Query T0578 3NAT, Enterococcus faecalis, 164 residues Match_columns 164 No_of_seqs 24 out of 26 Neff 3.3 Searched_HMMs 15564 Date Sun Jun 13 15:17:12 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0578.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0578.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2p62a1 e.67.1.1 (A:1-241) Hyp 46.5 7.5 0.00048 17.7 2.7 22 84-105 56-77 (241) 2 d1ekra_ d.58.21.1 (A:) Molybde 31.9 14 0.00093 16.0 2.3 36 24-59 74-109 (146) 3 d1ekra_ d.58.21.1 (A:) Molybde 31.5 15 0.00094 15.9 2.3 37 23-59 73-109 (146) 4 d2j9ga1 b.84.2.1 (A:331-446) B 27.2 20 0.0013 15.2 2.3 78 33-125 1-90 (116) 5 d1rwua_ d.58.54.1 (A:) Hypothe 17.1 35 0.0022 13.7 3.7 49 4-52 22-71 (87) 6 d1w96a1 b.84.2.1 (A:451-566) A 13.2 44 0.0028 13.1 2.7 78 33-118 1-84 (116) 7 d1q52a_ c.14.1.3 (A:) Naphthoa 9.3 60 0.0038 12.3 1.9 33 132-164 264-296 (297) 8 d2f0ca1 b.21.1.3 (A:63-163) Ba 8.2 67 0.0043 12.0 2.0 25 24-48 11-35 (101) 9 d2ogqa1 d.223.1.2 (A:371-494) 7.1 75 0.0048 11.7 3.8 18 101-118 106-123 (124) 10 d1ybea2 d.41.2.2 (A:8-167) Nic 7.0 25 0.0016 14.5 -1.6 28 83-110 84-112 (160) No 1 >d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]} Probab=46.54 E-value=7.5 Score=17.66 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=18.6 Q ss_pred CCCCEEEECCCCCCCHHHHHHH Q ss_conf 2123787324742223589999 Q T0578 84 DEEYLVTIPYEGKKGLRKAVLD 105 (164) Q Consensus 84 ~ddYLa~iPy~gKkG~s~~~l~ 105 (164) ++-|||+||=+||.|+-|.... T Consensus 56 d~v~LaVi~seGns~v~rnL~n 77 (241) T d2p62a1 56 DNIALVIIHAEGKQRIPKVLKS 77 (241) T ss_dssp TTEEEEEECSCCTTTHHHHHHH T ss_pred CCEEEEEEECCCCCHHHHHHHH T ss_conf 8858999847884137789999 No 2 >d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]} Probab=31.85 E-value=14 Score=15.98 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=29.3 Q ss_pred CCEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCE Q ss_conf 323772057650799999999746442057515660 Q T0578 24 YEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVDGT 59 (164) Q Consensus 24 yD~~ldWDKknHaiEv~~~l~aen~~~~e~~D~~G~ 59 (164) -++.++|+.+++.|++.-+-.+.-+-|||++--.|+ T Consensus 74 v~v~~~~~~~~~~i~i~~~v~~~~kTGVEMEALtav 109 (146) T d1ekra_ 74 VEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAA 109 (146) T ss_dssp EEEEEEEEGGGTEEEEEEEEEEEESSCCHHHHHHHH T ss_pred EEEEEEECCCCCEEEEEEEEEEECCCCEEHHHHHHH T ss_conf 999999858766799999999964883326789999 No 3 >d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]} SCOP: d1eksa_ Probab=31.55 E-value=15 Score=15.93 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=30.3 Q ss_pred CCCEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCE Q ss_conf 5323772057650799999999746442057515660 Q T0578 23 DYEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVDGT 59 (164) Q Consensus 23 ~yD~~ldWDKknHaiEv~~~l~aen~~~~e~~D~~G~ 59 (164) .-++.++|+.+++.|++.-+--+..+-|+||+--.|+ T Consensus 73 ~v~v~~~~~~~~~~i~v~~~v~~~~kTGVEMEALtav 109 (146) T d1ekra_ 73 KVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAA 109 (146) T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEEESSCCHHHHHHHH T ss_pred EEEEEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHH T ss_conf 3899999725889528999999852799726788899 No 4 >d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} Probab=27.21 E-value=20 Score=15.19 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=36.4 Q ss_pred CCEEEEEEEEEEEECCCCEEEECCCCEECC-----CCCEEEECEEEEECCCCCCCCCCCCEEEECCCCC------CCHHH Q ss_conf 650799999999746442057515660025-----7621220244777554245322123787324742------22358 Q T0578 33 KNHTIEVIVRLYAENNEQVAIDDVDGTLSE-----EEFIEFEDGLLFYNPQKSVVDDEEYLVTIPYEGK------KGLRK 101 (164) Q Consensus 33 knHaiEv~~~l~aen~~~~e~~D~~G~~s~-----e~iI~fED~ILfynp~Ks~fd~ddYLa~iPy~gK------kG~s~ 101 (164) |.|||| .|++|||+.+.. -..|.+.. .+-|-..-+| | ..|-+..-||+- .|-+| T Consensus 1 rGhAIE--~Ri~AEdp~~f~--Ps~G~i~~~~~p~g~gvRvDs~v--~---------~G~~v~~~YDsmiAKlI~~g~~R 65 (116) T d2j9ga1 1 RGHAVE--CRINAEDPNTFL--PSPGKITRFHAPGGFGVRWESHI--Y---------AGYTVPPYYDSMIGKLICYGENR 65 (116) T ss_dssp CSEEEE--EEEECBCTTTCS--BCCEECCEEECCCSTTEEEECCC--C---------TTCEECSSSCSEEEEEEEEESSH T ss_pred CCEEEE--EEEECCCCCCCC--CCCEEEEEEECCCCCCEEEEEEE--E---------CCCEECCCCCHHHHHHHHCCCCH T ss_conf 950999--999516898686--67752147778899982110046--2---------79574265556777784407889 Q ss_pred -HHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf -999999999999984125788886 Q T0578 102 -AVLDGFIHYLKVVLDEGQSDLLDF 125 (164) Q Consensus 102 -~~l~~f~~yLq~vld~G~sDLmDF 125 (164) +-++-....|++....|-.--.+| T Consensus 66 ~~Ai~~l~~aL~e~~I~Gv~TN~~~ 90 (116) T d2j9ga1 66 DVAIARMKNALQELIIDGIKTNVDL 90 (116) T ss_dssp HHHHHHHHHHHHHCEEESSCCSHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 9999999999874322476716999 No 5 >d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]} Probab=17.06 E-value=35 Score=13.71 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=38.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCEEEEEEEEEEEECCCCEE Q ss_conf 1443489999998873045532-377205765079999999974644205 Q T0578 4 MKKATMLTYLEEQLEKHLGDYE-VGLDWDRKNHTIEVIVRLYAENNEQVA 52 (164) Q Consensus 4 Mak~~~L~~Lee~ldk~~~~yD-~~ldWDKknHaiEv~~~l~aen~~~~e 52 (164) .+.-++.+.+.+.+.+|+++++ +...=-++..=+-|++++.|+|++++. T Consensus 22 ~~~~~~~~~v~~i~~~~~~~~~~v~~k~Ss~GkY~Svtv~i~~~s~~qv~ 71 (87) T d1rwua_ 22 QALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVE 71 (87) T ss_dssp ECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHH T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEECHHHHH T ss_conf 28800689999999873789775413115997278989889980879999 No 6 >d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=13.20 E-value=44 Score=13.09 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=35.1 Q ss_pred CCEEEEEEEEEEEECCCCEEEECCCCEECC-----CCCEEEECEEEEECCCCCCCCCCCCEE-EECCCCCCCHHHHHHHH Q ss_conf 650799999999746442057515660025-----762122024477755424532212378-73247422235899999 Q T0578 33 KNHTIEVIVRLYAENNEQVAIDDVDGTLSE-----EEFIEFEDGLLFYNPQKSVVDDEEYLV-TIPYEGKKGLRKAVLDG 106 (164) Q Consensus 33 knHaiEv~~~l~aen~~~~e~~D~~G~~s~-----e~iI~fED~ILfynp~Ks~fd~ddYLa-~iPy~gKkG~s~~~l~~ 106 (164) |-|||| .|++|||++.--. -..|.+.. .+-|-..-+| +......-.=|--|| +|-+ |+ =..+-++- T Consensus 1 rGhaIE--~Ri~AEdP~~~F~-Ps~G~i~~~~~p~~~~vR~d~~~--~~G~~v~~~YDsmlAKlI~~-g~--~R~~Ai~r 72 (116) T d1w96a1 1 KGHCTA--CRITSEDPNDGFK-PSGGTLHELNFRSSSNVWGYFSV--GNNGNIHSFSDSQFGHIFAF-GE--NRQASRKH 72 (116) T ss_dssp CSEEEE--EEEEEECCCCSSC-CCSSSEEEECCSSCSSEEEEEEE--CCSCSSCSSCSEEEEEEEEE-ES--SHHHHHHH T ss_pred CCEEEE--EEEECCCCCCCCC-CCCCEEEEEEECCCCEEEEEECC--CCCCCCCCCCCHHHHHHHHH-HC--CHHHHHHH T ss_conf 960899--9995126988822-68840157887488414542112--46742222337688889887-02--29999999 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999998412 Q T0578 107 FIHYLKVVLDEG 118 (164) Q Consensus 107 f~~yLq~vld~G 118 (164) +...|++...+| T Consensus 73 l~~aL~e~~I~G 84 (116) T d1w96a1 73 MVVALKELSIRG 84 (116) T ss_dssp HHHHHHHHTTCC T ss_pred HHHHHHHCEEEC T ss_conf 999987536734 No 7 >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Probab=9.31 E-value=60 Score=12.30 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=22.5 Q ss_pred CEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 036774088999988730111223332468999 Q T0578 132 EVFELHWEPADFEAMIKKVAETEKEQWIAYPSY 164 (164) Q Consensus 132 e~F~L~Wd~~~fe~~~~~~~e~~~~~~~~YPkY 164 (164) +.+...|..+.+.+++..--+--+-.|-||||| T Consensus 264 ~~~~~~~~s~d~~Egv~AF~eKR~P~f~~~~~~ 296 (297) T d1q52a_ 264 EATRLAYMTDEAVEGRDAFLQKRPPDWSPFPRY 296 (297) T ss_dssp HHHHHHHTSHHHHHHHHHHHTTSCCCCTTSCCC T ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 999998569889999999858999799999998 No 8 >d2f0ca1 b.21.1.3 (A:63-163) Baseplate protein (bpp), C-terminal domain {Lactococcus phage tp901-1 [TaxId: 35345]} Probab=8.20 E-value=67 Score=12.03 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=20.0 Q ss_pred CCEEEEECCCCEEEEEEEEEEEECC Q ss_conf 3237720576507999999997464 Q T0578 24 YEVGLDWDRKNHTIEVIVRLYAENN 48 (164) Q Consensus 24 yD~~ldWDKknHaiEv~~~l~aen~ 48 (164) --+.|.|-|||--||+.|.=++.|. T Consensus 11 nGl~l~ltKK~~~V~v~f~G~v~~~ 35 (101) T d2f0ca1 11 GGIILSLRKKGTTVEYSIGGEISSS 35 (101) T ss_dssp TTEEEEEEEETTEEEEEEEECCCSC T ss_pred CCEEEEEEECCCEEEEEEEEEEEEE T ss_conf 9679999975998999997798043 No 9 >d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=7.09 E-value=75 Score=11.71 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 899999999999998412 Q T0578 101 KAVLDGFIHYLKVVLDEG 118 (164) Q Consensus 101 ~~~l~~f~~yLq~vld~G 118 (164) ...+.+|..|+.+-|-+| T Consensus 106 v~ll~~F~~Ym~~~L~~~ 123 (124) T d2ogqa1 106 ITLLKYFRNYMSEHLLKA 123 (124) T ss_dssp HHHHHHHHHHHHHHCCCC T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 699999999999877636 No 10 >d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Probab=6.97 E-value=25 Score=14.54 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=0.0 Q ss_pred CCCCCEEEE-CCCCCCCHHHHHHHHHHHH Q ss_conf 221237873-2474222358999999999 Q T0578 83 DDEEYLVTI-PYEGKKGLRKAVLDGFIHY 110 (164) Q Consensus 83 d~ddYLa~i-Py~gKkG~s~~~l~~f~~y 110 (164) ++-+||+.. ||.++..++.+|++++..| T Consensus 84 eei~yL~~~~~~~~~~~f~~~fl~~L~~f 112 (160) T d1ybea2 84 KENIWLAGNTFYGRSQIFEPEFLSWLSSY 112 (160) T ss_dssp HHHHHHHHSCSSSCSCCSCHHHHHHHHTC T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHCC T ss_conf 99999984688555676798999997147 Done!