HHsearch: T0578 VS pdb

Query         T0578 3NAT, Enterococcus faecalis, 164 residues
Match_columns 164
No_of_seqs    24 out of 26
Neff          3.3 
Searched_HMMs 22458
Date          Sun Jun 13 15:16:05 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0578.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0578.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2p62_A Hypothetical protein PH  45.9      11  0.0005   17.6   2.7   21   85-105    56-77  (241)
  2 2iih_A Molybdenum cofactor bio  21.9      39  0.0017   14.4   2.5   38   23-60     81-118 (157)
  3 3hlz_A Uncharacterized protein  17.2      38  0.0017   14.4   1.3   17   66-82     23-42  (269)
  4 2d11_E Na(+)/H(+) exchange reg  14.6      20 0.00088   16.1  -0.7   10   27-36     15-24  (28)
  5 1sgh_B Ezrin-radixin-moesin bi  12.0      23   0.001   15.7  -1.0   11   26-36     25-35  (39)
  6 2d10_E Ezrin-radixin-moesin bi  10.5      30  0.0013   15.1  -0.9   11   26-36     14-24  (28)
  7 3bjo_A Uncharacterized ATP-bin  10.1      37  0.0017   14.5  -0.5   20  109-128     6-25  (103)
  8 2jmk_A Hypothetical protein TA   9.6      84  0.0038   12.4   1.6   26  102-127    26-51  (111)
  9 3fpr_A Evasin-1; novel fold, g   9.4      48  0.0021   13.8  -0.1   10   26-35     85-95  (100)
 10 2nyu_A Putative ribosomal RNA    9.1      88  0.0039   12.3   2.1   27   72-98    165-192 (196)

No 1  
>2p62_A Hypothetical protein PH0156; structural genomics, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii OT3} SCOP: e.67.1.1
Probab=45.88  E-value=11  Score=17.56  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=17.6

Q ss_pred             CC-CEEEECCCCCCCHHHHHHH
Q ss_conf             12-3787324742223589999
Q T0578            85 EE-YLVTIPYEGKKGLRKAVLD  105 (164)
Q Consensus        85 dd-YLa~iPy~gKkG~s~~~l~  105 (164)
                      || |||+||=+||.|+-|....
T Consensus        56 d~v~LaVipSeGnsgvirnL~n   77 (241)
T 2p62_A           56 DNIALVIIHAEGKQRIPKVLKS   77 (241)
T ss_dssp             TTEEEEEECSCCTTTHHHHHHH
T ss_pred             CCEEEEEEECCCCCHHHHHHHH
T ss_conf             8848999847884136889999


No 2  
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} PDB: 2ide_A
Probab=21.88  E-value=39  Score=14.35  Aligned_cols=38  Identities=8%  Similarity=0.194  Sum_probs=30.3

Q ss_pred             CCCEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCEE
Q ss_conf             53237720576507999999997464420575156600
Q T0578            23 DYEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVDGTL   60 (164)
Q Consensus        23 ~yD~~ldWDKknHaiEv~~~l~aen~~~~e~~D~~G~~   60 (164)
                      .-++..+|+..++.|.+.-+--..-+-|||++--.|+.
T Consensus        81 ~v~v~~~~~~~~~~i~i~~~v~~~~kTGVEMEALtavs  118 (157)
T 2iih_A           81 GVEVRVELLKAEKRVRIEATVKTKAETGVEMEAMTACA  118 (157)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHH
T ss_conf             89999998667736889999999548008872999999


No 3  
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=17.22  E-value=38  Score=14.41  Aligned_cols=17  Identities=53%  Similarity=0.809  Sum_probs=11.8

Q ss_pred             EEEEC---EEEEECCCCCCC
Q ss_conf             12202---447775542453
Q T0578            66 IEFED---GLLFYNPQKSVV   82 (164)
Q Consensus        66 I~fED---~ILfynp~Ks~f   82 (164)
                      -+|||   --|||||.+=.+
T Consensus        23 ~efed~e~sflfynp~~wtg   42 (269)
T 3hlz_A           23 NEFEDGEGSFLFYNPDVWTG   42 (269)
T ss_dssp             EEECCCTTEEEEECSSSCCC
T ss_pred             CHHCCCCCCEEEECCCCCCC
T ss_conf             21046776267778340357


No 4  
>2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus}
Probab=14.61  E-value=20  Score=16.11  Aligned_cols=10  Identities=40%  Similarity=1.029  Sum_probs=7.1

Q ss_pred             EEEECCCCEE
Q ss_conf             7720576507
Q T0578            27 GLDWDRKNHT   36 (164)
Q Consensus        27 ~ldWDKknHa   36 (164)
                      -|||+||+..
T Consensus        15 ~mdw~kk~ei   24 (28)
T 2d11_E           15 QMDWNRKREI   24 (28)
T ss_pred             CCCHHHHHHH
T ss_conf             8564788777


No 5  
>1sgh_B Ezrin-radixin-moesin binding phosphoprotein 50; FERM-peptide complex, structural protein; 3.50A {Homo sapiens} SCOP: j.117.1.1
Probab=12.03  E-value=23  Score=15.73  Aligned_cols=11  Identities=36%  Similarity=0.854  Sum_probs=8.0

Q ss_pred             EEEEECCCCEE
Q ss_conf             37720576507
Q T0578            26 VGLDWDRKNHT   36 (164)
Q Consensus        26 ~~ldWDKknHa   36 (164)
                      -.|||.|||..
T Consensus        25 P~MDWsKk~El   35 (39)
T 1sgh_B           25 PQMDWSKKNEL   35 (39)
T ss_pred             CCCCHHHHHHH
T ss_conf             87566899887


No 6  
>2d10_E Ezrin-radixin-moesin binding phosphoprotein 50; protein-peptide complex, cell adhesion; 2.50A {Mus musculus}
Probab=10.46  E-value=30  Score=15.06  Aligned_cols=11  Identities=36%  Similarity=0.854  Sum_probs=7.8

Q ss_pred             EEEEECCCCEE
Q ss_conf             37720576507
Q T0578            26 VGLDWDRKNHT   36 (164)
Q Consensus        26 ~~ldWDKknHa   36 (164)
                      -.|||-|||..
T Consensus        14 p~mdwsk~~el   24 (28)
T 2d10_E           14 PQMDWSKKNEL   24 (28)
T ss_pred             CCCCHHHHHHH
T ss_conf             86455888877


No 7  
>3bjo_A Uncharacterized ATP-binding protein MJ1010; APC87992.1, structural genomics, PSI-2, protein structure initiative; 2.05A {Methanocaldococcus jannaschii DSM2661}
Probab=10.07  E-value=37  Score=14.48  Aligned_cols=20  Identities=40%  Similarity=0.579  Sum_probs=10.9

Q ss_pred             HHHHHHHHCCHHHHHHHHCC
Q ss_conf             99999984125788886369
Q T0578           109 HYLKVVLDEGQSDLLDFLSD  128 (164)
Q Consensus       109 ~yLq~vld~G~sDLmDFl~D  128 (164)
                      +-|...+-+-.+.|+-||.|
T Consensus         6 eiL~~mL~d~~qkLkyfLe~   25 (103)
T 3bjo_A            6 DVLNILLMDEISKLKDFLSN   25 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999998


No 8  
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=9.58  E-value=84  Score=12.37  Aligned_cols=26  Identities=19%  Similarity=0.494  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHC
Q ss_conf             99999999999998412578888636
Q T0578           102 AVLDGFIHYLKVVLDEGQSDLLDFLS  127 (164)
Q Consensus       102 ~~l~~f~~yLq~vld~G~sDLmDFl~  127 (164)
                      -|++.|..-+..+-++-++-||+|..
T Consensus        26 kF~dSf~~l~~v~~~~~~D~l~dFI~   51 (111)
T 2jmk_A           26 RFLESFSELYDIIDENDTDVMMDFIS   51 (111)
T ss_dssp             GHHHHHHHHHHHTTSCCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             88999999998743778589999999


No 9  
>3fpr_A Evasin-1; novel fold, glycoprotein, secreted, immune system; 1.63A {Rhipicephalus sanguineus} PDB: 3fpu_A
Probab=9.40  E-value=48  Score=13.81  Aligned_cols=10  Identities=50%  Similarity=1.082  Sum_probs=0.0

Q ss_pred             EEEEE-CCCCE
Q ss_conf             37720-57650
Q T0578            26 VGLDW-DRKNH   35 (164)
Q Consensus        26 ~~ldW-DKknH   35 (164)
                      |.-|| |||||
T Consensus        85 w~~~~~~~~~~   95 (100)
T 3fpr_A           85 YRRNWRDKKNH   95 (100)
T ss_dssp             BCCCSCC----
T ss_pred             HHCCCCCCCCC
T ss_conf             00013112344


No 10 
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=9.11  E-value=88  Score=12.26  Aligned_cols=27  Identities=30%  Similarity=0.639  Sum_probs=0.0

Q ss_pred             EEEECCCCCCCCC-CCCEEEECCCCCCC
Q ss_conf             4777554245322-12378732474222
Q T0578            72 LLFYNPQKSVVDD-EEYLVTIPYEGKKG   98 (164)
Q Consensus        72 ILfynp~Ks~fd~-ddYLa~iPy~gKkG   98 (164)
                      |-++-|.-|+-.- |=|++|..|-|++|
T Consensus       165 v~~~KP~aSR~~ssE~YlV~~gfkg~~~  192 (196)
T 2nyu_A          165 VRIIKPEASRKESSEVYFLATQYHGRKG  192 (196)
T ss_dssp             EEEECCC--------EEEEEEEECCC--
T ss_pred             EEEECCCCCCCCCCEEEEEEECCCCCCC
T ss_conf             9998998828898439999577748898


Done!