Query T0576 3NA2, Leptospirillum rubarum, 172 residues
Match_columns 172
No_of_seqs 2 out of 4
Neff 1.1
Searched_HMMs 15564
Date Fri Jun 4 14:25:29 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0576.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0576.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k7ka_ c.51.4.1 (A:) Hypothet 81.5 0.18 1.2E-05 27.8 0.3 39 11-49 1-44 (209)
2 d1tf1a_ d.110.2.2 (A:) Transcr 32.8 2.3 0.00015 21.0 -1.7 35 13-50 1-38 (184)
3 d1xiwa_ b.1.1.4 (A:) CD3 epsil 31.1 13 0.00083 16.2 1.9 14 62-75 3-16 (91)
4 d1jbja2 b.1.1.4 (A:1-100) CD3 26.8 17 0.0011 15.5 1.9 13 63-75 8-20 (100)
5 d1m55a_ d.89.1.3 (A:) Replicat 22.3 5.5 0.00035 18.6 -1.3 75 77-154 86-182 (193)
6 d1txka1 b.1.18.2 (A:397-511) G 17.8 33 0.0021 13.7 3.1 38 90-129 76-114 (115)
7 d2pgga1 e.8.1.4 (A:31-804) Vir 15.0 35 0.0023 13.5 1.5 45 118-167 407-456 (774)
8 d1l8ya_ a.21.1.1 (A:) Nucleola 13.6 34 0.0022 13.6 1.1 13 127-139 3-15 (84)
9 d1s4ca1 b.82.2.7 (A:1-143) Hyp 12.5 26 0.0017 14.3 0.2 37 128-164 52-88 (143)
10 d1sf9a_ b.34.15.1 (A:) Hypothe 11.3 15 0.00095 15.9 -1.4 8 13-20 4-11 (118)
No 1
>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli [TaxId: 562]}
Probab=81.48 E-value=0.18 Score=27.85 Aligned_cols=39 Identities=38% Similarity=0.716 Sum_probs=21.4
Q ss_pred CCCCCCEEEEEECCCC--HHHHHH--HHHHHHHHC-CEEEEEEC
Q ss_conf 4554310576402741--246889--999999736-81688741
Q T0576 11 SSGRENLYFQGHVEPG--VTDRIG--QMILEMFRT-GMCLFSVR 49 (172)
Q Consensus 11 ssgrenlyfqgh~~~~--vtdrig--~milemfr~-gmclfsvr 49 (172)
||||+||||+|.|..- +|--.+ .-+-++|.. +..+.+..
T Consensus 1 ~~~~~~~~~~~~M~kI~~aT~N~~K~~E~~~iL~~~~i~v~~~~ 44 (209)
T d1k7ka_ 1 SSGRENLYFQGHMQKVVLATGNVGKVRELASLLSDFGLDIVAQT 44 (209)
T ss_dssp CCCTTSSCC--CCEEEEESCCCHHHHHHHHHHHGGGTEEEEETT
T ss_pred CCCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEHH
T ss_conf 99520216454787899993988899999997512597798546
No 2
>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.77 E-value=2.3 Score=20.96 Aligned_cols=35 Identities=37% Similarity=0.734 Sum_probs=20.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHH--CC-EEEEEECC
Q ss_conf 5431057640274124688999999973--68-16887418
Q T0576 13 GRENLYFQGHVEPGVTDRIGQMILEMFR--TG-MCLFSVRS 50 (172)
Q Consensus 13 grenlyfqgh~~~~vtdrig~milemfr--~g-mclfsvrs 50 (172)
||+||||++++| +.+ +..-+|+.+. +| .|.+++++
T Consensus 1 ~r~~l~y~~~~d--l~~-~A~p~L~~La~~~getv~L~v~~ 38 (184)
T d1tf1a_ 1 GRENLYFQGHMD--VLS-VAGPFMRRLMLLSGETVNVAIRN 38 (184)
T ss_dssp CTTSTTCHHHHH--HHH-HHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCCCEEEECCCC--HHH-HHHHHHHHHHHHHCCEEEEEEEE
T ss_conf 965135645699--899-99999999999879959999999
No 3
>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.05 E-value=13 Score=16.23 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.0
Q ss_pred CEEEEEECCEEEEE
Q ss_conf 10677405346765
Q T0576 62 ARKVEITGTSLTIE 75 (172)
Q Consensus 62 arkv~i~gtsltie 75 (172)
.-||.||||+.++-
T Consensus 3 ~~~VsISGTtV~LT 16 (91)
T d1xiwa_ 3 PYKVSISGTTVILT 16 (91)
T ss_dssp CCEEEEETTEEEEE
T ss_pred CEEEEEECCEEEEE
T ss_conf 34899837899997
No 4
>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.83 E-value=17 Score=15.49 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=10.6
Q ss_pred EEEEEECCEEEEE
Q ss_conf 0677405346765
Q T0576 63 RKVEITGTSLTIE 75 (172)
Q Consensus 63 rkv~i~gtsltie 75 (172)
-||.||||+.++-
T Consensus 8 ykVSISGTtV~LT 20 (100)
T d1jbja2 8 YKVSISGTSVELT 20 (100)
T ss_dssp CEEEEETTEEEEE
T ss_pred EEEEEECCEEEEE
T ss_conf 8999858899997
No 5
>d1m55a_ d.89.1.3 (A:) Replication protein Rep, nuclease domain {Adeno-associated virus, aav-5 [TaxId: 272636]}
Probab=22.26 E-value=5.5 Score=18.57 Aligned_cols=75 Identities=31% Similarity=0.569 Sum_probs=44.0
Q ss_pred CCEEEEEEEEEEEE------------------EEEE-CCCCCCCCEEEEEEEECCCCCCEEHHHHCHH-HCCCCCCCHHH
Q ss_conf 12167775322237------------------7674-2757578648999970366674201100100-06798787678
Q T0576 77 EDWHLHCKLETVET------------------VVFD-LSPKDNGGIRMAVVFRDKHQAPVLRAAWLPR-LMPETPSPPEQ 136 (172)
Q Consensus 77 e~whlhc~letvet------------------vvfd-lspk~nggirmavvf~dkhq~pvlraawlpr-lmp~tpsppeq 136 (172)
+.+|||+-+++-.- .+|+ .+|+-.+=.+++...+++ +--++-...+|+ |||.+ |||-
T Consensus 86 ~~fHlHvli~~~~i~~r~~gr~l~~~~~~~~~~~~~g~~p~~~~w~~~~k~kk~g-~~ri~d~~fI~nYLlpK~--ppe~ 162 (193)
T d1m55a_ 86 EYFHLHTLVETSGISSMVLGRYVSQIRAQLVKVVFQGIEPQINDWVAITKVKKGG-ANKVVDSGYIPAYLLPKV--QPEL 162 (193)
T ss_dssp SCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTSTTCCCCSTTSEEECBSSTTS-CBCCEETTHHHHHTTTCC--TTTE
T ss_pred CCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC-CCEECCHHHHHHHHCCCC--CCCC
T ss_conf 8526999954899783109999999999999986266776766633688741688-745621878898745678--8650
Q ss_pred HHHHHH--HHCCCCEEEECC
Q ss_conf 877655--420141577046
Q T0576 137 FWAFTQ--RYIDLPMVVDAR 154 (172)
Q Consensus 137 fwaftq--ryidlp~vvdar 154 (172)
-||+|. +|++.-.-+..|
T Consensus 163 ~WAwTNi~e~~~acLs~~~R 182 (193)
T d1m55a_ 163 QWAWTNLDEYKLAALNLEER 182 (193)
T ss_dssp EEEEECCGGGTTGGGCHHHH
T ss_pred EEEEECHHHHHHHHHHHHHH
T ss_conf 79871698899998658999
No 6
>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.75 E-value=33 Score=13.72 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=25.6
Q ss_pred EEEEECCCCC-CCCEEEEEEEECCCCCCEEHHHHCHHHCCC
Q ss_conf 7767427575-786489999703666742011001000679
Q T0576 90 TVVFDLSPKD-NGGIRMAVVFRDKHQAPVLRAAWLPRLMPE 129 (172)
Q Consensus 90 tvvfdlspk~-nggirmavvf~dkhq~pvlraawlprlmp~ 129 (172)
-+.|+|.|.| +.-+-|-...++..+ .|--.||-|+-|+
T Consensus 76 Rl~f~l~p~d~~~~vELR~~L~~~~~--~lSETWlYq~~~~ 114 (115)
T d1txka1 76 RLVMRVKVKDAKKTTEMRAALVNADQ--TLSETWSYQLPAN 114 (115)
T ss_dssp EEEEEEEESCTTSCEEEEEEEECSSS--EEEEEEEEEECTT
T ss_pred EEEEEEECCCCCCCEEEEEEEECCCE--ECCCEEEEECCCC
T ss_conf 99999983899998799999605995--3140693445889
No 7
>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
Probab=15.04 E-value=35 Score=13.51 Aligned_cols=45 Identities=33% Similarity=0.505 Sum_probs=33.8
Q ss_pred EHHHHCHHHCCCCCCC-HHHHHHHHHHHCCCCEEEEC----CCCEEECCCCCCCC
Q ss_conf 0110010006798787-67887765542014157704----67467526788888
Q T0576 118 LRAAWLPRLMPETPSP-PEQFWAFTQRYIDLPMVVDA----RNRQLVFPGSGQGG 167 (172)
Q Consensus 118 lraawlprlmp~tpsp-peqfwaftqryidlp~vvda----rnrqlv~pgsgqg~ 167 (172)
|.-.|- +.-+| -.+-||.+--||---||||. -|-|+-+||.|-|.
T Consensus 407 LTRGWs-----~~G~P~fN~TWAt~am~~aP~mvVdsscllmNlQ~kt~GQGSGN 456 (774)
T d2pgga1 407 LTRGWS-----DNGDPMFNQTWATFAMNIAPALVVDSSCLIMNLQIKTYGQGSGN 456 (774)
T ss_dssp HHHHSE-----ETTEECBCHHHHHHHHHTHHHHHBSCEEEEBTEEEECCSBCTTS
T ss_pred HHCCCC-----CCCCCCCCHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCC
T ss_conf 972677-----68985635889999983186136422676520455678888873
No 8
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.60 E-value=34 Score=13.60 Aligned_cols=13 Identities=38% Similarity=1.099 Sum_probs=11.4
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 6798787678877
Q T0576 127 MPETPSPPEQFWA 139 (172)
Q Consensus 127 mp~tpsppeqfwa 139 (172)
.||||..+|+.|.
T Consensus 3 lpetpktaeeiWQ 15 (84)
T d1l8ya_ 3 LPESPKRAEEIWQ 15 (84)
T ss_dssp CCCCCCHHHHHHH
T ss_pred CCCCCCCHHHHHH
T ss_conf 9989878999999
No 9
>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus influenzae [TaxId: 727]}
Probab=12.52 E-value=26 Score=14.34 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCEEECCCCC
Q ss_conf 7987876788776554201415770467467526788
Q T0576 128 PETPSPPEQFWAFTQRYIDLPMVVDARNRQLVFPGSG 164 (172)
Q Consensus 128 p~tpsppeqfwaftqryidlp~vvdarnrqlv~pgsg 164 (172)
.+|-.+.+.+|-.-++|||+-.++..+.+--+.+-++
T Consensus 52 ~~t~~~~~~~~E~H~~YiDIq~vl~G~E~i~~~~~~~ 88 (143)
T d1s4ca1 52 PETAEPSSKKAELHHEYLDVQVLIRGTENIEVGATYP 88 (143)
T ss_dssp CBCBCGGGSCEEECSSEEEEEEEEESCEEEEECCSCC
T ss_pred CCCCCHHHCCCCCCCCEEEEEEEEECCEEEEEECCCC
T ss_conf 7767832356210122699999966766899823777
No 10
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=11.30 E-value=15 Score=15.87 Aligned_cols=8 Identities=88% Similarity=1.468 Sum_probs=0.0
Q ss_pred CCCCEEEE
Q ss_conf 54310576
Q T0576 13 GRENLYFQ 20 (172)
Q Consensus 13 grenlyfq 20 (172)
|.||||||
T Consensus 4 ~~~~~~~~ 11 (118)
T d1sf9a_ 4 GTENLYFQ 11 (118)
T ss_dssp GGGHHHHH
T ss_pred CCCCEEEC
T ss_conf 76520340
Done!