Query T0579 SR518, , 124 residues
Match_columns 124
No_of_seqs 37 out of 39
Neff 2.5
Searched_HMMs 15564
Date Sun Jun 13 15:17:18 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0579.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0579.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2akka1 b.34.11.2 (A:1-72) Hyp 40.3 8 0.00051 17.4 2.1 34 55-90 3-36 (72)
2 d1v6ga2 g.39.1.3 (A:42-81) Act 25.0 17 0.0011 15.6 1.7 15 61-75 6-20 (40)
3 d2as0a1 b.122.1.9 (A:1-72) Hyp 21.0 25 0.0016 14.8 1.8 55 46-103 15-69 (72)
4 d1a2oa1 c.23.1.1 (A:1-140) Met 17.5 24 0.0015 14.8 1.1 16 6-21 51-66 (140)
5 d2akla1 b.34.11.2 (A:41-114) H 17.2 36 0.0023 13.9 2.4 32 57-90 7-38 (74)
6 d1dcfa_ c.23.1.2 (A:) Receiver 16.8 32 0.0021 14.1 1.6 16 71-86 53-68 (134)
7 d2dmca1 b.1.18.10 (A:8-110) Fi 15.7 31 0.002 14.2 1.3 29 86-115 54-82 (103)
8 d1hyoa2 d.177.1.1 (A:119-416) 15.2 40 0.0026 13.6 1.9 16 61-76 260-277 (298)
9 d2w0pa1 b.1.18.10 (A:2237-2328 14.3 34 0.0022 14.0 1.2 33 82-115 43-75 (92)
10 d2dj4a1 b.1.18.10 (A:8-108) Fi 14.1 36 0.0023 13.8 1.3 22 95-116 60-81 (101)
No 1
>d2akka1 b.34.11.2 (A:1-72) Hypothetical protein RPA4501 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=40.29 E-value=8 Score=17.44 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=27.0
Q ss_pred ECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 002687755478987799970114554787068860
Q T0579 55 EEIKDAGDKTLQPGDQVILEASHMKGMKGATAEIDS 90 (124)
Q Consensus 55 EEl~~ag~~~~~~G~eV~l~AdHM~GMkgA~a~Id~ 90 (124)
-+++|+.-..|++||.|+|--|- --||+..+|-.
T Consensus 3 ~~vkDsnG~~L~~GDsV~liKDL--kVKGss~~~K~ 36 (72)
T d2akka1 3 IEVRDCNGALLADGDNVSLIKDL--KLKGSSTVLKR 36 (72)
T ss_dssp CCCBCSSCCBCCTTEEEEESSCE--EETTTTEEECT
T ss_pred EEEEECCCCCCCCCCEEEEEEEE--EECCCCCCCCC
T ss_conf 48994899893479989999755--85466743138
No 2
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.95 E-value=17 Score=15.60 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.3
Q ss_pred CCCCCCCCCEEEEEC
Q ss_conf 755478987799970
Q T0579 61 GDKTLQPGDQVILEA 75 (124)
Q Consensus 61 g~~~~~~G~eV~l~A 75 (124)
-+.||++||.|+.+-
T Consensus 6 Cr~pFP~GDRVTFnG 20 (40)
T d1v6ga2 6 CRLPFPPGDRVTFNG 20 (40)
T ss_dssp SCCCCCSSSCEEEET
T ss_pred CCCCCCCCCEEEECC
T ss_conf 178779988677748
No 3
>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.98 E-value=25 Score=14.76 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=40.2
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEEE
Q ss_conf 3454013330026877554789877999701145547870688603686068886432
Q T0579 46 VDHHKWVIQEEIKDAGDKTLQPGDQVILEASHMKGMKGATAEIDSAEKTTVYMVDYTS 103 (124)
Q Consensus 46 V~nHKWVv~EEl~~ag~~~~~~G~eV~l~AdHM~GMkgA~a~Id~~~~tTVYmVDy~~ 103 (124)
.+.|.|+-..+|... +..+++|+-|.|... .|-.=|.+..+..-+..+-+..+.+
T Consensus 15 ~~g~pwi~~~~i~~~-~g~~~~Gd~V~v~d~--~g~~lg~G~~n~~S~i~~Rils~~~ 69 (72)
T d2as0a1 15 GKGAMIVFKKGVVRV-EGDIKPGDIVEVYTR--GGKFLGKGFANPNSNIMVRIVTKDK 69 (72)
T ss_dssp HTTCCEEEGGGEEEE-ESCCCTTCEEEEEET--TCCEEEEEEECTTSSEEEEEEESCT
T ss_pred HCCCCEECHHHCCCC-CCCCCCCCEEEEEEC--CCCEEEEEEECCCCHHHHHHHCCCC
T ss_conf 848982877564112-587689968999938--9859999998888889998733797
No 4
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=17.55 E-value=24 Score=14.83 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=10.9
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 5799606756536872
Q T0579 6 QVIINTSHMKGMKGAE 21 (124)
Q Consensus 6 ~v~l~adHM~GM~GA~ 21 (124)
.++|.+=+||||+|-+
T Consensus 51 DlvllDi~MP~~dG~e 66 (140)
T d1a2oa1 51 DVLTLDVEMPRMDGLD 66 (140)
T ss_dssp SEEEEECCCSSSCHHH
T ss_pred CEEEECCCCCCCCHHH
T ss_conf 9999758889998899
No 5
>d2akla1 b.34.11.2 (A:41-114) Hypothetical protein PA0128, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.18 E-value=36 Score=13.88 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 2687755478987799970114554787068860
Q T0579 57 IKDAGDKTLQPGDQVILEASHMKGMKGATAEIDS 90 (124)
Q Consensus 57 l~~ag~~~~~~G~eV~l~AdHM~GMkgA~a~Id~ 90 (124)
++|+.-..|++||.|+|--|- -.||+..+|-.
T Consensus 7 vkD~nG~~L~~GDsV~liKDL--kVKGss~~~K~ 38 (74)
T d2akla1 7 IKDSVGNVLQDGDTITVIKDL--KVKGSSLVVKV 38 (74)
T ss_dssp CBCTTSCBCCTTCEEECCSCE--ECSSSSCEECT
T ss_pred EECCCCCCCCCCCEEEEEEEE--EECCCCCCCCC
T ss_conf 982899994479989999755--75477732028
No 6
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.81 E-value=32 Score=14.13 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=8.7
Q ss_pred EEEECCCCCCCCCCCE
Q ss_conf 9997011455478706
Q T0579 71 VILEASHMKGMKGATA 86 (124)
Q Consensus 71 V~l~AdHM~GMkgA~a 86 (124)
++|---+|+||.|-+.
T Consensus 53 lillD~~mP~~dG~el 68 (134)
T d1dcfa_ 53 VVFMDVCMPGVENYQI 68 (134)
T ss_dssp EEEEECCSSTTTTTHH
T ss_pred EEEEEECCCCCCHHHH
T ss_conf 6798733689866999
No 7
>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.66 E-value=31 Score=14.21 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=18.0
Q ss_pred EEEEECCCCEEEEEEEEECCCCCEEEEEEC
Q ss_conf 688603686068886432699946530001
Q T0579 86 AEIDSAEKTTVYMVDYTSTTSGEKVKNHKW 115 (124)
Q Consensus 86 a~Id~~~~tTVYmVDy~~t~~g~~v~NHKW 115 (124)
+.|..... -.|-|.|+|+.-|.-.-+=+|
T Consensus 54 ~~v~~~~d-g~y~v~f~P~~~G~h~i~V~~ 82 (103)
T d2dmca1 54 CLLKRLPN-NHIGISFIPREVGEHLVSIKK 82 (103)
T ss_dssp EEEEEETT-TEEEEEECCCSCEEEEEECBB
T ss_pred CEEEECCC-CEEEEEEEECCCEEEEEEEEE
T ss_conf 48998999-989999995776159999999
No 8
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.25 E-value=40 Score=13.61 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=11.9
Q ss_pred CCCC--CCCCCEEEEECC
Q ss_conf 7554--789877999701
Q T0579 61 GDKT--LQPGDQVILEAS 76 (124)
Q Consensus 61 g~~~--~~~G~eV~l~Ad 76 (124)
++.| |++||+|+|+|.
T Consensus 260 g~~~~~L~~GD~V~ie~~ 277 (298)
T d1hyoa2 260 GQTRTFLLDGDEVIITGH 277 (298)
T ss_dssp TCEESSCCTTCEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEE
T ss_conf 987665899989999999
No 9
>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.33 E-value=34 Score=13.98 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=20.5
Q ss_pred CCCCEEEEECCCCEEEEEEEEECCCCCEEEEEEC
Q ss_conf 7870688603686068886432699946530001
Q T0579 82 KGATAEIDSAEKTTVYMVDYTSTTSGEKVKNHKW 115 (124)
Q Consensus 82 kgA~a~Id~~~~tTVYmVDy~~t~~g~~v~NHKW 115 (124)
.++...+.... .-.|-|-|+|+..|.-.-+=+|
T Consensus 43 ~~~~v~v~d~~-dg~y~v~ytP~~~G~y~i~V~~ 75 (92)
T d2w0pa1 43 SKAEISFEDRK-DGSCGVAYVVQEPGDYEVSVKF 75 (92)
T ss_dssp SCCEEEEEECT-TSCEEEEEECSSCEEEEEEEEE
T ss_pred CCEEEEEEECC-CCEEEEEEEECCCCEEEEEEEE
T ss_conf 76078999899-9889999997987319999999
No 10
>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.08 E-value=36 Score=13.85 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.4
Q ss_pred EEEEEEEEECCCCCEEEEEECE
Q ss_conf 0688864326999465300011
Q T0579 95 TVYMVDYTSTTSGEKVKNHKWV 116 (124)
Q Consensus 95 TVYmVDy~~t~~g~~v~NHKWV 116 (124)
-.|-|.|+|+.-|.-.-+=+|-
T Consensus 60 G~y~v~y~P~~~G~y~i~V~~~ 81 (101)
T d2dj4a1 60 GTHTVTYTPSQEGPYMVSVKYA 81 (101)
T ss_dssp SEEEEEECCSSCEEEEEEEEES
T ss_pred CEEEEEEEECCCEEEEEEEEEC
T ss_conf 7999999969976699999999
Done!