Query T0577 BvR155, , 116 residues
Match_columns 116
No_of_seqs 42 out of 44
Neff 2.9
Searched_HMMs 22458
Date Fri Jun 4 14:25:37 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0577.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0577.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckn_A Basic fibroblast growth 78.4 3.8 0.00017 21.0 7.2 82 8-107 6-87 (95)
2 1nez_G T-cell surface glycopro 74.5 4.2 0.00019 20.7 4.8 41 13-57 6-46 (128)
3 3bis_A Programmed cell death 1 73.0 5.3 0.00024 20.1 9.9 97 11-108 1-108 (222)
4 1pko_A Myelin oligodendrocyte 67.0 7.2 0.00032 19.3 6.8 94 9-105 4-110 (139)
5 1sz7_A BET3 homolog, trafficki 64.7 5.1 0.00023 20.2 3.5 29 10-38 151-179 (200)
6 2oi9_B V alpha, T cell recepto 62.8 5.4 0.00024 20.1 3.3 44 14-61 3-46 (113)
7 1dlf_L Anti-dansyl immunoglobu 62.7 7.4 0.00033 19.2 4.1 44 18-61 8-52 (113)
8 3kvq_A Vascular endothelial gr 58.9 8.2 0.00037 18.9 3.7 89 4-107 3-91 (108)
9 1epf_A NCAM, protein (neural c 58.5 10 0.00046 18.3 10.4 86 12-110 3-92 (191)
10 3idu_A Uncharacterized protein 57.5 11 0.00047 18.2 8.3 83 11-104 18-100 (127)
11 1qz1_A Neural cell adhesion mo 55.5 11 0.00051 18.0 9.6 42 11-56 2-43 (291)
12 2oi9_C V beta, T cell receptor 53.5 12 0.00055 17.8 4.5 40 14-58 4-43 (121)
13 3c60_A TCR YAE62 alpha chain; 53.4 6.1 0.00027 19.7 2.3 42 14-59 3-44 (199)
14 3dmm_C T-cell surface glycopro 52.4 13 0.00057 17.7 5.5 75 14-92 12-102 (166)
15 2hp4_A T-cell surface glycopro 52.4 13 0.00057 17.7 4.9 41 14-57 3-43 (114)
16 3eak_A NBBCII10-FGLA; antibody 52.3 13 0.00058 17.7 4.4 41 21-61 10-51 (137)
17 2v44_A NCAM2, neural cell adhe 51.9 13 0.00058 17.7 7.6 75 21-110 12-88 (189)
18 1ol0_A Immunoglobulin G; camel 51.8 11 0.00049 18.1 3.4 39 20-61 9-48 (121)
19 1v8h_A Sulfur oxidation protei 51.2 13 0.0006 17.6 11.9 92 11-113 1-104 (107)
20 1ub6_H Antibody 19G2, alpha ch 50.2 9.1 0.0004 18.7 2.8 35 22-59 10-45 (208)
21 3bik_B Programmed cell death p 49.3 14 0.00064 17.4 5.5 43 14-59 12-54 (134)
22 2z35_A T-cell receptor alpha-c 48.7 15 0.00066 17.4 3.8 44 14-61 3-46 (112)
23 2dav_A SLOW MYBP-C, myosin-bin 47.4 15 0.00069 17.2 6.1 87 17-106 13-101 (126)
24 1zxq_A ICAM-2, intercellular a 47.1 11 0.00047 18.3 2.7 25 11-35 2-26 (192)
25 3bae_H WO2 IGG2A FAB fragment 46.8 16 0.0007 17.2 3.6 40 20-60 9-49 (228)
26 1qgc_4 Protein (inmunoglobulin 45.5 17 0.00074 17.0 3.6 36 21-57 11-47 (438)
27 2dlt_A Myosin binding protein 44.3 17 0.00077 16.9 6.7 79 11-105 8-88 (106)
28 3bp6_A Programmed cell death p 43.6 18 0.00079 16.9 5.6 44 13-60 1-45 (117)
29 1dee_B IGM RF 2A2; FAB-IBP com 42.7 18 0.00081 16.8 4.3 38 21-61 10-48 (223)
30 2cr3_A Basic fibroblast growth 42.6 18 0.00081 16.8 6.7 74 20-112 12-85 (99)
31 1x9q_A SCFV, 4M5.3 anti-fluore 42.5 18 0.0008 16.8 3.3 35 23-57 27-62 (268)
32 2nw2_A ELS4 TCR alpha chain; T 42.4 18 0.00082 16.7 4.9 43 5-60 2-44 (200)
33 2v5t_A NCAM2, N-CAM 2, neural 42.2 19 0.00083 16.7 5.8 23 13-35 4-26 (189)
34 1qfw_M FV, antibody (anti beta 42.0 19 0.00083 16.7 4.6 39 18-60 8-46 (108)
35 1lp9_E T-cell receptor alpha c 41.3 19 0.00085 16.6 4.2 41 17-61 7-47 (194)
36 1bec_A 14.3.D T cell antigen r 40.2 20 0.00089 16.5 5.6 40 14-59 2-42 (238)
37 1iby_A Nitrosocyanin; RED copp 38.5 6.2 0.00028 19.7 0.5 17 18-34 37-53 (112)
38 1z9m_A GAPA225; nectin-like, I 37.8 22 0.00097 16.3 9.0 85 16-107 41-130 (145)
39 2bk8_A Connectin, M1, titin he 37.1 22 0.00099 16.2 7.8 80 14-107 4-85 (97)
40 3cx2_A Myosin-binding protein 36.8 23 0.001 16.2 7.0 86 18-106 11-98 (108)
41 1j05_L T84.66 antibody, anti-C 36.7 23 0.001 16.2 4.5 38 22-59 12-49 (111)
42 1p4b_L Antibody variable light 36.6 23 0.001 16.2 4.3 38 23-61 17-54 (135)
43 2rhe_A Bence-jones protein RHE 35.9 21 0.00093 16.4 2.8 37 22-61 11-48 (114)
44 1ncn_A T lymphocyte activation 34.9 24 0.0011 16.0 3.8 43 23-66 6-49 (110)
45 2gj6_D A6-TCR; X-RAY crystallo 34.0 25 0.0011 15.9 5.0 44 14-61 3-46 (200)
46 3cue_D Transport protein parti 33.9 15 0.00067 17.3 1.8 29 10-38 155-183 (193)
47 3irg_B Obscurin-like protein 1 33.5 25 0.0011 15.9 8.6 80 14-108 16-97 (107)
48 2ial_A CD4+ T cell receptor E8 33.4 26 0.0011 15.9 5.1 38 17-60 6-44 (202)
49 3h0t_B FAB fragment, heavy cha 33.4 26 0.0011 15.9 5.3 37 23-60 12-49 (237)
50 1k0h_A Gpfii; twisted beta-san 33.0 11 0.00047 18.2 0.9 37 14-61 67-103 (117)
51 3bkj_L WO2 IGG2A FAB fragment 32.3 27 0.0012 15.8 3.8 39 22-60 45-84 (252)
52 2oxg_Z SOXZ protein; immunoglo 31.9 27 0.0012 15.7 10.8 85 17-112 8-104 (108)
53 1f97_A Junction adhesion molec 31.7 27 0.0012 15.7 5.4 29 7-35 100-128 (212)
54 1pkq_A (8-18C5) chimeric FAB, 31.7 27 0.0012 15.7 4.6 46 17-62 28-75 (241)
55 2edh_A Obscurin; IG-fold, stru 31.6 27 0.0012 15.7 7.9 79 3-99 12-92 (113)
56 2wra_A Lectin, BCLA; sugar bin 30.9 28 0.0013 15.6 3.1 27 76-103 17-43 (128)
57 2cua_A Protein (CUA); CUA cent 30.8 9.7 0.00043 18.5 0.4 13 22-34 63-75 (135)
58 2yz1_A Tyrosine-protein phosph 30.7 22 0.00099 16.3 2.3 41 17-61 13-53 (120)
59 2vyr_E Human single domain ant 29.9 29 0.0013 15.5 4.1 88 22-112 11-123 (153)
60 2v9t_A Roundabout homolog 1; s 29.5 29 0.0013 15.5 2.7 85 7-106 5-98 (117)
61 1lr0_A TOLA protein; domain-sw 29.4 26 0.0012 15.8 2.5 30 16-45 41-70 (129)
62 1uzv_A Pseudomonas aeruginosa 29.3 24 0.0011 16.1 2.2 21 77-99 11-32 (114)
63 2jmb_A AGR_L_42P, hypothetical 29.3 15 0.00067 17.3 1.2 29 28-57 13-47 (79)
64 1c1e_H Catalytic antibody 1E9 29.2 30 0.0013 15.4 4.9 82 23-112 12-118 (219)
65 1mwa_A 2C alpha chain, 2C T ce 28.7 31 0.0014 15.4 4.4 41 17-61 6-46 (202)
66 1ves_A VNAR, NEW antigen recep 28.3 31 0.0014 15.3 4.7 40 17-59 6-46 (113)
67 3b9v_A Heavy chain variable do 28.1 31 0.0014 15.3 4.6 38 21-61 10-48 (120)
68 1oaq_L Light chain; antibody, 27.9 32 0.0014 15.3 4.6 37 23-60 12-48 (120)
69 2esv_E KK50.4 T cell receptor 27.3 32 0.0014 15.2 4.6 37 17-59 5-42 (240)
70 2jju_A Signal regulatory prote 27.2 33 0.0015 15.2 2.7 47 2-60 2-48 (127)
71 1jhl_L IGG1-kappa D11.15 FV (l 25.7 35 0.0015 15.1 4.9 44 14-61 4-47 (108)
72 2otu_A FV light chain variable 25.5 35 0.0016 15.0 3.9 33 22-57 12-44 (115)
73 1i8k_A Epidermal growth factor 25.5 34 0.0015 15.1 2.5 53 13-70 3-57 (107)
74 1nbq_A JAM, junctional adhesio 25.5 35 0.0016 15.0 6.9 33 22-59 15-47 (209)
75 3bn3_B ICAM-5, intercellular a 25.4 35 0.0016 15.0 5.8 25 11-35 2-26 (196)
76 3bdb_A Novel immune-type recep 25.2 14 0.00062 17.5 0.4 70 20-92 8-88 (137)
77 2wbj_D OB TCR; transmembrane, 25.2 36 0.0016 15.0 4.8 71 13-88 26-108 (279)
78 1qfo_A Protein (sialoadhesin); 25.1 36 0.0016 15.0 3.9 46 17-62 6-53 (119)
79 1q0x_L FAB 9B1, light chain; a 24.0 38 0.0017 14.9 4.6 38 23-61 12-49 (212)
80 1kxv_C Camelid VHH domain CAB1 23.6 38 0.0017 14.8 5.4 37 22-61 11-48 (121)
81 2qhl_A Novel immune-type recep 23.5 29 0.0013 15.6 1.8 37 21-60 9-45 (111)
82 3bx7_C Cytotoxic T-lymphocyte- 23.4 38 0.0017 14.8 5.3 88 23-111 11-114 (124)
83 1n4x_H Immunoglobulin heavy ch 23.4 38 0.0017 14.8 3.5 39 20-61 9-48 (120)
84 2jjs_C Leukocyte surface antig 23.2 39 0.0017 14.8 3.4 39 23-62 13-51 (127)
85 1nfd_E H57 FAB; complex (immun 23.1 39 0.0017 14.7 2.5 37 21-62 9-46 (212)
86 2ak4_D SB27 T cell receptor al 23.1 39 0.0017 14.7 3.9 46 13-61 5-50 (211)
87 2eny_A Obscurin; beta-sandwich 23.0 39 0.0017 14.7 5.3 76 11-100 8-85 (104)
88 1c5d_H Monoclonal antibody aga 22.7 40 0.0018 14.7 3.4 87 23-112 12-116 (215)
89 3idg_B 2F5 FAB heavy chain; HI 22.6 40 0.0018 14.7 4.3 39 22-61 11-50 (237)
90 2bv4_A Lectin CV-IIL; mannose; 22.5 27 0.0012 15.8 1.4 23 77-101 11-34 (113)
91 1fhg_A Telokin; immunoglobulin 22.4 40 0.0018 14.7 8.4 75 18-107 48-125 (154)
92 2ptt_A CD48 antigen; CD244, CD 22.2 41 0.0018 14.6 6.2 86 22-111 14-104 (110)
93 2cqv_A MLCK, myosin light chai 21.7 42 0.0018 14.6 8.0 76 16-106 12-89 (114)
94 1moe_A Anti-CEA MAB T84.66; an 21.3 42 0.0019 14.5 3.6 36 21-59 129-165 (240)
95 1eeq_A Kappa-4 immunoglobulin 21.3 42 0.0019 14.5 4.3 44 18-61 8-53 (114)
96 3eow_R Poliovirus receptor; im 20.5 44 0.002 14.4 7.3 38 18-55 6-43 (221)
No 1
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=78.43 E-value=3.8 Score=20.97 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=56.3
Q ss_pred ECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCCEEEEEEECC
Q ss_conf 11686367722221204897389998870088604756899888658967988589836725456637875399998136
Q T0577 8 QEYPFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYYTSQ 87 (116)
Q Consensus 8 q~YpF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~~~FrLYYtS~ 87 (116)
++.|..+..-+-.-.+..|++++++|... |.- -.|.|+ .||..+.+++++-+.... |.-++.
T Consensus 6 ~~~P~~~~~~~~~~~v~~G~~~~l~C~~~--g~p----p~i~W~----------k~g~~l~~~~~~~~~~~~--L~I~~~ 67 (95)
T 2ckn_A 6 QAQPWGVPVEVESLLVHPGDLLQLRCRLR--DDV----QSINWL----------RDGVQLVESNRTRITGEE--VEVRDS 67 (95)
T ss_dssp SSCSCCBTTBBCCEEECTTSCEEEECCEE--SSC----CEEEEE----------BTTBCCCCCSSEEECSSE--EEESSC
T ss_pred CCCCCCCEECCCEEEECCCCEEEEEEECC--CCC----CEEEEE----------EEEECCCEEEEEEEEEEE--EEEEEC
T ss_conf 55699435637628994989699998778--989----889998----------621001101467610010--188300
Q ss_pred CCCCCCEEEEEEEECCCCEE
Q ss_conf 88756327999982899659
Q T0577 88 SDKEAQTIDLYFEDNWGNLQ 107 (116)
Q Consensus 88 S~~~~qtidv~v~Dnfgq~~ 107 (116)
...|+-.....+....|...
T Consensus 68 ~~~D~G~Y~C~a~N~~G~~~ 87 (95)
T 2ckn_A 68 IPADSGLYACVTSSPSGSDT 87 (95)
T ss_dssp CGGGSEEEEEEEEETTEEEE
T ss_pred CCCCCEEEEEEEECCCCEEE
T ss_conf 10111269999984898799
No 2
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R
Probab=74.47 E-value=4.2 Score=20.74 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=29.4
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCE
Q ss_conf 367722221204897389998870088604756899888658967
Q T0577 13 TVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKG 57 (116)
Q Consensus 13 ~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G 57 (116)
.|..+|-.-....|++|+|.|++.....+ +-.-|.|..|++
T Consensus 6 ~~~~~P~~l~~~~G~~vtL~C~~s~~~~~----~~~WyrQ~~g~~ 46 (128)
T 1nez_G 6 ELRIFPKKMDAELGQKVDLVCEVLGSVSQ----GCSWLFQNSSSK 46 (128)
T ss_dssp EEEEESSCEEECTTCCEEEEEEEESCCSS----CEEEEEEESSCS
T ss_pred EEEECCCEEEECCCCCEEEEEEECCCCCC----CEEEEEECCCCC
T ss_conf 79990998996899979999996377389----639998786877
No 3
>3bis_A Programmed cell death 1 ligand 1; CO-stimulation, immunoglobulin-like beta-sandwich, T cell, B cell, programmed death, immune system, transmembrane; 2.64A {Homo sapiens} PDB: 3bik_A 3fn3_A
Probab=73.05 E-value=5.3 Score=20.09 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=56.1
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCC-----------CCCCE
Q ss_conf 8636772222120489738999887008860475689988865896798858983672545663-----------78753
Q T0577 11 PFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYL-----------LNEWK 79 (116)
Q Consensus 11 pF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~yp-----------L~~~~ 79 (116)
.|+|+..+-.-.+..|++|.|+|.+..........+.+.++. +|+..+.+..+.....+..-. +....
T Consensus 1 ~ftv~~p~~~~~v~~G~~vtL~C~~~~~~~~~~~~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 79 (222)
T 3bis_A 1 AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEM-EDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN 79 (222)
T ss_dssp -CCCBCSCSEEEEETTSCEEEEEECCCCSSCCTTSCEEEEEE-TTEEEEEEETTEECGGGSCTTCSTTEEECHHHHTTTE
T ss_pred CEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEEE-CCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 989998898789972886999999547999875507999997-9960078852520033237651473798620234875
Q ss_pred EEEEEECCCCCCCCEEEEEEEECCCCEEE
Q ss_conf 99998136887563279999828996599
Q T0577 80 FRLYYTSQSDKEAQTIDLYFEDNWGNLQQ 108 (116)
Q Consensus 80 FrLYYtS~S~~~~qtidv~v~Dnfgq~~q 108 (116)
+.|--.+....|+-+....+....+....
T Consensus 80 ~sl~i~nv~~~D~G~Y~C~v~~~~~~~~~ 108 (222)
T 3bis_A 80 AALQITDVKLQDAGVYRCMISYGGADYKR 108 (222)
T ss_dssp EEEEESSCCGGGCEEEEEEEESSSEEEEE
T ss_pred EEEEEECCCHHHCEEEEECCCCCCCCEEE
T ss_conf 89999525669976898504348752025
No 4
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=67.01 E-value=7.2 Score=19.29 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=49.2
Q ss_pred CCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE-ECCCCEECCCCCC------------CC
Q ss_conf 1686367722221204897389998870088604756899888658967988-5898367254566------------37
Q T0577 9 EYPFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLK-MEDGTVLKPNDRY------------LL 75 (116)
Q Consensus 9 ~YpF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~-~~dg~~l~pnD~y------------pL 75 (116)
+--|+|..=+-+=....|++|.+.|.+....+ ...+.|.+++-...+.+. ..++.... .... .+
T Consensus 4 s~~~~V~~P~~~V~~~~G~~v~L~C~~~~~~~--~~~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~~~~~~R~~~~~~~~ 80 (139)
T 1pko_A 4 SGQFRVIGPGHPIRALVGDEAELPCRISPGKN--ATGMEVGWYRSPFSRVVHLYRNGKDQD-AEQAPEYRGRTELLKESI 80 (139)
T ss_dssp -CCCEEECCSSCEEEETTSCEEEEEEEESCCC--CTTSEEEEEEC--CCEEEEEETTEECG-GGSCSTTTTSEEEECTTG
T ss_pred CEEEEEECCCCCEEEECCCCEEEEEEEECCCC--CCCEEEEEEEECCCCEEEEEEECCCCC-CCCCCCCCEEEEECCCCC
T ss_conf 40489989489889986997999999858889--983089999977885689987155656-410665311578704777
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEEECCCC
Q ss_conf 875399998136887563279999828996
Q T0577 76 NEWKFRLYYTSQSDKEAQTIDLYFEDNWGN 105 (116)
Q Consensus 76 ~~~~FrLYYtS~S~~~~qtidv~v~Dnfgq 105 (116)
....+.|--.+....|+-...-.|.+..|.
T Consensus 81 ~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~ 110 (139)
T 1pko_A 81 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQ 110 (139)
T ss_dssp GGTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCCEEEEEEEEECHHHCEEEEEEEEECCCE
T ss_conf 587299999387125584999999979956
No 5
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport protein; HET: PLM; 1.55A {Homo sapiens} PDB: 2pwn_A* 1wc8_A* 2cfh_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=64.73 E-value=5.1 Score=20.20 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCCEEEEEECCHHCCCCCEEEEEEEEEEC
Q ss_conf 68636772222120489738999887008
Q T0577 10 YPFTVESMPVADEIAGDETVEIRLEIKPS 38 (116)
Q Consensus 10 YpF~v~tmpv~k~I~~geTvEIRc~L~re 38 (116)
--+.|+++-|+..+..+++-|||.+|+|.
T Consensus 151 vq~~v~~~fv~D~LrGd~~tEirvkl~~~ 179 (200)
T 1sz7_A 151 VQMAVEAKFVQDTLKGDGVTEIRMRFIRR 179 (200)
T ss_dssp TTEEEEEEEEECGGGTCSSEEEEEEEEEE
T ss_pred HEEEEEEEEEEEECCCCCCEEEEEEEEEE
T ss_conf 23789999987422589833999986021
No 6
>2oi9_B V alpha, T cell receptor alpha chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2icw_I 1i9e_A* 2e7l_A 3e3q_D 3e2h_B
Probab=62.79 E-value=5.4 Score=20.06 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.0
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 677222212048973899988700886047568998886589679885
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
|+--|-......|++|.|.|++.-. ...|..-|-|..|+|-..+
T Consensus 3 V~Q~~~~v~v~~G~svtl~C~~~~~----~~~~~~WyrQ~~g~~~~~i 46 (113)
T 2oi9_B 3 VTQPDARVTVSEGASLQLRCKYSYS----ATPYLFWYVQYPRQGPQLL 46 (113)
T ss_dssp EECSCSEEEECTTSCEEECCEEECS----SCCCEEEEEECTTSCCEEE
T ss_pred EECCCCEEEECCCCCEEEEEEEECC----CCCCEEEEEECCCCCCEEE
T ss_conf 7888995999799979999998078----7898899999999984674
No 7
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=62.66 E-value=7.4 Score=19.18 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=29.8
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCC-CEEEEEEEEECCCEEEEE
Q ss_conf 22212048973899988700886047-568998886589679885
Q T0577 18 PVADEIAGDETVEIRLEIKPSGNFIG-TVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 18 pv~k~I~~geTvEIRc~L~reG~y~~-t~Y~IrYfQ~dG~G~L~~ 61 (116)
|.--.+..|++|.|.|.....-.... .-|.--|=|..|++--.+
T Consensus 8 P~sl~~~~G~tvtl~C~~s~s~~~~~~~~~~~WY~Q~~g~~~~~L 52 (113)
T 1dlf_L 8 PLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLL 52 (113)
T ss_dssp CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEE
T ss_pred CCEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEE
T ss_conf 998998999999999995898755898746999981899997499
No 8
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens}
Probab=58.95 E-value=8.2 Score=18.92 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCCEECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCCEEEEE
Q ss_conf 21101168636772222120489738999887008860475689988865896798858983672545663787539999
Q T0577 4 LDIQQEYPFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLY 83 (116)
Q Consensus 4 LdvQq~YpF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~~~FrLY 83 (116)
|.|....|=.+..-+-...+..|+++.+.|... |+=. -.|.|+- ||..+.+++++-+....-.|.
T Consensus 3 l~v~~~~~P~~~~~~~~~~v~~G~~~~l~C~~~--g~P~---p~v~W~k----------~~~~i~~~~~~~~~~~~~~L~ 67 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTAS--GNPP---PQIMWFK----------DNETLVEDSGIVLKDGNRNLT 67 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC---------CCEEEEE----------SSSBCCCBTTEEEETTTTEEE
T ss_pred EEEECCCCCEEECCCCCEEEECCCCEEEEEEEE--EECC---CEEEEEE----------CCCCCCCEEEEEEECCCCEEE
T ss_conf 699817299898889868992799799999998--8179---9999999----------999165602569857971799
Q ss_pred EECCCCCCCCEEEEEEEECCCCEE
Q ss_conf 813688756327999982899659
Q T0577 84 YTSQSDKEAQTIDLYFEDNWGNLQ 107 (116)
Q Consensus 84 YtS~S~~~~qtidv~v~Dnfgq~~ 107 (116)
-++.+..|+-.....+...+|...
T Consensus 68 I~~v~~~D~G~Y~C~a~N~~G~~~ 91 (108)
T 3kvq_A 68 IRRVRKEDEGLYTCQACSVLGCAK 91 (108)
T ss_dssp ECSCCGGGCEEEEEEEC----CEE
T ss_pred ECCCCHHHCEEEEEEEEECCCEEE
T ss_conf 907896659999999998997899
No 9
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=58.52 E-value=10 Score=18.33 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=50.4
Q ss_pred CEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCC-CCCC---CCCEEEEEEECC
Q ss_conf 636772222120489738999887008860475689988865896798858983672545-6637---875399998136
Q T0577 12 FTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPND-RYLL---NEWKFRLYYTSQ 87 (116)
Q Consensus 12 F~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD-~ypL---~~~~FrLYYtS~ 87 (116)
..|+..|....+..|++|.++|... |+.... .|.|+..+|+ .+.+++ ++.. .....+|.-.+.
T Consensus 3 ~~v~i~P~~~~~~~G~~~~l~C~~~--g~~~~~--~v~W~~~~g~---------~~~~~~~~~~~~~~~~~~~~L~i~~~ 69 (191)
T 1epf_A 3 LQVDIVPSQGEISVGESKFFLCQVA--GDAKDK--DISWFSPNGE---------KLSPNQQRISVVWNDDDSSTLTIYNA 69 (191)
T ss_dssp CCEEEESSSEEEETTCCEEEEEEEC--CCSCCC--EEEEECTTSC---------EECCBSSSEEEEEEETTEEEEEECSC
T ss_pred EEEEEECCCEEEECCCCEEEEEEEE--CCCCCC--EEEEEECCCE---------ECCCCCCEEEEEEECCCEEEEEECCC
T ss_conf 7999979988995599599999993--689998--8999989999---------93356852999980798489999528
Q ss_pred CCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 88756327999982899659999
Q T0577 88 SDKEAQTIDLYFEDNWGNLQQLT 110 (116)
Q Consensus 88 S~~~~qtidv~v~Dnfgq~~ql~ 110 (116)
+..|+-.....+....|......
T Consensus 70 ~~~d~G~Y~C~~~~~~~~~~~~~ 92 (191)
T 1epf_A 70 NIDDAGIYKCVVTAEDGTQSEAT 92 (191)
T ss_dssp CGGGCEEEEEEEEETTTEEEEEE
T ss_pred CHHHCEEEEEEEECCCCCEEEEE
T ss_conf 97999299999972779525469
No 10
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=57.55 E-value=11 Score=18.23 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=55.4
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 86367722221204897389998870088604756899888658967988589836725456637875399998136887
Q T0577 11 PFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYYTSQSDK 90 (116)
Q Consensus 11 pF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~~~FrLYYtS~S~~ 90 (116)
+++|+ ..-|..+..|++++|+.+++-.|.-...-+.+++. -|| ++....-.. +-|=+...+.+.++..++
T Consensus 18 DL~v~-~~~p~~~~~G~~~~i~v~V~N~G~~~a~~~~V~l~-~dg--~~~~~~ti~-----L~pG~s~~v~~~~~~~~~- 87 (127)
T 3idu_A 18 DLTVE-IKGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVY-ING--TLYKNWTVS-----LGPKEEKVLTFNWTPTQE- 87 (127)
T ss_dssp CEEEE-EESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEE-ETT--EEEEEEEEE-----ECTTCEEEEEEEECCSSC-
T ss_pred CEEEE-ECCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEE-ECC--EEEEEEEEC-----CCCCCEEEEEEEEEECCC-
T ss_conf 98999-25788534898899999999999755563799999-899--995248864-----599988999987881458-
Q ss_pred CCCEEEEEEEECCC
Q ss_conf 56327999982899
Q T0577 91 EAQTIDLYFEDNWG 104 (116)
Q Consensus 91 ~~qtidv~v~Dnfg 104 (116)
-..+|.+++ |.-.
T Consensus 88 G~~~i~~~V-D~~n 100 (127)
T 3idu_A 88 GMYRINATV-DEEN 100 (127)
T ss_dssp EEEEEEEEE-STTC
T ss_pred CCEEEEEEE-CCCC
T ss_conf 838899999-7899
No 11
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=55.51 E-value=11 Score=18.02 Aligned_cols=42 Identities=21% Similarity=0.441 Sum_probs=28.7
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCC
Q ss_conf 8636772222120489738999887008860475689988865896
Q T0577 11 PFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGK 56 (116)
Q Consensus 11 pF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~ 56 (116)
++.|+.-|....|..|++|.++|.+. |+-..+ .|.|+..+|.
T Consensus 2 ~~~v~~~P~~~~v~~G~~~~l~C~v~--g~~~~~--~v~W~~~~~~ 43 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVA--GDAKDK--DISWFSPNGE 43 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEES--SCCSCC--EEEEECTTSC
T ss_pred CEEEEEECCCEEECCCCEEEEEEEEE--CCCCCC--EEEEEECCCE
T ss_conf 37999939977994699099999992--578998--8999989998
No 12
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=53.51 E-value=12 Score=17.82 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=27.5
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEE
Q ss_conf 677222212048973899988700886047568998886589679
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGS 58 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~ 58 (116)
|+=-|.-.....||+|.|+|... +.. .|.--|-|..|++-
T Consensus 4 VtQ~P~~~~~~~G~~vtL~C~~s--~~~---~~~~WYrQ~~g~~~ 43 (121)
T 2oi9_C 4 VTQSPRNKVAVTGEKVTLSCNQT--NNH---NNMYWYRQDTGHEL 43 (121)
T ss_dssp EEEECSEEEEETTCCEEEEEEES--SCC---SEEEEEEESSSSCC
T ss_pred EEEECCEEEECCCCCEEEEEEEC--CCC---CCEEEEEECCCCCC
T ss_conf 89649959987999899999986--995---86799999689833
No 13
>3c60_A TCR YAE62 alpha chain; TCR-PMHC complex; 3.05A {Mus musculus}
Probab=53.38 E-value=6.1 Score=19.74 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=28.6
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEE
Q ss_conf 6772222120489738999887008860475689988865896798
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSL 59 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L 59 (116)
|.-.|-.-.+..|++|.|+|.....+.+ |-.=|-|..|+|-.
T Consensus 3 VtQ~~~~~~v~~G~~vtL~C~~s~~~~~----~~~WYrQ~pg~~p~ 44 (199)
T 3c60_A 3 VTQMQGQVTLSENDFLFINCTYSTTGYP----TLFWYVQYSGEGPQ 44 (199)
T ss_dssp CCCCCCEEEEETTEEEEECCBCBCSSCC----EEEEEEECTTSCCE
T ss_pred EEECCCCEEECCCCCEEEEEEECCCCCC----CEEEEEECCCCCCC
T ss_conf 5901980898799999999995488778----88999979999872
No 14
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=52.36 E-value=13 Score=17.71 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=40.7
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEE------EEE--CCCC-EEC----CCCCCCC---CC
Q ss_conf 677222212048973899988700886047568998886589679------885--8983-672----5456637---87
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGS------LKM--EDGT-VLK----PNDRYLL---NE 77 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~------L~~--~dg~-~l~----pnD~ypL---~~ 77 (116)
+...|-.-....|++|.|.|.+....++ +--=|.|..|++. +.. .... .+- .+.++.. ..
T Consensus 12 ~~~~P~~~~~~~G~svtL~C~~~~~~~~----~v~WyrQ~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 87 (166)
T 3dmm_C 12 LRIFPKKMDAELGQKVDLVCEVLGSVSQ----GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN 87 (166)
T ss_dssp EEEECSCBCCCTTCCEEEEEEEESSSCC----EEEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECSTT
T ss_pred EEECCCEEEECCCCCEEEEEEECCCCCC----CEEEEEECCCCCCCCCEEEEEEEEECCCCEECCCCCCCCEEEEECCCC
T ss_conf 8972995798699979999996678899----789999788997647379998641026534056776665587899989
Q ss_pred CEEEEEEECCCCCCC
Q ss_conf 539999813688756
Q T0577 78 WKFRLYYTSQSDKEA 92 (116)
Q Consensus 78 ~~FrLYYtS~S~~~~ 92 (116)
..|+|--++....|+
T Consensus 88 ~~~~L~I~~~~~~Ds 102 (166)
T 3dmm_C 88 NKYVLTLNKFSKENE 102 (166)
T ss_dssp TEEEEEESSCCTTTC
T ss_pred CEEEEEECCCCCCCC
T ss_conf 999999898721779
No 15
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 2q3a_A
Probab=52.36 E-value=13 Score=17.71 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=27.8
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCE
Q ss_conf 67722221204897389998870088604756899888658967
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKG 57 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G 57 (116)
+..=|.......||+|+|.|+.... +... +.--|-|..|++
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~-~~~~--~~~WyrQ~~g~~ 43 (114)
T 2hp4_A 3 FRVSPLDRTWNLGETVELKCQVLLS-NPTS--GASWLFQPRGAA 43 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCS-SCCS--CEEEEEEESSSS
T ss_pred CEECCCCEECCCCCCEEEEEEEECC-CCCC--CEEEEEECCCCC
T ss_conf 0287986882799979999997179-8999--989999899998
No 16
>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius}
Probab=52.33 E-value=13 Score=17.71 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=28.8
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 1204897389998870088604756899888-6589679885
Q T0577 21 DEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKM 61 (116)
Q Consensus 21 k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~ 61 (116)
.-+++||++-|-|+.--...|.-..|.|.++ |+-|||--++
T Consensus 10 ~lvkpg~sl~LsC~~SG~~~~t~s~y~~~WvRQ~PGkglEwl 51 (137)
T 3eak_A 10 GLVQPGGSLRLSCAASGGSEYSYSTFSLGWFRQAPGQGLEAV 51 (137)
T ss_dssp CEECTTCCEEEEEEEESCTTSCGGGSEEEEEEECTTSCEEEE
T ss_pred CEECCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf 359999996898999489974767884788980899874999
No 17
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2vaj_A
Probab=51.89 E-value=13 Score=17.66 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCC--CEEEEEEECCCCCCCCEEEEE
Q ss_conf 120489738999887008860475689988865896798858983672545663787--539999813688756327999
Q T0577 21 DEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNE--WKFRLYYTSQSDKEAQTIDLY 98 (116)
Q Consensus 21 k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~--~~FrLYYtS~S~~~~qtidv~ 98 (116)
-+++.|++|.++|... |.= -.|.||..+| ..+.+.+++-... ..++|.-++.+..++-.....
T Consensus 12 ~~v~~G~~v~L~C~~~--g~p----~~v~W~~~~~---------~~i~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 76 (189)
T 2v44_A 12 VELSVGESKFFTCTAI--GEP----ESIDWYNPQG---------EKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 76 (189)
T ss_dssp EEEETTCCEEEEEEEE--ECC----SEEEEECTTS---------CBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEECCCCEEEEEEEE--EEC----CCEEEEECCC---------EECCCCCCEEEEECCCEEEEEECCCCHHHCEEEEEE
T ss_conf 7990899999999990--047----7889998999---------899889969999769989999986897899899999
Q ss_pred EEECCCCEEEEE
Q ss_conf 982899659999
Q T0577 99 FEDNWGNLQQLT 110 (116)
Q Consensus 99 v~Dnfgq~~ql~ 110 (116)
+.+..|+...-+
T Consensus 77 ~~~~~g~~~~~~ 88 (189)
T 2v44_A 77 ATDAKGQTQEAT 88 (189)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCCEEEEE
T ss_conf 710778601246
No 18
>1ol0_A Immunoglobulin G; camelised variable heavy domain; 1.8A {Homo sapiens} SCOP: b.1.1.1 PDB: 1igm_H 2uzi_H* 1dql_H 2vh5_H* 1ohq_A 1fgv_H 3cfi_C
Probab=51.79 E-value=11 Score=18.12 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=27.7
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 21204897389998870088604756899888-6589679885
Q T0577 20 ADEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKM 61 (116)
Q Consensus 20 ~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~ 61 (116)
|.-+++||++-|.|+.- ...+. .|.|.++ |+-|||-.++
T Consensus 9 ~~~~kpg~sl~LsC~~S-G~~~~--~~~~~WvRQ~PGkglEwv 48 (121)
T 1ol0_A 9 GGLVQPGGSLRLSCAAS-GFTFS--SYAMSWFRQAPGKEREIV 48 (121)
T ss_dssp CEEECTTCCEEEEEEEE-SSCGG--GSCEEEEEECTTSCCEEE
T ss_pred CCEECCCCCEEEEEEEE-CCCHH--CCCEEEEEECCCCCEEEE
T ss_conf 82699999949989986-97813--096788980899875999
No 19
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=51.19 E-value=13 Score=17.59 Aligned_cols=92 Identities=12% Similarity=0.220 Sum_probs=60.6
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEE----------CCCCCCCEEEEEEEE--ECCCEEEEECCCCEECCCCCCCCCCC
Q ss_conf 863677222212048973899988700----------886047568998886--58967988589836725456637875
Q T0577 11 PFTVESMPVADEIAGDETVEIRLEIKP----------SGNFIGTVYTLRYFQ--PDGKGSLKMEDGTVLKPNDRYLLNEW 78 (116)
Q Consensus 11 pF~v~tmpv~k~I~~geTvEIRc~L~r----------eG~y~~t~Y~IrYfQ--~dG~G~L~~~dg~~l~pnD~ypL~~~ 78 (116)
||.+..=.-|++.+.|+.+++|+-+.- .|.+-.+ .+|..+. .+|+-.+.++-++..-.| -
T Consensus 1 p~r~~~r~~p~~~~~G~v~~vk~li~HPMeTGl~~D~~g~~IPa-~~I~~v~v~~ng~~v~~~~~~~svS~N-------P 72 (107)
T 1v8h_A 1 PFRTIARLNPAKPKAGEEFRLQVVAQHPNEPGTRRDAEGKLIPA-KYINLVEVYFEGEKVAEARPGPSTSAN-------P 72 (107)
T ss_dssp CCCEEEEEESSSCCTTCEEEEEEEECCCCBCSCCBCTTSCBCCC-BCEEEEEEEETTEEEEEECCCSSCCSS-------C
T ss_pred CCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCH-HHEEEEEEEECCEEEEEEECCCCCCCC-------C
T ss_conf 91389986777668998599999998878422024888899157-813899999999999999817852379-------7
Q ss_pred EEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 39999813688756327999982899659999863
Q T0577 79 KFRLYYTSQSDKEAQTIDLYFEDNWGNLQQLTYDF 113 (116)
Q Consensus 79 ~FrLYYtS~S~~~~qtidv~v~Dnfgq~~ql~f~F 113 (116)
.|++++....+ -++.+...||.|+..+-+..-
T Consensus 73 ~~~F~~~~~~~---g~l~v~~~Dn~G~~~~~~~~i 104 (107)
T 1v8h_A 73 LYAFKFKAEKA---GTFTIKLKDTDGDTGEASVKL 104 (107)
T ss_dssp EEEEEEECCSC---EEEEEEEEETTSCEEEEEEEE
T ss_pred EEEEEECCCCC---CEEEEEEEECCCCEEEEEEEE
T ss_conf 59999726988---469999998989889999999
No 20
>1ub6_H Antibody 19G2, alpha chain; antibody fluorscence dynamics, SERA ligand, immune system; 2.12A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1lo4_H
Probab=50.19 E-value=9.1 Score=18.66 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=24.3
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEE
Q ss_conf 204897389998870088604756899888-65896798
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSL 59 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L 59 (116)
-+++|+++-|.|+.- | |.-..|.|-++ |+-|+|--
T Consensus 10 ~v~pg~s~~lsC~~S--g-~~~~~~~~~W~rQ~pG~~le 45 (208)
T 1ub6_H 10 LVKPGGSLKLSCTAS--G-ITFSRYIMSWVRQIPEKRLE 45 (208)
T ss_dssp EECTTCCEEEEEEEE--S-CCGGGSCEEEEEECTTCCCE
T ss_pred EECCCCCEEEEEEEE--C-CCHHCCCEEEEEECCCCCEE
T ss_conf 389999949989995--9-78230948999918999837
No 21
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin- like beta-sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Probab=49.32 E-value=14 Score=17.41 Aligned_cols=43 Identities=2% Similarity=-0.085 Sum_probs=29.5
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEE
Q ss_conf 6772222120489738999887008860475689988865896798
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSL 59 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L 59 (116)
|+.-|-.-....|++|.|.|...... ...|..=|-|..|++--
T Consensus 12 vTqsP~~l~v~~G~svtL~C~~s~~~---~~~~~~WYrq~~g~~~~ 54 (134)
T 3bik_B 12 LTFYPAWLTVSEGANATFTCSLSNWS---EDLMLNWNRLSPSNQTE 54 (134)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCC---TTCEEEEEEECTTCCEE
T ss_pred EEECCCEEEECCCCCEEEEEEECCCC---CCCCEEEEEECCCCCCC
T ss_conf 67987338987999999999975887---89839999989999984
No 22
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=48.70 E-value=15 Score=17.35 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=29.8
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 677222212048973899988700886047568998886589679885
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
|+--|-.-.+..|++|.|+|.....+. .|..-|=|..|++-..+
T Consensus 3 V~Q~p~~l~~~~G~~vtl~C~~s~s~~----~~~~WYrQ~pg~~p~~l 46 (112)
T 2z35_A 3 VTQTGGQVALSEEDFLTIHCNYSASGY----PALFWYVQYPGEGPQFL 46 (112)
T ss_dssp EECSCSEEEEETTCCEEECCEEECSSC----CEEEEEEECTTSCCEEE
T ss_pred EEECCCCEEECCCCCEEEEEEECCCCC----CCEEEEEECCCCCCEEE
T ss_conf 880798189889999999999648988----99899998899995886
No 23
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=47.44 E-value=15 Score=17.23 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=51.5
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCC--CEEEEEEECCCCCCCCE
Q ss_conf 2222120489738999887008860475689988865896798858983672545663787--53999981368875632
Q T0577 17 MPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNE--WKFRLYYTSQSDKEAQT 94 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~--~~FrLYYtS~S~~~~qt 94 (116)
-|-...+..|++|.+.|.+. |+=......|.|+.-+ +..+...++..+..++.+-... ..++|.-.+....|+-.
T Consensus 13 ~p~~~~v~~G~~v~l~C~v~--g~P~~~~p~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 89 (126)
T 2dav_A 13 KPQGGTVKVGEDITFIAKVK--AEDLLRKPTIKWFKGK-WMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN 89 (126)
T ss_dssp CCCCCEEETTCCEEEEEEEE--CCCSSSCCEEEEEESS-SCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred CCCCEEEECCCEEEEEEEEC--CCCCCCCCEEEEEEEE-CEEEECCCCCEEEEEEEEEEEECCCEEEEEECCCCHHHCEE
T ss_conf 79739996999999999877--7776889989999742-10100268822565222567760688999991268766929
Q ss_pred EEEEEEECCCCE
Q ss_conf 799998289965
Q T0577 95 IDLYFEDNWGNL 106 (116)
Q Consensus 95 idv~v~Dnfgq~ 106 (116)
....+...+|..
T Consensus 90 Y~C~a~N~~G~~ 101 (126)
T 2dav_A 90 YRCEVTYKDKFD 101 (126)
T ss_dssp EEEEEECSSCEE
T ss_pred EEEEEEECCCEE
T ss_conf 999999799989
No 24
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembrane, repeat, signal; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=47.14 E-value=11 Score=18.26 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=13.6
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEE
Q ss_conf 8636772222120489738999887
Q T0577 11 PFTVESMPVADEIAGDETVEIRLEI 35 (116)
Q Consensus 11 pF~v~tmpv~k~I~~geTvEIRc~L 35 (116)
.|.|+..|-.-.+..|++|.++|..
T Consensus 2 ~f~v~v~P~~~~V~~G~sv~L~Cs~ 26 (192)
T 1zxq_A 2 VFEVHVRPKKLAVEPKGSLEVNCST 26 (192)
T ss_dssp CCCEEEESSEEEECTTEEEEEEEEE
T ss_pred CEEEEEECCCEEECCCCCEEEEEEC
T ss_conf 4899985897599889979999997
No 25
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3aaz_A 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* 1etz_H* ...
Probab=46.81 E-value=16 Score=17.20 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=27.5
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEE
Q ss_conf 21204897389998870088604756899888-658967988
Q T0577 20 ADEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLK 60 (116)
Q Consensus 20 ~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~ 60 (116)
+.-+.+|++|-|-|+. .+..+....|.|.++ |+-|+|--+
T Consensus 9 ~~lv~pG~svtlsC~~-SG~s~~~s~~~~~WyrQ~pGk~le~ 49 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGLEW 49 (228)
T ss_dssp CSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCCEE
T ss_pred CCEECCCCCEEEEEEE-ECCEECCCCCEEEEEEECCCCCEEE
T ss_conf 8259999995998999-8850046882389999699997599
No 26
>1qgc_4 Protein (inmunoglobuline); virus-antibody complex, icosahedral virus, virus/immune system complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=45.45 E-value=17 Score=17.04 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=21.4
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCE
Q ss_conf 1204897389998870088604756899888-658967
Q T0577 21 DEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKG 57 (116)
Q Consensus 21 k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G 57 (116)
...++||+|-|.|+.-. +.+...-|.|.++ |..|+|
T Consensus 11 ~~~~~G~t~tl~C~~S~-~~~~~~~~~~~WyrQ~pG~~ 47 (438)
T 1qgc_4 11 LAVSLGQRATISCRASE-SVDSSGHSFMHWYQQKPGQP 47 (438)
T ss_dssp EEECTTSCEEEEEEESS-CCEETTEECEEEEEECTTSC
T ss_pred EEECCCCCEEEEEECCC-CCCCCCCEEEEEEEECCCCC
T ss_conf 99899999999998288-82689971389999798999
No 27
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.31 E-value=17 Score=16.93 Aligned_cols=79 Identities=10% Similarity=0.149 Sum_probs=51.6
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCC--CEEEEEEECCC
Q ss_conf 8636772222120489738999887008860475689988865896798858983672545663787--53999981368
Q T0577 11 PFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNE--WKFRLYYTSQS 88 (116)
Q Consensus 11 pF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~--~~FrLYYtS~S 88 (116)
|..+..-|-.-.+..|++|.+.|++. |. ...|.|+. ||..+.++++|-+.. ...+|--.+..
T Consensus 8 ~~~~~~~l~d~~v~~G~~~~l~C~v~--~~----~~~v~W~~----------~g~~l~~~~~~~~~~~~~~~~L~I~~~~ 71 (106)
T 2dlt_A 8 QLEVLQDIADLTVKAAEQAVFKCEVS--DE----KVTGKWYK----------NGVEVRPSKRITISHVGRFHKLVIDDVR 71 (106)
T ss_dssp CCCEEECCCCEEEESSCCEECCCEES--CS----SCEEEEEE----------SSCBCCCCSSCEEEEETTEEEEEESSCC
T ss_pred CEEEEECCCCEEEECCCEEEEEEECC--CC----CCEEEEEE----------EEECCCEEEEEEEECCCCEEEEEEECCC
T ss_conf 92999568658990899899998723--58----98199998----------6401100111254111233799830342
Q ss_pred CCCCCEEEEEEEECCCC
Q ss_conf 87563279999828996
Q T0577 89 DKEAQTIDLYFEDNWGN 105 (116)
Q Consensus 89 ~~~~qtidv~v~Dnfgq 105 (116)
..|+-...+.+.+..|.
T Consensus 72 ~~D~G~Y~c~a~n~~~~ 88 (106)
T 2dlt_A 72 PEDEGDYTFVPDGYALS 88 (106)
T ss_dssp TTTCSCEEEEEETSCCC
T ss_pred CCCCEEEEEEEECCEEE
T ss_conf 21458999999663099
No 28
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglobulin domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_A 1npu_A
Probab=43.59 E-value=18 Score=16.87 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=29.6
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEE
Q ss_conf 3677222212048973899988700886047568998-88658967988
Q T0577 13 TVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLR-YFQPDGKGSLK 60 (116)
Q Consensus 13 ~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~Ir-YfQ~dG~G~L~ 60 (116)
+|..-|-.-....|++|.|.|.... ... .+.|. |-|..|++.-.
T Consensus 1 svtqsP~~l~v~~G~~vtL~C~~s~--~~~--~~~~~Wyrq~~g~~~~~ 45 (117)
T 3bp6_A 1 SLTFYPAWLTVSEGANATFTCSLSN--WSE--DLMLNWNRLSPSNQTEK 45 (117)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESS--CCT--TCEEEEEEECTTCCEEE
T ss_pred CCEECCCEEEECCCCCEEEEEEEEC--CCC--CCEEEEEEECCCCCCEE
T ss_conf 9658898589889999999999744--788--76479999899998779
No 29
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=42.72 E-value=18 Score=16.78 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 1204897389998870088604756899888-6589679885
Q T0577 21 DEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKM 61 (116)
Q Consensus 21 k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~ 61 (116)
.-.++|||+-|.|+. ....+. .|.|-++ |.-|||-.+|
T Consensus 10 ~~v~pG~sl~lsC~~-Sg~~~s--sy~~~WyrQ~pGk~le~~ 48 (223)
T 1dee_B 10 GVVQPGKSLRLSCAA-SGFTFS--GYGMHWVRQAPGKGLEWV 48 (223)
T ss_dssp CEECTTCCEEEEEEE-ESSCGG--GSCEEEEEECTTSCEEEE
T ss_pred CEECCCCCEEEEEEE-ECCCHH--HCCEEEEEECCCCCEEEE
T ss_conf 159999993999999-598856--195899983899977999
No 30
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.62 E-value=18 Score=16.77 Aligned_cols=74 Identities=8% Similarity=0.151 Sum_probs=48.6
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEE
Q ss_conf 21204897389998870088604756899888658967988589836725456637875399998136887563279999
Q T0577 20 ADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYYTSQSDKEAQTIDLYF 99 (116)
Q Consensus 20 ~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~~~FrLYYtS~S~~~~qtidv~v 99 (116)
...+..|+++.++|.+. |.- -+|.|+ .||..+.+++++-+... +|.-.+....|+-.....+
T Consensus 12 ~~~v~~G~~~~l~C~~~--g~p----~~v~W~----------k~g~~l~~~~r~~~~~~--~L~I~~v~~~D~G~Y~C~a 73 (99)
T 2cr3_A 12 SFLVHPGDLLQLRCRLR--DDV----QSINWL----------RDGVQLAESNRTRITGE--EVEVQDSVPADSGLYACVT 73 (99)
T ss_dssp ECCBCTTSCEEEECCCC--SSC----CEEEEE----------ESSSBCCCCSSEEECSS--EEEETTCCTTTCEEEEEEE
T ss_pred EEEECCCCEEEEEEECC--CCC----CEEEEE----------EEEEECEEEEEECCCCC--EEEECCCCCCCCEEEEEEE
T ss_conf 69990999499999898--989----879998----------63100000000001121--1272546703152789999
Q ss_pred EECCCCEEEEEEE
Q ss_conf 8289965999986
Q T0577 100 EDNWGNLQQLTYD 112 (116)
Q Consensus 100 ~Dnfgq~~ql~f~ 112 (116)
....|.. ..++.
T Consensus 74 ~n~~g~~-~~~~~ 85 (99)
T 2cr3_A 74 SSPSGSD-TTYFS 85 (99)
T ss_dssp EETTEEE-EEEEE
T ss_pred EECCCEE-EEEEE
T ss_conf 9089879-99999
No 31
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=42.51 E-value=18 Score=16.83 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=14.4
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEE-EEEEECCCE
Q ss_conf 04897389998870088604756899-888658967
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTL-RYFQPDGKG 57 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~I-rYfQ~dG~G 57 (116)
..+|++|.|+|..-...........| -|=|..|++
T Consensus 27 vs~G~tVtL~C~~S~s~~~~~~~~yl~WYqQ~pG~~ 62 (268)
T 1x9q_A 27 VSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQS 62 (268)
T ss_dssp CCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSC
T ss_pred ECCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 899999998997688746578953179987789999
No 32
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D
Probab=42.37 E-value=18 Score=16.75 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=26.5
Q ss_pred CCEECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 11011686367722221204897389998870088604756899888658967988
Q T0577 5 DIQQEYPFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLK 60 (116)
Q Consensus 5 dvQq~YpF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~ 60 (116)
.||| |-+|.. ..|++|.|+|...-.+. -|.-=|-|..|+|-..
T Consensus 2 ~v~Q--P~sv~~-------~~G~svtL~C~~~~~~~----~~~~WYrQ~~g~~p~~ 44 (200)
T 2nw2_A 2 NIDQ--PTEMTA-------TEGAIVQINCTYQTSGF----NGLFWYQQHAGEAPTF 44 (200)
T ss_dssp CCBC--CSEEEE-------ETTCCEEEEEECCCSSC----CCEEEEEECTTSCCEE
T ss_pred CEEC--CCEEEE-------CCCCCEEEEEEECCCCC----CCEEEEEECCCCCCEE
T ss_conf 6638--956999-------59999998999778884----8889999999998455
No 33
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprotein, transmembrane; HET: NAG; 2.0A {Homo sapiens}
Probab=42.17 E-value=19 Score=16.73 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=14.6
Q ss_pred EEEEEECCHHCCCCCEEEEEEEE
Q ss_conf 36772222120489738999887
Q T0577 13 TVESMPVADEIAGDETVEIRLEI 35 (116)
Q Consensus 13 ~v~tmpv~k~I~~geTvEIRc~L 35 (116)
+....|-|.+++.|++|.|+|..
T Consensus 4 ~~~~~~~p~~~~~G~~v~l~C~~ 26 (189)
T 2v5t_A 4 TFREVVSPQEFKQGEDAEVVCRV 26 (189)
T ss_dssp EEEECCSSEEEETTSCEEECCEE
T ss_pred EEEECCCCCEECCCCCEEEEEEE
T ss_conf 99833998398999989999999
No 34
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone, stimulation of production of progesterone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=41.99 E-value=19 Score=16.71 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=25.4
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 2221204897389998870088604756899888658967988
Q T0577 18 PVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLK 60 (116)
Q Consensus 18 pv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~ 60 (116)
|---..+.|++|.|.|...-..+ .|..=|-|..|++-..
T Consensus 8 P~s~~~~~G~svtl~C~~s~~~~----~~~~WYrq~~g~~p~~ 46 (108)
T 1qfw_M 8 PKSMSMSVGERVTLSCKASETVD----SFVSWYQQKPEQSPKL 46 (108)
T ss_dssp CSCEECCTTCCEEEEEEESSCCC----SCEEEEEECTTSCCEE
T ss_pred CCEEEECCCCCEEEEEEECCCCC----CCEEEEEECCCCCCEE
T ss_conf 99999899999999999199998----8889999389998789
No 35
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Probab=41.30 E-value=19 Score=16.65 Aligned_cols=41 Identities=7% Similarity=0.026 Sum_probs=28.0
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 222212048973899988700886047568998886589679885
Q T0577 17 MPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
=|-.-.+..|++|.|+|.....+. .|---|-|..|+|-..+
T Consensus 7 ~p~~v~v~~G~svtl~C~~~~~~~----~~~~WYrQ~~g~~p~~l 47 (194)
T 1lp9_E 7 TEGLVTLTEGLPVMLNCTYQSTYS----PFLFWYVQHLNEAPKLL 47 (194)
T ss_dssp CCSEEEEETTSCEEECEEEECSSS----CCEEEEEECTTSCCEEE
T ss_pred CCCEEEECCCCCEEEEEEEECCCC----CCEEEEEECCCCCCEEE
T ss_conf 799189889999999999736887----86899999999998999
No 36
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 1d9k_B* 2aq3_A 3byy_A 3byt_A 3bzd_A 1u3h_B ...
Probab=40.20 E-value=20 Score=16.54 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=26.7
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEE-EEECCCEEE
Q ss_conf 6772222120489738999887008860475689988-865896798
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRY-FQPDGKGSL 59 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrY-fQ~dG~G~L 59 (116)
|+-.|----...|++|.|+|.... +. |.|.+ =|..|+|--
T Consensus 2 VtQ~P~~~~~~~G~svtL~C~~~~-~~-----~~v~WyrQ~pG~~l~ 42 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQTN-NH-----NNMYWYRQDTGHGLR 42 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEESS-CC-----SEEEEEEECTTSCEE
T ss_pred CEECCCEEEECCCCCEEEEEEECC-CC-----CEEEEEEECCCCCEE
T ss_conf 588898689878997999999859-97-----629999999999859
No 37
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=38.52 E-value=6.2 Score=19.67 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=10.4
Q ss_pred ECCHHCCCCCEEEEEEE
Q ss_conf 22212048973899988
Q T0577 18 PVADEIAGDETVEIRLE 34 (116)
Q Consensus 18 pv~k~I~~geTvEIRc~ 34 (116)
|-.=.|..|++|.|+++
T Consensus 37 P~~i~V~~G~~V~~~~~ 53 (112)
T 1iby_A 37 PETLVVKKGDAVKVVVE 53 (112)
T ss_dssp SCEEEEETTCEEEEEEE
T ss_pred CCEEEECCCCEEEEEEE
T ss_conf 99899879999999999
No 38
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=37.80 E-value=22 Score=16.31 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=52.0
Q ss_pred EEECCHH--CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC---CCEEEEEEECCCCC
Q ss_conf 7222212--048973899988700886047568998886589679885898367254566378---75399998136887
Q T0577 16 SMPVADE--IAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLN---EWKFRLYYTSQSDK 90 (116)
Q Consensus 16 tmpv~k~--I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~---~~~FrLYYtS~S~~ 90 (116)
+.|+++. +..|++|.++|.+.-. ....|.|+-+++ .+...++..++.+.++-+. ...+.|.-.+....
T Consensus 41 ~~p~~~~~tv~~G~~v~L~C~v~~~-----~~~~v~W~k~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~ 113 (145)
T 1z9m_A 41 SQPWTSDETVVAGGTVVLKCQVKDH-----EDSSLQWSNPAQ--QTLYFGEKRALRDNRIQLVTSTPHELSISISNVALA 113 (145)
T ss_dssp TCCBCCCEEEETTSCEEEEEECSCC-----TTCCEEEECTTC--CEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGG
T ss_pred CCCCCCCEEEECCCCEEEEEEECCC-----CCCEEEEECCCC--CEECCCCCCCCCCCCEEEEECCCCEEEEEEEECCCC
T ss_conf 7787866699599829999996279-----987699986886--400146421014564787656899799999432185
Q ss_pred CCCEEEEEEEECCCCEE
Q ss_conf 56327999982899659
Q T0577 91 EAQTIDLYFEDNWGNLQ 107 (116)
Q Consensus 91 ~~qtidv~v~Dnfgq~~ 107 (116)
|+-...--+..+-++..
T Consensus 114 D~G~Y~C~a~~~~~~~~ 130 (145)
T 1z9m_A 114 DEGEYTCSIFTMPVRTA 130 (145)
T ss_dssp GCEEEEEEECSSSCEEE
T ss_pred CCEEEEEEEECCCCCEE
T ss_conf 87589999984899668
No 39
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibody; 1.69A {Homo sapiens}
Probab=37.11 E-value=22 Score=16.24 Aligned_cols=80 Identities=11% Similarity=0.108 Sum_probs=51.9
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC--CCEEEEEEECCCCCC
Q ss_conf 677222212048973899988700886047568998886589679885898367254566378--753999981368875
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLN--EWKFRLYYTSQSDKE 91 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~--~~~FrLYYtS~S~~~ 91 (116)
|+..+....+..|++|.+.|.+...- . ...|.||. ||..+.+.++|-+. ...-.|.-.+.+..|
T Consensus 4 i~~~~~~~~~~eG~~v~l~C~v~~~~--~--~~~v~W~k----------~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D 69 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYD--Q--STQVTWYF----------GVRQLENSEKYEITYEDGVAILYVKDITKLD 69 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCC--T--TCEEEEEE----------TTEECCSSSSEEEEEETTEEEEEECSCCGGG
T ss_pred ECCCCCCEEECCCCCEEEEEEEECCC--C--CCEEEEEE----------CCEECCCCCCEEEEEECCEEEEEECCCCCCC
T ss_conf 53089786996899199999998489--8--98999998----------9999879987899996999999992886001
Q ss_pred CCEEEEEEEECCCCEE
Q ss_conf 6327999982899659
Q T0577 92 AQTIDLYFEDNWGNLQ 107 (116)
Q Consensus 92 ~qtidv~v~Dnfgq~~ 107 (116)
+-.....+...+|...
T Consensus 70 ~G~Y~C~a~N~~G~~~ 85 (97)
T 2bk8_A 70 DGTYRCKVVNDYGEDS 85 (97)
T ss_dssp CEEEEEEEECSSCEEE
T ss_pred CEEEEEEEEECCCEEE
T ss_conf 3899999998997699
No 40
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=36.76 E-value=23 Score=16.21 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=52.7
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC--CCEEEEEEECCCCCCCCEE
Q ss_conf 22212048973899988700886047568998886589679885898367254566378--7539999813688756327
Q T0577 18 PVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLN--EWKFRLYYTSQSDKEAQTI 95 (116)
Q Consensus 18 pv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~--~~~FrLYYtS~S~~~~qti 95 (116)
|-...+..|++|.+.|.+. |.=.....+|.|+. +++-.+...++..+...+.+... ...+.|--.+....|+-..
T Consensus 11 p~~~~v~~G~~v~l~C~v~--g~p~~~~p~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 87 (108)
T 3cx2_A 11 PQDGEVTVGGSITFSARVA--GASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSY 87 (108)
T ss_dssp CCCEEEETTCCEEEEEEEE--CC-CCSCCEEEEEE-TTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEE
T ss_pred CCEEEEECCCEEEEEEEEC--CCCCCCCCEEEEEE-CCCEEECCCCCCEEEEEECEEEEECCCEEEEEEECCCHHHCEEE
T ss_conf 9669993999799998736--89977798899996-87217505898257642010245416799999912767669899
Q ss_pred EEEEEECCCCE
Q ss_conf 99998289965
Q T0577 96 DLYFEDNWGNL 106 (116)
Q Consensus 96 dv~v~Dnfgq~ 106 (116)
...+....|..
T Consensus 88 ~C~a~N~~G~~ 98 (108)
T 3cx2_A 88 RCEVSTKDKFD 98 (108)
T ss_dssp EEEEECSSCEE
T ss_pred EEEEEECCCEE
T ss_conf 99999899849
No 41
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=36.68 E-value=23 Score=16.20 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=26.9
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEE
Q ss_conf 20489738999887008860475689988865896798
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSL 59 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L 59 (116)
....||+|.|+|.+.....-.+..|.-=|=|..|++--
T Consensus 12 ~~~~G~svtl~C~~s~~~~~~~~~~~~WYrq~~g~~p~ 49 (111)
T 1j05_L 12 AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPK 49 (111)
T ss_dssp ECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEE
T ss_pred EECCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCE
T ss_conf 98999999999994888558997548999918999889
No 42
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=36.63 E-value=23 Score=16.19 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=24.4
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 048973899988700886047568998886589679885
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
..+|++|.|.|+... +......|--=|-|..|++-..+
T Consensus 17 v~pG~svtL~C~~s~-~~~~~~~yi~WYrQ~pG~~p~ll 54 (135)
T 1p4b_L 17 TSPGETVTLTCRSST-GAVTTSNYASWVQEKPDHLFTGL 54 (135)
T ss_dssp ECTTCEEEEEEEETT-SSCCGGGCCEEEEEEGGGEEEEE
T ss_pred ECCCCCEEEEEEECC-CCCCCCCCEEEEEECCCCCCEEE
T ss_conf 589998899999678-98877685899874899875771
No 43
>2rhe_A Bence-jones protein RHE (light chain); immunoglobulin; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 2a9m_L 2a9n_L*
Probab=35.94 E-value=21 Score=16.42 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=22.0
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEE-EEECCCEEEEE
Q ss_conf 20489738999887008860475689988-86589679885
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRY-FQPDGKGSLKM 61 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrY-fQ~dG~G~L~~ 61 (116)
.+.+|++|.|+|.. ..+++.. +.|.+ =|..|++.-.+
T Consensus 11 sv~~G~svtL~C~~-s~~~~~~--~~i~WYrq~~g~~~~~l 48 (114)
T 2rhe_A 11 SGTPGQRVTISCTG-SATDIGS--NSVIWYQQVPGKAPKLL 48 (114)
T ss_dssp EECTTCCEEEEEEC-CTTTTTT--SCEEEEECCTTSCCEEE
T ss_pred EECCCCCEEEEEEE-CCCCCCC--CEEEEEECCCCCCCEEE
T ss_conf 77999989989997-7628739--81897973599887797
No 44
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Probab=34.95 E-value=24 Score=16.03 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=26.5
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECC-CEEEEECCCCE
Q ss_conf 048973899988700886047568998886589-67988589836
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDG-KGSLKMEDGTV 66 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG-~G~L~~~dg~~ 66 (116)
...|+||++.|.+....+........ |+|.++ .-.+.+..|..
T Consensus 6 a~~G~tv~LpC~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 49 (110)
T 1ncn_A 6 AYFNETADLPCQFANSQNQSLSELVV-FWQDQENLVLNEVYLGKE 49 (110)
T ss_dssp EETTSCEEEECCCCCTTCCCGGGEEE-EEEETTCCEEEEEETTEE
T ss_pred EEECCEEEEEEEECCCCCCCCEEEEE-EEEECCCCEEEEEECCCC
T ss_conf 99198099984981887576169999-998089757999998860
No 45
>2gj6_D A6-TCR; X-RAY crystallography, HTLV-1 TAX peptide, haptenated peptide, lysine-4-(3-indolyl)-butyric acid, MHC class I,HLA A2, T-cell receptor A6; HET: 3IB; 2.56A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 1qrn_D
Probab=33.97 E-value=25 Score=15.93 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=29.3
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 677222212048973899988700886047568998886589679885
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
|+--|-...+..|++|.|+|...-.+ ..|..=|-|..|+|-..+
T Consensus 3 V~Q~p~~~~v~~G~svtL~C~~s~~~----~~~~~WyrQ~~g~~p~~l 46 (200)
T 2gj6_D 3 VEQNSGPLSVPEGAIASLNCTYSDRG----SQSFFWYRQYSGKSPELI 46 (200)
T ss_dssp EEECCSCEEEETTSCEEEEEEECCTT----CCEEEEEEECTTSCCEEE
T ss_pred EEECCCCEEECCCCCEEEEEEECCCC----CCCEEEEEECCCCCCEEE
T ss_conf 59239987983999899999973537----588899997899997440
No 46
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, guanine nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=33.90 E-value=15 Score=17.31 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCEEEEEECCHHCCCCCEEEEEEEEEEC
Q ss_conf 68636772222120489738999887008
Q T0577 10 YPFTVESMPVADEIAGDETVEIRLEIKPS 38 (116)
Q Consensus 10 YpF~v~tmpv~k~I~~geTvEIRc~L~re 38 (116)
--|.+++.-|+..+..+++-|||.++++.
T Consensus 155 ~~~~~~vtf~~d~l~gd~~tei~v~~~~~ 183 (193)
T 3cue_D 155 VQLDCDVWFVSDILRGDSQTEIKVKLNRI 183 (193)
T ss_dssp TTCCCEEEECCCSSSSSSCBCEEEECCCC
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 79617999985246899852899985011
No 47
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=33.55 E-value=25 Score=15.89 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=54.7
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCC--CEEEEEEECCCCCC
Q ss_conf 6772222120489738999887008860475689988865896798858983672545663787--53999981368875
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNE--WKFRLYYTSQSDKE 91 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~--~~FrLYYtS~S~~~ 91 (116)
+...|-...+..|+.|.+.|... |+ -.-.|.|+. +|..+.++++|-+.. ....|.-.+....|
T Consensus 16 f~~~p~~~~v~~g~~~~l~C~~~--g~---P~p~i~W~k----------~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D 80 (107)
T 3irg_B 16 FLRFPRPVRVVSGAEAELKCVVL--GE---PPPVVVWEK----------GGQQLAASERLSFPADGAEHGLLLTAALPTD 80 (107)
T ss_dssp EEECCCCEEEETTSCEEEEEEEE--EE---SCCEEEEEE----------TTEECCCCSSEECCEETTEEEEEESSCCGGG
T ss_pred EEECCCCEEEECCCCEEEEEEEE--EE---CCCEEEEEE----------CCEEEECCCEEEEEECCCEEEEEECCCCCCC
T ss_conf 88589768995798199999998--82---699999999----------9998003221788632750121113452154
Q ss_pred CCEEEEEEEECCCCEEE
Q ss_conf 63279999828996599
Q T0577 92 AQTIDLYFEDNWGNLQQ 108 (116)
Q Consensus 92 ~qtidv~v~Dnfgq~~q 108 (116)
+-.....+...+|+...
T Consensus 81 ~G~Y~C~a~N~~G~~~~ 97 (107)
T 3irg_B 81 AGVYVCRARNAAGEAYA 97 (107)
T ss_dssp CEEEEEEEEETTEEEEE
T ss_pred CEEEEEEEEECCCEEEE
T ss_conf 86999999989988999
No 48
>2ial_A CD4+ T cell receptor E8 alpha chain; X-RAY crystallography, major histocompatibility complex, T cell stimulation, melanoma, tumor antigen; 1.92A {Homo sapiens} PDB: 2iam_C 2ian_D
Probab=33.40 E-value=26 Score=15.87 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=23.0
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEE
Q ss_conf 22221204897389998870088604756899888-658967988
Q T0577 17 MPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLK 60 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~ 60 (116)
.|-.-.+..|++|.|+|...- .-+.|-|+ |.-|++-..
T Consensus 6 sP~~~~v~~G~svtL~C~~~~------~~~~~~WYrQ~pg~~~~~ 44 (202)
T 2ial_A 6 SPPDLILQEGANSTLRCNFSD------SVNNLQWFHQNPWGQLIN 44 (202)
T ss_dssp ECSEEEEETTCCEEEEEEECT------TEEEEEEEEECTTCCEEE
T ss_pred ECCEEEECCCCCEEEEEEECC------CCCCEEEEEECCCCCCCE
T ss_conf 099889738999999999678------854679999999997728
No 49
>3h0t_B FAB fragment, heavy chain; peptide-FAB complex, antibiotic, antimicrobial, cleavage on PAIR of basic residues, disease mutation, disulfide bond, fungicide, hormone; 1.89A {Homo sapiens} PDB: 2g75_A 2dd8_H
Probab=33.39 E-value=26 Score=15.87 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=25.7
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEE
Q ss_conf 04897389998870088604756899888-658967988
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLK 60 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~ 60 (116)
..+|++|-|-|+. ....+..--|.|-++ |+-|+|-.+
T Consensus 12 v~pG~SvtLsC~~-SG~~~s~~~~~~~WyRQ~pG~~le~ 49 (237)
T 3h0t_B 12 VKPSQTLSLTCAI-SGDSVSSNSAAWNWIRQSPSRGLEW 49 (237)
T ss_dssp ECTTSCEEEEEEE-ESSCTTCTTCEEEEEEEETTTEEEE
T ss_pred ECCCCCEEEEEEE-ECCCEECCCEEEEEEEECCCCCEEE
T ss_conf 9999995998999-5878336850489999699996360
No 50
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2
Probab=33.00 E-value=11 Score=18.23 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=27.5
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 677222212048973899988700886047568998886589679885
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
+.+==++ .++.|.++-| .+..|+|+=.||||.|-.++
T Consensus 67 vr~sDv~-~~~~gD~v~I----------~g~~Y~V~~v~PDg~G~t~L 103 (117)
T 1k0h_A 67 VRTDEVR-QLRRGDTLTI----------GEENFWVDRVSPDDGGSCHL 103 (117)
T ss_dssp ESSSSTT-TCCSSCEEEE----------TTTCEEBCCCCSSSCCCTTC
T ss_pred EECHHCC-CCCCCCEEEE----------CCEEEEEEEECCCCCCEEEE
T ss_conf 8900166-8788998999----------99899997663599976999
No 51
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=32.27 E-value=27 Score=15.76 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=24.3
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEE
Q ss_conf 2048973899988700886047568998-88658967988
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLR-YFQPDGKGSLK 60 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~Ir-YfQ~dG~G~L~ 60 (116)
...+|++|.|.|..-..=-.....+.|- |-|..|++-..
T Consensus 45 sv~~G~svtL~C~~S~~~~~~~~~~~i~WyrQ~pG~~~~~ 84 (252)
T 3bkj_L 45 PVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKL 84 (252)
T ss_dssp EECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEE
T ss_pred EECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 9899999999998189875489971589998799999401
No 52
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=31.90 E-value=27 Score=15.72 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=53.6
Q ss_pred EECCHHCCCCCEEEEEEEEEE---C-------CCCCCCEEEEEEEE--ECCCEEEEECCCCEECCCCCCCCCCCEEEEEE
Q ss_conf 222212048973899988700---8-------86047568998886--58967988589836725456637875399998
Q T0577 17 MPVADEIAGDETVEIRLEIKP---S-------GNFIGTVYTLRYFQ--PDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYY 84 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~r---e-------G~y~~t~Y~IrYfQ--~dG~G~L~~~dg~~l~pnD~ypL~~~~FrLYY 84 (116)
|-+|++.+.|+.++||+-+.- . |.+- ...+|..+. .+|+-.+.++-++..-.| -.|++.+
T Consensus 8 iki~~~~k~G~v~~vk~li~HPMeTGlr~d~~g~~I-Pa~~I~~~~v~~ng~~v~~~~~~~~iS~N-------P~~~F~~ 79 (108)
T 2oxg_Z 8 VKVPSSAKAGETVTVKALISHKMESGQRKDADGKLI-PRSIINRFTCELNGVNVVDVAIDPAVSTN-------PYFEFDA 79 (108)
T ss_dssp EECCSEECTTEEEEEEEEECCCCBCSCCBCTTSCBC-CCBCEEEEEEEETTEEEEEEEECTTBCSS-------CEEEEEE
T ss_pred EEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC-CHHHEEEEEEEECCEEEEEEEECCCCCCC-------CEEEEEE
T ss_conf 673275579987999999878885333318778994-36803899999999999999807853379-------7489997
Q ss_pred ECCCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 1368875632799998289965999986
Q T0577 85 TSQSDKEAQTIDLYFEDNWGNLQQLTYD 112 (116)
Q Consensus 85 tS~S~~~~qtidv~v~Dnfgq~~ql~f~ 112 (116)
+... +-.+.+...||.|+..+-+..
T Consensus 80 ~~~~---~g~l~v~~~Dn~G~~~~~~~~ 104 (108)
T 2oxg_Z 80 KVDA---AGEFKFTWYDDDGSVYEDVKP 104 (108)
T ss_dssp EECS---SEEEEEEEEETTSCEEEEEEE
T ss_pred CCCC---CCEEEEEEEECCCCEEEEEEE
T ss_conf 3799---966999999798988999999
No 53
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=31.70 E-value=27 Score=15.70 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=16.4
Q ss_pred EECCCCEEEEEECCHHCCCCCEEEEEEEE
Q ss_conf 01168636772222120489738999887
Q T0577 7 QQEYPFTVESMPVADEIAGDETVEIRLEI 35 (116)
Q Consensus 7 Qq~YpF~v~tmpv~k~I~~geTvEIRc~L 35 (116)
.-.+|-....++.+..+..|++|.+.|..
T Consensus 100 ~v~~~p~~~~~~~~~~~~~g~~v~l~C~~ 128 (212)
T 1f97_A 100 TVLVPPSKPTISVPSSVTIGNRAVLTCSE 128 (212)
T ss_dssp EEEBCCCCCEEECCSEEETTSCEEEEEEC
T ss_pred EEECCCCCEEECCEEEEEEEEEEEEEECC
T ss_conf 46528853020320355430002567313
No 54
>1pkq_A (8-18C5) chimeric FAB, light chain; autoantibody, multiple sclerosis, EAE, immune system; 3.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=31.67 E-value=27 Score=15.70 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=29.2
Q ss_pred EECCHHCCCCCEEEEEEEEEEC-CCCCCCEEEEEEE-EECCCEEEEEC
Q ss_conf 2222120489738999887008-8604756899888-65896798858
Q T0577 17 MPVADEIAGDETVEIRLEIKPS-GNFIGTVYTLRYF-QPDGKGSLKME 62 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~re-G~y~~t~Y~IrYf-Q~dG~G~L~~~ 62 (116)
.|---.+.+|++|.|.|+.... -.-....|.|.++ |..|+|-..+-
T Consensus 28 sP~~l~v~~G~svtL~C~~s~~~~~~~~~~~~i~WyrQ~~g~~~~~l~ 75 (241)
T 1pkq_A 28 SPSSLAVSAGEKVTMSCKSSQSLLNSGNQKNYLAWYQQKPGLPPKLLI 75 (241)
T ss_dssp ESSEEEECTTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEE
T ss_pred CCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 399799999998999999489876478876757999857999978765
No 55
>2edh_A Obscurin; IG-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.57 E-value=27 Score=15.69 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=51.6
Q ss_pred CCCCEECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCC--EE
Q ss_conf 4211011686367722221204897389998870088604756899888658967988589836725456637875--39
Q T0577 3 ELDIQQEYPFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEW--KF 80 (116)
Q Consensus 3 ~LdvQq~YpF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~~~--~F 80 (116)
.|.|+. .|-.+..-|-...+..|++|.+.|.+. |. . .|. |+.||..+.++++|-+..+ ..
T Consensus 12 ~l~V~~-~pp~f~~~~~~~~v~~g~~~~l~C~v~--~~---p--~v~----------W~k~g~~l~~~~r~~i~~~g~~~ 73 (113)
T 2edh_A 12 MLTVRA-LPIKFTEGLRNEEATEGATAVLRCELS--KM---A--PVE----------WWKGHETLRDGDRHSLRQDGARC 73 (113)
T ss_dssp CCCCCC-SCCCEEECCCCCEECTTSCEEEEEEES--SC---C--CCE----------EEESSSBCCCSSSEEEEEETTEE
T ss_pred EEEEEE-ECCEEEECCCCEEEECCCEEEEEEEEC--CC---C--CEE----------EEECCEECCCCCCEEEEEECCEE
T ss_conf 999971-298898789538992898099999988--99---8--769----------99998987788858996519999
Q ss_pred EEEEECCCCCCCCEEEEEE
Q ss_conf 9998136887563279999
Q T0577 81 RLYYTSQSDKEAQTIDLYF 99 (116)
Q Consensus 81 rLYYtS~S~~~~qtidv~v 99 (116)
+|.-.+....|+-.....+
T Consensus 74 ~L~I~~v~~~D~G~Y~C~a 92 (113)
T 2edh_A 74 ELQIRGLVAEDAGEYLCMC 92 (113)
T ss_dssp EEEECSCCSTTCEEEEEEE
T ss_pred EEEECCCCHHHCEEEEEEE
T ss_conf 9998999978889999998
No 56
>2wra_A Lectin, BCLA; sugar binding protein, bacterial lectin, oligosaccharides; HET: MAN; 1.10A {Burkholderia cenocepacia} PDB: 2wr9_A* 2vnv_A*
Probab=30.89 E-value=28 Score=15.62 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=16.4
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 8753999981368875632799998289
Q T0577 76 NEWKFRLYYTSQSDKEAQTIDLYFEDNW 103 (116)
Q Consensus 76 ~~~~FrLYYtS~S~~~~qtidv~v~Dnf 103 (116)
+...|.+---.-|+ .+|+|+|||-|+-
T Consensus 17 ~ni~Fgvta~~Nsa-~~QtikVyiDd~~ 43 (128)
T 2wra_A 17 PNTDFRAIFFANAA-EQQHIKLFIGDSQ 43 (128)
T ss_dssp TTCEEEEEEEECCS-SCEEEEEEETTCC
T ss_pred CCCEEEEEEEECCC-CCEEEEEEECCCC
T ss_conf 86478189996068-8406999967975
No 57
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=30.77 E-value=9.7 Score=18.48 Aligned_cols=13 Identities=8% Similarity=0.350 Sum_probs=5.7
Q ss_pred HCCCCCEEEEEEE
Q ss_conf 2048973899988
Q T0577 22 EIAGDETVEIRLE 34 (116)
Q Consensus 22 ~I~~geTvEIRc~ 34 (116)
.+.+|++|.++++
T Consensus 63 ~vp~G~~V~~~lt 75 (135)
T 2cua_A 63 EVPQGAEIVFKIT 75 (135)
T ss_dssp EEETTSEEEEEEE
T ss_pred EEECCCEEEEEEE
T ss_conf 9968999999999
No 58
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=30.73 E-value=22 Score=16.25 Aligned_cols=41 Identities=10% Similarity=0.246 Sum_probs=26.9
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 222212048973899988700886047568998886589679885
Q T0577 17 MPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
-|..-....|++|-|+|.+.. .. ..+.|.|+|-.|.+.+..
T Consensus 13 ~~~svtv~~G~tvtl~C~~s~--~~--~~~~~~Wy~q~~~~~~~~ 53 (120)
T 2yz1_A 13 PEKSVSVAAGDSTVLNCTLTS--LL--PVGPIKWYRGVGQSRLLI 53 (120)
T ss_dssp CSSEEEECTTCCEEECCEESC--CC--SCCCEEEEESSSTTCEEE
T ss_pred ECCEEEECCCCCEEEEEEECC--CC--CCCCEEEEEEECCCCEEE
T ss_conf 099899928998999899857--88--998599999849987999
No 59
>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 2a9n_H* 2a9m_H
Probab=29.88 E-value=29 Score=15.51 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=47.0
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE-----CCCCE-ECC--------------CCCC----CCC
Q ss_conf 204897389998870088604756899888-6589679885-----89836-725--------------4566----378
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKM-----EDGTV-LKP--------------NDRY----LLN 76 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~-----~dg~~-l~p--------------nD~y----pL~ 76 (116)
-+++|+++-+-|+. ....+. .|.|.++ |.-|||.-++ .+|.. +-| |-.| -|.
T Consensus 11 lvkPG~Sl~LSC~v-SG~~~~--~~~~~WvRQ~PGkglEwig~i~~~~~~t~Ya~~~kgR~tISrD~s~ntvyLqm~sL~ 87 (153)
T 2vyr_E 11 LVQPGGSLRLSCAA-SGFTFE--EYAMLWVRQAPGKGLEWVSGINARGYTTYYADSVKGRFTISRDNSKNTLYLQMNSLR 87 (153)
T ss_dssp EECTTCCEEEEEEE-ESSCGG--GCCEEEEEECTTSCCEEEEEECTTSCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred EECCCCCEEEEEEE-ECCCHH--CCCEEEEEECCCCCEEEEEEECCCCCCCEECHHHCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 69999893998997-896833--095478897989887999999489993385276276307651456582221407898
Q ss_pred CCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 753999981368875632799998289965999986
Q T0577 77 EWKFRLYYTSQSDKEAQTIDLYFEDNWGNLQQLTYD 112 (116)
Q Consensus 77 ~~~FrLYYtS~S~~~~qtidv~v~Dnfgq~~ql~f~ 112 (116)
.|.=-.||-.+.....-.-.-+.-|.|||--+++.+
T Consensus 88 ~eDTAvYYCAr~~~~~~~~~~~~fd~WGqGT~VTVS 123 (153)
T 2vyr_E 88 TEDTAVYYCAKPWYPFMASKGSEFDYWGQGTLVTVS 123 (153)
T ss_dssp GGGCEEEEEEECSSTTCCSCCCTTCEECSCEEEEEC
T ss_pred HHHCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 647989997771578657668866726979899898
No 60
>2v9t_A Roundabout homolog 1; structural protein/receptor, developmental protein, IG domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=29.47 E-value=29 Score=15.52 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=45.5
Q ss_pred EECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC------CCEE
Q ss_conf 0116863677222212048973899988700886047568998886589679885898367254566378------7539
Q T0577 7 QQEYPFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLN------EWKF 80 (116)
Q Consensus 7 Qq~YpF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~------~~~F 80 (116)
++.||=.+..-|-...+..|++|.+.|... |+- .-+|.|+. +|+ .+.++...... ....
T Consensus 5 ~~~~PP~i~~~p~~~~v~~G~~v~l~C~v~--g~P---~p~v~W~k-~g~---------~i~~~~~~~~~~~~~~~~~~~ 69 (117)
T 2v9t_A 5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAE--GRP---TPTIEWYK-GGE---------RVETDKDDPRSHRMLLPSGSL 69 (117)
T ss_dssp CCCEEEEEEECCCCEEECTTCCEEECCEEE--EES---CCEEEEEE-TTE---------ECCCTTTCSSCSEEECTTSCE
T ss_pred CCCCCCEEEECCCCEEEECCCEEEEEEEEE--EEC---CCEEEEEE-CCE---------ECCCCCCCCEEEEEEEECCCE
T ss_conf 656899999768849995899399999998--825---87899998-999---------955888864026789608988
Q ss_pred ---EEEEECCCCCCCCEEEEEEEECCCCE
Q ss_conf ---99981368875632799998289965
Q T0577 81 ---RLYYTSQSDKEAQTIDLYFEDNWGNL 106 (116)
Q Consensus 81 ---rLYYtS~S~~~~qtidv~v~Dnfgq~ 106 (116)
+|--.+.+..|+-.....+...+|..
T Consensus 70 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~ 98 (117)
T 2v9t_A 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEA 98 (117)
T ss_dssp EESSCCCBTTBCSSCEEEEEEEEETTEEE
T ss_pred EEEEEEECCCCCCCCEEEEEEEEECCCCE
T ss_conf 88889977899103989999999998877
No 61
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=29.37 E-value=26 Score=15.79 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=24.0
Q ss_pred EEECCHHCCCCCEEEEEEEEEECCCCCCCE
Q ss_conf 722221204897389998870088604756
Q T0577 16 SMPVADEIAGDETVEIRLEIKPSGNFIGTV 45 (116)
Q Consensus 16 tmpv~k~I~~geTvEIRc~L~reG~y~~t~ 45 (116)
.|-.|..+..|-+|.|+++|.+.|.-.+.+
T Consensus 41 ~w~~P~~~~~~~~v~v~~~l~~dG~v~~~~ 70 (129)
T 1lr0_A 41 QWRRPPSARNGMSVEVLIEMLPDGTITNAS 70 (129)
T ss_dssp HCCCCTTCCTTCCEEEEEEECTTSBEEEEE
T ss_pred HCCCCCCCCCCCEEEEEEEEECCCCEEECC
T ss_conf 568998888897899999992799883220
No 62
>1uzv_A Pseudomonas aeruginosa lectin II; fucose, calcium; HET: FUC; 1.0A {Pseudomonas aeruginosa} SCOP: b.115.1.1 PDB: 1our_A 1oux_A 1ovp_A* 1ovs_A* 1oxc_A* 1ous_A* 2boj_A* 2bp6_A* 2vuc_A* 2vud_A* 3dcq_A* 1w8f_A* 1gzt_A* 1w8h_A* 2jdh_A* 2jdk_A* 2jdp_A* 2jdn_A* 2jdm_A* 2jdu_A* ...
Probab=29.33 E-value=24 Score=16.08 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=12.8
Q ss_pred CCEEEEE-EECCCCCCCCEEEEEE
Q ss_conf 7539999-8136887563279999
Q T0577 77 EWKFRLY-YTSQSDKEAQTIDLYF 99 (116)
Q Consensus 77 ~~~FrLY-YtS~S~~~~qtidv~v 99 (116)
...|++- |.+.+ .+|+|+|||
T Consensus 11 ni~Fgvta~~Nsa--~~QtikvyI 32 (114)
T 1uzv_A 11 NTRFGVTAFANSS--GTQTVNVLV 32 (114)
T ss_dssp TCEEEEEEEEEEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCC--CCEEEEEEE
T ss_conf 7578599996167--741699998
No 63
>2jmb_A AGR_L_42P, hypothetical protein ATU4866; structural genomics, ontario centre for structural proteomics, OCSP, unknown function; NMR {Agrobacterium tumefaciens str}
Probab=29.29 E-value=15 Score=17.29 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=20.6
Q ss_pred EEEEEEEEEECCCCCCCE------EEEEEEEECCCE
Q ss_conf 389998870088604756------899888658967
Q T0577 28 TVEIRLEIKPSGNFIGTV------YTLRYFQPDGKG 57 (116)
Q Consensus 28 TvEIRc~L~reG~y~~t~------Y~IrYfQ~dG~G 57 (116)
.--||-+|-..|+|.+|| |+=||-- .|.-
T Consensus 13 dg~Ir~eLlp~GRYdEaRg~r~sAYqGry~v-tG~h 47 (79)
T 2jmb_A 13 DGRIRQELLPNGRYDEARGNRKSAYQGRYEV-RGAH 47 (79)
T ss_dssp SSSEEEEEETTTEEEEEETTEEEEEEEEEEE-ETTE
T ss_pred CCCEEEEECCCCCEEHHCCCCCCCCEEEEEE-ECCE
T ss_conf 9978878648984601127864413367999-5664
No 64
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=29.18 E-value=30 Score=15.44 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE-----CC-CCEECCC--CCCCCC----CCEEE--------
Q ss_conf 04897389998870088604756899888-6589679885-----89-8367254--566378----75399--------
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKM-----ED-GTVLKPN--DRYLLN----EWKFR-------- 81 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~-----~d-g~~l~pn--D~ypL~----~~~Fr-------- 81 (116)
.++|+++-|-|+. ....+. .|.|-++ |+-|+|-.++ .+ .+.+.|. .|.-+. +-.|.
T Consensus 12 ~~pG~sl~lsC~~-SG~~~s--~y~~~WyRQ~PGk~le~l~~i~~~~~~~~y~~~~~~Rft~s~d~s~n~~~L~i~~l~~ 88 (219)
T 1c1e_H 12 KKPGETVKISCKA-SGYMFT--NYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN 88 (219)
T ss_dssp ECTTCCEEEEEEE-ESSCGG--GSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred ECCCCCEEEEEEE-ECCCHH--HCCEEEEEECCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEECCCCEEEEEECCCCC
T ss_conf 8999995999999-588957--4948999938999869999995999942898446898898688345889999889983
Q ss_pred ----EEEECCCCCCCCEEEEEEEECCCCEEEEEEE
Q ss_conf ----9981368875632799998289965999986
Q T0577 82 ----LYYTSQSDKEAQTIDLYFEDNWGNLQQLTYD 112 (116)
Q Consensus 82 ----LYYtS~S~~~~qtidv~v~Dnfgq~~ql~f~ 112 (116)
.||-...... .+..|.||+--.++..
T Consensus 89 eDsAvYYCA~~~~~-----~~~~~~fG~GT~ltV~ 118 (219)
T 1c1e_H 89 EDMATYFCARGTTI-----VRAMDYWGQGTSLTVS 118 (219)
T ss_dssp GGCEEEEEEEEETT-----TTEEEEECCCEEEEEC
T ss_pred CCCEEEEEEECCCC-----CCEECCCCCCEEEEEC
T ss_conf 54789999876875-----2000236999999988
No 65
>1mwa_A 2C alpha chain, 2C T cell receptor alpha chain; IG domain, antigen recognition, complementarity determining region, immune system; HET: NAG BMA; 2.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1g6r_A* 1tcr_A* 2ckb_A
Probab=28.70 E-value=31 Score=15.38 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=27.5
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 222212048973899988700886047568998886589679885
Q T0577 17 MPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
-|....+..|++|.|+|.....+. -|--=|=|..|++-..+
T Consensus 6 ~~~~vsv~~G~svtL~C~~s~s~~----~~~~WYrQ~pg~~p~~l 46 (202)
T 1mwa_A 6 PDARVTVSEGASLQLRCKYSYSAT----PYLFWYVQYPRQGLQLL 46 (202)
T ss_dssp SCSEEEEETTCCEEECCEEECSSC----CEEEEEEECTTSCEEEE
T ss_pred CCCEEEECCCCCEEEEEEECCCCC----CCEEEEEECCCCCCCEE
T ss_conf 899599889998999999747888----87899999999996176
No 66
>1ves_A VNAR, NEW antigen receptor variable domain; IG VNAR, 12Y-2, immune system; 2.18A {Orectolobus maculatus} SCOP: b.1.1.1 PDB: 2z8v_C 2z8w_C 2ywy_A 2ywz_A
Probab=28.32 E-value=31 Score=15.34 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=24.6
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEE
Q ss_conf 22221204897389998870088604756899888-65896798
Q T0577 17 MPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSL 59 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L 59 (116)
-|..-....|++|.|.|.... ..+. .+.|-++ |..|++.-
T Consensus 6 ~P~sv~~~~G~~vtl~C~~~~-~~~~--~~~i~Wyrq~~g~~~~ 46 (113)
T 1ves_A 6 TPRTATKETGESLTINCVLRD-ASFE--LKDTGWYRTKLGSTNE 46 (113)
T ss_dssp ECSEEEECTTCCEEEEEEEES-CSSC--CCEEEEEEEETTCCCC
T ss_pred ECCEEEECCCCCEEEEEEECC-CCCC--CCCEEEEEECCCCCCC
T ss_conf 396789878999999999858-8136--9945677762257872
No 67
>3b9v_A Heavy chain variable domain; X-RAY crystallography, antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B
Probab=28.14 E-value=31 Score=15.32 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=26.7
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 1204897389998870088604756899888-6589679885
Q T0577 21 DEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKM 61 (116)
Q Consensus 21 k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~ 61 (116)
.-+++||++-|.|+.- ...+. .|.|.++ |+-|||--++
T Consensus 10 ~lvkPg~sl~LsC~~S-G~s~s--~y~~~WvRQ~PGkglEwl 48 (120)
T 3b9v_A 10 GLVQPGGSLRLSCAAS-GFNIK--DTYIGWVRRAPGKGEEWV 48 (120)
T ss_dssp EEECTTCCEEEEEEEE-SSCGG--GSEEEEEEECTTCCEEEE
T ss_pred CEECCCCCCEEEEEEE-CCCCC--CCCEEEEECCCCCCEEEE
T ss_conf 1698998959989997-84811--581899975999866899
No 68
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=27.95 E-value=32 Score=15.30 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=24.5
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 04897389998870088604756899888658967988
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLK 60 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~ 60 (116)
..+|++|.|.|+... |......|---|=|.-|++-..
T Consensus 12 v~~G~tvtL~C~~s~-~~~~~~~~i~Wy~q~pg~~~~~ 48 (120)
T 1oaq_L 12 TSPGETVTLTCRSST-GAVTTSNYANWVQEKPDHLFTG 48 (120)
T ss_dssp ECTTCEEEEEEEETT-BCCCGGGCCEEEEEETTTEEEE
T ss_pred ECCCCCEEEEEEECC-CCCCCCCCEEEEECCCCCCCCC
T ss_conf 689998999999688-9987558688870079766102
No 69
>2esv_E KK50.4 T cell receptor beta chain; TCR, HLA-E, CMV, PMHC/TCR complex, immune system; 2.60A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3ffc_E
Probab=27.32 E-value=32 Score=15.23 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=23.7
Q ss_pred EECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEE
Q ss_conf 222212048973899988700886047568998-8865896798
Q T0577 17 MPVADEIAGDETVEIRLEIKPSGNFIGTVYTLR-YFQPDGKGSL 59 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~reG~y~~t~Y~Ir-YfQ~dG~G~L 59 (116)
.|--.-+..|++|-|+|... .| + +.|- |-|..|+|--
T Consensus 5 ~P~~~~~~~G~svtL~C~~~-~~-~----~~~~WyrQ~~g~~~~ 42 (240)
T 2esv_E 5 FPSHSVIEKGQTVTLRCDPI-SG-H----DNLYWYRRVMGKEIK 42 (240)
T ss_dssp ECSEEEEETTCCEEEEEECC-TT-C----SEEEEEEEETTSCEE
T ss_pred CCCEEEECCCCCEEEEEEEC-CC-C----CCEEEEEECCCCCCE
T ss_conf 99967968799699999989-99-6----508999988999819
No 70
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=27.23 E-value=33 Score=15.22 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=26.9
Q ss_pred CCCCCEECCCCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 74211011686367722221204897389998870088604756899888658967988
Q T0577 2 NELDIQQEYPFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLK 60 (116)
Q Consensus 2 D~LdvQq~YpF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~ 60 (116)
++|-|+|.=. .-....|++|.|.|.+... .. ...|.|+|..|.+.+.
T Consensus 2 ~e~~V~Q~~~--------sv~v~~G~svtL~C~~s~~--~~--~~~~~w~~~~~~~~~l 48 (127)
T 2jju_A 2 DELQVIQPEK--------SVSVAAGESATLRCAMTSL--IP--VGPIMWFRGAGAGREL 48 (127)
T ss_dssp -CCCEECCCS--------EEEEETTSCEEECCEESCC--CS--CCCEEEEECSSTTCEE
T ss_pred CCCEEEEECC--------EEEEECCCCEEEEEEEECC--CC--CCCEEEEECCCCCCEE
T ss_conf 8738990399--------8999299989999999488--89--9868999816999879
No 71
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=25.73 E-value=35 Score=15.06 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=26.3
Q ss_pred EEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 677222212048973899988700886047568998886589679885
Q T0577 14 VESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 14 v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
|.--|--....+|++|.|+|...-... .|--=|-|..|++...+
T Consensus 4 vtQ~P~~~~~~~G~svtL~C~~s~~~~----~~~~WYrQ~~g~~~~~l 47 (108)
T 1jhl_L 4 LTQSPSYLVASPGETITINCRASKSIS----KSLAWYQEKPGKTNNLL 47 (108)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCT----TCEEEEEECTTSCCEEE
T ss_pred EECCCCEEEECCCCCEEEEEEECCCCC----CCEEEEEECCCCCCCEE
T ss_conf 890699589889998999999368898----98899988999998689
No 72
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=25.52 E-value=35 Score=15.03 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=20.9
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCE
Q ss_conf 204897389998870088604756899888658967
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKG 57 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G 57 (116)
....|++|.|.|... +++.. -|-.-|-|..|++
T Consensus 12 ~~~~G~svtL~C~~s--~~~~~-~~i~WyrQ~~g~~ 44 (115)
T 2otu_A 12 SFSLGASAKLTCTLS--SQHST-YTIEWYQQQPLKP 44 (115)
T ss_dssp ECCTTCCEEEEEEEC--GGGTT-CCEEEEEECTTSC
T ss_pred EECCCCCEEEEEEEC--CCCCC-CCEEEEEECCCCC
T ss_conf 858999999999989--99987-7399999898999
No 73
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=25.47 E-value=34 Score=15.10 Aligned_cols=53 Identities=23% Similarity=0.398 Sum_probs=28.7
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCE-EEEECCCCEECCC
Q ss_conf 3677222212048973899988700886047568998-88658967-9885898367254
Q T0577 13 TVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLR-YFQPDGKG-SLKMEDGTVLKPN 70 (116)
Q Consensus 13 ~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~Ir-YfQ~dG~G-~L~~~dg~~l~pn 70 (116)
++.--|..-.++.||.|-|||--...=+ +. +. |-|--|.- ..-...|-.|.|.
T Consensus 3 eltqspaslsvatgekvtircmtstdid--dd---mnwyqqkpgeppkflisegntlrpg 57 (107)
T 1i8k_A 3 ELTQSPASLSVATGEKVTIRCMTSTDID--DD---MNWYQQKPGEPPKFLISEGNTLRPG 57 (107)
T ss_dssp CEEEECSEEECCTTCCEEEEEEESSCCT--TC---EEEEEECTTSCCEEEEETTTEECTT
T ss_pred CCCCCCCEEEEECCCEEEEEEECCCCCC--CC---CHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 2122874157722870899983135635--54---0065528997981785478721899
No 74
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=25.47 E-value=35 Score=15.03 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=17.0
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEE
Q ss_conf 20489738999887008860475689988865896798
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSL 59 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L 59 (116)
.+..|++|++.|... |+= .-.|.|+-.++....
T Consensus 15 ~v~eG~~v~l~C~~~--g~p---~~~v~W~~~~~~~~~ 47 (209)
T 1nbq_A 15 RIPENNPVKLSCAYS--GFS---SPRVEWKFDQGDTTR 47 (209)
T ss_dssp CEETTCCCEEECEEE--SCS---SEEEEEEEEETTEEE
T ss_pred EECCCCCEEEEEEEE--ECC---CCEEEEEECCCCCCC
T ss_conf 981599999999996--308---998999999940220
No 75
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesion, immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=25.41 E-value=35 Score=15.02 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=13.7
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEE
Q ss_conf 8636772222120489738999887
Q T0577 11 PFTVESMPVADEIAGDETVEIRLEI 35 (116)
Q Consensus 11 pF~v~tmpv~k~I~~geTvEIRc~L 35 (116)
||.|..-|=...+..|++|.+.|..
T Consensus 2 p~~v~v~P~~~~v~~G~sv~L~C~~ 26 (196)
T 3bn3_B 2 PFWADLQPRVAFVERGGSLWLNCST 26 (196)
T ss_dssp CSCEEEESSEEEEETTEEEEEEEEE
T ss_pred CEEEEECCCCEEECCCCCEEEEEEC
T ss_conf 8399977996298869979999988
No 76
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}
Probab=25.23 E-value=14 Score=17.49 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=39.0
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE-----CCCCEEC----CCCCCCC--CCCEEEEEEECCC
Q ss_conf 212048973899988700886047568998886589679885-----8983672----5456637--8753999981368
Q T0577 20 ADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM-----EDGTVLK----PNDRYLL--NEWKFRLYYTSQS 88 (116)
Q Consensus 20 ~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~-----~dg~~l~----pnD~ypL--~~~~FrLYYtS~S 88 (116)
.|.+..|++|.|.|.+.... +..+..-|-|..|++--.+ .+...-. ++.|+-. .+..|.|--++..
T Consensus 8 v~tv~~G~svtL~C~~s~~~---~~~~i~Wyrq~~g~~p~~l~~~~~~~~~~~~~~~~~~~Rfs~~~~~~~~~L~I~~~~ 84 (137)
T 3bdb_A 8 VKTVKRGENVTMECSMSKVT---NKNNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGAR 84 (137)
T ss_dssp ECCCCTTCEECCCCBCTTCC---CGGGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEEESCC
T ss_pred EEEECCCCCEEEEEEECCCC---CCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCC
T ss_conf 06988999899999978998---788489999999999899999985899716256787767889820999789988998
Q ss_pred CCCC
Q ss_conf 8756
Q T0577 89 DKEA 92 (116)
Q Consensus 89 ~~~~ 92 (116)
..|+
T Consensus 85 ~~Ds 88 (137)
T 3bdb_A 85 EDDG 88 (137)
T ss_dssp STTC
T ss_pred CHHC
T ss_conf 0009
No 77
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, membrane, receptor, polymorphism, molecular mimicry, multiple sclerosis; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=25.15 E-value=36 Score=14.99 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=40.0
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEE-EEEECCCEEEEEC----CC-CEE---CCCCCCCCC---CCEE
Q ss_conf 3677222212048973899988700886047568998-8865896798858----98-367---254566378---7539
Q T0577 13 TVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLR-YFQPDGKGSLKME----DG-TVL---KPNDRYLLN---EWKF 80 (116)
Q Consensus 13 ~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~Ir-YfQ~dG~G~L~~~----dg-~~l---~pnD~ypL~---~~~F 80 (116)
-|.-.|--.-+..|++|.|.|...- + .-|.|- |-|..|+|-..+- ++ +.+ .+++++... ...|
T Consensus 26 ~V~Q~P~~~~~~~G~svtL~C~~s~---~--~~~~~~WYrQ~pG~~l~~l~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~ 100 (279)
T 2wbj_D 26 VVSQHPSWVISKSGTSVKIECRSLD---F--QATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLS 100 (279)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESS---S--CEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEE
T ss_pred EEEECCCEEEECCCCCEEEEEEECC---C--CCCEEEEEEECCCCCEEEEEEEECCCCCEECCCCCCCEEEEECCCCCEE
T ss_conf 7996598389679997999999788---5--7524999999999986999999579982787766124078304898789
Q ss_pred EEEEECCC
Q ss_conf 99981368
Q T0577 81 RLYYTSQS 88 (116)
Q Consensus 81 rLYYtS~S 88 (116)
.|--.+..
T Consensus 101 ~L~I~~l~ 108 (279)
T 2wbj_D 101 TLTVTSAH 108 (279)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
T ss_conf 99975677
No 78
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*
Probab=25.15 E-value=36 Score=14.99 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=28.4
Q ss_pred EECCHHCCCCCEEEEEEEEEECCC--CCCCEEEEEEEEECCCEEEEEC
Q ss_conf 222212048973899988700886--0475689988865896798858
Q T0577 17 MPVADEIAGDETVEIRLEIKPSGN--FIGTVYTLRYFQPDGKGSLKME 62 (116)
Q Consensus 17 mpv~k~I~~geTvEIRc~L~reG~--y~~t~Y~IrYfQ~dG~G~L~~~ 62 (116)
+|-.-....|++|.|.|....... -....+...|.+..|...+...
T Consensus 6 ~P~~v~~~~G~~V~LpC~f~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 53 (119)
T 1qfo_A 6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIH 53 (119)
T ss_dssp CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEE
T ss_pred CCCEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEEEEE
T ss_conf 487899986998999929928877788884799999779997307998
No 79
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 1mfe_L* 1mfb_L* 1mfc_L* 1mfd_L* 1etz_L* 1nc2_A* 1nc4_A* 1jnh_A* ...
Probab=23.97 E-value=38 Score=14.85 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=23.6
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 048973899988700886047568998886589679885
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
.++|++|-|.|.... |.....-|--=|-|..|++-...
T Consensus 12 ~~pG~svtLsC~~s~-~~~~~~~~v~WyrQ~pG~~~~~~ 49 (212)
T 1q0x_L 12 TSPGETVTLTCRSST-GAVTTSNYANWVQEKPDHLFTGL 49 (212)
T ss_dssp ECTTCCEEEEEEESS-SCCCGGGCCEEEEEETTTEEEEE
T ss_pred ECCCCCEEEEEEECC-CCCCCCCCEEEEEECCCCCCCCC
T ss_conf 489998999999788-99875797899994898676303
No 80
>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1
Probab=23.64 E-value=38 Score=14.81 Aligned_cols=37 Identities=11% Similarity=0.375 Sum_probs=27.1
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE
Q ss_conf 204897389998870088604756899888-6589679885
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKM 61 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~ 61 (116)
-+++|+++-|-|+. ..-.| +.|.|.++ |+-|||-.++
T Consensus 11 ~vkPg~sl~LsC~~-SG~~~--s~y~~~WvRQ~pGkglew~ 48 (121)
T 1kxv_C 11 TVPAGGSLRLSCAA-SGNTL--CTYDMSWYRRAPGKGRDFV 48 (121)
T ss_dssp EECTTCCEEEEEEE-ESCTT--CCEEEEEEEECTTSCEEEE
T ss_pred EECCCCCCEEEEEE-ECCCH--HHCCEEEEEECCCCCEEEE
T ss_conf 69999894998998-59895--6496899993899987999
No 81
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=23.50 E-value=29 Score=15.57 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=23.6
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 1204897389998870088604756899888658967988
Q T0577 21 DEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLK 60 (116)
Q Consensus 21 k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~ 60 (116)
|.+..|++|.|.|.+.... ...|-.=|-|..|++-..
T Consensus 9 ~~v~~G~~vtl~C~~~~~~---~~~~~~WYrq~~g~~p~~ 45 (111)
T 2qhl_A 9 KTVKRGENVTMECSMSKVK---DKDKLAWYRQSFGKVPQY 45 (111)
T ss_dssp EECCTTCCEEECCBCTTCS---CGGGEEEEEECTTBCCEE
T ss_pred EEECCCCCEEEEEEECCCC---CCCEEEEEEECCCCCCEE
T ss_conf 7987799899999978987---888299999899998599
No 82
>3bx7_C Cytotoxic T-lymphocyte-associated antigen 4; protein design, protein-protein complex, glycoprotein, immunoglobulin domain, polymorphism, transmembrane protein; 2.10A {Homo sapiens} PDB: 1i85_C 1ah1_A* 1i8l_C*
Probab=23.43 E-value=38 Score=14.79 Aligned_cols=88 Identities=11% Similarity=-0.016 Sum_probs=45.6
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE----ECCCC--EECCCCCC--CCCCCEEEEEEECCCCCCCCE
Q ss_conf 04897389998870088604756899888658967988----58983--67254566--378753999981368875632
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLK----MEDGT--VLKPNDRY--LLNEWKFRLYYTSQSDKEAQT 94 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~----~~dg~--~l~pnD~y--pL~~~~FrLYYtS~S~~~~qt 94 (116)
...|++|.|.|+..-.+.-.+ -+-..|-|..|++.-. +..+. .+.++-.. -.....+.|.-++....|+-+
T Consensus 11 ~~~g~~vtL~C~~~~~~~~~~-~~~~Wyrq~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav 89 (124)
T 3bx7_C 11 ASSRGIASFVCEYASPGKATE-VRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGL 89 (124)
T ss_dssp CCTTSCEEEEEECSCCCSSCE-EEEEEEEEETTEEEEEEEEEECTTSBCCCCTTCSEEEEEETTEEEEEECSCCGGGCEE
T ss_pred EECCCCEEEEEECCCCCCCCE-EEEEEEEECCCCCCEEEEEECCCCCEEECCCCEEEEEECCCCEEEEEECCCCCCCCEE
T ss_conf 948983998967666666771-6899999893994399999908997583069809989798999999997788689999
Q ss_pred EE--EEEE------ECCCCEEEEEE
Q ss_conf 79--9998------28996599998
Q T0577 95 ID--LYFE------DNWGNLQQLTY 111 (116)
Q Consensus 95 id--v~v~------Dnfgq~~ql~f 111 (116)
-= +++. ..||+--+|++
T Consensus 90 YyCa~~~~~~~~~~~~fG~GT~L~V 114 (124)
T 3bx7_C 90 YICKVELMYPPPYYLGIGNGTQIYV 114 (124)
T ss_dssp EEEEEEEEESSSCEEEECCCEEEEC
T ss_pred EEEEEECCCCCCCCEEECCCEEEEE
T ss_conf 9999855759863079999999999
No 83
>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B
Probab=23.40 E-value=38 Score=14.78 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=27.2
Q ss_pred CHHCCCCCEEEEEEEEEECCCCCCCEEEEEE-EEECCCEEEEE
Q ss_conf 2120489738999887008860475689988-86589679885
Q T0577 20 ADEIAGDETVEIRLEIKPSGNFIGTVYTLRY-FQPDGKGSLKM 61 (116)
Q Consensus 20 ~k~I~~geTvEIRc~L~reG~y~~t~Y~IrY-fQ~dG~G~L~~ 61 (116)
+.-.++||++-|-|+.- .-.+ +.|.|.+ =|+-|+|-.++
T Consensus 9 ~~~~kpg~sl~LsC~~S-G~s~--~~y~~~WvRQ~PGkglewl 48 (120)
T 1n4x_H 9 PELKKPGETVKISCKAT-NYAF--TDYSMHWVKQAPGGDLKYV 48 (120)
T ss_dssp CEEECTTCCEEEEEEEE-SSCG--GGSCEEEEEECTTSCEEEE
T ss_pred CEEECCCCCEEEEEEEE-CCCC--CCCCEEEEEECCCCCEEEE
T ss_conf 80798999979999962-8794--2487799993899877999
No 84
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*
Probab=23.18 E-value=39 Score=14.76 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=27.3
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEEC
Q ss_conf 0489738999887008860475689988865896798858
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKME 62 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~ 62 (116)
-..||+|.++|.+............|+|+.. ++..+..+
T Consensus 13 a~~getV~LPC~~~~~~~~~~~~~~v~W~~~-~~~v~~~~ 51 (127)
T 2jjs_C 13 TFGNDTVVIPCFVTNMEAQNTTEVYVKWKFK-GRDIYTFD 51 (127)
T ss_dssp CTTCSEEEECCBBSSCCCSSGGGEEEEEEET-TEEEEEEE
T ss_pred EECCCCEEEEEEECCCCCCCCCEEEEEEEEC-CCCEEEEE
T ss_conf 8489989996077786668853589999978-86449991
No 85
>1nfd_E H57 FAB; complex (immunoreceptor/immunoglobulin); HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=23.11 E-value=39 Score=14.75 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=24.7
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEEC
Q ss_conf 1204897389998870088604756899888-65896798858
Q T0577 21 DEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKME 62 (116)
Q Consensus 21 k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~~ 62 (116)
-.+.+|++|.|-|..- ++ ..|.|-++ |..|+|...+-
T Consensus 9 ~~v~~G~svtLsC~~s---~~--~~~~~~WyrQ~pg~~~~~l~ 46 (212)
T 1nfd_E 9 ASVTVGETVKITCSGD---QL--PKNFAYWFQQKSDKNILLLI 46 (212)
T ss_dssp EEEETTSCCCEEEEET---TG--GGSCCEEEEECTTCCEEEEE
T ss_pred EEECCCCCEEEEEEEC---CC--CCCCEEEEEECCCCCCEEEE
T ss_conf 6838999799999959---89--98888999979999955879
No 86
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3ffc_D
Probab=23.09 E-value=39 Score=14.75 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=29.0
Q ss_pred EEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 3677222212048973899988700886047568998886589679885
Q T0577 13 TVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKM 61 (116)
Q Consensus 13 ~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~ 61 (116)
+|+-.|-.-.+..|++|-|.|....... ..|-.=|-|..|++-..+
T Consensus 5 ~V~Q~p~~~~v~~G~~vtL~C~~~~~~~---~~~~~WYrQ~pg~~~~~l 50 (211)
T 2ak4_D 5 KVTQAQTEISVVEKEDVTLDCVYETRDT---TYYLFWYKQPPSGELVFL 50 (211)
T ss_dssp EEECCCCEEEEETTCCEEECCEEECSCS---SCEEEEEEECTTCCCEEE
T ss_pred CEEECCCEEEECCCCCEEEEEEECCCCC---CCCEEEEEECCCCCCEEE
T ss_conf 8794599599829999998998767975---773599999999986584
No 87
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.02 E-value=39 Score=14.74 Aligned_cols=76 Identities=9% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCEEEEEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC--CCEEEEEEECCC
Q ss_conf 863677222212048973899988700886047568998886589679885898367254566378--753999981368
Q T0577 11 PFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLN--EWKFRLYYTSQS 88 (116)
Q Consensus 11 pF~v~tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~--~~~FrLYYtS~S 88 (116)
|..+..-+-...+..|++|.+.|.+....- .. .|.| +.||..+.++++|-.. ...++|.-++..
T Consensus 8 p~~~~~~l~~~~v~~G~~~~l~C~v~~~~~-~~---~v~W----------~~~g~~i~~~~~~~~~~~~~~~~L~I~~v~ 73 (104)
T 2eny_A 8 HVGITKRLKTMEVLEGESCSFECVLSHESA-SD---PAMW----------TVGGKTVGSSSRFQATRQGRKYILVVREAA 73 (104)
T ss_dssp CCCCSBCCCCEEEESSCCEEEEEECSSCCC-SS---CBCC----------BSSSSBCSBCSSCEEEEETTEEEEEECSCC
T ss_pred CCEEEECCCCEEEECCCEEEEEEEEECCCC-CC---EEEE----------EECCCCCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 959974796189928996999999705899-96---8999----------989934654013578617998899977885
Q ss_pred CCCCCEEEEEEE
Q ss_conf 875632799998
Q T0577 89 DKEAQTIDLYFE 100 (116)
Q Consensus 89 ~~~~qtidv~v~ 100 (116)
..|+-.....+.
T Consensus 74 ~~D~G~Y~C~a~ 85 (104)
T 2eny_A 74 PSDAGEVVFSVR 85 (104)
T ss_dssp TTTCSCEEEEET
T ss_pred CCCCEEEEEEEC
T ss_conf 117899999992
No 88
>1c5d_H Monoclonal antibody against the main immunogenic region of the human muscle acetylcholine...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B
Probab=22.72 E-value=40 Score=14.70 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=42.0
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEEEE----CCCCEE-CC--CCCCCCC----CCEEEEEEECCCCC
Q ss_conf 04897389998870088604756899888-6589679885----898367-25--4566378----75399998136887
Q T0577 23 IAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSLKM----EDGTVL-KP--NDRYLLN----EWKFRLYYTSQSDK 90 (116)
Q Consensus 23 I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L~~----~dg~~l-~p--nD~ypL~----~~~FrLYYtS~S~~ 90 (116)
.++||++-|-|+.- ...+. .|.|.++ |+-|+|--++ .+|... -| .+|.-.. +..|.|=-.+....
T Consensus 12 v~pG~sl~lsC~~S-G~s~s--~~~~~WyrQ~PGk~le~i~~i~~~~~~~y~~~~~~Rft~s~d~s~~~~~L~i~~l~~e 88 (215)
T 1c5d_H 12 VQPSQTLSLTCTVS-GFPLT--TNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (215)
T ss_dssp ECTTCCEEEEEEEC-SSCTT--SCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred ECCCCCCEEEEEEE-CCCHH--HCCEEEEEECCCCCEEEEEEECCCCCEEECHHHCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 99999929999997-77968--8979999808999879999992999998885537845896486788788867579988
Q ss_pred CCCEEEE------EEEECCCCEEEEEEE
Q ss_conf 5632799------998289965999986
Q T0577 91 EAQTIDL------YFEDNWGNLQQLTYD 112 (116)
Q Consensus 91 ~~qtidv------~v~Dnfgq~~ql~f~ 112 (116)
|+-+--- ...|-||+--+++..
T Consensus 89 DsavYyCa~~~~~~~~~~fG~GT~vtVs 116 (215)
T 1c5d_H 89 DTAIYFCTREDGWNYFDYWGPGTMVTVS 116 (215)
T ss_dssp GCEEEEEEECCSSSCSCCBCCCEEEEEC
T ss_pred CCEEEEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 5258857615760100447988699988
No 89
>3idg_B 2F5 FAB heavy chain; HIV-1, 2F5, immune system; 1.86A {Homo sapiens} PDB: 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 2pr4_H 3drq_B 2p8m_B 2p8p_B 2pw1_B 2pw2_B 3dro_B 2p8l_B 3drt_B 3egs_B 1tjg_H* 1tjh_H* 1tji_H* 2f5b_H ...
Probab=22.58 E-value=40 Score=14.68 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=23.9
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEE-EEECCCEEEEE
Q ss_conf 20489738999887008860475689988-86589679885
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRY-FQPDGKGSLKM 61 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrY-fQ~dG~G~L~~ 61 (116)
-+++||||-|-|+.- .+.+..-.|.|-+ -|+.|+|-.++
T Consensus 11 lv~pG~svtLsC~~S-G~~~s~~~~~~~WyrQ~pG~~~e~l 50 (237)
T 3idg_B 11 LVKPTQTLTLTCSFS-GFSLSDFGVGVGWIRQPPGKALEWL 50 (237)
T ss_dssp EECTTCCEEEEEEEE-SSCTTSTTCEEEEEEECTTSCCEEE
T ss_pred EECCCCCEEEEEEEE-CCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf 499997969869995-8784479972899995899986999
No 90
>2bv4_A Lectin CV-IIL; mannose; HET: MMA; 1.0A {Chromobacterium violaceum} PDB: 2boi_A*
Probab=22.48 E-value=27 Score=15.78 Aligned_cols=23 Identities=9% Similarity=0.424 Sum_probs=14.0
Q ss_pred CCEEEEE-EECCCCCCCCEEEEEEEE
Q ss_conf 7539999-813688756327999982
Q T0577 77 EWKFRLY-YTSQSDKEAQTIDLYFED 101 (116)
Q Consensus 77 ~~~FrLY-YtS~S~~~~qtidv~v~D 101 (116)
...|++- |.+.+ .+|+|+|||-|
T Consensus 11 ni~Fg~ta~~Nsa--~~Qtikv~iDd 34 (113)
T 2bv4_A 11 RINFGVTVLVNSA--ATQHVEIFVDN 34 (113)
T ss_dssp TCEEEEEEEEEEE--EEEEEEEEETT
T ss_pred CCEEEEEEEECCC--CCEEEEEEECC
T ss_conf 7578699996167--63179999778
No 91
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=22.41 E-value=40 Score=14.66 Aligned_cols=75 Identities=11% Similarity=0.186 Sum_probs=51.3
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC---CCEEEEEEECCCCCCCCE
Q ss_conf 22212048973899988700886047568998886589679885898367254566378---753999981368875632
Q T0577 18 PVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLN---EWKFRLYYTSQSDKEAQT 94 (116)
Q Consensus 18 pv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~---~~~FrLYYtS~S~~~~qt 94 (116)
|-.-.+..|+++.+.|.+. |+ -.-+|.|+ .||..+.+++++-+. ....+|--.+....|+-.
T Consensus 48 ~~d~~v~~G~~~~l~C~v~--G~---P~p~v~W~----------kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~ 112 (154)
T 1fhg_A 48 ILDMEVVEGSAARFDCKVE--GY---PDPEVMWF----------KDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK 112 (154)
T ss_dssp CCCEEEETTSCEEEEEEEE--EE---SCCEEEEE----------ETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred CCCEEEECCCCEEEEEEEE--EE---CCCEEEEE----------ECCCCCCCEEEEEEEECCCCEEEEEECCCCHHHCEE
T ss_conf 9748995599699999997--84---59999999----------998803221100232113870089999879786989
Q ss_pred EEEEEEECCCCEE
Q ss_conf 7999982899659
Q T0577 95 IDLYFEDNWGNLQ 107 (116)
Q Consensus 95 idv~v~Dnfgq~~ 107 (116)
....+...+|...
T Consensus 113 Y~C~A~N~~G~~~ 125 (154)
T 1fhg_A 113 YTCKAVNSLGEAT 125 (154)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEEEECCCEEE
T ss_conf 9999997996899
No 92
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A
Probab=22.24 E-value=41 Score=14.64 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=51.0
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEE-ECCCCEECCCCCC----CCCCCEEEEEEECCCCCCCCEEE
Q ss_conf 204897389998870088604756899888658967988-5898367254566----37875399998136887563279
Q T0577 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLK-MEDGTVLKPNDRY----LLNEWKFRLYYTSQSDKEAQTID 96 (116)
Q Consensus 22 ~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~-~~dg~~l~pnD~y----pL~~~~FrLYYtS~S~~~~qtid 96 (116)
....|++|.+.|.....+.+. .|.|+.......+. ..++....++.+| -|....+.|--++....|+-...
T Consensus 14 ~~~~G~~VtL~C~~~~~~~~~----~v~W~~~~~~~i~~~~~~~~~~~~~~~y~~R~~~~~~~~sL~I~~l~~~DsG~Y~ 89 (110)
T 2ptt_A 14 NAYTGSNVTLKIHKDPLGPYR----RITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYY 89 (110)
T ss_dssp EEETTSCEEECSCSSCCCSCS----EEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCEEEE
T ss_pred EEECCCCEEEEEECCCCCCCC----EEEEEECCCCEEEEEECCCCEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEE
T ss_conf 990198689984317888843----9999989977699998998681228761223862599388999148516165999
Q ss_pred EEEEECCCCEEEEEE
Q ss_conf 999828996599998
Q T0577 97 LYFEDNWGNLQQLTY 111 (116)
Q Consensus 97 v~v~Dnfgq~~ql~f 111 (116)
.-|.++-++..+.++
T Consensus 90 c~v~~~~~~~~~v~l 104 (110)
T 2ptt_A 90 MRVLRETENELKITL 104 (110)
T ss_dssp EEEESSSBCCEEEEE
T ss_pred EEEEECCCCEEEEEE
T ss_conf 999938986999999
No 93
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=21.74 E-value=42 Score=14.58 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=46.7
Q ss_pred EEECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCEECCCCCCCCC--CCEEEEEEECCCCCCCC
Q ss_conf 7222212048973899988700886047568998886589679885898367254566378--75399998136887563
Q T0577 16 SMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLN--EWKFRLYYTSQSDKEAQ 93 (116)
Q Consensus 16 tmpv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG~G~L~~~dg~~l~pnD~ypL~--~~~FrLYYtS~S~~~~q 93 (116)
..|-...+..|+++.+.|.+. |. -.-.|.|+. ||..+.+++++-+. ....+|.-.+.+..|+-
T Consensus 12 ~~p~~~~v~~G~~~~l~C~~~--g~---P~p~v~W~k----------~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G 76 (114)
T 2cqv_A 12 QFPEDQKVRAGESVELFGKVT--GT---QPITCTWMK----------FRKQIQESEHMKVENSENGSKLTILAARQEHCG 76 (114)
T ss_dssp CCCCSEEEETTCCEEEEEEEE--SS---SSCEEEEEE----------SSSBCCCSSSEEEEECSSEEEEEETTCCTTTCE
T ss_pred ECCCCEEEECCCCEEEEEEEE--EE---CCCEEEEEE----------CCCCCCCCCCEEEECCCCEEEEEEECCCCCCCE
T ss_conf 378768995898099999998--60---799799986----------475323452011203684489999558527888
Q ss_pred EEEEEEEECCCCE
Q ss_conf 2799998289965
Q T0577 94 TIDLYFEDNWGNL 106 (116)
Q Consensus 94 tidv~v~Dnfgq~ 106 (116)
.....+...+|..
T Consensus 77 ~Y~C~a~N~~G~~ 89 (114)
T 2cqv_A 77 CYTLLVENKLGSR 89 (114)
T ss_dssp EEEEEEECSSCEE
T ss_pred EEEEEEEECCCEE
T ss_conf 9999999899889
No 94
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=21.33 E-value=42 Score=14.53 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=16.7
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCEEEEEEE-EECCCEEE
Q ss_conf 1204897389998870088604756899888-65896798
Q T0577 21 DEIAGDETVEIRLEIKPSGNFIGTVYTLRYF-QPDGKGSL 59 (116)
Q Consensus 21 k~I~~geTvEIRc~L~reG~y~~t~Y~IrYf-Q~dG~G~L 59 (116)
.-+.+|++|-|.|.. .| |.-+.|.|-++ |.-|+|-.
T Consensus 129 ~~~~pG~svtLsC~~--sg-~~~~~~~~~W~rQ~pG~~le 165 (240)
T 1moe_A 129 ELVEPGASVKLSCTA--SG-FNIKDTYMHWVKQRPEQGLE 165 (240)
T ss_dssp EEECTTCCEEEEEEE--ES-SCGGGSCEEEEEECTTSCCE
T ss_pred CCCCCCCEEEEEEEE--EC-CCCCCCCEEEEEECCCCCCE
T ss_conf 665858729999998--16-75103517998448999856
No 95
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* 3dv6_A* ...
Probab=21.31 E-value=42 Score=14.52 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=26.7
Q ss_pred ECCHHCCCCCEEEEEEEEEECCC-CCCCEEEE-EEEEECCCEEEEE
Q ss_conf 22212048973899988700886-04756899-8886589679885
Q T0577 18 PVADEIAGDETVEIRLEIKPSGN-FIGTVYTL-RYFQPDGKGSLKM 61 (116)
Q Consensus 18 pv~k~I~~geTvEIRc~L~reG~-y~~t~Y~I-rYfQ~dG~G~L~~ 61 (116)
|-.-...+|++|.|.|.+..... .....+.| =|=|..|++--.+
T Consensus 8 P~~l~~~~G~svtl~C~~~~~~~~~~~~~~~~~Wyrq~~g~~p~~l 53 (114)
T 1eeq_A 8 PDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLL 53 (114)
T ss_dssp CSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEE
T ss_pred CCEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEE
T ss_conf 9999989999899999978885436887702898888899999999
No 96
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3epc_R* 3epd_R* 3epf_R*
Probab=20.47 E-value=44 Score=14.42 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=28.4
Q ss_pred ECCHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECC
Q ss_conf 22212048973899988700886047568998886589
Q T0577 18 PVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDG 55 (116)
Q Consensus 18 pv~k~I~~geTvEIRc~L~reG~y~~t~Y~IrYfQ~dG 55 (116)
|..-....|++|+++|.+...+.-....+.|.|+..+.
T Consensus 6 P~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~ 43 (221)
T 3eow_R 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGE 43 (221)
T ss_dssp CCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSS
T ss_pred CCEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEECCC
T ss_conf 98789957995999999963898756427999997997
Done!