~~G~l~pG~~L~e~~La~~lgVSRtpVR 57 (222)
T 3ihu_A 2 MPIDTPTDASPADGSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVR 57 (222)
T ss_dssp --------------CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999998898899999999999999998599999196699999999898889999
No 201
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=64.12 E-value=3.2 Score=19.73 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=24.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 9998749103547999998477854554026888
Q T0575 23 DEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
++....|+. |-+++|+.+|||++|+..+...+
T Consensus 13 Rl~e~~g~~--sq~eLA~~lgvs~~tis~~~~~~ 44 (189)
T 2fjr_A 13 RICEAYGFS--QKIQLANHFDIASSSLSNRYTRG 44 (189)
T ss_dssp HHHHHHTCS--SHHHHHHHTTCCHHHHHHHHHSS
T ss_pred HHHHHHCCC--CHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 999984987--79999999796999999999579
No 202
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=64.05 E-value=3.8 Score=19.19 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 8889999999999998749103547999998477854554026888899
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
+.+++.|-+.-.++=.++| .|..++|+.+|+|+++++++=.++...
T Consensus 5 ~~~~~~l~~~ir~~R~~~g---ltq~~lA~~lgvs~~~is~~E~G~~~p 50 (84)
T 2ef8_A 5 DHRYRCLVQLLTKLRKEAS---LSQSELAIFLGLSQSDISKIESFERRL 50 (84)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 7999999999999999959---999999998726999999998799999
No 203
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=63.43 E-value=2.8 Score=20.27 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=18.5
Q ss_pred CCHHHHHHHHCCCHHHHHCCC
Q ss_conf 547999998477854554026
Q T0575 33 VSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~~F 53 (216)
-|+.++|+..|||+.|+.+|=
T Consensus 3 ytI~e~a~~~gvs~~tlR~Ye 23 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYD 23 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHH
T ss_conf 119999999895999999998
No 204
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=63.00 E-value=2.4 Score=20.78 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999987491035479999984778545540268888999999999
Q T0575 17 LIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQL 66 (216)
Q Consensus 17 Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~ 66 (216)
+.+--..+..++|+ |..++|+.+|+|++++.++-.++-..=...+..
T Consensus 11 ~~~rik~~r~~~gl---sq~~lA~~~gvs~~~is~~e~g~~~p~~~~l~~ 57 (76)
T 3bs3_A 11 MLNRIKVVLAEKQR---TNRWLAEQMGKSENTISRWCSNKSQPSLDMLVK 57 (76)
T ss_dssp CCBCHHHHHHHTTC---CHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99999999999399---899999998989999999986998999999999
No 205
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=62.96 E-value=2.9 Score=20.08 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=20.3
Q ss_pred CCHHHHHHHHCCCHHHHHCCCCCHHHHH
Q ss_conf 5479999984778545540268888999
Q T0575 33 VSINRITERAGIAKGSFYQYFADKKDCY 60 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~~F~sKe~L~ 60 (216)
.+|.++|+.+|||+.|+-+| .+.+|+
T Consensus 1 M~IgElA~~~gvs~~tlRyY--e~~GLl 26 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFY--EEKGLV 26 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHH--HHTTCS
T ss_pred CCHHHHHHHHCCCHHHHHHH--HHCCCC
T ss_conf 97899999989199999999--987898
No 206
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=62.57 E-value=2.6 Score=20.46 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 0354799999847785455402688
Q T0575 31 DSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
.+.|..+||++.|+|..|+..|-.+
T Consensus 12 ~G~s~~eIA~~l~iS~~TV~~~~~~ 36 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMN 36 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 2799999998969999999999999
No 207
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=62.31 E-value=1.9 Score=21.58 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8788899999999999987491035479999984778545540268
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+.+.+|-+|+..- . .| ..|+.+||+..|+|++++.+|.+
T Consensus 55 LAdPtRl~IL~~L----~-~g--~~tv~eLa~~lgisqstvS~HL~ 93 (151)
T 3f6v_A 55 AAEPTRRRLVQLL----T-SG--EQTVNNLAAHFPASRSAISQHLR 93 (151)
T ss_dssp HTSHHHHHHHHHG----G-GC--CEEHHHHHTTSSSCHHHHHHHHH
T ss_pred HCCHHHHHHHHHH----H-HC--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 5799999999999----8-29--91799999998878778999875
No 208
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=61.97 E-value=5.4 Score=18.04 Aligned_cols=37 Identities=5% Similarity=0.175 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8899999999999987491035479999984778545540268
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+.-.+||+ ++.++| ..|+.+||++.|+|++++.++-.
T Consensus 9 ~~D~~IL~----~L~~d~--R~s~~~iA~~lgls~~tv~~Ri~ 45 (151)
T 2dbb_A 9 RVDMQLVK----ILSENS--RLTYRELADILNTTRQRIARRID 45 (151)
T ss_dssp HHHHHHHH----HHHHCT--TCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHH----HHHHCC--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999----998859--99999999998969999999999
No 209
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=61.79 E-value=5.3 Score=18.10 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=36.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH-C-CCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 988866788788899999999999987-4-91035479999984778545540268888
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQ-N-DYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~-~-G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
|.+++.....+ -.-.+|+.. |.. . =........||...|++...|...|.|+-
T Consensus 1 ~s~~~~~~~T~-~Ql~~Le~~---F~~~~~yP~~~~r~~LA~~lgL~~~qV~~WFqNrR 55 (73)
T 2hi3_A 1 MSAQTVSGPTE-DQVEILEYN---FNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRL 55 (73)
T ss_dssp CCCSCCSSCCH-HHHHHHHHH---HHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCH-HHHHHHHHH---HHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99887899999-999999999---97858993999999999995998889689449876
No 210
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=61.67 E-value=2.8 Score=20.26 Aligned_cols=39 Identities=5% Similarity=0.010 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 035479999984778545540268888999999999999
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIE 69 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~~~ 69 (216)
.+.|..++|+..|||++++..|-.++-..=...+..+.+
T Consensus 35 ~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~~l~kia~ 73 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMS 73 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 299999999997988989999987999999999999999
No 211
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=61.40 E-value=3 Score=19.97 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=21.5
Q ss_pred HHCCCCC--CCHHHHHHHHCCCHHHHHCC
Q ss_conf 8749103--54799999847785455402
Q T0575 26 AQNDYDS--VSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 26 ~~~G~~~--~t~~~IA~~agvs~~tiY~~ 52 (216)
..+.... .|+.++|+..|||+.|+.+|
T Consensus 8 ~~~~m~~~~ytIgevA~~~gvs~~tLRyY 36 (148)
T 3gpv_A 8 GNKRMNDMYYTIGQVAKMQHLTISQIRYY 36 (148)
T ss_dssp -------CCBCHHHHHHHTTCCHHHHHHH
T ss_pred CCCHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 42165157776999999989498899999
No 212
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=61.32 E-value=3.6 Score=19.38 Aligned_cols=26 Identities=4% Similarity=-0.003 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 91035479999984778545540268
Q T0575 29 DYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 29 G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
--.+.|++++|+++|||++++-..=.
T Consensus 20 ~~~~ltl~~LA~~~GvS~~~lS~iE~ 45 (198)
T 2bnm_A 20 EQVKMDHAALASLLGETPETVAAWEN 45 (198)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 98599999999997989999999984
No 213
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=61.25 E-value=4.9 Score=18.32 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 49103547999998477854554026888
Q T0575 28 NDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 28 ~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
...+.-.+.++|++.|+++..|-..|.|+
T Consensus 44 ~~p~~~~~~~la~~~gl~~~~v~vWF~N~ 72 (80)
T 1wh5_A 44 QRQDDEVIQRFCQETGVPRQVLKVWLHNN 72 (80)
T ss_dssp CTTTHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHEEEECCCC
T ss_conf 69799999999999689888952304027
No 214
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=61.21 E-value=3.4 Score=19.62 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 10354799999847785455402688
Q T0575 30 YDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 30 ~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
.++.|..+||+..|+|..|+.+|-.+
T Consensus 29 ~~G~s~~eIA~~L~iS~~TV~~h~~~ 54 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 93699999988989789999999999
No 215
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=61.20 E-value=6.8 Score=17.26 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 788788899999999999987491035479999984778545540268
Q T0575 7 FNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 7 ~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
.++++. +-++=..+.-|...|..--|+..||+.+|+|+.+++.+-.
T Consensus 28 lgLs~~--e~~vll~l~~~~~~~~~~PS~~~LA~~~g~s~~~v~~~l~ 73 (128)
T 2vn2_A 28 LGLGEG--ELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVR 73 (128)
T ss_dssp TTCCHH--HHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHH
T ss_pred CCCCHH--HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 299978--8999999999986699999999999897929999999999
No 216
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=60.92 E-value=6.1 Score=17.62 Aligned_cols=36 Identities=8% Similarity=0.022 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 999999998749103547999998477854554026
Q T0575 18 IDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 18 l~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
+=..+.-+...|..--|+..||+.+|+|+.+++.+-
T Consensus 37 vll~l~~~~~~g~~~PS~~~La~~~g~s~~tv~~~l 72 (135)
T 2v79_A 37 LLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRL 72 (135)
T ss_dssp HHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999998759879899999989695999999999
No 217
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=60.76 E-value=3.5 Score=19.45 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 0354799999847785455402688
Q T0575 31 DSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
.+.|.++||++.++|..|+.+|..+
T Consensus 41 ~G~s~~eIA~~L~iS~~TV~~~~~~ 65 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 2799999998979699999999999
No 218
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=60.72 E-value=3.4 Score=19.57 Aligned_cols=25 Identities=4% Similarity=0.058 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 0354799999847785455402688
Q T0575 31 DSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
.+.|..+||+..|+|..|+.+|..+
T Consensus 48 ~G~s~~eIA~~L~iS~~TV~~~~~~ 72 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 2899999998979699999999999
No 219
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation, two-component regulatory system; NMR {Bacillus subtilis}
Probab=60.62 E-value=3.6 Score=19.41 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 035479999984778545540268
Q T0575 31 DSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
++.|..+||+..|+|..|+.+|..
T Consensus 26 ~G~t~~eIA~~l~iS~~TV~~~~~ 49 (73)
T 2krf_A 26 KGFTNQEIADALHLSKRSIEYSLT 49 (73)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 489999998786888789999999
No 220
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=60.37 E-value=2.7 Score=20.32 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 354799999847785455402688889999999
Q T0575 32 SVSINRITERAGIAKGSFYQYFADKKDCYLYLI 64 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~ 64 (216)
++|-.++|+..|+|++++.+|..++-..=...+
T Consensus 25 gltq~elA~~lg~s~~~is~~E~G~~~~s~~~l 57 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFNGINALNAYNA 57 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 998999998788049799998889999999999
No 221
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=60.19 E-value=3.7 Score=19.29 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 035479999984778545540268
Q T0575 31 DSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
++.|..+||++.|+|..|+..|-.
T Consensus 35 ~G~s~~eIA~~l~iS~~TV~~~~~ 58 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 289999997684888999999999
No 222
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=60.04 E-value=2.7 Score=20.35 Aligned_cols=42 Identities=5% Similarity=0.066 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 999999999998749103547999998477854554026888899
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
..|-..-..+-.++| .|..++|+.+|+|++++.++-.++...
T Consensus 10 ~~i~~~ik~~R~~~g---lsq~~la~~~gis~~~i~~~E~G~~~~ 51 (82)
T 3clc_A 10 SKVSFVIKKIRLEKG---MTQEDLAYKSNLDRTYISGIERNSRNL 51 (82)
T ss_dssp HHHHHHHHHHHHHTT---CCHHHHHHHHTSCHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 999999999999829---999999878399897999998699899
No 223
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=59.82 E-value=4.1 Score=18.95 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHC-CCHHHHHCCCCCH--HHHHHHHHH
Q ss_conf 0354799999847-7854554026888--899999999
Q T0575 31 DSVSINRITERAG-IAKGSFYQYFADK--KDCYLYLIQ 65 (216)
Q Consensus 31 ~~~t~~~IA~~ag-vs~~tiY~~F~sK--e~L~~~~~~ 65 (216)
+.-..+++.++-. .=...+++|.++. +|++..++.
T Consensus 21 d~~A~~~l~~~y~~~l~~~~~~~~~~~daeDl~qe~~~ 58 (194)
T 1or7_A 21 DQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFI 58 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTSCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 89999999999999999999998696149999999999
No 224
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=59.62 E-value=7.1 Score=17.11 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=13.0
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 98749103547999998477854554
Q T0575 25 FAQNDYDSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 25 f~~~G~~~~t~~~IA~~agvs~~tiY 50 (216)
+...+-.++|+.+||+..+++++++-
T Consensus 40 l~~~~~~~~t~~~la~~l~~~~~~vs 65 (139)
T 3eco_A 40 LYAHQQDGLTQNDIAKALQRTGPTVS 65 (139)
T ss_dssp HHHSTTTCEEHHHHHHHHTCCHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99559999799999999896888999
No 225
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=59.53 E-value=3.5 Score=19.46 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=17.9
Q ss_pred CCHHHHHHHHCCCHHHHHCC
Q ss_conf 54799999847785455402
Q T0575 33 VSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~~ 52 (216)
-|+.++|+.+|||+.|+-+|
T Consensus 2 ytI~e~a~~~gvs~~tlR~Y 21 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHY 21 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
T ss_conf 51899999989499999998
No 226
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=59.21 E-value=3 Score=19.97 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=29.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 999874910354799999847785455402688889999999
Q T0575 23 DEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLI 64 (216)
Q Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~ 64 (216)
++..+.| +|..++|+.+|||+.++..+-.+|-.+=..++
T Consensus 25 e~~~~~g---lsq~eLA~~lGis~~~is~ie~G~~~~s~e~a 63 (104)
T 3cec_A 25 DILDDLD---INTANFAEILGVSNQTIQEVINGQRSITVDIA 63 (104)
T ss_dssp HHHHHHT---CCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 9999879---98999999968679999999828867879999
No 227
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=59.08 E-value=4.4 Score=18.73 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=23.9
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 9998749103547999998477854554026
Q T0575 23 DEFAQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
++|.-.-+++.|..+||+..|+|.+|+-.+.
T Consensus 22 ~v~~l~~~~g~s~~EIA~~l~is~~tvk~~l 52 (70)
T 2o8x_A 22 EALLLTQLLGLSYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999899909999999999897999999999
No 228
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=58.40 E-value=4.1 Score=18.94 Aligned_cols=39 Identities=5% Similarity=-0.022 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 999999999874910354799999847785455402688889
Q T0575 17 LIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 17 Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
|-+.-.++=.++| .|..++|+.+|||++++..|=.++..
T Consensus 13 iG~rir~lR~~~g---ltq~elA~~~gvs~~~is~~E~G~~~ 51 (126)
T 3ivp_A 13 LGLAIKEARKKQG---LTREQVGAMIEIDPRYLTNIENKGQH 51 (126)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHTCCHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCC---CCHHHHHHHCCCCHHHHHHHHCCCCC
T ss_conf 9999999999839---99999977429988589999748779
No 229
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=58.29 E-value=7.5 Score=16.90 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=34.4
Q ss_pred CCCHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 887888-999999999999874910354799999847785455402688889999999999
Q T0575 8 NLPEEK-RSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLG 67 (216)
Q Consensus 8 ~~~ee~-r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~ 67 (216)
++.+.. +.+|=+--..+-.++| .|.+++|+.+|+|++++.++=.++-..-...+..+
T Consensus 2 ~~~d~~~~~~ig~rir~~R~~~g---lt~~elA~~~g~s~~~ls~iE~g~~~ps~~~l~~i 59 (192)
T 1y9q_A 2 SLTDVMFKSQIANQLKNLRKSRG---LSLDATAQLTGVSKAMLGQIERGESSPTIATLWKI 59 (192)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 86478899999999999999829---99999999989499999999769975553699999
No 230
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=58.26 E-value=3.8 Score=19.20 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHCCCHHHHHCC
Q ss_conf 354799999847785455402
Q T0575 32 SVSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~ 52 (216)
.-||.++|+..|||+.|+-+|
T Consensus 4 ~Y~Igeva~~~gvs~~TLRyY 24 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYY 24 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 774999999989498999999
No 231
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=57.87 E-value=7.6 Score=16.85 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHH--HHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 999999--99987491035479999984778545540268
Q T0575 17 LIDVLL--DEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 17 Il~aA~--~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
.++-|. +-+...|| +.|-.+||+..|+|+++++++..
T Consensus 26 ~~E~a~~y~rlL~~~~-~~tQ~eLA~~lG~Srs~VS~~L~ 64 (189)
T 3mky_B 26 AYERGQRYASRLQNEF-AGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp HHHHHHHHHHHHHTTT-TTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999998625-75899999997979999999999
No 232
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=57.87 E-value=2.5 Score=20.65 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999874910354
Q T0575 15 SRLIDVLLDEFAQNDYDSVS 34 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t 34 (216)
+.+.++...+....||+...
T Consensus 21 ~~l~~~l~~~~~~~Gf~~~~ 40 (236)
T 2q0o_A 21 HMIKIALRSFAHSCGYDRFA 40 (236)
T ss_dssp HHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999983988799
No 233
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=57.81 E-value=5.6 Score=17.89 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 88899999999999987491035479999984778545540268
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+.+|-+|+.. +. .| ..|+.+||+..|+|.+++++|-.
T Consensus 24 ~p~Rl~Il~~----L~-~~--~~~v~eLa~~l~is~stvS~HL~ 60 (108)
T 2kko_A 24 NGRRLQILDL----LA-QG--ERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp TSTTHHHHHH----HT-TC--CEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHH----HH-CC--CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999----98-19--97899999998909999999999
No 234
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=56.63 E-value=8 Score=16.71 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 8889999999999998749103547999998477854554026
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
++-|+.=....++++.++| .+|-.+||+..|+|++|+-+..
T Consensus 11 ~~ir~~N~~~il~~i~~~g--~~SR~ela~~~gLs~~Tvs~iv 51 (406)
T 1z6r_A 11 DQIKQTNAGAVYRLIDQLG--PVSRIDLSRLAQLAPASITKIV 51 (406)
T ss_dssp -CHHHHHHHHHHHHHHSSC--SCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999999859--9189999988795999999999
No 235
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=56.44 E-value=2.4 Score=20.79 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 8899999999999987491035479999984778545540268888
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
+.--.||+...+-+.++|.. -+++.+++..|.+.+.+|.-|++.-
T Consensus 50 ~~HW~vI~~lR~~y~~~~~~-P~~R~l~k~~~~~~~~L~~LFp~gP 94 (111)
T 1ji8_A 50 EEHWKLVKYLREYWETFGTC-PPIKMVTKETGFSLEKIYQLFPSGP 94 (111)
T ss_dssp HHHHHHHHHHHHHTTTTSCC-CCSTTGGGGSCCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHCCCCH
T ss_conf 99999999999999997899-7089999981878899999859989
No 236
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=56.39 E-value=2 Score=21.42 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 03547999998477854554026888899
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
.+.|..++|+.+|+|++++.++-.++...
T Consensus 17 ~glsq~ela~~~gi~~~~i~~~E~g~~~p 45 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERSETEP 45 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 29999999989796999999998799899
No 237
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=55.67 E-value=8.2 Score=16.60 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 8889999999999998749103547999998477854554026888899
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
+.+.+.|.+.-.++=.++| .|..++|+.+|++.+++..+=.++..+
T Consensus 9 ~~~~~~l~~~lk~~R~~~g---ltq~~lA~~~gis~~~i~~iE~G~~~~ 54 (83)
T 3f6w_A 9 NARYQALLDLLLEARSAAG---ITQKELAARLGRPQSFVSKTENAERRL 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 8999999999999999829---999999988538999999998799899
No 238
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=55.14 E-value=5.5 Score=17.96 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 03547999998477854554026888
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
.++|+.+|+.++|+|.+|+.+-+.-.
T Consensus 21 rG~sLa~lsr~~Gls~stl~nal~rp 46 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALERH 46 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 68879999999099878999988377
No 239
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=54.87 E-value=5.1 Score=18.19 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 354799999847785455402688
Q T0575 32 SVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
+.|-.++|+..|||+.++.+|=.+
T Consensus 103 GltQ~~lA~~lGvs~~ti~~~E~G 126 (170)
T 2auw_A 103 NLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999999999949999999999779
No 240
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=54.62 E-value=4.8 Score=18.44 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 03547999998477854554026888
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
.+.|-.++|+..|||+.|+.+|=.++
T Consensus 23 ~gltQ~elA~~lgvs~~tv~~wE~G~ 48 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEKGN 48 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 69999999999798999999999499
No 241
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622}
Probab=53.44 E-value=4.1 Score=18.97 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHCC
Q ss_conf 0354799999847785455402
Q T0575 31 DSVSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~ 52 (216)
-..|+.++|+..|||..||-+|
T Consensus 4 ~~~~I~eva~~~gvs~~tlR~y 25 (81)
T 2jml_A 4 MTLRIRTIARMTGIREATLRAW 25 (81)
T ss_dssp CCEEHHHHHHTTSTTHHHHHHH
T ss_pred CEEEHHHHHHHHCCCHHHHHHH
T ss_conf 4355999999988499999999
No 242
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=53.22 E-value=7.7 Score=16.83 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=34.8
Q ss_pred HHHHHH-HHCCCCCCCHHHHHHHHCCCHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999-87491035479999984778545540268-8889999999999999999998752
Q T0575 20 VLLDEF-AQNDYDSVSINRITERAGIAKGSFYQYFA-DKKDCYLYLIQLGIEQKTAFLRQTP 79 (216)
Q Consensus 20 aA~~lf-~~~G~~~~t~~~IA~~agvs~~tiY~~F~-sKe~L~~~~~~~~~~~~~~~~~~~~ 79 (216)
+.+..+ .++ +.|++++|+++|+|++++-..+. ++-..=...+..+...+...+....
T Consensus 233 slLk~~rk~R---GLTL~eLAkrTGIS~S~LSqIERngks~PSl~tL~KIA~AL~V~lsdLf 291 (443)
T 3g7d_A 233 SVLDLFLARR---AHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLL 291 (443)
T ss_dssp HHHHHHHHHT---TCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGGGGS
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHC
T ss_conf 9999999971---8889999988698999999998568889889999999997299999974
No 243
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=53.10 E-value=9 Score=16.30 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=16.9
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 9987491035479999984778545540
Q T0575 24 EFAQNDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 24 lf~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
.+.++| +.|+.+||+..+++++++.+
T Consensus 39 ~l~~~~--~~t~~ela~~l~i~~~~vs~ 64 (145)
T 3g3z_A 39 TLATEG--SRTQKHIGEKWSLPKQTVSG 64 (145)
T ss_dssp HHHHHC--SBCHHHHHHHHTCCHHHHHH
T ss_pred HHHHCC--CCCHHHHHHHHCCCHHHHHH
T ss_conf 999869--94999999998978989999
No 244
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, structural genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=52.99 E-value=3.2 Score=19.76 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 03547999998477854554026888899
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
.+.|..++|+.+|+|.+++.++-.++...
T Consensus 80 ~glTq~elA~~~gvs~~~is~iE~G~~~p 108 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENSKQSL 108 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHTCSCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 29989999999897999999998799889
No 245
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=52.68 E-value=4.2 Score=18.90 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 0354799999847785455402688
Q T0575 31 DSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
.+.|..+||+..|+|..|+.+|..+
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~ 67 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSN 67 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 2899999999978888799999999
No 246
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=52.18 E-value=7.5 Score=16.94 Aligned_cols=41 Identities=12% Similarity=0.348 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999999998749-1035479999984778545540268888
Q T0575 14 RSRLIDVLLDEFAQND-YDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G-~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
...||+.... .+. ........||...|+|...|...|.|+-
T Consensus 16 q~~~Le~~F~---~~~~P~~~~~~~La~~~gl~~~qV~~WF~NrR 57 (61)
T 1akh_A 16 ARAFLEEVFR---RKQSLNSKEKEEVAKKCGITPLQVRVWFINKR 57 (61)
T ss_dssp HHHHHHHHHH---HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9999999998---87999999999999997879999679778521
No 247
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.98 E-value=8.3 Score=16.56 Aligned_cols=40 Identities=18% Similarity=0.443 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999999987491-035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
-.+|++ .|..+.| ....+.+||...|++...|-..|.|+-
T Consensus 23 l~~Le~---~f~~~~~P~~~~~~~La~~~gL~~~~V~~WF~NrR 63 (89)
T 2ecb_A 23 LRVLQA---SFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKK 63 (89)
T ss_dssp HHHHHH---HHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999---99986999999999999885878999999799998
No 248
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=51.95 E-value=9.4 Score=16.17 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 8999999999999-8749103547999998477854554026
Q T0575 13 KRSRLIDVLLDEF-AQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 13 ~r~~Il~aA~~lf-~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
+++.++.|+.-+. .++|. ..|+++||+..+++...+.+.|
T Consensus 46 ~~~~i~aAciy~acR~~~~-prtl~eia~~~~~~~k~l~k~~ 86 (207)
T 1c9b_A 46 ANDAIASACLYIACRQEGV-PRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp CHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 6352999789999998289-8739999999788899999999
No 249
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=51.93 E-value=9.4 Score=16.17 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=22.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 999987491035479999984778545540268
Q T0575 22 LDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 22 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+.-+.+.|+ |..+||+..|.|+++|++|-.
T Consensus 45 ~~~l~~~g~---t~~eiA~~lg~s~s~v~~~l~ 74 (178)
T 1r71_A 45 IGRELAKGK---KKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp HHHHHHTTC---CHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHCCC---CHHHHHHHHCCCHHHHHHHHH
T ss_conf 999998389---899999998889999999999
No 250
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=51.01 E-value=9.7 Score=16.07 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 874910354799999847785455402688
Q T0575 26 AQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 26 ~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
...+-..+|..+||+..|+|++|+.+.-..
T Consensus 21 ~~~~~~~it~~eLa~~l~is~~tvsr~l~~ 50 (230)
T 3cta_A 21 EASNRAYLTSSKLADMLGISQQSASRIIID 50 (230)
T ss_dssp TTSSEEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 205799868999999988888799999999
No 251
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=50.98 E-value=3 Score=20.00 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=28.7
Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 999874910354799999847785455402688889999999
Q T0575 23 DEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLI 64 (216)
Q Consensus 23 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~ 64 (216)
++..+. ++|-.++|+.+|||+.++..+-.+|-.+=..++
T Consensus 15 ~~~~~~---glsq~~lA~~lgvs~~~is~ie~G~~~~s~~~~ 53 (94)
T 2ict_A 15 ESLDEL---NVSLREFARAMEIAPSTASRLLTGKAALTPEMA 53 (94)
T ss_dssp HHHHHH---TCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHH
T ss_pred HHHHHC---CCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHH
T ss_conf 999996---999999999968775889999846433769999
No 252
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=50.39 E-value=9.9 Score=16.00 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHH
Q ss_conf 9999999999987491035479999984778545
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGS 48 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t 48 (216)
..|...-+..+...||=..++.+||+..|++...
T Consensus 31 ~~Ia~~lI~~LD~~GyL~~~~~eia~~l~~~~~~ 64 (76)
T 2k9l_A 31 QELALELLNYLNEKGFLSKSVEEISDVLRCSVEE 64 (76)
T ss_dssp HHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHH
T ss_conf 9999999974598887588999999997909999
No 253
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=50.06 E-value=6.6 Score=17.37 Aligned_cols=10 Identities=0% Similarity=-0.410 Sum_probs=5.2
Q ss_pred CCCCCHHHHH
Q ss_conf 0268888999
Q T0575 51 QYFADKKDCY 60 (216)
Q Consensus 51 ~~F~sKe~L~ 60 (216)
.++++.+.+.
T Consensus 62 ~~~~~~~~~~ 71 (225)
T 3klo_A 62 YSRISDDVLT 71 (225)
T ss_dssp GGGCCHHHHH
T ss_pred CCCCCCCHHH
T ss_conf 5689996599
No 254
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=49.84 E-value=4 Score=19.06 Aligned_cols=12 Identities=0% Similarity=-0.061 Sum_probs=5.5
Q ss_pred HHHHCCCCCCCH
Q ss_conf 998749103547
Q T0575 24 EFAQNDYDSVSI 35 (216)
Q Consensus 24 lf~~~G~~~~t~ 35 (216)
+...-||+....
T Consensus 28 ~~~~~Gf~~~~~ 39 (234)
T 1l3l_A 28 IADHFGFTGYAY 39 (234)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHCCCCEEEE
T ss_conf 999879988999
No 255
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=49.63 E-value=4.1 Score=18.96 Aligned_cols=29 Identities=3% Similarity=0.036 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 03547999998477854554026888899
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
.++|..++|+.+|||+.++.+|-.++...
T Consensus 25 ~gltq~elA~~~gvs~~~is~~E~g~~~p 53 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYESGRAIP 53 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHTCSCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 18869999998099999999997699889
No 256
>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=49.54 E-value=10 Score=15.91 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH--HCCCHHHHHCCCCCHHHH
Q ss_conf 8889999999999998749103547999998--477854554026888899
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITER--AGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~--agvs~~tiY~~F~sKe~L 59 (216)
.+|+++||.+-.+.+.+.| +-+.=+.|++. .++|.+||-+....-|++
T Consensus 16 ~~R~~~IL~~iVe~Yi~tg-ePVGSk~L~~~~~l~~SsATIRN~Ma~LE~~ 65 (338)
T 1stz_A 16 NDRQRKVLYCIVREYIENK-KPVSSQRVLEVSNIEFSSATIRNDMKKLEYL 65 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHC-SCBCHHHHHHHSCCCSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 8999999999999997429-9567899998728998869999999999878
No 257
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=49.43 E-value=8.4 Score=16.54 Aligned_cols=36 Identities=6% Similarity=0.174 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 99999999999987491035479999984778545540
Q T0575 14 RSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
.+..|.+-..+-.++| .++..+||+..|+|++++-.
T Consensus 4 ~EdyL~~i~~l~~~~~--~v~~~~iA~~L~v~~~sv~~ 39 (214)
T 3hrs_A 4 KEDYLKCLYELGTRHN--KITNKEIAQLMQVSPPAVTE 39 (214)
T ss_dssp HHHHHHHHHHTTSSCS--CCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHH
T ss_conf 9999999999983499--87599999997899289999
No 258
>2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei}
Probab=48.66 E-value=7.2 Score=17.04 Aligned_cols=48 Identities=6% Similarity=-0.011 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 999999874910354799999847785455402688889999999999
Q T0575 20 VLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLG 67 (216)
Q Consensus 20 aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~~~~ 67 (216)
..+.-..+.--.+.|-.++|+.+|||++++.+|=.++...=..++..+
T Consensus 37 ~~i~~~R~~~~kglTQ~eLA~~~gvs~~~is~~E~G~~~ps~~~l~ki 84 (107)
T 2jvl_A 37 KAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKM 84 (107)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 999999999886998999999989889999999869978999999999
No 259
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor A3}
Probab=48.62 E-value=7 Score=17.13 Aligned_cols=19 Identities=16% Similarity=0.548 Sum_probs=16.0
Q ss_pred CHHHHHHHHCCCHHHHHCC
Q ss_conf 4799999847785455402
Q T0575 34 SINRITERAGIAKGSFYQY 52 (216)
Q Consensus 34 t~~~IA~~agvs~~tiY~~ 52 (216)
.|.++|+.+|||..||-+|
T Consensus 2 rI~elA~~~Gvs~~tlR~y 20 (222)
T 2dg6_A 2 RLADLSKRSGVSTATIKYY 20 (222)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHH
T ss_conf 6899999989298999999
No 260
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=48.48 E-value=5.7 Score=17.81 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 10354799999847785455402688889999999
Q T0575 30 YDSVSINRITERAGIAKGSFYQYFADKKDCYLYLI 64 (216)
Q Consensus 30 ~~~~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~ 64 (216)
..++|..++|+..|||+.++..+-.+|-.+=..+.
T Consensus 22 ~~glsq~eLA~~lGvs~~~is~i~~G~~~it~~~a 56 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALINNNRKLTTEMA 56 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHH
T ss_conf 67999999999959999999999828778999999
No 261
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=48.39 E-value=11 Score=15.78 Aligned_cols=20 Identities=5% Similarity=0.207 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHCCCHHHHHC
Q ss_conf 35479999984778545540
Q T0575 32 SVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~ 51 (216)
+.|+.+||+..|++++++.+
T Consensus 59 ~~~~~ela~~l~i~~~tvs~ 78 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGR 78 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 98999999998969989999
No 262
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae}
Probab=47.95 E-value=10 Score=15.92 Aligned_cols=36 Identities=14% Similarity=0.385 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHCCC
Q ss_conf 99999999999987491035479999984-----77854554026
Q T0575 14 RSRLIDVLLDEFAQNDYDSVSINRITERA-----GIAKGSFYQYF 53 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~a-----gvs~~tiY~~F 53 (216)
|..|++ ++.+..-..+|.++|.+++ .+|++|+|+.-
T Consensus 19 R~~Il~----~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYRtL 59 (150)
T 2w57_A 19 RLKILE----VLQQPECQHISAEELYKKLIDLGEEIGLATVYRVL 59 (150)
T ss_dssp HHHHHH----HHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHH----HHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 999999----99828999999999999998608885789999999
No 263
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=47.31 E-value=9.5 Score=16.14 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHCCC---CCC-CHHHHHHHHCCCHHHHHC
Q ss_conf 99999999999987491---035-479999984778545540
Q T0575 14 RSRLIDVLLDEFAQNDY---DSV-SINRITERAGIAKGSFYQ 51 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~---~~~-t~~~IA~~agvs~~tiY~ 51 (216)
-++|.+.-.+.+....| +.+ |.+++|+..|||+.|+..
T Consensus 13 y~qI~~~l~~~I~~g~l~~G~~LPs~~~La~~~~VSr~tVr~ 54 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAK 54 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999999999859999939995599999997989899999
No 264
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=47.21 E-value=9 Score=16.31 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 8878889999999999998749103547999998477854554
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY 50 (216)
.+|+ +-..||. .-|+-.|.+..|..+||+..|||+..+-
T Consensus 10 ~L~~-rer~Ii~---~rfGl~~~~~~tl~eIa~~lgiS~erVr 48 (73)
T 1ku3_A 10 KLSE-REAMVLK---MRKGLIDGREHTLEEVGAYFGVTRERIR 48 (73)
T ss_dssp TSCH-HHHHHHH---HHHTTTTSSCCCHHHHHHHHTCCHHHHH
T ss_pred CCCH-HHHHHHH---HHHCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 0999-9999999---9818899998789999999897999999
No 265
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=47.10 E-value=10 Score=15.91 Aligned_cols=16 Identities=6% Similarity=0.266 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHCCCHH
Q ss_conf 3547999998477854
Q T0575 32 SVSINRITERAGIAKG 47 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~ 47 (216)
+.|-.+|....|...|
T Consensus 21 g~sQ~dV~~al~~~~g 36 (151)
T 3d1n_I 21 GLTQTQVGQAMTATEG 36 (151)
T ss_dssp TCCHHHHHHHHSCSSS
T ss_pred CCCHHHHHHHHHCCCC
T ss_conf 6769689999973377
No 266
>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89}
Probab=46.96 E-value=11 Score=15.62 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHCCCHHHHHC
Q ss_conf 35479999984778545540
Q T0575 32 SVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~ 51 (216)
+.|+.+||+..|++++++..
T Consensus 45 ~~t~~ela~~l~~~~~~vs~ 64 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTR 64 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 98999999998979879999
No 267
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=46.87 E-value=11 Score=15.61 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99999999999987491-035479999984778545540268888
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.-.+|+++ |..+.| +......||...|++...|...|.|+-
T Consensus 14 Q~~~Le~~---F~~n~~Ps~~~~~~La~~lgl~~~~V~~WFqNrR 55 (66)
T 1bw5_A 14 QLHTLRTC---YAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 55 (66)
T ss_dssp HHHHHHHH---HHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999---9877998999999999994939899557035288
No 268
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=46.40 E-value=8.3 Score=16.56 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=3.8
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999874
Q T0575 19 DVLLDEFAQN 28 (216)
Q Consensus 19 ~aA~~lf~~~ 28 (216)
+.-..+|...
T Consensus 15 ~~L~~~L~~~ 24 (225)
T 3c3w_A 15 RGLVDLLGAD 24 (225)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHC
T ss_conf 9999999858
No 269
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=46.00 E-value=11 Score=15.52 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=21.9
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 987491035479999984778545540268
Q T0575 25 FAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 25 f~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
+.+.|+ |-.+||+..|+|+++|.++..
T Consensus 20 l~~~G~---tq~~iA~~lg~srs~VS~~lr 46 (192)
T 1zx4_A 20 MKNDGM---SQKDIAAKEGLSQAKVTRALQ 46 (192)
T ss_dssp HHHTTC---CHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCC---CHHHHHHHHCCCHHHHHHHHH
T ss_conf 998799---999999998979999999999
No 270
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=45.83 E-value=8.5 Score=16.50 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 03547999998477854554026888
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
.+.|-.++|+..|||.+++.+|=.++
T Consensus 42 ~gltQ~~lA~~lgvs~~ti~~~E~G~ 67 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 59999999989399899999998899
No 271
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_2* 3iam_2* 3ias_2*
Probab=45.82 E-value=6.3 Score=17.48 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCH------HHHHCCCCCH
Q ss_conf 899999999999987491-0354799999847785------4554026888
Q T0575 13 KRSRLIDVLLDEFAQNDY-DSVSINRITERAGIAK------GSFYQYFADK 56 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~------~tiY~~F~sK 56 (216)
+|..+|.+-..+=.+.|| ..-.+..||+..|++. .|||.+|..+
T Consensus 23 ~r~all~~L~~iQ~~~GyIp~~a~~~iA~~l~v~~a~V~~vatFY~~f~~~ 73 (181)
T 3i9v_2 23 RRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFV 73 (181)
T ss_dssp CGGGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHTTCSSCCSS
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
T ss_conf 665999999999998499299999999999794999999999764534458
No 272
>3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B*
Probab=45.72 E-value=8 Score=16.70 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 03547999998477854554026888
Q T0575 31 DSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
.+.|-.++|+.+|+|+.++.+|=.++
T Consensus 83 ~gltq~elA~~lgvs~~ti~~~E~G~ 108 (133)
T 3gn5_A 83 LSLTQKEASEIFGGGVNAFSRYEKGN 108 (133)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTTC
T ss_pred CCCCHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 49999999988099999999998699
No 273
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=45.26 E-value=12 Score=15.44 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=40.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH------CCCHHHHHCCCCCHHHHHH
Q ss_conf 988866788788899999999999987491035479999984------7785455402688889999
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERA------GIAKGSFYQYFADKKDCYL 61 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~a------gvs~~tiY~~F~sKe~L~~ 61 (216)
|++...-.++.+-|.+|++-+ ...-.+.|-.++|+-. +||++||..--.+|++++.
T Consensus 4 ~~~~~R~~lt~~~k~~l~~~~-----~~~~~~~~Q~~la~wf~~~f~~~Is~STvs~Ilk~k~~~l~ 65 (144)
T 1iuf_A 4 MGKIKRRAITEHEKRALRHYF-----FQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLD 65 (144)
T ss_dssp CCCCSSSCCCSHHHHHHHHHH-----HSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHH
T ss_conf 787656508999999999999-----86599877999999999998899769899999968999973
No 274
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=45.12 E-value=12 Score=15.42 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=5.4
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999864889
Q T0575 137 FKQLVEQGIADGSL 150 (216)
Q Consensus 137 ~~~~i~~~~~~g~~ 150 (216)
+...+....+.|.+
T Consensus 71 vs~~l~~L~~~g~i 84 (152)
T 3bj6_A 71 ISRILQEVQRAGLI 84 (152)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999977824
No 275
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=44.63 E-value=8.7 Score=16.44 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=6.2
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999998648899
Q T0575 137 FKQLVEQGIADGSLV 151 (216)
Q Consensus 137 ~~~~i~~~~~~g~~~ 151 (216)
+...+....+.|.+.
T Consensus 74 ~sr~v~~L~~~gli~ 88 (148)
T 3jw4_A 74 ITSMLQGLEKKGYIE 88 (148)
T ss_dssp HHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999999888963
No 276
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.57 E-value=12 Score=15.36 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHCCCHHHHHC
Q ss_conf 35479999984778545540
Q T0575 32 SVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~ 51 (216)
..|+.+||+..|++++|+.+
T Consensus 50 ~~t~~ela~~l~i~~~tvs~ 69 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAA 69 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 97999999998979868999
No 277
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=44.02 E-value=12 Score=15.30 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999864889
Q T0575 135 AYFKQLVEQGIADGSL 150 (216)
Q Consensus 135 ~~~~~~i~~~~~~g~~ 150 (216)
..+...+....+.|.+
T Consensus 70 ~tvs~~l~~L~~~glv 85 (154)
T 2qww_A 70 SSAAANVDGLISLGLV 85 (154)
T ss_dssp HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 0478999999878975
No 278
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=43.98 E-value=10 Score=15.86 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=7.8
Q ss_pred CHHHHHHHHCCCHHHHH
Q ss_conf 47999998477854554
Q T0575 34 SINRITERAGIAKGSFY 50 (216)
Q Consensus 34 t~~~IA~~agvs~~tiY 50 (216)
|-++|++..|+|.+||-
T Consensus 60 syreIa~~~gvS~aTIs 76 (107)
T 3frw_A 60 TYLDISEKTGASTATIS 76 (107)
T ss_dssp CHHHHHHHHCCCHHHHH
T ss_pred CHHHHHHHHCCCHHHHH
T ss_conf 99999999698757589
No 279
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=43.94 E-value=11 Score=15.56 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 9999999987491-0354799999847785455402688889
Q T0575 18 IDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 18 l~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
+++-...|..+.| +......||...|++...|-..|.|+-.
T Consensus 15 l~~Le~~F~~n~~Ps~~~r~~LA~~lgl~~~qV~~WFqNrR~ 56 (61)
T 2hdd_A 15 LARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRA 56 (61)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHH
T ss_conf 999999998779989999999999979698996672443676
No 280
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=43.89 E-value=5.6 Score=17.87 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 99999999998749103547999998477854554026888899
Q T0575 16 RLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 16 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
++-+.-.++=.+. ++|-.++|+.+|+|++++.++=.++..+
T Consensus 14 ~lg~~lk~~R~~~---gltq~elA~~lgvs~~~is~~E~G~~~~ 54 (86)
T 3eus_A 14 YLCQRLRQARLDA---GLTQADLAERLDKPQSFVAKVETRERRL 54 (86)
T ss_dssp HHHHHHHHHHHHT---TCCHHHHHHHTTCCHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 9999999999984---9999999999796999999998899999
No 281
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.80 E-value=12 Score=15.28 Aligned_cols=41 Identities=17% Similarity=0.438 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99999999999987491-035479999984778545540268888
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.-.+|++ .|..+-| +......||+..|++...|-..|.|+-
T Consensus 18 Q~~~Le~---~F~~~~yP~~~~~~~LA~~~gL~~~~V~~WF~NrR 59 (75)
T 2da5_A 18 QLRALES---SFAQNPLPLDEELDRLRSETKMTRREIDSWFSERR 59 (75)
T ss_dssp HHHHHHH---HHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred HHHHHHH---HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999---99985578999999999996854989999999989
No 282
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=43.05 E-value=5.3 Score=18.09 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=13.3
Q ss_pred CCHHHHHHHHCCCHHHHHC
Q ss_conf 5479999984778545540
Q T0575 33 VSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~ 51 (216)
+|=.+||+..|+|++|+.+
T Consensus 34 iSR~eLa~~tgLs~~tvs~ 52 (380)
T 2hoe_A 34 VSRVELAEELGLTKTTVGE 52 (380)
T ss_dssp BCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
T ss_conf 4999999887969999999
No 283
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, multidrug-binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3d71_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=42.88 E-value=8.8 Score=16.37 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.9
Q ss_pred CCHHHHHHHHCCCHHHHHCC
Q ss_conf 54799999847785455402
Q T0575 33 VSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~~ 52 (216)
.|+.++|+-.|||+.|+.+|
T Consensus 6 ytIge~ak~~gis~~tLRyY 25 (278)
T 1r8e_A 6 YSIGEVSKLANVSIKALRYY 25 (278)
T ss_dssp EEHHHHHHHHTCCHHHHHHH
T ss_pred EEHHHHHHHHCCCHHHHHHH
T ss_conf 20999999988598999999
No 284
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.83 E-value=11 Score=15.57 Aligned_cols=43 Identities=14% Similarity=0.403 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 99999999999987491-03547999998477854554026888899
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
.-.||++. |..+.| ....+..||...|++...|-..|.|+-.-
T Consensus 14 Q~~~Le~~---F~~~~~P~~~~~~~La~~~gL~~~qI~~WF~NrR~k 57 (76)
T 2ecc_A 14 QLAILKSF---FLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57 (76)
T ss_dssp HHHHHHHH---HHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999---988699999999999999891999999999999998
No 285
>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=42.81 E-value=13 Score=15.17 Aligned_cols=40 Identities=13% Similarity=0.356 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 678878889999999999998749103547999998477854554
Q T0575 6 FFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 6 ~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY 50 (216)
.++.+++-.++||++-. +.| ..++..+||+.+||.+..+-
T Consensus 4 ml~~~~d~eqkVL~~L~----eaG-~p~~a~~iA~~~gv~KKeVn 43 (67)
T 2heo_A 4 MLSTGDNLEQKILQVLS----DDG-GPVAIFQLVKKCQVPKKTLN 43 (67)
T ss_dssp -----CHHHHHHHHHHH----HHC-SCEEHHHHHHHHCSCHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----HCC-CCCCHHHHHHHHCCCHHHHH
T ss_conf 12233478999999999----768-97879999999887889999
No 286
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=42.43 E-value=13 Score=15.13 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCCCHHHHH
Q ss_conf 8899999999999987491---03547999998477854554
Q T0575 12 EKRSRLIDVLLDEFAQNDY---DSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~---~~~t~~~IA~~agvs~~tiY 50 (216)
-.++.|.+.-.+.+...-| +.++.++||++.|||++++-
T Consensus 26 ~~~~~v~~~lr~~I~~g~l~pG~~L~e~~La~~~gvSRtpVR 67 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVR 67 (237)
T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 489999999999998299998097599999998794969999
No 287
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=41.81 E-value=11 Score=15.66 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=17.4
Q ss_pred CHHHHHHHHCCCHHHHHCC
Q ss_conf 4799999847785455402
Q T0575 34 SINRITERAGIAKGSFYQY 52 (216)
Q Consensus 34 t~~~IA~~agvs~~tiY~~ 52 (216)
+...+|+..|||++++|..
T Consensus 12 ~~~kLA~~lGis~~aVsqW 30 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHC
T ss_conf 8999999929999999872
No 288
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=41.71 E-value=13 Score=15.05 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHCCCHHHHH
Q ss_conf 3547999998477854554
Q T0575 32 SVSINRITERAGIAKGSFY 50 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY 50 (216)
.+|..+||+..|++++++.
T Consensus 50 ~it~~~La~~~~~~~~tvs 68 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTAT 68 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 9699999999898861899
No 289
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=41.51 E-value=13 Score=15.03 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=4.8
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999864889
Q T0575 138 KQLVEQGIADGSL 150 (216)
Q Consensus 138 ~~~i~~~~~~g~~ 150 (216)
...+....+.|.+
T Consensus 70 sr~l~~L~~~glv 82 (140)
T 2nnn_A 70 KGVVERLDKRGLI 82 (140)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999709966
No 290
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=41.50 E-value=3.7 Score=19.28 Aligned_cols=38 Identities=11% Similarity=0.273 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 89999999999998749103547999998477854554026888
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
.=.+|| +++.++| ..|..+||++.|+|.+|+.+....-
T Consensus 14 ~D~~Il----~~L~~d~--R~s~~eia~~lglS~~tv~~Ri~rL 51 (163)
T 2gqq_A 14 IDRNIL----NELQKDG--RISNVELSKRVGLSPTPCLERVRRL 51 (163)
T ss_dssp HHHHHH----HHHHHCS--SCCTTGGGTSSSCCTTTSSSTHHHH
T ss_pred HHHHHH----HHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999----9999748--9899999999894999999999999
No 291
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.16 E-value=12 Score=15.32 Aligned_cols=42 Identities=19% Similarity=0.464 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 99999999999987491-0354799999847785455402688889
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
.-.+|++. |...-| +......||++.|++...|...|.|+-.
T Consensus 18 Q~~~Le~~---F~~~~~P~~~~~~~La~~l~L~~~qV~~WFqNrR~ 60 (80)
T 2dmq_A 18 QLRTMKSY---FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA 60 (80)
T ss_dssp HHHHHHHH---HHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999---98769989999999998708998996793297799
No 292
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=40.74 E-value=13 Score=15.00 Aligned_cols=35 Identities=3% Similarity=0.275 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 89999999999998749103547999998477854554
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY 50 (216)
+-..|+.. -|.=.|....|+.+||+..|||+..+-
T Consensus 9 rE~~Ii~~---ryGl~~~~~~tl~eia~~lgis~erVr 43 (68)
T 2p7v_B 9 REAKVLRM---RFGIDMNTDYTLEEVGKQFDVTRERIR 43 (68)
T ss_dssp HHHHHHHH---HTTTTSSSCCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHH---HCCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999999---838999997689999999896999999
No 293
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=40.68 E-value=14 Score=14.94 Aligned_cols=35 Identities=11% Similarity=0.332 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 999999999998749103547999998477854554026
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
+.+..+ ..+.-..| .|-.+||++.|+|+.++-++-
T Consensus 8 ~ll~~v-A~lYY~~g---ltQ~eIA~~lgiSR~~VsRlL 42 (315)
T 2w48_A 8 RLIVKI-AQLYYEQD---MTQAQIARELGIYRTTISRLL 42 (315)
T ss_dssp HHHHHH-HHHHHTSC---CCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHH-HHHHHHCC---CCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999-99998349---999999998698999999999
No 294
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.60 E-value=12 Score=15.46 Aligned_cols=41 Identities=10% Similarity=0.351 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 9999999999987491-0354799999847785455402688889
Q T0575 15 SRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
..+|+ ..|.+..| +......||...|++...|-..|.|+-.
T Consensus 19 l~~Le---~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~ 60 (70)
T 2dmu_A 19 LEALE---NLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRA 60 (70)
T ss_dssp HHHHH---HHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999---9999779998799999999967988890363166366
No 295
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=40.55 E-value=14 Score=14.92 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC--CCHHHHHCCCCCHHHH
Q ss_conf 7888999999999999874910354799999847--7854554026888899
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAG--IAKGSFYQYFADKKDC 59 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~ag--vs~~tiY~~F~sKe~L 59 (216)
+.+-...|-+--..+=.++| .|..++|+.+| ||++++-+|=.++-..
T Consensus 2 ~~~~~~~ig~rlr~~R~~~g---ltq~~lA~~~g~~is~~~is~~E~G~~~p 50 (71)
T 2ewt_A 2 SSEYAKQLGAKLRAIRTQQG---LSLHGVEEKSQGRWKAVVVGSYERGDRAV 50 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHTT---CCHHHHHHHTTTSSCHHHHHHHHHTCSCC
T ss_pred CHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHCCCCCHHHHHHHHCCCCCC
T ss_conf 74999999999999999849---96999999988972899999998699899
No 296
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=40.52 E-value=14 Score=14.92 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 3547999998477854554026
Q T0575 32 SVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F 53 (216)
+-++...|+..|+|+.|+|+.-
T Consensus 32 ~gn~~~aA~~Lgi~r~tL~~kl 53 (63)
T 3e7l_A 32 DYDLKRTAEEIGIDLSNLYRKI 53 (63)
T ss_dssp TTCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9989999999895999999999
No 297
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.01 E-value=11 Score=15.55 Aligned_cols=40 Identities=13% Similarity=0.313 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 999999999998749-1035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQND-YDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G-~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
-.+|++..+ .+- ........||...|++...|..+|.|+-
T Consensus 20 ~~~Le~~F~---~~~~P~~~~~~~LA~~~~l~~~qV~~WFqNrR 60 (76)
T 2dn0_A 20 LSALKGSFC---RNQFPGQSEVEHLTKVTGLSTREVRKWFSDRR 60 (76)
T ss_dssp HHHHHHHHH---HSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HCCCCCHHHHHHHHHHHCCCHHHEEHHHHHHH
T ss_conf 999999999---77677899999999996999553413876757
No 298
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=39.96 E-value=14 Score=14.86 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=4.9
Q ss_pred CHHHHHHHHCCCHHH
Q ss_conf 479999984778545
Q T0575 34 SINRITERAGIAKGS 48 (216)
Q Consensus 34 t~~~IA~~agvs~~t 48 (216)
|+.+||+..++++++
T Consensus 49 t~~~la~~~~~~~~~ 63 (139)
T 3bja_A 49 SMSKLIENMGCVPSN 63 (139)
T ss_dssp EHHHHHHHCSSCCTT
T ss_pred CHHHHHHHHCCCHHH
T ss_conf 999999998969989
No 299
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=39.74 E-value=14 Score=14.83 Aligned_cols=17 Identities=12% Similarity=0.470 Sum_probs=7.5
Q ss_pred CCHHHHHHHHCCCHHHH
Q ss_conf 54799999847785455
Q T0575 33 VSINRITERAGIAKGSF 49 (216)
Q Consensus 33 ~t~~~IA~~agvs~~ti 49 (216)
+|+.+||+..+++++++
T Consensus 55 ~t~~eLa~~~~i~~~ti 71 (147)
T 1z91_A 55 LTVKKMGEQLYLDSGTL 71 (147)
T ss_dssp EEHHHHHHTTTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
T ss_conf 99999999979687668
No 300
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=39.73 E-value=14 Score=14.83 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHCCCHHHHHC
Q ss_conf 35479999984778545540
Q T0575 32 SVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~ 51 (216)
++|+.+||+..|++++++-+
T Consensus 43 ~~t~~eLa~~~~~~~~tvs~ 62 (138)
T 3bpv_A 43 GIKQDELATFFHVDKGTIAR 62 (138)
T ss_dssp TCBHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 98999999998969889999
No 301
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.31 E-value=8.8 Score=16.38 Aligned_cols=41 Identities=5% Similarity=0.066 Sum_probs=29.7
Q ss_pred HHHHHHHHHCC-----CCCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 99999998749-----103547999998477854554026888899
Q T0575 19 DVLLDEFAQND-----YDSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 19 ~aA~~lf~~~G-----~~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
+.-...|.+++ ...-.+.+||+..|++...|-..|.|+-.-
T Consensus 21 ~~Le~~F~~n~~~~~~p~~~~~~~La~~~gl~~~~I~~WF~NrR~k 66 (80)
T 2da4_A 21 ATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRK 66 (80)
T ss_dssp HHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999984677889799999999999881999999999999998
No 302
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=38.32 E-value=12 Score=15.24 Aligned_cols=40 Identities=10% Similarity=0.282 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHC-C-CCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99999999999874-9-1035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQN-D-YDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~-G-~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
..||+. .|... - .....+.+||+..|++...|...|.++-
T Consensus 12 ~~iLe~---~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WF~NrR 53 (64)
T 1x2m_A 12 NAILEK---VFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRR 53 (64)
T ss_dssp HHHHHH---HHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999---999838999899999999994998589999758767
No 303
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=38.31 E-value=15 Score=14.67 Aligned_cols=38 Identities=8% Similarity=0.267 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHC
Q ss_conf 788899999999999987491-035479999984778545540
Q T0575 10 PEEKRSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~ 51 (216)
+++-.++|++. +.+.|- ..+|..+||++.|++|..+-+
T Consensus 12 s~d~e~kIl~~----L~~~g~g~~~tA~~LAk~lg~~Kk~vN~ 50 (77)
T 1qgp_A 12 YQDQEQRILKF----LEELGEGKATTAHDLSGKLGTPKKEINR 50 (77)
T ss_dssp HHHHHHHHHHH----HHHHCSSSCEEHHHHHHHHCCCHHHHHH
T ss_pred CCCHHHHHHHH----HHHCCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 85889999999----9965898760299999996988888899
No 304
>3cmy_A HUP2, paired box protein PAX-3; DNA-binding protein, DNA, transcription regulation; 1.95A {Homo sapiens} PDB: 3lnq_A
Probab=38.24 E-value=15 Score=14.67 Aligned_cols=42 Identities=14% Similarity=0.419 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 899999999999987491-035479999984778545540268888
Q T0575 13 KRSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
....+|++. |.++.| +..+..+||...|++...|...|.|+-
T Consensus 12 ~Q~~~Le~~---F~~~~~Ps~~~~~~La~~lgl~~~~V~~WFqNrR 54 (61)
T 3cmy_A 12 EQLEELERA---FERTHYPDIYTREELAQRAKLTEARVQVWFSNRR 54 (61)
T ss_dssp HHHHHHHHH---HHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999---9867998999999999996939788468127667
No 305
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A
Probab=38.17 E-value=15 Score=14.66 Aligned_cols=13 Identities=0% Similarity=-0.051 Sum_probs=4.7
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999864889
Q T0575 138 KQLVEQGIADGSL 150 (216)
Q Consensus 138 ~~~i~~~~~~g~~ 150 (216)
...+....+.|.+
T Consensus 69 sr~l~~L~~~g~v 81 (142)
T 3ech_A 69 TRKIRELEGRNLV 81 (142)
T ss_dssp HHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHCE
T ss_conf 9999999996132
No 306
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=37.99 E-value=15 Score=14.64 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 999999999999-8749103547999998477854554026
Q T0575 14 RSRLIDVLLDEF-AQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 14 r~~Il~aA~~lf-~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
++.++.|+.-+- .++|. .-|+++||+.+++++..+.+.|
T Consensus 51 ~~~~~aAcvy~ACR~~~~-prt~~eia~~~~~~~k~i~~~~ 90 (200)
T 1ais_B 51 IESVMAACVYAACRLLKV-PRTLDEIADIARVDKKEIGRSY 90 (200)
T ss_dssp HHHHHHHHHHHHHHHHTC-CCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHH
T ss_conf 988999999999986468-8668999999753498999999
No 307
>1ocp_A OCT-3; DNA-binding protein; NMR {Mus musculus} SCOP: a.4.1.1
Probab=37.82 E-value=9.3 Score=16.19 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 999999999987491-035479999984778545540268888
Q T0575 16 RLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 16 ~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.+|+ ..|..+.| +.....+||...|++...|...|.|+-
T Consensus 21 ~~Le---~~F~~n~~P~~~~~~~La~~~~l~~~~V~~WFqNrR 60 (67)
T 1ocp_A 21 WSLE---TMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRR 60 (67)
T ss_dssp HHHH---HHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999---999867998999999999996869899889609887
No 308
>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A*
Probab=37.66 E-value=15 Score=14.60 Aligned_cols=38 Identities=13% Similarity=0.387 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCCCHHHHH
Q ss_conf 899999999999987491---03547999998477854554
Q T0575 13 KRSRLIDVLLDEFAQNDY---DSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~---~~~t~~~IA~~agvs~~tiY 50 (216)
-+++|.+.-.+.+....| +.++-+++|++.|||++++-
T Consensus 21 l~e~vy~~i~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVR 61 (226)
T 3dbw_A 21 VRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVR 61 (226)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999999999998499998097799999999891999999
No 309
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=37.45 E-value=15 Score=14.58 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CCC-CHHHHHHHHCCCHHHHHCCCC
Q ss_conf 988866788788899999999999987491---035-479999984778545540268
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDY---DSV-SINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~---~~~-t~~~IA~~agvs~~tiY~~F~ 54 (216)
||.+... .| .-++|.+.-.+.+....| +.+ |.+++|+..|||+.|+-.=+.
T Consensus 3 ~p~~~~~-~p--~y~qi~~~i~~~I~~G~~~~G~~LPs~r~La~~~~vSr~tvr~Al~ 57 (102)
T 1v4r_A 3 MPYKAPE-GK--GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CCCCCCS-SC--CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred CCCCCCC-CC--HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9989999-98--9999999999999849999969986899999997979999999999
No 310
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=37.41 E-value=15 Score=14.57 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=7.2
Q ss_pred CCHHHHHHHHCCCHHHH
Q ss_conf 54799999847785455
Q T0575 33 VSINRITERAGIAKGSF 49 (216)
Q Consensus 33 ~t~~~IA~~agvs~~ti 49 (216)
+|+.+||+..|++++++
T Consensus 59 ~t~~ela~~~~i~~~~v 75 (154)
T 2eth_A 59 KKMKEIAEFLSTTKSNV 75 (154)
T ss_dssp BCHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
T ss_conf 59999999989798799
No 311
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=37.36 E-value=15 Score=14.57 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.7
Q ss_pred CCHHHHHHHHCCCHHHH
Q ss_conf 54799999847785455
Q T0575 33 VSINRITERAGIAKGSF 49 (216)
Q Consensus 33 ~t~~~IA~~agvs~~ti 49 (216)
.|+.+||+..|++++++
T Consensus 48 ~t~~ela~~~~i~~~~v 64 (145)
T 2a61_A 48 KRPGELSVLLGVAKSTV 64 (145)
T ss_dssp BCHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHCCCCHHHH
T ss_conf 89999998829898899
No 312
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, protein structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=37.36 E-value=8.5 Score=16.50 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=19.9
Q ss_pred HCCCCCCCHHHH-HHHHCCCHHHHHCCCC
Q ss_conf 749103547999-9984778545540268
Q T0575 27 QNDYDSVSINRI-TERAGIAKGSFYQYFA 54 (216)
Q Consensus 27 ~~G~~~~t~~~I-A~~agvs~~tiY~~F~ 54 (216)
++=|.++|=++- +=+|||+-|++||.|-
T Consensus 11 ~kYF~n~TdrerA~FEaGIklGALyHQFv 39 (122)
T 2ogf_A 11 KKYFKNLTDRERAVFEGGITLGALFHQFV 39 (122)
T ss_dssp HHTTTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHEEC
T ss_conf 88751398689888863011301331212
No 313
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=37.34 E-value=14 Score=14.80 Aligned_cols=41 Identities=10% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 9999999999987491-0354799999847785455402688889
Q T0575 15 SRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
-.+|+ ..|.++.| +.....+||+..|++...|-..|.|+-.
T Consensus 13 l~~Le---~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 54 (60)
T 1jgg_A 13 LGRLE---KEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 54 (60)
T ss_dssp HHHHH---HHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHHH
T ss_conf 99999---9998779999899999999959895472132832667
No 314
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=36.89 E-value=15 Score=14.51 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=5.0
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999864889
Q T0575 137 FKQLVEQGIADGSL 150 (216)
Q Consensus 137 ~~~~i~~~~~~g~~ 150 (216)
+...+......|.+
T Consensus 73 vs~~l~~L~~~g~i 86 (150)
T 2rdp_A 73 TTDLVDRMERNGLV 86 (150)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999988997
No 315
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=36.88 E-value=15 Score=14.51 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC---CC-CHHHHHHHHCCCHHHHH
Q ss_conf 7888999999999999874910---35-47999998477854554
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYD---SV-SINRITERAGIAKGSFY 50 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~---~~-t~~~IA~~agvs~~tiY 50 (216)
+....+.|.+.-.+.+....|. .+ |-+++|++.|||++++-
T Consensus 2 s~~~~e~v~~~i~~~I~~g~l~pG~~LpsE~eLa~~~gVSRt~VR 46 (239)
T 2di3_A 2 SVKAHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLR 46 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 974999999999999985999981999109999999895999999
No 316
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=36.25 E-value=7.2 Score=17.06 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=17.6
Q ss_pred CCCCCHHHH-HHHHCCCHHHHHCCCC
Q ss_conf 103547999-9984778545540268
Q T0575 30 YDSVSINRI-TERAGIAKGSFYQYFA 54 (216)
Q Consensus 30 ~~~~t~~~I-A~~agvs~~tiY~~F~ 54 (216)
|.++|=++- +=+|||+-|++||.|-
T Consensus 6 F~n~TdrerA~FEaGIklGALyHQFv 31 (131)
T 2iec_A 6 FKRLSDRERAIFEAGITLGAIYHQFC 31 (131)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHEEC
T ss_conf 42088288888863012301331103
No 317
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription factor, alternative splicing, developmental protein; 2.6A {Mus musculus}
Probab=36.00 E-value=15 Score=14.56 Aligned_cols=40 Identities=10% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999999987491-035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
..+|+ .+|.++.| ......+||+.+|++...|-..|.|+-
T Consensus 15 ~~~Le---~~F~~~~yp~~~~r~~LA~~lgl~~~qV~~WFqNrR 55 (62)
T 2vi6_A 15 LCALK---DRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQR 55 (62)
T ss_dssp HHHHH---HHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999---999977999989999999990969899246125577
No 318
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=35.81 E-value=15 Score=14.53 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 99999987491-0354799999847785455402688889
Q T0575 20 VLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 20 aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
+-...|....| +.....+||...|++...|-..|.|+-.
T Consensus 17 ~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~vWFqNrR~ 56 (63)
T 2h1k_A 17 ELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRM 56 (63)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHEECCHHHHH
T ss_conf 9999998679979999999999968592571022675645
No 319
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=35.79 E-value=16 Score=14.39 Aligned_cols=41 Identities=15% Similarity=0.382 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99999999999987491-035479999984778545540268888
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
...+|++ .|..+.| +......||.+.|++...|-..|.|+-
T Consensus 18 q~~~Le~---~F~~~~~Ps~~~~~~La~~l~l~~~qV~~WF~NrR 59 (70)
T 2da1_A 18 QLRVLRQ---YFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTL 59 (70)
T ss_dssp HHHHHHH---HHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999---99974998989999999983798999357028778
No 320
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=35.79 E-value=16 Score=14.39 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=28.4
Q ss_pred HCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 47785455402688889999999999999999998752155664689999999999
Q T0575 42 AGIAKGSFYQYFADKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLRWLLDVG 97 (216)
Q Consensus 42 agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (216)
..+++..+...+.+-.++...++......+.............++.+++..++...
T Consensus 105 ~~I~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~Rla~~L~~l 160 (250)
T 3e6c_C 105 CWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYEL 160 (250)
T ss_dssp EEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 31158777542026999999999999999999999999986634878999999999
No 321
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=35.60 E-value=16 Score=14.37 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHCCC---CCC-CHHHHHHHHCCCHHHHHC
Q ss_conf 9999999999987491---035-479999984778545540
Q T0575 15 SRLIDVLLDEFAQNDY---DSV-SINRITERAGIAKGSFYQ 51 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~---~~~-t~~~IA~~agvs~~tiY~ 51 (216)
++|.+.-.+.+....| +.+ |.+++|+..|||+.|+-.
T Consensus 7 ~QI~~~i~~~I~~g~l~pG~kLPse~eLa~~~~VSr~tVR~ 47 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARN 47 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999999999859999949994899999996978999999
No 322
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=35.53 E-value=16 Score=14.36 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHCCCHHHHH
Q ss_conf 3547999998477854554
Q T0575 32 SVSINRITERAGIAKGSFY 50 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY 50 (216)
++|+.+||+..|++++++-
T Consensus 57 ~~t~~ela~~~~~~~~~vs 75 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMT 75 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 9799999989598998999
No 323
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=35.30 E-value=15 Score=14.69 Aligned_cols=42 Identities=10% Similarity=0.305 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 899999999999987491-035479999984778545540268888
Q T0575 13 KRSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
..-.+|+... ..+.| +.-.+..||.+.|++...|...|.|+-
T Consensus 17 ~ql~~Le~~F---~~~~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR 59 (70)
T 2da2_A 17 YQLRVLQDFF---DANAYPKDDEFEQLSNLLNLPTRVIVVWFQNAR 59 (70)
T ss_dssp HHHHHHHHHH---HHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999---986999999999999997969999689539868
No 324
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=35.23 E-value=13 Score=14.99 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHH-CCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 9999999999987-491-0354799999847785455402688889
Q T0575 15 SRLIDVLLDEFAQ-NDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 15 ~~Il~aA~~lf~~-~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
-.+|+ ..|.. +.| +.....+||...|++...|...|.|+-.
T Consensus 13 l~~Le---~~F~~~~~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRa 55 (72)
T 1uhs_A 13 VEILE---YNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA 55 (72)
T ss_dssp HHHHH---HHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999---99986334389999999999909969999987999999
No 325
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=35.00 E-value=16 Score=14.30 Aligned_cols=42 Identities=10% Similarity=0.348 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999999987491035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
..||++...-... =...-...+||++.|++...|-..|.|+-
T Consensus 19 ~~~Le~~F~~~~~-~P~~~~~~~La~~~gl~~~qI~~WF~NrR 60 (71)
T 1wi3_A 19 LGILQSFIHDVGL-YPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60 (71)
T ss_dssp HHHHHHHHHHHCS-CCCHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998267-78899999998782788999999848788
No 326
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=34.89 E-value=1.7 Score=21.89 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=36.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 988866788788899999999999987491035479999984778545540268888
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
|-+.-|.-+++.+|.+|+..- . +| ..|+.+||+..|+|++++++|...-+
T Consensus 1 ~~p~~~~~L~~~~R~~Il~~L----~-~~--~~~~~ela~~~~~s~~~vs~HL~~L~ 50 (232)
T 2qlz_A 1 MEPDLFYILGNKVRRDLLSHL----T-CM--ECYFSLLSSKVSVSSTAVAKHLKIME 50 (232)
T ss_dssp -CCCHHHHHTSHHHHHHHHHH----T-TT--TTCSSSSCTTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHCCCHHHHHHHHHH----H-CC--CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 984899883899999999999----8-19--99799999998919999999999999
No 327
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=34.67 E-value=17 Score=14.26 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=36.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---CCC-CHHHHHHHHCCCHHHHHC
Q ss_conf 988866788788899999999999987491---035-479999984778545540
Q T0575 1 MPTETFFNLPEEKRSRLIDVLLDEFAQNDY---DSV-SINRITERAGIAKGSFYQ 51 (216)
Q Consensus 1 Mp~~~~~~~~ee~r~~Il~aA~~lf~~~G~---~~~-t~~~IA~~agvs~~tiY~ 51 (216)
||=.+..++| .-++|.+.-.+.+...-| +.+ |.+++|++-|||++|+..
T Consensus 1 ~~~~~~~~~P--ly~qI~~~i~~~I~~G~l~pG~~LPsE~~La~~~~VSr~TVR~ 53 (243)
T 2wv0_A 1 MNINKQSPIP--IYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQ 53 (243)
T ss_dssp CCCCTTSSSC--HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9057999988--8999999999999829999939993699999997969999999
No 328
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=34.50 E-value=17 Score=14.24 Aligned_cols=40 Identities=13% Similarity=0.385 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHCC----CCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 999999999998749----1035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQND----YDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G----~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.+||+. .|..+. ...-....||...|++...|...|.|+-
T Consensus 39 ~~~Le~---~f~~~~~~PYPs~~~~~~La~~~gL~~~qV~~WF~N~R 82 (87)
T 1mnm_C 39 VRILES---WFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 82 (87)
T ss_dssp HHHHHH---HHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 999999---99975898995999999999998829999989888631
No 329
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=34.38 E-value=17 Score=14.23 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHH--HHCCCHHHHHCCCCC
Q ss_conf 888999999999999874910354799999--847785455402688
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITE--RAGIAKGSFYQYFAD 55 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~--~agvs~~tiY~~F~s 55 (216)
.....+||+. +.++| ..|..+||. ..|+|+.++.+|-+-
T Consensus 12 ~~~d~rILe~----L~~~g--~~t~~elA~~~~lgis~~~Vs~hL~~ 52 (111)
T 3b73_A 12 TIWDDRILEI----IHEEG--NGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CHHHHHHHHH----HHHHS--CBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHH----HHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 3379999999----99859--98899998770579899999999999
No 330
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=33.63 E-value=17 Score=14.14 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=5.9
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999864889
Q T0575 137 FKQLVEQGIADGSL 150 (216)
Q Consensus 137 ~~~~i~~~~~~g~~ 150 (216)
+...+....+.|.+
T Consensus 85 vsr~v~~Le~~GlV 98 (166)
T 3deu_A 85 LVRTLDQLEDKGLI 98 (166)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999969887
No 331
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=33.61 E-value=17 Score=14.14 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHCCCC---CC-CHHHHHHHHCCCHHHHHC
Q ss_conf 8999999999999874910---35-479999984778545540
Q T0575 13 KRSRLIDVLLDEFAQNDYD---SV-SINRITERAGIAKGSFYQ 51 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~---~~-t~~~IA~~agvs~~tiY~ 51 (216)
+-.+|-++-.+.+....|. .+ |.+++|+..|||++|+..
T Consensus 30 ~Y~qI~~~L~~~I~~G~l~pG~rLPSereLA~~lgVSR~TVr~ 72 (272)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALE 72 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 8999999999999839999939993799999998959999999
No 332
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=33.40 E-value=15 Score=14.52 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 999999998749103-54799999847785455402688889
Q T0575 18 IDVLLDEFAQNDYDS-VSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 18 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
++.-..+|..+-|-. -...+||+..|++...|-..|.|+-.
T Consensus 46 l~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~vWFqNrR~ 87 (97)
T 1b72_A 46 LTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM 87 (97)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHH
T ss_conf 999999999879987889999888609996671122798988
No 333
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=33.32 E-value=17 Score=14.11 Aligned_cols=40 Identities=15% Similarity=0.387 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHCC----CCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 999999999998749----1035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQND----YDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G----~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
-+||+ ..|.++. -...-...||...|++...|...|.|+-
T Consensus 14 ~~~Le---~~f~~~~~nPYPs~~~~~~La~~~gl~~~qV~~WF~N~R 57 (83)
T 1le8_B 14 VRILE---SWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARR 57 (83)
T ss_dssp HHHHH---HHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999---999983789997999999999998829999999899988
No 334
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=33.32 E-value=9 Score=16.31 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=10.6
Q ss_pred HHHHCCCCCCCHHHHHHH-HCCCHHHHH
Q ss_conf 998749103547999998-477854554
Q T0575 24 EFAQNDYDSVSINRITER-AGIAKGSFY 50 (216)
Q Consensus 24 lf~~~G~~~~t~~~IA~~-agvs~~tiY 50 (216)
.+..+++ +=...|+. .|.|.|++-
T Consensus 16 ~L~~~~I---~Q~~fa~~vl~~SQgtlS 40 (164)
T 2d5v_A 16 ELKRYSI---PQAIFAQRVLCRSQGTLS 40 (164)
T ss_dssp HHHHTTC---CHHHHHHHHTSCCHHHHH
T ss_pred HHHHCCC---CHHHHHHHHHCCCCHHHH
T ss_conf 9987687---599999870057851777
No 335
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=33.30 E-value=17 Score=14.11 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=5.4
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999864889
Q T0575 137 FKQLVEQGIADGSL 150 (216)
Q Consensus 137 ~~~~i~~~~~~g~~ 150 (216)
+...+....+.|.+
T Consensus 67 vs~~i~~L~~~g~I 80 (144)
T 3f3x_A 67 ITAAVDKLEAKGLV 80 (144)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999967880
No 336
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=33.19 E-value=17 Score=14.09 Aligned_cols=15 Identities=7% Similarity=-0.108 Sum_probs=6.3
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999998648899
Q T0575 137 FKQLVEQGIADGSLV 151 (216)
Q Consensus 137 ~~~~i~~~~~~g~~~ 151 (216)
+...+......|.+.
T Consensus 70 vs~~i~~Le~~gli~ 84 (127)
T 2frh_A 70 VVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHCEEE
T ss_conf 999999997212178
No 337
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=33.00 E-value=17 Score=14.07 Aligned_cols=30 Identities=13% Similarity=0.429 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
Q ss_conf 9999999998749103547999998477854554026
Q T0575 17 LIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYF 53 (216)
Q Consensus 17 Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (216)
.|+.|++.+. +...+|+..|||.++++...
T Consensus 3 ~i~~AI~~~G-------~q~~LAr~lGvsq~~Vs~W~ 32 (79)
T 3bd1_A 3 AIDIAINKLG-------SVSALAASLGVRQSAISNWR 32 (79)
T ss_dssp HHHHHHHHHS-------SHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHC-------CHHHHHHHHCCCHHHHHHHH
T ss_conf 8999999968-------99999999199899999988
No 338
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.46 E-value=12 Score=15.40 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999987491-035479999984778545540268888
Q T0575 18 IDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 18 l~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
++.-...|..+-| ......+||...|++...|...|.|+-
T Consensus 15 l~~Le~~F~~n~~P~~~~~~~La~~lgL~~~~V~~WFqNrR 55 (64)
T 2e19_A 15 LSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQ 55 (64)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 99999999847996999999999998809999669733120
No 339
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=32.09 E-value=15 Score=14.60 Aligned_cols=41 Identities=10% Similarity=0.339 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99999999999987491-035479999984778545540268888
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.-.+|+ ..|.+..| +.....+||...|++...|-..|.|+-
T Consensus 12 Ql~~Le---~~F~~~~yP~~~~r~~LA~~lgl~~~~V~~WFqNrR 53 (67)
T 2k40_A 12 QIEVLE---NVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRR 53 (67)
T ss_dssp HHHHHH---HHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999---999978998878999999992989899125018677
No 340
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=31.95 E-value=18 Score=13.95 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=3.9
Q ss_pred HHHHCCCHHHHH
Q ss_conf 998477854554
Q T0575 39 TERAGIAKGSFY 50 (216)
Q Consensus 39 A~~agvs~~tiY 50 (216)
|+..|+|+.|+|
T Consensus 71 A~~LGisR~TL~ 82 (91)
T 1ntc_A 71 ARLLGWGAATLT 82 (91)
T ss_dssp HHHTTCCHHHHH
T ss_pred HHHHCCCHHHHH
T ss_conf 999798999999
No 341
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.08A {Picrophilus torridus dsm 9790} SCOP: d.316.1.1
Probab=31.41 E-value=8.2 Score=16.62 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=14.7
Q ss_pred HHHHHHHCCCHHHHHCCCC
Q ss_conf 9999984778545540268
Q T0575 36 NRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 36 ~~IA~~agvs~~tiY~~F~ 54 (216)
+.-+=+|||+-|++||.|-
T Consensus 16 erA~FEaGIklGaLyHQFv 34 (121)
T 2i52_A 16 QRAFFEAGIKLGAIFHQYT 34 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHEEC
T ss_conf 8988753011300320212
No 342
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=31.41 E-value=18 Score=13.88 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCC
Q ss_conf 88999999999999874910354799999847785455402
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~ 52 (216)
++.+.-|.+-..+-.+.| .++..+||+..|+|++|+...
T Consensus 6 ~~~EdYL~~Iy~l~~~~~--~~~~~~iA~~L~vs~~svt~~ 44 (226)
T 2qq9_A 6 ATTEMYLRTIYELEEEGV--TPLRARIAERLEQSGPTVSQT 44 (226)
T ss_dssp HHHHHHHHHHHHHHHHTC--CCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCHHHHHHH
T ss_conf 239999999999986499--772999999968990799999
No 343
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=31.39 E-value=18 Score=13.88 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999998648899
Q T0575 135 AYFKQLVEQGIADGSLV 151 (216)
Q Consensus 135 ~~~~~~i~~~~~~g~~~ 151 (216)
..+...+....+.|.+.
T Consensus 76 ~tvs~~v~~L~~~Glv~ 92 (153)
T 2pex_A 76 ATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 69999999999889989
No 344
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.98 E-value=19 Score=13.83 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99999999987491-035479999984778545540268888
Q T0575 17 LIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 17 Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
-+++-...|.+..| +.....+||...|++...|-..|.|+-
T Consensus 28 Ql~~Le~~F~~~~yP~~~~r~~LA~~lgL~~~qV~vWFqNrR 69 (80)
T 2dmt_A 28 QLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRR 69 (80)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCHHHH
T ss_conf 999999999986787788999999994989130622047479
No 345
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=30.81 E-value=17 Score=14.11 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 35479999984778545540268888
Q T0575 32 SVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
-.|+.++|+..|||+.++++.-++..
T Consensus 31 ~lt~~evA~~LGvs~~~V~~~i~~g~ 56 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREGH 56 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 34899999996988899999998794
No 346
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.79 E-value=19 Score=13.81 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=12.9
Q ss_pred CCCHHHHHHHH-----CCCHHHHHCC
Q ss_conf 35479999984-----7785455402
Q T0575 32 SVSINRITERA-----GIAKGSFYQY 52 (216)
Q Consensus 32 ~~t~~~IA~~a-----gvs~~tiY~~ 52 (216)
.+|..+|.+.. ++|++|+|+.
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~ 62 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNN 62 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99899999998850789888899999
No 347
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.67 E-value=19 Score=13.80 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99999999999987491-035479999984778545540268888
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.-.+|++ .|..+.| .......||...|++...|...|.|+-
T Consensus 16 Ql~~Le~---~F~~n~~Ps~~~~~~La~~~~L~~~~V~~WFqNrR 57 (71)
T 2da7_A 16 HMSVLKA---YYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp HHHHHHH---HHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999999---99866887899999999980898999999999857
No 348
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.97 E-value=19 Score=13.71 Aligned_cols=42 Identities=10% Similarity=0.344 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 899999999999987491-035479999984778545540268888
Q T0575 13 KRSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
..-.+|+. .|..+.| +......||...|++...|-..|.|+-
T Consensus 17 ~Q~~~Le~---~F~~~~~P~~~~r~~LA~~l~l~~~qV~~WFqNrR 59 (70)
T 2e1o_A 17 DQTIELEK---KFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRR 59 (70)
T ss_dssp HHHHHHHH---HHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999---99886999999999999995989889669607653
No 349
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=29.55 E-value=20 Score=13.66 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=38.6
Q ss_pred CCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHC---CCC
Q ss_conf 988866788788--899999999999987491035479999984778545540---268
Q T0575 1 MPTETFFNLPEE--KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ---YFA 54 (216)
Q Consensus 1 Mp~~~~~~~~ee--~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~---~F~ 54 (216)
|.++. .+.|+- +|--+---.++.+.+.|.+.+|-.++|+.+|++...+-+ ||+
T Consensus 1 M~~~~-~~Ip~ati~RLp~Y~r~L~~l~~~g~~~iSS~eLa~~~gi~~~qVRKDls~fG 58 (215)
T 2vt3_A 1 MNKDQ-SKIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFG 58 (215)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99644-66998999999999999999998599479799999996989999998999864
No 350
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.28 E-value=20 Score=13.63 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 9999999987491-0354799999847785455402688889
Q T0575 18 IDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 18 l~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
+++-...|.++.| +.....+||...|++...|...|.|+-.
T Consensus 19 l~~Le~~F~~n~~P~~~~~~~LA~~lgl~~~~I~~WFqNrR~ 60 (80)
T 2dms_A 19 LDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRA 60 (80)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999999888753899999999829997891462065688
No 351
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.25 E-value=20 Score=13.62 Aligned_cols=26 Identities=4% Similarity=0.172 Sum_probs=20.0
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHH
Q ss_conf 99874910354799999847785455
Q T0575 24 EFAQNDYDSVSINRITERAGIAKGSF 49 (216)
Q Consensus 24 lf~~~G~~~~t~~~IA~~agvs~~ti 49 (216)
-|.=.|....|+.+||+..|||+.-+
T Consensus 30 RfGl~~~~~~Tl~eI~~~lgiSrerV 55 (87)
T 1tty_A 30 RYGLLDGKPKTLEEVGQYFNVTRERI 55 (87)
T ss_dssp HHTTTTSSCCCHHHHHHHHTCCHHHH
T ss_pred HCCCCCCCCCCHHHHHHHHCCCHHHH
T ss_conf 71778999566999999969889999
No 352
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=28.95 E-value=20 Score=13.59 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999864889
Q T0575 135 AYFKQLVEQGIADGSL 150 (216)
Q Consensus 135 ~~~~~~i~~~~~~g~~ 150 (216)
..+...+....+.|.+
T Consensus 81 ~~vs~~l~~L~~~glv 96 (162)
T 3cjn_A 81 STLSRALDGLQADGLV 96 (162)
T ss_dssp HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 8999999999948987
No 353
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.74 E-value=20 Score=13.56 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHCC
Q ss_conf 899999999999987491035479999984-----7785455402
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERA-----GIAKGSFYQY 52 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~a-----gvs~~tiY~~ 52 (216)
.|..|++ ++.+.+ ...|..+|.+.. .+|++|+|+.
T Consensus 12 qR~~Il~----~l~~~~-~~~sa~ei~~~l~~~~~~i~~~TVYR~ 51 (131)
T 2o03_A 12 QRAAIST----LLETLD-DFRSAQELHDELRRRGENIGLTTVYRT 51 (131)
T ss_dssp HHHHHHH----HHHHCC-SCEEHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHH----HHHHCC-CCCCHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999----998189-998999999999975899988899999
No 354
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=28.57 E-value=20 Score=13.54 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=5.0
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999864889
Q T0575 137 FKQLVEQGIADGSL 150 (216)
Q Consensus 137 ~~~~i~~~~~~g~~ 150 (216)
+...+....+.|.+
T Consensus 67 vs~~l~~L~~~glI 80 (140)
T 3hsr_A 67 LTPLLKKLEKKDYV 80 (140)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999817956
No 355
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=28.42 E-value=21 Score=13.52 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHCCCHHHHHC
Q ss_conf 35479999984778545540
Q T0575 32 SVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 32 ~~t~~~IA~~agvs~~tiY~ 51 (216)
+.|+.+||+..+++++++.+
T Consensus 50 ~~~~~ela~~l~~~~~~vs~ 69 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTG 69 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 98999999997989889999
No 356
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.02 E-value=21 Score=13.47 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 88788899999999999987491-035479999984778545540268888
Q T0575 8 NLPEEKRSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.++.+. ..+|+.-...+..+.| .......||+..|++..-|-..|.|+-
T Consensus 13 ~~~~~~-~~~L~~~f~~~~~npyP~~~ek~~La~~~gLs~~qI~~WF~N~R 62 (73)
T 1x2n_A 13 VLPKHA-TNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINAR 62 (73)
T ss_dssp CCCHHH-HHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999-99999999986527997999999999998878999999999999
No 357
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=27.93 E-value=21 Score=13.46 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 8899999999999987491035479999984778545540
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
++-+..|.+-..+-.+.+ .++..+||+..|+|++|+..
T Consensus 6 ~~~EdYL~~Iy~l~~~~~--~v~~~~lA~~L~vs~~svt~ 43 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGV--TPLRARIAERLDQSGPTVSQ 43 (230)
T ss_dssp SHHHHHHHHHHHHHHHTS--CCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--CCCHHHHHHHHCCCCHHHHH
T ss_conf 789999999999984499--75199999997899168999
No 358
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.81 E-value=21 Score=13.45 Aligned_cols=41 Identities=12% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 99999999999987491-035479999984778545540268888
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
...+|++. |....| +......||...|++...|-..|.|+-
T Consensus 18 Q~~~Le~~---F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR 59 (70)
T 2cra_A 18 QLRELERE---YAANKFITKDKRRKISAATSLSERQITIWFQNRR 59 (70)
T ss_dssp HHHHHHHH---HHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHH
T ss_conf 99999999---9883899999999999996899113202114355
No 359
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=27.52 E-value=21 Score=13.41 Aligned_cols=43 Identities=7% Similarity=0.331 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 999999999998749-1035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQND-YDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G-~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.+||+....--..++ .+..-...||...|++..-|...|.|+-
T Consensus 10 ~~iL~~~f~~~~~~PyPs~~e~~~La~~~gL~~~qV~~WF~N~R 53 (60)
T 1k61_A 10 VRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 53 (60)
T ss_dssp HHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999975899994999999999997869999999899988
No 360
>2qne_A Putative methyltransferase; ZP_00558420.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Desulfitobacterium hafniense Y51}
Probab=27.32 E-value=21 Score=13.39 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 678878889999999999998749103--54799999847785455402688889999999
Q T0575 6 FFNLPEEKRSRLIDVLLDEFAQNDYDS--VSINRITERAGIAKGSFYQYFADKKDCYLYLI 64 (216)
Q Consensus 6 ~~~~~ee~r~~Il~aA~~lf~~~G~~~--~t~~~IA~~agvs~~tiY~~F~sKe~L~~~~~ 64 (216)
+.-++++--++|-++|++++.+-|+.- -...+|.+++|...-.=--+|+ .+|+..++
T Consensus 24 ~~~Ls~~~i~~Ih~aal~ILeeiGi~~~~~ealei~~~aGa~Vd~~rv~fp--~~lVe~al 82 (495)
T 2qne_A 24 YNILTEDQVQKIHENTMKILEEIGIEFEYEPALEVFRREGQKVEGKRVYLT--REFVESKL 82 (495)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTCEEECCHHHHHHHHHTTCEEETTEEECC--HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEECCEEEEC--HHHHHHHH
T ss_conf 887999999999999999999819786998999999982998649989968--99999999
No 361
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=27.15 E-value=22 Score=13.36 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=8.5
Q ss_pred HHHHHHHCHHHHHHHHHHH
Q ss_conf 9999870808999999998
Q T0575 97 GIQFQFHNPRLAQIAYKAL 115 (216)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ 115 (216)
+......+|.+...+....
T Consensus 116 ~~~ll~~~p~~~~~l~~~~ 134 (227)
T 3dkw_A 116 YLRQLQDNTPLALALLAKL 134 (227)
T ss_dssp HHHHHSSCTHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHH
T ss_conf 9876320107777775689
No 362
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=27.11 E-value=22 Score=13.36 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 999999999987491-035479999984778545540268888
Q T0575 16 RLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 16 ~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.=+++-...|....| +.-...+||+..|++...|-..|.|+-
T Consensus 30 ~Ql~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~iWFqNrR 72 (81)
T 1b8i_A 30 YQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRR 72 (81)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCHHHH
T ss_conf 9999999999887999999999999990999778212255556
No 363
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=27.10 E-value=22 Score=13.36 Aligned_cols=20 Identities=15% Similarity=0.410 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHCCCHHHHH
Q ss_conf 03547999998477854554
Q T0575 31 DSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY 50 (216)
.+.|+.+||++.++|...+-
T Consensus 15 ~glS~~eva~~l~I~~~~l~ 34 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLV 34 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHH
T ss_conf 69999999988298999999
No 364
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.09 E-value=22 Score=13.36 Aligned_cols=40 Identities=18% Similarity=0.461 Sum_probs=30.3
Q ss_pred HHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHHH
Q ss_conf 99999987491-03547999998477854554026888899
Q T0575 20 VLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKDC 59 (216)
Q Consensus 20 aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~L 59 (216)
+-...|.++-| +.....+||...|++...|-..|.|+-.=
T Consensus 21 ~Le~~F~~~~~P~~~~r~~LA~~l~L~~~~V~~WFqNrR~k 61 (80)
T 2cue_A 21 ALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 61 (80)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCHH
T ss_conf 99999998677779999999999299999987740244078
No 365
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=26.13 E-value=22 Score=13.23 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHC
Q ss_conf 035479999984778545540
Q T0575 31 DSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~ 51 (216)
+++|+.+||+..|++++++-+
T Consensus 61 ~~~t~~eLa~~l~i~~~~vs~ 81 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSG 81 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
T ss_conf 999899999998968748999
No 366
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.13 E-value=20 Score=13.54 Aligned_cols=40 Identities=13% Similarity=0.325 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999999987491-035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
..+|+ ..|..+.| +......||...|++...|...|.|+-
T Consensus 19 ~~~Le---~~F~~~~yPs~~~r~~LA~~l~l~~~qV~~WFqNrR 59 (70)
T 2djn_A 19 LAALQ---RRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKR 59 (70)
T ss_dssp HHHHH---HHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHEEECCCCHH
T ss_conf 99999---999987875488999999985998425215570256
No 367
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=25.91 E-value=23 Score=13.20 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=13.6
Q ss_pred CCHHHHHHHHCCCHHHHHC
Q ss_conf 5479999984778545540
Q T0575 33 VSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 33 ~t~~~IA~~agvs~~tiY~ 51 (216)
-|.+++|++.|+|..++-+
T Consensus 34 PStRqLAkrLg~SHTaiAN 52 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIAN 52 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
T ss_conf 7389999995861899998
No 368
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.87 E-value=23 Score=13.20 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHCC
Q ss_conf 899999999999987491035479999984-----7785455402
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERA-----GIAKGSFYQY 52 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~a-----gvs~~tiY~~ 52 (216)
.|..|++. +.+.+ ..|..+|-+.+ .+|++|+|+-
T Consensus 20 ~R~~Il~~----L~~~~--h~ta~eI~~~l~~~~~~i~~~TVYR~ 58 (145)
T 3eyy_A 20 QRQLVLEA----VDTLE--HATPDDILGEVRKTASGINISTVYRT 58 (145)
T ss_dssp HHHHHHHH----HHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHH
T ss_pred HHHHHHHH----HHHCC--CCCHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999----97279--98999999999975888654889999
No 369
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.79 E-value=11 Score=15.60 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=7.0
Q ss_pred CHHHHHHHHCCCHHHHH
Q ss_conf 47999998477854554
Q T0575 34 SINRITERAGIAKGSFY 50 (216)
Q Consensus 34 t~~~IA~~agvs~~tiY 50 (216)
|+.+||+..++++-.+.
T Consensus 188 tl~eia~~~~i~~k~l~ 204 (345)
T 3k7a_M 188 TFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp CHHHHHHSSSCCSHHHH
T ss_pred CHHHHHHHHCCCHHHHH
T ss_conf 79999988698899999
No 370
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.72 E-value=23 Score=13.18 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=4.3
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999864889
Q T0575 139 QLVEQGIADGSL 150 (216)
Q Consensus 139 ~~i~~~~~~g~~ 150 (216)
..+......|.+
T Consensus 79 ~~l~~L~~~gli 90 (162)
T 3k0l_A 79 KILQDLLANGWI 90 (162)
T ss_dssp HHHHHHHHTTSE
T ss_pred HHHHHHHHCCCE
T ss_conf 999999988997
No 371
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.46 E-value=23 Score=13.14 Aligned_cols=42 Identities=14% Similarity=0.386 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 99999999999987491-0354799999847785455402688889
Q T0575 14 RSRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
.-.+|+ ..|.++.| +......||...|+|...|-..|.|+-.
T Consensus 14 Ql~~Le---~~F~~n~yP~~~~r~~LA~~lgl~~~qI~~WFqNrR~ 56 (68)
T 1yz8_P 14 QLQQLE---ATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 56 (68)
T ss_dssp HHHHHH---HHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999---9999879898999999999959989998997485689
No 372
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=25.40 E-value=23 Score=13.14 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=35.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 8866788788899999999999987-491035479999984778545540
Q T0575 3 TETFFNLPEEKRSRLIDVLLDEFAQ-NDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 3 ~~~~~~~~ee~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
+.......+|-+++.++-|.++=.. +.-+...+++-|.+.||.+..|-.
T Consensus 18 KRfRTKFt~eQkekM~~fAEklGWriqk~de~~V~~FC~eiGV~r~V~Kv 67 (80)
T 1wh7_A 18 KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67 (80)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 55545479899999999999848714336689999999984978552566
No 373
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=24.96 E-value=23 Score=13.08 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 8999999999999874910354799999847785455402688889
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
.+.+||+ ++. .| +-+|=.+||++.|||+.++..|-..-++
T Consensus 6 ~~~~ll~----~L~-~g-~~~SG~~la~~L~iSR~avwk~i~~L~~ 45 (321)
T 1bia_A 6 VPLKLIA----LLA-NG-EFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHH----HHT-TS-SCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHH-CC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 1999999----972-69-9387999999979899999999999997
No 374
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.93 E-value=23 Score=13.20 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 99999999999874910354799999847785455402688
Q T0575 15 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 55 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s 55 (216)
+.=+|.+..| ++|+.++|....-|+-.||+|..|
T Consensus 11 ~aqlDVm~~L-------~~slhemaR~i~rSR~~ir~Yl~~ 44 (51)
T 1tc3_C 11 RAQLDVMKLL-------NVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHHHT-------TCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9988999994-------876999999998859999999569
No 375
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=24.89 E-value=24 Score=13.07 Aligned_cols=17 Identities=12% Similarity=0.479 Sum_probs=7.2
Q ss_pred CCHHHHHHHHCCCHHHH
Q ss_conf 54799999847785455
Q T0575 33 VSINRITERAGIAKGSF 49 (216)
Q Consensus 33 ~t~~~IA~~agvs~~ti 49 (216)
.|..+||+..+++++++
T Consensus 52 ~t~~ela~~l~~~~~~v 68 (142)
T 2bv6_A 52 VNVKKVVTELALDTGTV 68 (142)
T ss_dssp EEHHHHHHHTTCCTTTH
T ss_pred CCHHHHHHHHCCCHHHH
T ss_conf 49999999979887379
No 376
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=24.85 E-value=24 Score=13.06 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=3.4
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998648
Q T0575 139 QLVEQGIADG 148 (216)
Q Consensus 139 ~~i~~~~~~g 148 (216)
..+.+..+.|
T Consensus 158 R~l~~L~~~g 167 (195)
T 2zdb_A 158 KVLADLRREG 167 (195)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHCC
T ss_conf 9999999889
No 377
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=24.77 E-value=24 Score=13.05 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999999987491-035479999984778545540268888
Q T0575 15 SRLIDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 15 ~~Il~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
..+|+++ |.++-| ......+||...|++...|...|.|+-
T Consensus 29 l~~Le~~---F~~~~~P~~~~~~~La~~~gl~~~~V~~WFqNrR 69 (80)
T 2da3_A 29 LEILYQK---YLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 69 (80)
T ss_dssp HHHHHHH---HHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999---9873898999999999997909789114137655
No 378
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=24.75 E-value=24 Score=13.05 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=5.4
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999987491
Q T0575 18 IDVLLDEFAQNDY 30 (216)
Q Consensus 18 l~aA~~lf~~~G~ 30 (216)
++.-.+-+..+|+
T Consensus 47 i~~La~SI~~~G~ 59 (230)
T 1vz0_A 47 LKELADSIREKGL 59 (230)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999986234
No 379
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=24.51 E-value=17 Score=14.20 Aligned_cols=39 Identities=8% Similarity=0.209 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHC-C-CCCCCHHHHHHHHCCCHHHHHCCCCCHH
Q ss_conf 9999999999874-9-1035479999984778545540268888
Q T0575 16 RLIDVLLDEFAQN-D-YDSVSINRITERAGIAKGSFYQYFADKK 57 (216)
Q Consensus 16 ~Il~aA~~lf~~~-G-~~~~t~~~IA~~agvs~~tiY~~F~sKe 57 (216)
.||+. +|... - .....+.+||++.|++...|-..|.++-
T Consensus 21 ~iLE~---~f~~~~~~P~~~~~~~LA~~l~l~~~qV~~WF~NrR 61 (72)
T 2cqx_A 21 DTLEK---VFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRR 61 (72)
T ss_dssp THHHH---HHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHH---HHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999---998868997999999999995898688999998769
No 380
>1q4r_A Protein AT3G17210; center for eukaryotic structural genomics, structural genomics, protein structure initiative CESG, unknown function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=24.44 E-value=23 Score=13.10 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHCCCHH---HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88788899999999999987-49103547999998477854---5540268888999999999999999999
Q T0575 8 NLPEEKRSRLIDVLLDEFAQ-NDYDSVSINRITERAGIAKG---SFYQYFADKKDCYLYLIQLGIEQKTAFL 75 (216)
Q Consensus 8 ~~~ee~r~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~---tiY~~F~sKe~L~~~~~~~~~~~~~~~~ 75 (216)
+.+++.++.++++...|-.. .|...++...-...-+.+.+ .++-.|+|+++|-..........+...+
T Consensus 22 ~~~~~~~~~~~~~l~~L~~~ip~i~~~~~g~n~~~~~~~~~y~~~l~~~F~s~~~l~~Y~~hP~H~~~~~~~ 93 (112)
T 1q4r_A 22 GVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIF 93 (112)
T ss_dssp TCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999999999865429741676523546865567982589999978999999886698299999998
No 381
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.20 E-value=24 Score=12.98 Aligned_cols=40 Identities=23% Similarity=0.531 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHHHC---------------CCHHHHHCCCCCHH
Q ss_conf 9999999987491-0354799999847---------------78545540268888
Q T0575 18 IDVLLDEFAQNDY-DSVSINRITERAG---------------IAKGSFYQYFADKK 57 (216)
Q Consensus 18 l~aA~~lf~~~G~-~~~t~~~IA~~ag---------------vs~~tiY~~F~sKe 57 (216)
++.-...|.+.-| +.....+||.++| ++...|...|.|+-
T Consensus 19 l~~Le~~F~~n~yP~~~~re~lA~~ln~~~~~~~~~~~~~~~lt~~~V~vWFqNrR 74 (95)
T 2cuf_A 19 LAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR 74 (95)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999987998999999999996701100221221003656799999989875
No 382
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=24.05 E-value=24 Score=12.96 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 9999999987491-0354799999847785455402688889
Q T0575 18 IDVLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 18 l~aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
+.+-...|..+.| +......||...|++...|-..|.|+-.
T Consensus 21 ~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~~WFqNrR~ 62 (77)
T 1nk2_P 21 TYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 62 (77)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCHHHHH
T ss_conf 999999998779999999999998709897781241543889
No 383
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=23.95 E-value=24 Score=12.94 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=7.1
Q ss_pred HHHHHCHHHHHHHHHH
Q ss_conf 9987080899999999
Q T0575 99 QFQFHNPRLAQIAYKA 114 (216)
Q Consensus 99 ~~~~~~~~~~~~~~~~ 114 (216)
+....+|.+...+...
T Consensus 118 ~ll~~~p~~~~~~~~~ 133 (232)
T 2gau_A 118 ALLKGNTSFCRYFLKA 133 (232)
T ss_dssp HHHHHCHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHH
T ss_conf 9873399999999999
No 384
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=23.74 E-value=25 Score=12.92 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=6.8
Q ss_pred CCHHHHHHHHCCCHHHH
Q ss_conf 54799999847785455
Q T0575 33 VSINRITERAGIAKGSF 49 (216)
Q Consensus 33 ~t~~~IA~~agvs~~ti 49 (216)
+|..+||+..+++++++
T Consensus 49 ~t~~~La~~~~~~~~tv 65 (138)
T 1jgs_A 49 ITPVELKKVLSVDLGAL 65 (138)
T ss_dssp BCHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
T ss_conf 89999999989788689
No 385
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcription regulatory protein, plasmid, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.65 E-value=25 Score=12.90 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHH
Q ss_conf 9999999999998749103547999998477854
Q T0575 14 RSRLIDVLLDEFAQNDYDSVSINRITERAGIAKG 47 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~ 47 (216)
-.+|+.--.+--.-..-.-+.+++||+.||+|-=
T Consensus 6 ~~kIiS~~~erqn~~~~apvktrdiadaaglsiy 39 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIY 39 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEECHHHHHHCCCHH
T ss_conf 9999999999873767997032113544174078
No 386
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=23.48 E-value=18 Score=14.03 Aligned_cols=47 Identities=13% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCCHHHHHCCCCCH
Q ss_conf 87888999999999999874910-3547999998477854554026888
Q T0575 9 LPEEKRSRLIDVLLDEFAQNDYD-SVSINRITERAGIAKGSFYQYFADK 56 (216)
Q Consensus 9 ~~ee~r~~Il~aA~~lf~~~G~~-~~t~~~IA~~agvs~~tiY~~F~sK 56 (216)
.|++. ..||+.-..--..+.|- .....+||...|+|..-|...|.|+
T Consensus 10 ~s~~~-~~iL~~wf~~~~~nPyP~~~~k~~La~~~gls~~qV~~WF~N~ 57 (64)
T 1du6_A 10 MNKQA-TEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNK 57 (64)
T ss_dssp STTTH-HHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999-9999999998466899899999999999886888989968998
No 387
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=23.31 E-value=13 Score=15.01 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCC
Q ss_conf 8899999999999987491035479999984778545540268
Q T0575 12 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 54 (216)
Q Consensus 12 e~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~ 54 (216)
++|.+|+. .+.-. +++|-++||++.|+|+.++-++-.
T Consensus 20 ~~R~~il~---~lyy~---~~l~q~eIA~~lg~Sr~~V~r~l~ 56 (345)
T 2o0m_A 20 QERFQILR---NIYWM---QPIGRRSLSETMGITERVLRTETD 56 (345)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHH---HHHHC---CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999---99861---898999999886998889999999
No 388
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=23.26 E-value=25 Score=12.85 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCCCHHHHH
Q ss_conf 899999999999987491---03547999998477854554
Q T0575 13 KRSRLIDVLLDEFAQNDY---DSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~---~~~t~~~IA~~agvs~~tiY 50 (216)
..++|.+.-.+.+....| +.+|-+++|++.|||++++-
T Consensus 29 ~~e~v~~~Lr~~I~~g~l~pG~~L~E~~La~~~gVSRtpVR 69 (239)
T 2hs5_A 29 RTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVR 69 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999999999998099999098289999999895979999
No 389
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli BL21}
Probab=23.25 E-value=25 Score=12.85 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----CCCHHHHHCC
Q ss_conf 899999999999987491035479999984-----7785455402
Q T0575 13 KRSRLIDVLLDEFAQNDYDSVSINRITERA-----GIAKGSFYQY 52 (216)
Q Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~a-----gvs~~tiY~~ 52 (216)
-|..|++ ++.+.+=...|.++|-..+ .+|++|+|+-
T Consensus 18 qR~~Il~----~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~ 58 (83)
T 2fu4_A 18 PRLKILE----VLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRV 58 (83)
T ss_dssp HHHHHHH----HHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHH----HHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 9999999----9994899999999999999860899876149999
No 390
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82
Probab=22.82 E-value=22 Score=13.29 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
Q ss_conf 88899999999999987491035479999984778
Q T0575 11 EEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIA 45 (216)
Q Consensus 11 ee~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs 45 (216)
--+|++|++.- .+ ...|..+|++..|+.
T Consensus 10 ~T~RerIi~lL----~~---~~~t~~eia~~l~i~ 37 (105)
T 2gmg_A 10 ATRREKIIELL----LE---GDYSPSELARILDMR 37 (105)
T ss_dssp HHHHHHHHHHT----TT---SCBCTTHHHHSSCCC
T ss_pred CCHHHHHHHHH----HC---CCCCHHHHHHHHCCC
T ss_conf 03999999999----83---999999999995645
No 391
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=22.14 E-value=26 Score=12.69 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=16.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHC
Q ss_conf 9999987491035479999984778545540
Q T0575 21 LLDEFAQNDYDSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 21 A~~lf~~~G~~~~t~~~IA~~agvs~~tiY~ 51 (216)
-++++.++| .+|-.+||+..|+|++|+-+
T Consensus 44 Il~~i~~~g--~iSR~eLa~~tgLS~~TVs~ 72 (429)
T 1z05_A 44 VYKLIDQKG--PISRIDLSKESELAPASITK 72 (429)
T ss_dssp HHHHHHHHC--SBCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCC--CCCHHHHHHHHCCCHHHHHH
T ss_conf 999999859--91899999887969999999
No 392
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=22.12 E-value=26 Score=12.69 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHCCCC-CCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 999999999999874910-354799999847785455402688889
Q T0575 14 RSRLIDVLLDEFAQNDYD-SVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~-~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
.-.+|+ ..|..+.|- .....+||...|++...|-..|.|+-.
T Consensus 13 Ql~~Le---~~F~~~~~Ps~~~~~~LA~~l~l~~~qV~iWFqNrR~ 55 (68)
T 1ahd_P 13 QTLELE---KEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM 55 (68)
T ss_dssp HHHHHH---HHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHCCCCCCCHHHHHHHHHHHCCCHHHEEEEEHHHHH
T ss_conf 999999---9976089899999999999969696780021111688
No 393
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=22.03 E-value=14 Score=14.71 Aligned_cols=26 Identities=4% Similarity=0.201 Sum_probs=16.5
Q ss_pred HHHCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 98749103547999998477854554
Q T0575 25 FAQNDYDSVSINRITERAGIAKGSFY 50 (216)
Q Consensus 25 f~~~G~~~~t~~~IA~~agvs~~tiY 50 (216)
|.-.|....|+.+||+..|||+..+-
T Consensus 31 yGl~~~~~~tl~ei~~~lgvSrerVR 56 (81)
T 1tlh_B 31 FGIDMNTDYTLEEVGKQFDVTRERIR 56 (81)
T ss_dssp TCCCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 17898875669999999897899999
No 394
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.80 E-value=27 Score=12.64 Aligned_cols=39 Identities=13% Similarity=0.503 Sum_probs=29.4
Q ss_pred HHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 99999987491-0354799999847785455402688889
Q T0575 20 VLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 20 aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
.-...|..+.| ......+||.+.|++...|-..|.|+-.
T Consensus 27 ~Le~~F~~n~yP~~~~r~~LA~~~gl~~~~V~~WFqNrR~ 66 (89)
T 2dmp_A 27 ILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRK 66 (89)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999869999999999999929988898897354026
No 395
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=21.73 E-value=23 Score=13.08 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCH
Q ss_conf 999999999999874910354799999847785
Q T0575 14 RSRLIDVLLDEFAQNDYDSVSINRITERAGIAK 46 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 46 (216)
-..|...-+..+.+.||=..++.+||...|++.
T Consensus 21 e~~Ia~~iI~~Ld~~GyL~~~~~ei~~~l~~~~ 53 (130)
T 2k9m_A 21 EQELALELLNYLNEKGFLSKSVEEISDVLRCSV 53 (130)
T ss_dssp HHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCH
T ss_conf 999999999708989825678899998847888
No 396
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.66 E-value=27 Score=12.62 Aligned_cols=13 Identities=0% Similarity=-0.069 Sum_probs=4.9
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999986488
Q T0575 137 FKQLVEQGIADGS 149 (216)
Q Consensus 137 ~~~~i~~~~~~g~ 149 (216)
+...+....+.|.
T Consensus 68 vs~~l~~L~~~gl 80 (155)
T 1s3j_A 68 VTLMADRLEQKNL 80 (155)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999986242
No 397
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=21.55 E-value=27 Score=12.61 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=7.3
Q ss_pred CCHHHHHHHHCCCHHH
Q ss_conf 5479999984778545
Q T0575 33 VSINRITERAGIAKGS 48 (216)
Q Consensus 33 ~t~~~IA~~agvs~~t 48 (216)
.|+.+||+..|+++++
T Consensus 51 ~t~~~La~~l~i~~~~ 66 (146)
T 2gxg_A 51 KTMAYLANRYFVTQSA 66 (146)
T ss_dssp BCHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHCCCHHH
T ss_conf 6999999998979869
No 398
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=21.52 E-value=27 Score=12.60 Aligned_cols=33 Identities=6% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHH
Q ss_conf 999999999999874910354799999847785455
Q T0575 14 RSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSF 49 (216)
Q Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~ti 49 (216)
.+++.+....+| |.+-.+++++|+..|+....+
T Consensus 5 ~q~~~~~i~~~~---~~~Pp~v~dla~~l~~~~~~~ 37 (121)
T 2pjp_A 5 QQAIWQKAEPLF---GDEPWWVRDLAKETGTDEQAM 37 (121)
T ss_dssp HHHHHHHHGGGC---SSSCEEHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHH---CCCCCCHHHHHHHHCCCHHHH
T ss_conf 999999999987---579997999999979299999
No 399
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.48 E-value=27 Score=12.60 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=5.5
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999864889
Q T0575 137 FKQLVEQGIADGSL 150 (216)
Q Consensus 137 ~~~~i~~~~~~g~~ 150 (216)
+...+....+.|.+
T Consensus 69 ~s~~v~~L~~~g~I 82 (146)
T 2fbh_A 69 LARLLDGLESQGLV 82 (146)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999728987
No 400
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=20.96 E-value=28 Score=12.52 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=24.8
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 540268888999999999999999999875
Q T0575 49 FYQYFADKKDCYLYLIQLGIEQKTAFLRQT 78 (216)
Q Consensus 49 iY~~F~sKe~L~~~~~~~~~~~~~~~~~~~ 78 (216)
.||.|+|.++|..++.+.+.+.+.+.+...
T Consensus 4 ~~h~~~~~~~l~~~~a~~i~~~~~~~i~~~ 33 (232)
T 3lhi_A 4 VWHEYENAAEAAQSLADAVADALQGALDEK 33 (232)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 699769999999999999999999999977
No 401
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A
Probab=20.85 E-value=5.7 Score=17.83 Aligned_cols=23 Identities=4% Similarity=-0.271 Sum_probs=9.9
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 554026888899999999999999
Q T0575 48 SFYQYFADKKDCYLYLIQLGIEQK 71 (216)
Q Consensus 48 tiY~~F~sKe~L~~~~~~~~~~~~ 71 (216)
.++++..++++. ..++...+-.+
T Consensus 43 ~~~~~~~~~~~a-eD~vqe~~~~l 65 (184)
T 2q1z_A 43 FLMKSGSVASQA-EECAQDVMATV 65 (184)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHHH
T ss_pred HHHHHCCCHHHH-HHHHHHHHHHH
T ss_conf 999993999899-99999999999
No 402
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=20.75 E-value=28 Score=12.49 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHCC
Q ss_conf 9999874910354799999847785455402
Q T0575 22 LDEFAQNDYDSVSINRITERAGIAKGSFYQY 52 (216)
Q Consensus 22 ~~lf~~~G~~~~t~~~IA~~agvs~~tiY~~ 52 (216)
..++...| .-.|.++||+.+|||..++-++
T Consensus 69 ~~~l~d~~-~~YT~rEvAe~tGv~~e~~rr~ 98 (222)
T 2ev1_A 69 RHLVGDDG-TYVSAREISENYGVDLELLQRV 98 (222)
T ss_dssp HHHTTCCS-CEECHHHHHHHHTCCHHHHHHH
T ss_pred HHHHCCCC-CEECHHHHHHHHCCCHHHHHHH
T ss_conf 77606998-6686999999979199999999
No 403
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.74 E-value=28 Score=12.49 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHC
Q ss_conf 035479999984778545540
Q T0575 31 DSVSINRITERAGIAKGSFYQ 51 (216)
Q Consensus 31 ~~~t~~~IA~~agvs~~tiY~ 51 (216)
.++|+.+||+..+++++|+-+
T Consensus 61 ~~~t~~ela~~~~~~~stvs~ 81 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFN 81 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
T ss_conf 998999999998888727999
No 404
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, protein structure initiative; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A
Probab=20.10 E-value=29 Score=12.39 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 788899999999999987491035479
Q T0575 10 PEEKRSRLIDVLLDEFAQNDYDSVSIN 36 (216)
Q Consensus 10 ~ee~r~~Il~aA~~lf~~~G~~~~t~~ 36 (216)
..++|++.++....++.+.||+++-++
T Consensus 86 ~~~~R~~fi~~iv~~l~~~~fDGiDID 112 (312)
T 3fnd_A 86 DPKARKELIQQIIAFTKEYKLDGFDID 112 (312)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999999998399858984
No 405
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=20.05 E-value=29 Score=12.38 Aligned_cols=39 Identities=13% Similarity=0.367 Sum_probs=28.7
Q ss_pred HHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 99999987491-0354799999847785455402688889
Q T0575 20 VLLDEFAQNDY-DSVSINRITERAGIAKGSFYQYFADKKD 58 (216)
Q Consensus 20 aA~~lf~~~G~-~~~t~~~IA~~agvs~~tiY~~F~sKe~ 58 (216)
+-...|.+..| +.-....||...|++...|-..|.|+-.
T Consensus 16 ~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFQNrR~ 55 (68)
T 1zq3_P 16 ELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRR 55 (68)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999998778887889999999908758999998066898
Done!