Query T0580 lactose-specific IIB PTS system component, Streptococcus pneumoniae TIGR4, 105 residues Match_columns 105 No_of_seqs 102 out of 385 Neff 5.8 Searched_HMMs 22458 Date Sun Jun 13 15:19:44 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0580.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0580.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1e2b_A Enzyme IIB-cellobiose; 100.0 1.5E-31 6.6E-36 204.4 6.7 100 2-105 2-101 (106) 2 1tvm_A PTS system, galactitol- 99.1 4E-11 1.8E-15 85.0 6.0 92 2-105 20-112 (113) 3 3czc_A RMPB; alpha/beta sandwi 98.9 5.4E-09 2.4E-13 72.6 9.7 92 2-105 17-110 (110) 4 1vkr_A Mannitol-specific PTS s 97.9 3E-05 1.3E-09 50.7 7.7 91 1-102 11-103 (125) 5 2q9u_A A-type flavoprotein; fl 96.3 0.057 2.5E-06 31.5 10.7 86 2-89 255-353 (414) 6 1ydg_A Trp repressor binding p 95.3 0.022 9.7E-07 34.0 5.0 82 1-82 4-122 (211) 7 2r4q_A Phosphotransferase syst 95.2 0.0051 2.3E-07 37.7 1.6 90 5-103 4-101 (106) 8 2r48_A Phosphotransferase syst 94.8 0.018 7.9E-07 34.5 3.4 91 4-103 5-101 (106) 9 2vk2_A YTFQ, ABC transporter p 94.7 0.12 5.4E-06 29.6 7.4 81 3-84 2-92 (306) 10 2ohh_A Type A flavoprotein FPR 94.0 0.34 1.5E-05 27.0 9.7 94 4-103 257-365 (404) 11 3l6u_A ABC-type sugar transpor 92.9 0.38 1.7E-05 26.7 7.3 82 3-84 7-98 (293) 12 2zki_A 199AA long hypothetical 92.3 0.15 6.8E-06 29.0 4.6 83 1-83 2-115 (199) 13 8abp_A L-arabinose-binding pro 91.8 0.72 3.2E-05 25.1 8.8 83 2-84 1-91 (306) 14 1vme_A Flavoprotein; TM0755, s 91.7 0.74 3.3E-05 25.0 9.3 84 3-89 265-364 (410) 15 3hcw_A Maltose operon transcri 91.4 0.79 3.5E-05 24.9 9.4 100 2-103 6-125 (295) 16 1f4p_A Flavodoxin; electron tr 91.3 0.27 1.2E-05 27.5 5.0 53 5-57 2-55 (147) 17 1kor_A Argininosuccinate synth 91.1 0.25 1.1E-05 27.8 4.7 62 4-85 1-63 (400) 18 1zgg_A Putative low molecular 90.8 0.27 1.2E-05 27.6 4.6 74 4-79 1-103 (150) 19 2h3h_A Sugar ABC transporter, 90.5 0.46 2E-05 26.2 5.6 67 18-84 17-91 (313) 20 2f00_A UDP-N-acetylmuramate--L 90.5 0.18 7.9E-06 28.6 3.5 35 46-81 74-108 (491) 21 3g1w_A Sugar ABC transporter; 90.4 0.48 2.1E-05 26.1 5.6 66 19-84 22-95 (305) 22 2a9v_A GMP synthase; NP_394403 90.1 0.99 4.4E-05 24.3 7.0 73 2-81 12-91 (212) 23 1tlt_A Putative oxidoreductase 89.1 1 4.7E-05 24.1 6.5 93 2-102 4-114 (319) 24 3ksm_A ABC-type sugar transpor 88.8 0.95 4.2E-05 24.4 6.1 68 17-84 16-93 (276) 25 1u2p_A Ptpase, low molecular w 88.5 0.81 3.6E-05 24.8 5.6 42 1-42 2-46 (163) 26 1p3d_A UDP-N-acetylmuramate--a 87.7 0.47 2.1E-05 26.2 3.9 72 4-81 19-107 (475) 27 1vl2_A Argininosuccinate synth 86.7 0.75 3.4E-05 25.0 4.6 60 5-85 16-76 (421) 28 1d1q_A Tyrosine phosphatase (E 86.6 1.4 6.2E-05 23.4 5.9 68 2-71 6-106 (161) 29 2cwd_A Low molecular weight ph 84.8 1.9 8.6E-05 22.6 5.8 41 1-41 2-45 (161) 30 2a5l_A Trp repressor binding p 84.4 1.2 5.5E-05 23.7 4.7 66 5-70 7-100 (200) 31 2nz2_A Argininosuccinate synth 84.0 1.1 4.8E-05 24.1 4.3 62 2-84 4-66 (413) 32 2fvy_A D-galactose-binding per 83.9 2.4 0.00011 22.0 8.0 80 4-84 3-93 (309) 33 3f6r_A Flavodoxin; FMN binding 83.7 1.3 5.8E-05 23.6 4.6 53 5-57 3-56 (148) 34 3d02_A Putative LACI-type tran 83.6 2.5 0.00011 22.0 8.4 69 16-84 19-95 (303) 35 5nul_A Flavodoxin; electron tr 82.3 2.8 0.00012 21.6 8.8 90 4-102 1-101 (138) 36 2ark_A Flavodoxin; FMN, struct 81.7 2.9 0.00013 21.5 8.1 98 3-103 4-114 (188) 37 1tjy_A Sugar transport protein 81.5 3 0.00013 21.5 5.8 81 3-84 3-94 (316) 38 2gi4_A Possible phosphotyrosin 81.5 3 0.00013 21.5 7.3 94 4-102 2-140 (156) 39 3l49_A ABC sugar (ribose) tran 81.3 3 0.00013 21.4 9.8 81 4-84 6-95 (291) 40 3jvi_A Protein tyrosine phosph 80.4 1.6 7.2E-05 23.0 4.1 41 1-41 2-45 (161) 41 3d7n_A Flavodoxin, WRBA-like p 79.9 0.67 3E-05 25.3 2.0 81 2-82 5-98 (193) 42 3b6i_A Flavoprotein WRBA; flav 78.4 3.4 0.00015 21.2 5.2 78 4-81 2-111 (198) 43 2fn9_A Ribose ABC transporter, 78.3 3.8 0.00017 20.9 6.8 68 17-84 18-92 (290) 44 1k92_A Argininosuccinate synth 78.2 2.8 0.00012 21.7 4.7 37 3-43 10-46 (455) 45 1j6u_A UDP-N-acetylmuramate-al 77.4 2.9 0.00013 21.5 4.7 72 2-80 11-100 (469) 46 1rli_A Trp repressor binding p 76.8 1 4.6E-05 24.2 2.2 68 1-68 1-98 (184) 47 2z2v_A Hypothetical protein PH 76.0 4.4 0.0002 20.5 5.4 79 1-82 14-108 (365) 48 1t0i_A YLR011WP; FMN binding p 75.5 4.6 0.0002 20.4 7.4 89 4-99 1-135 (191) 49 1ycg_A Nitric oxide reductase; 74.1 4.9 0.00022 20.2 8.0 94 3-103 251-357 (398) 50 1gud_A ALBP, D-allose-binding 73.3 5.2 0.00023 20.1 5.9 68 17-84 17-93 (288) 51 1wwk_A Phosphoglycerate dehydr 73.3 3 0.00013 21.5 3.8 75 2-86 2-77 (307) 52 3eag_A UDP-N-acetylmuramate:L- 72.7 2.8 0.00012 21.7 3.5 30 50-80 66-95 (326) 53 1ccw_A Protein (glutamate muta 72.5 5.4 0.00024 20.0 9.8 102 2-105 2-135 (137) 54 2ywr_A Phosphoribosylglycinami 71.9 5.6 0.00025 19.9 6.7 62 3-86 1-62 (216) 55 3brq_A HTH-type transcriptiona 71.7 5.7 0.00025 19.9 9.3 98 6-104 22-134 (296) 56 3k32_A Uncharacterized protein 70.6 4.3 0.00019 20.5 4.1 25 1-25 4-28 (203) 57 2q5c_A NTRC family transcripti 67.7 6.9 0.00031 19.4 9.7 87 1-102 2-92 (196) 58 2fzv_A Putative arsenical resi 67.5 7 0.00031 19.3 6.6 37 1-37 56-95 (279) 59 2q62_A ARSH; alpha/beta, flavo 66.4 7.3 0.00033 19.2 7.1 56 1-56 32-104 (247) 60 3i2v_A Adenylyltransferase and 66.1 4.8 0.00021 20.3 3.6 45 2-46 71-118 (127) 61 3fro_A GLGA glycogen synthase; 66.0 7.2 0.00032 19.3 4.5 35 2-38 1-42 (439) 62 2jtq_A Phage shock protein E; 65.8 4.9 0.00022 20.2 3.6 35 2-40 40-74 (85) 63 2rjo_A Twin-arginine transloca 65.7 7.6 0.00034 19.1 8.9 73 12-84 13-97 (332) 64 3brs_A Periplasmic binding pro 65.5 7.7 0.00034 19.1 6.5 85 1-85 3-100 (289) 65 3clk_A Transcription regulator 65.3 7.7 0.00034 19.1 7.4 97 6-104 11-120 (290) 66 1vkz_A Phosphoribosylamine--gl 65.3 5.1 0.00023 20.1 3.6 88 2-102 14-139 (412) 67 1jx6_A LUXP protein; protein-l 65.2 7.8 0.00035 19.1 10.5 79 2-80 42-134 (342) 68 1zh8_A Oxidoreductase; TM0312, 64.8 7.4 0.00033 19.2 4.4 94 2-102 17-131 (340) 69 3fni_A Putative diflavin flavo 64.5 8 0.00036 19.0 11.2 84 3-89 4-99 (159) 70 3jy6_A Transcriptional regulat 64.2 8.1 0.00036 18.9 9.3 85 17-104 23-118 (276) 71 3hn2_A 2-dehydropantoate 2-red 63.9 8 0.00036 19.0 4.4 66 3-69 2-91 (312) 72 3gv0_A Transcriptional regulat 62.9 8.6 0.00038 18.8 7.3 87 16-104 25-122 (288) 73 2fsx_A RV0390, COG0607: rhodan 61.8 4.9 0.00022 20.2 3.0 24 2-25 79-102 (148) 74 1e4e_A Vancomycin/teicoplanin 61.6 4.6 0.0002 20.4 2.8 32 2-34 2-38 (343) 75 3eme_A Rhodanese-like domain p 61.2 5.2 0.00023 20.0 3.1 29 2-34 55-83 (103) 76 2ixa_A Alpha-N-acetylgalactosa 61.1 9.2 0.00041 18.6 9.1 99 1-102 18-140 (444) 77 3bbl_A Regulatory protein of L 61.0 9.3 0.00041 18.6 5.3 86 17-104 24-120 (287) 78 1czn_A Flavodoxin; FMN binding 60.8 9.3 0.00042 18.6 5.0 51 5-57 2-53 (169) 79 1vr5_A Oligopeptide ABC transp 60.1 9.6 0.00043 18.5 7.3 56 2-57 365-423 (547) 80 2iks_A DNA-binding transcripti 59.4 9.9 0.00044 18.4 8.0 98 5-104 22-133 (293) 81 2ip4_A PURD, phosphoribosylami 59.0 10 0.00045 18.4 4.4 52 4-60 1-71 (417) 82 3gbv_A Putative LACI-family tr 59.0 10 0.00045 18.4 7.5 84 2-85 7-104 (304) 83 1vee_A Proline-rich protein fa 58.8 6.2 0.00028 19.6 3.1 23 3-25 74-96 (134) 84 3h75_A Periplasmic sugar-bindi 58.6 10 0.00046 18.4 8.1 79 4-83 4-94 (350) 85 2qu7_A Putative transcriptiona 58.5 5.7 0.00026 19.8 2.9 93 6-104 11-117 (288) 86 1sg0_A NRH dehydrogenase [quin 58.2 10 0.00046 18.3 6.3 35 3-37 2-39 (230) 87 3kcq_A Phosphoribosylglycinami 57.7 10 0.00045 18.4 4.0 36 1-39 6-41 (215) 88 3gk5_A Uncharacterized rhodane 57.2 5 0.00022 20.2 2.4 39 2-44 54-92 (108) 89 1iow_A DD-ligase, DDLB, D-ALA\ 57.1 9.5 0.00042 18.5 3.8 79 5-84 4-89 (306) 90 2qzs_A Glycogen synthase; glyc 56.5 11 0.00049 18.1 5.6 37 4-42 1-45 (485) 91 3cs3_A Sugar-binding transcrip 56.5 11 0.00049 18.1 7.4 86 17-104 24-113 (277) 92 2hqr_A Putative transcriptiona 56.2 11 0.0005 18.1 7.8 72 4-83 1-76 (223) 93 1ni5_A Putative cell cycle pro 55.7 11 0.00051 18.1 7.5 69 3-83 13-81 (433) 94 3k4h_A Putative transcriptiona 55.5 12 0.00051 18.0 8.7 98 5-104 10-126 (292) 95 2wja_A Putative acid phosphata 55.5 12 0.00051 18.0 8.0 66 4-74 27-121 (168) 96 2dri_A D-ribose-binding protei 55.3 12 0.00052 18.0 7.2 69 17-85 17-92 (271) 97 1tq1_A AT5G66040, senescence-a 54.9 9.8 0.00044 18.5 3.6 40 2-45 81-121 (129) 98 3e9m_A Oxidoreductase, GFO/IDH 54.7 12 0.00053 18.0 6.4 92 2-102 4-116 (330) 99 1e5d_A Rubredoxin\:oxygen oxid 54.6 12 0.00053 18.0 9.9 94 4-104 253-359 (402) 100 3g5j_A Putative ATP/GTP bindin 54.1 12 0.00054 17.9 4.2 41 5-49 92-132 (134) 101 1xww_A Low molecular weight ph 53.4 12 0.00056 17.8 5.7 68 3-72 5-104 (157) 102 3ce9_A Glycerol dehydrogenase; 52.9 13 0.00057 17.8 7.7 79 4-84 35-121 (354) 103 2vpi_A GMP synthase; guanine m 52.7 13 0.00057 17.8 4.5 75 3-81 24-102 (218) 104 1qxn_A SUD, sulfide dehydrogen 52.6 11 0.00049 18.1 3.5 22 4-25 83-104 (137) 105 3hix_A ALR3790 protein; rhodan 52.3 7.6 0.00034 19.1 2.7 24 2-25 51-74 (106) 106 1ydw_A AX110P-like protein; st 51.7 13 0.00059 17.7 8.5 95 1-101 4-119 (362) 107 1wv9_A Rhodanese homolog TT165 51.6 9.7 0.00043 18.5 3.1 27 3-33 53-79 (94) 108 3a2k_A TRNA(Ile)-lysidine synt 50.5 14 0.00062 17.6 4.5 37 2-38 17-53 (464) 109 1ytl_A Acetyl-COA decarbonylas 50.4 14 0.00062 17.6 4.0 31 5-37 37-67 (174) 110 2hhg_A Hypothetical protein RP 49.9 12 0.00053 18.0 3.4 23 3-25 86-108 (139) 111 1dl5_A Protein-L-isoaspartate 49.9 14 0.0006 17.6 3.6 80 2-81 75-175 (317) 112 3foj_A Uncharacterized protein 49.7 8.8 0.00039 18.7 2.7 29 2-34 55-83 (100) 113 2der_A TRNA-specific 2-thiouri 49.5 12 0.00054 17.9 3.3 73 2-85 16-88 (380) 114 3ilm_A ALR3790 protein; rhodan 49.4 10 0.00046 18.4 3.0 40 2-45 55-95 (141) 115 2rgy_A Transcriptional regulat 49.3 15 0.00065 17.5 10.3 102 1-104 5-123 (290) 116 2vvp_A Ribose-5-phosphate isom 49.2 4.8 0.00021 20.3 1.3 50 5-60 64-114 (162) 117 2gek_A Phosphatidylinositol ma 49.2 15 0.00065 17.4 4.2 37 2-40 19-61 (406) 118 2vvr_A Ribose-5-phosphate isom 47.3 5.4 0.00024 20.0 1.3 52 4-61 60-112 (149) 119 2ekl_A D-3-phosphoglycerate de 47.2 16 0.0007 17.3 6.9 54 2-62 4-58 (313) 120 3da8_A Probable 5'-phosphoribo 47.0 16 0.0007 17.2 6.3 62 1-86 10-71 (215) 121 1gmx_A GLPE protein; transfera 46.8 15 0.00066 17.4 3.5 40 2-45 57-97 (108) 122 3e61_A Putative transcriptiona 45.9 16 0.00073 17.1 10.7 85 16-103 23-116 (277) 123 2h0a_A TTHA0807, transcription 45.3 17 0.00075 17.1 5.7 94 6-104 2-109 (276) 124 1rtt_A Conserved hypothetical 45.0 6.8 0.0003 19.4 1.5 83 1-84 4-117 (193) 125 1u0t_A Inorganic polyphosphate 45.0 17 0.00076 17.1 7.4 99 2-101 3-129 (307) 126 1mvl_A PPC decarboxylase athal 44.9 17 0.00076 17.0 6.3 81 2-84 18-141 (209) 127 1jkx_A GART;, phosphoribosylgl 44.8 17 0.00076 17.0 4.7 33 4-39 1-33 (212) 128 3e18_A Oxidoreductase; dehydro 44.5 17 0.00077 17.0 7.7 93 1-102 3-114 (359) 129 2glx_A 1,5-anhydro-D-fructose 44.3 17 0.00078 17.0 6.2 85 4-102 25-111 (332) 130 3gt7_A Sensor protein; structu 44.1 18 0.00078 17.0 6.4 80 1-84 5-90 (154) 131 3dty_A Oxidoreductase, GFO/IDH 43.9 18 0.00079 17.0 6.1 98 1-101 10-133 (398) 132 1ykg_A SIR-FP, sulfite reducta 43.8 18 0.00079 16.9 4.1 53 4-57 10-63 (167) 133 3d8u_A PURR transcriptional re 43.0 18 0.00081 16.9 6.9 98 5-104 5-115 (275) 134 2pln_A HP1043, response regula 43.0 18 0.00082 16.9 7.2 76 2-84 17-95 (137) 135 3loq_A Universal stress protei 42.8 18 0.00082 16.9 6.5 83 20-102 88-192 (294) 136 2ivn_A O-sialoglycoprotein end 42.5 15 0.00068 17.3 3.0 24 62-86 259-282 (330) 137 2noo_A NIKA, nickel-binding pe 42.4 19 0.00083 16.8 6.9 55 3-57 339-396 (502) 138 2k0z_A Uncharacterized protein 42.3 16 0.00072 17.2 3.1 39 2-44 55-93 (110) 139 2w70_A Biotin carboxylase; lig 41.4 19 0.00087 16.7 6.0 80 20-102 63-151 (449) 140 2yxe_A Protein-L-isoaspartate 40.5 10 0.00046 18.3 1.8 75 4-78 79-174 (215) 141 1h6d_A Precursor form of gluco 40.5 20 0.00089 16.6 7.5 97 2-102 82-199 (433) 142 3he8_A Ribose-5-phosphate isom 40.3 8 0.00036 19.0 1.3 52 4-61 59-111 (149) 143 3hly_A Flavodoxin-like domain; 39.9 20 0.00091 16.6 5.2 83 4-89 1-94 (161) 144 3id6_C Fibrillarin-like rRNA/T 38.7 10 0.00045 18.4 1.6 78 4-81 78-181 (232) 145 3ezx_A MMCP 1, monomethylamine 38.7 21 0.00095 16.5 7.0 99 3-103 92-214 (215) 146 2hna_A Protein MIOC, flavodoxi 38.3 18 0.0008 16.9 2.8 74 5-81 3-88 (147) 147 2zay_A Response regulator rece 38.2 22 0.00097 16.4 6.7 79 2-84 7-91 (147) 148 1s5p_A NAD-dependent deacetyla 37.8 8 0.00036 19.0 0.9 38 43-85 160-204 (235) 149 2ahr_A Putative pyrroline carb 37.5 22 0.001 16.4 4.2 55 1-60 1-72 (259) 150 2pv7_A T-protein [includes: ch 37.3 23 0.001 16.3 7.0 74 4-82 22-97 (298) 151 2jjm_A Glycosyl transferase, g 37.2 23 0.001 16.3 4.6 35 3-39 15-52 (394) 152 3lwb_A D-alanine--D-alanine li 37.1 23 0.001 16.3 3.8 33 1-33 8-44 (373) 153 1rrm_A Lactaldehyde reductase; 36.8 23 0.001 16.3 4.6 52 4-55 32-93 (386) 154 3bfj_A 1,3-propanediol oxidore 36.4 23 0.001 16.3 5.3 52 4-55 34-97 (387) 155 1t0a_A 2C-methyl-D-erythritol 36.4 20 0.00089 16.6 2.8 53 12-78 71-126 (159) 156 1gx1_A 2-C-methyl-D-erythritol 36.3 21 0.00092 16.6 2.9 53 12-78 70-125 (160) 157 2hma_A Probable tRNA (5-methyl 35.7 24 0.0011 16.2 4.4 73 3-86 9-81 (376) 158 2c4w_A 3-dehydroquinate dehydr 35.6 24 0.0011 16.2 7.1 78 1-81 7-110 (176) 159 1g8a_A Fibrillarin-like PRE-rR 35.6 24 0.0011 16.2 5.2 99 4-104 75-200 (227) 160 3db2_A Putative NADPH-dependen 35.0 25 0.0011 16.1 7.6 92 1-101 3-114 (354) 161 1nt2_A Fibrillarin-like PRE-rR 34.9 25 0.0011 16.1 3.1 100 4-104 59-183 (210) 162 1lss_A TRK system potassium up 34.8 25 0.0011 16.1 4.6 32 1-37 2-33 (140) 163 2yrx_A Phosphoribosylglycinami 34.5 25 0.0011 16.1 5.4 22 3-25 21-42 (451) 164 2g6t_A Uncharacterized protein 34.4 12 0.00051 18.0 1.3 70 5-79 3-86 (306) 165 1rzu_A Glycogen synthase 1; gl 34.3 25 0.0011 16.1 6.1 34 4-38 1-41 (485) 166 1wl8_A GMP synthase [glutamine 33.8 26 0.0011 16.0 7.2 73 4-81 1-78 (189) 167 3g85_A Transcriptional regulat 33.8 26 0.0011 16.0 8.0 96 6-103 14-121 (289) 168 1ta9_A Glycerol dehydrogenase; 33.6 26 0.0012 16.0 7.5 79 5-85 93-179 (450) 169 3k5p_A D-3-phosphoglycerate de 33.5 26 0.0012 16.0 7.5 86 2-101 14-122 (416) 170 3evz_A Methyltransferase; NYSG 33.4 26 0.0012 16.0 3.0 55 5-59 58-132 (230) 171 3knz_A Putative sugar binding 33.3 26 0.0012 16.0 3.2 74 6-84 225-306 (366) 172 3c48_A Predicted glycosyltrans 33.2 26 0.0012 15.9 4.9 36 1-38 18-66 (438) 173 2fz5_A Flavodoxin; alpha/beta 33.0 27 0.0012 15.9 9.0 79 6-89 2-92 (137) 174 2uzh_A 2C-methyl-D-erythritol 32.9 27 0.0012 15.9 4.6 54 11-78 73-129 (165) 175 2hjh_A NAD-dependent histone d 32.8 12 0.00055 17.9 1.2 12 5-16 48-59 (354) 176 1o1x_A Ribose-5-phosphate isom 32.6 15 0.00066 17.4 1.6 31 2-34 11-41 (155) 177 3e82_A Putative oxidoreductase 32.3 27 0.0012 15.9 6.4 80 1-86 5-102 (364) 178 2an1_A Putative kinase; struct 32.0 28 0.0012 15.8 7.1 98 4-102 6-118 (292) 179 1iv3_A 2-C-methyl-D-erythritol 31.8 28 0.0012 15.8 2.9 53 12-78 69-124 (152) 180 3l8m_A Probable thiamine pyrop 31.7 28 0.0012 15.8 5.6 80 4-103 1-88 (212) 181 3cf4_G Acetyl-COA decarbonylas 31.5 28 0.0013 15.8 8.7 101 4-104 35-170 (170) 182 3ic5_A Putative saccharopine d 31.1 29 0.0013 15.7 8.0 75 2-82 4-100 (118) 183 1obo_A Flavodoxin; electron tr 31.0 29 0.0013 15.7 4.4 50 5-57 3-53 (169) 184 2hcm_A Dual specificity protei 30.9 25 0.0011 16.1 2.5 65 3-75 89-154 (164) 185 3miz_A Putative transcriptiona 30.8 29 0.0013 15.7 3.4 98 4-104 13-126 (301) 186 1yob_A Flavodoxin 2, flavodoxi 30.7 21 0.00094 16.5 2.1 51 5-57 2-53 (179) 187 1zu0_A Chitin oligosaccharide 30.7 29 0.0013 15.7 7.0 56 2-57 350-408 (529) 188 1lc0_A Biliverdin reductase A; 30.6 29 0.0013 15.7 7.3 98 1-102 5-114 (294) 189 3c5y_A Ribose/galactose isomer 30.5 21 0.00095 16.5 2.1 32 3-34 19-52 (231) 190 3k9c_A Transcriptional regulat 30.5 29 0.0013 15.7 6.3 84 16-104 26-121 (289) 191 3h1g_A Chemotaxis protein CHEY 30.0 30 0.0013 15.6 7.5 78 2-83 4-89 (129) 192 2pk8_A Uncharacterized protein 29.6 30 0.0014 15.6 4.8 31 42-72 27-58 (103) 193 3kht_A Response regulator; PSI 29.2 31 0.0014 15.5 7.8 79 2-84 4-90 (144) 194 3d1p_A Putative thiosulfate su 29.1 31 0.0014 15.5 2.8 40 3-46 91-131 (139) 195 2b4y_A NAD-dependent deacetyla 28.7 19 0.00086 16.7 1.6 14 70-83 232-245 (271) 196 3fpf_A Mtnas, putative unchara 28.6 32 0.0014 15.5 5.0 66 3-70 123-208 (298) 197 3ip3_A Oxidoreductase, putativ 28.4 32 0.0014 15.5 7.5 73 22-101 41-115 (337) 198 3kux_A Putative oxidoreductase 27.9 33 0.0014 15.4 6.1 89 1-100 5-111 (352) 199 2axq_A Saccharopine dehydrogen 27.8 33 0.0015 15.4 7.4 72 5-82 25-119 (467) 200 1wy5_A TILS, hypothetical UPF0 27.7 33 0.0015 15.4 6.0 69 4-84 25-93 (317) 201 2nt2_A Protein phosphatase sli 27.3 23 0.001 16.3 1.8 15 4-18 82-96 (145) 202 2qm3_A Predicted methyltransfe 27.3 33 0.0015 15.3 3.2 39 21-59 209-250 (373) 203 3jrx_A Acetyl-COA carboxylase 27.2 34 0.0015 15.3 4.7 72 8-79 113-196 (587) 204 1t5b_A Acyl carrier protein ph 27.0 34 0.0015 15.3 6.2 34 4-37 2-39 (201) 205 3klb_A Putative flavoprotein; 27.0 13 0.0006 17.7 0.6 93 3-103 4-132 (162) 206 2f1k_A Prephenate dehydrogenas 27.0 34 0.0015 15.3 9.2 73 4-82 1-89 (279) 207 3huu_A Transcription regulator 26.9 34 0.0015 15.3 9.1 98 5-104 24-139 (305) 208 2qjg_A Putative aldolase MJ040 26.6 34 0.0015 15.3 4.2 93 4-102 116-225 (273) 209 2ppw_A Conserved domain protei 26.6 22 0.00097 16.4 1.6 34 1-34 1-36 (216) 210 2vxo_A GMP synthase [glutamine 26.3 35 0.0015 15.2 3.3 26 4-29 241-266 (697) 211 1q1a_A HST2 protein; ternary c 26.1 24 0.0011 16.2 1.7 32 73-104 235-277 (289) 212 3hn7_A UDP-N-acetylmuramate-L- 26.0 35 0.0016 15.2 5.4 77 2-83 18-112 (524) 213 1qzu_A Hypothetical protein MD 25.7 36 0.0016 15.2 5.9 83 2-84 18-141 (206) 214 3emu_A Leucine rich repeat and 25.7 36 0.0016 15.2 2.6 15 3-17 87-101 (161) 215 1jq5_A Glycerol dehydrogenase; 25.6 36 0.0016 15.2 6.0 78 4-84 32-119 (370) 216 1wrm_A Dual specificity phosph 25.3 33 0.0015 15.4 2.4 17 3-19 83-99 (165) 217 2vzf_A NADH-dependent FMN redu 25.2 37 0.0016 15.1 5.9 80 3-83 2-110 (197) 218 2ftc_A Mitochondrial ribosomal 25.1 37 0.0016 15.1 7.9 83 2-102 30-117 (189) 219 2pmp_A 2-C-methyl-D-erythritol 24.7 37 0.0017 15.1 2.5 53 12-78 72-127 (160) 220 1wzn_A SAM-dependent methyltra 24.7 37 0.0017 15.1 3.9 73 5-78 44-142 (252) 221 3cea_A MYO-inositol 2-dehydrog 24.5 38 0.0017 15.0 8.4 93 2-102 7-120 (346) 222 2fb9_A D-alanine:D-alanine lig 24.3 21 0.00092 16.6 1.1 37 49-85 75-112 (322) 223 2j16_A SDP-1, tyrosine-protein 24.3 35 0.0016 15.2 2.3 13 5-17 119-131 (182) 224 1jbe_A Chemotaxis protein CHEY 24.1 38 0.0017 15.0 5.6 80 1-84 2-88 (128) 225 2gno_A DNA polymerase III, gam 24.0 39 0.0017 15.0 5.7 52 50-103 49-108 (305) 226 3ezz_A Dual specificity protei 23.9 36 0.0016 15.1 2.3 16 3-18 81-96 (144) 227 3euw_A MYO-inositol dehydrogen 23.9 39 0.0017 15.0 8.4 87 1-100 2-109 (344) 228 3keg_A FMN-dependent NADH-azor 23.7 39 0.0017 15.0 6.7 64 4-67 2-113 (212) 229 3g17_A Similar to 2-dehydropan 23.6 39 0.0017 14.9 3.1 64 3-71 2-86 (294) 230 2o4u_X Dimeric dihydrodiol deh 23.6 39 0.0017 14.9 6.1 74 21-102 40-115 (334) 231 1vr6_A Phospho-2-dehydro-3-deo 23.4 40 0.0018 14.9 5.8 74 21-100 160-233 (350) 232 1p6q_A CHEY2; chemotaxis, sign 23.3 40 0.0018 14.9 5.8 78 1-83 4-89 (129) 233 1zzw_A Dual specificity protei 23.1 39 0.0017 15.0 2.4 14 5-18 85-98 (149) 234 3gdh_A Trimethylguanosine synt 22.7 41 0.0018 14.8 4.9 54 8-62 85-156 (241) 235 1z0s_A Probable inorganic poly 22.6 41 0.0018 14.8 7.2 93 1-103 27-123 (278) 236 3gfs_A FMN-dependent NADPH-azo 22.5 18 0.00081 16.9 0.6 25 4-28 1-28 (174) 237 3eua_A Putative fructose-amino 22.5 41 0.0018 14.8 4.4 83 5-87 194-282 (329) 238 2grv_A LPQW; substrate-binding 22.3 42 0.0019 14.8 7.1 54 2-55 408-465 (621) 239 2e0t_A Dual specificity phosph 22.3 35 0.0016 15.2 2.0 15 4-18 86-100 (151) 240 1gpj_A Glutamyl-tRNA reductase 22.0 42 0.0019 14.7 3.3 81 3-84 167-266 (404) 241 3f2v_A General stress protein 21.7 43 0.0019 14.7 4.3 64 4-67 2-84 (192) 242 1q14_A HST2 protein; histone d 21.7 26 0.0012 16.0 1.3 13 5-17 30-42 (361) 243 2a3n_A Putative glucosamine-fr 21.5 43 0.0019 14.7 4.2 78 5-87 219-307 (355) 244 2wmy_A WZB, putative acid phos 21.5 43 0.0019 14.7 4.6 64 4-73 9-102 (150) 245 1ka9_H Imidazole glycerol phos 21.2 44 0.002 14.6 5.0 67 3-81 2-81 (200) 246 2r0b_A Serine/threonine/tyrosi 21.2 39 0.0018 14.9 2.1 13 5-17 92-104 (154) 247 3ffr_A Phosphoserine aminotran 21.1 13 0.00057 17.8 -0.4 58 2-59 129-190 (362) 248 3dzb_A Prephenate dehydrogenas 21.1 44 0.002 14.6 6.0 66 2-72 4-87 (317) 249 1ma3_A SIR2-AF2, transcription 20.8 19 0.00084 16.8 0.4 35 70-104 205-246 (253) 250 1i2a_A 50S ribosomal protein L 20.8 45 0.002 14.6 5.2 81 2-101 56-147 (219) 251 2cuk_A Glycerate dehydrogenase 20.7 45 0.002 14.6 2.6 50 4-60 1-53 (311) 252 3glr_A NAD-dependent deacetyla 20.6 29 0.0013 15.7 1.3 12 5-16 25-36 (285) 253 1w96_A ACC, acetyl-coenzyme A 20.6 45 0.002 14.6 4.6 71 9-79 105-189 (554) 254 3kke_A LACI family transcripti 20.6 45 0.002 14.6 8.8 85 17-103 31-125 (303) 255 1dcf_A ETR1 protein; beta-alph 20.5 45 0.002 14.6 6.4 77 2-82 6-90 (136) 256 2rjn_A Response regulator rece 20.5 46 0.002 14.6 6.4 77 1-84 5-88 (154) 257 1vlj_A NADH-dependent butanol 20.3 46 0.002 14.5 5.8 52 4-55 44-106 (407) 258 3grc_A Sensor protein, kinase; 20.3 46 0.002 14.5 7.3 78 2-83 5-88 (140) 259 2oud_A Dual specificity protei 20.3 46 0.002 14.5 2.4 84 4-100 88-171 (177) 260 1m2k_A Silent information regu 20.3 29 0.0013 15.7 1.2 54 46-104 173-240 (249) 261 1vbf_A 231AA long hypothetical 20.2 46 0.002 14.5 2.2 80 2-81 70-165 (231) 262 3glk_A Acetyl-COA carboxylase 20.0 47 0.0021 14.5 4.7 71 9-79 98-180 (540) No 1 >1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferase, sugar transport, phosphorylation; NMR {Escherichia coli K12} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D Probab=99.97 E-value=1.5e-31 Score=204.42 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=94.6 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 97268998568630889999999999844982688873377898730678899988447888999999874428977871 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVAT 81 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I 81 (105) ++.||||||++|||||+|++||+++++++|+|++|+|+|++++.+.+++||+||||||+||+++++++.+. ++||.+| T Consensus 2 ~~k~IlL~C~~G~Sts~l~~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DviLlaPQv~~~~~~i~~~~~--~~pV~vI 79 (106) T 1e2b_A 2 EKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLP--NKPVEVI 79 (106) T ss_dssp CCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSS--SSCCCBC T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHC--CCCEEEE T ss_conf 98889998289602999999999999987998899995078998762488899987779888999999837--9998976 Q ss_pred CCHHHCCCCCCHHHHHHHHHHHCC Q ss_conf 813310115798899999998629 Q T0580 82 RGMEYIHLTKSPSKALQFVLEHYQ 105 (105) Q Consensus 82 ~~~~Y~~~~~dg~k~l~~i~~~l~ 105 (105) |+++| ++|||+++|+++++.++ T Consensus 80 ~~~~Y--g~~dg~~il~~al~li~ 101 (106) T 1e2b_A 80 DSLLY--GKVDGLGVLKAAVAAIK 101 (106) T ss_dssp CHHHH--TTTCTTHHHHHHHHHHH T ss_pred CHHHH--HCCCHHHHHHHHHHHHH T ss_conf 86870--05689999999999998 No 2 >1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli} Probab=99.15 E-value=4e-11 Score=85.02 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=77.6 Q ss_pred CCCEEEEEECCCCCHHHHH-HHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 9726899856863088999-999999984498268887337789873067889998844788899999987442897787 Q T0580 2 KELKVLVLCAGSGTSAQLA-NAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVA 80 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la-~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~ 80 (105) ++.|||++|++|++||.|+ .++++..++.|+++++.+++..++....+++|+++..++++..+ .++|+.. T Consensus 20 ~kkkIlvVCgsGigTS~~l~~klk~~l~~~~i~~~v~~~~~~e~~~~~~~~Diii~t~~l~~~~---------~~iPvi~ 90 (113) T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSF---------GDIPLVH 90 (113) T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTSTTSCSEEEESSCCCCCS---------TTCCEEC T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHCCCCCCEEEEECCCCCCC---------CCCCEEE T ss_conf 5228999999968999999999999999849864123411776631236776599950233115---------9998899 Q ss_pred ECCHHHCCCCCCHHHHHHHHHHHCC Q ss_conf 1813310115798899999998629 Q T0580 81 TRGMEYIHLTKSPSKALQFVLEHYQ 105 (105) Q Consensus 81 I~~~~Y~~~~~dg~k~l~~i~~~l~ 105 (105) +.|-.. -+|.++..+.+++-|| T Consensus 91 v~p~lt---~~d~~~~~~kI~~~Lk 112 (113) T 1tvm_A 91 GMPFVS---GVGIEALQNKILTILQ 112 (113) T ss_dssp CHHHHH---SSSHHHHHHHHHHHHH T ss_pred EEECCC---CCCHHHHHHHHHHHHC T ss_conf 974688---4689999999999857 No 3 >3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans} Probab=98.94 E-value=5.4e-09 Score=72.57 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=73.6 Q ss_pred CCCEEEEEECCCCCHH-HHHHHHHHHHHHCCC-CEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 9726899856863088-999999999984498-26888733778987306788999884478889999998744289778 Q T0580 2 KELKVLVLCAGSGTSA-QLANAINEGANLTEV-RVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIV 79 (105) Q Consensus 2 k~~kIlL~C~~G~STs-~la~km~~~a~~~~~-~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~ 79 (105) +.+||+++|++|+.|| +++.++++...+.|+ ++++..++..+.....+++|+|+....+...++ ...++||. T Consensus 17 ~m~KIlvvCgsGigTS~ml~~klk~~l~~~gi~~~~v~~~~~~~~~~~~~~~DlIitt~~l~~~~~------~~~~~~Vi 90 (110) T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLASNYDIVVASNHLIHELD------GRTNGKLI 90 (110) T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHGGGCSEEEEETTTGGGTT------TSCSSEEE T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCCEEEEECCHHHHHHC------CCCCCCEE T ss_conf 622899999997349999999999999876983689997038765457789649998943346640------56899789 Q ss_pred EECCHHHCCCCCCHHHHHHHHHHHCC Q ss_conf 71813310115798899999998629 Q T0580 80 ATRGMEYIHLTKSPSKALQFVLEHYQ 105 (105) Q Consensus 80 ~I~~~~Y~~~~~dg~k~l~~i~~~l~ 105 (105) .+.+. + |.+.+-+.+.+.|| T Consensus 91 ~v~~~----l--~~~ei~~ki~~~LK 110 (110) T 3czc_A 91 GLDNL----M--DDNEIKTKLEEALK 110 (110) T ss_dssp EESST----T--CHHHHHHHHHHHHC T ss_pred EEECC----C--CHHHHHHHHHHHHC T ss_conf 98478----9--97999999999859 No 4 >1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B* Probab=97.93 E-value=3e-05 Score=50.73 Aligned_cols=91 Identities=11% Similarity=0.115 Sum_probs=61.1 Q ss_pred CCCCEEEEEECCCCCHHHHHH-HHHHHHHHCCCC-EEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCE Q ss_conf 997268998568630889999-999999844982-688873377898730678899988447888999999874428977 Q T0580 1 SKELKVLVLCAGSGTSAQLAN-AINEGANLTEVR-VIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQI 78 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~-km~~~a~~~~~~-~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv 78 (105) ++.-||+++|++|+.||.|++ ++++..++.|++ ..+...... ....++|+|...-.+.-. +++... ++|+ T Consensus 11 ~~vkkIlvvC~~GiGSS~ml~~~l~~~l~~~~i~~~~~~~~~~~---~~~~~~DlIIst~~l~~~---~~~~~~--~~~v 82 (125) T 1vkr_A 11 SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAIN---NLPPDVDLVITHRDLTER---AMRQVP--QAQH 82 (125) T ss_dssp CCCCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTT---CCCTTCSEEEEEHHHHHH---HHHHCT--TSEE T ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEHH---CCCCCCCEEEECHHHHHH---HHHCCC--CCEE T ss_conf 54468999989996589999999999999849971578765152---178898799988788899---982299--9839 Q ss_pred EEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 871813310115798899999998 Q T0580 79 VATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 79 ~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) ..+.+..= .-+-+++.+.+.+ T Consensus 83 i~V~~~L~---~~ei~~l~~~l~~ 103 (125) T 1vkr_A 83 ISLTNFLD---SGLYTSLTERLVA 103 (125) T ss_dssp EEESCTTC---HHHHHHHHHHHHH T ss_pred EEEECCCC---HHHHHHHHHHHHH T ss_conf 99824899---7999999999998 No 5 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Probab=96.33 E-value=0.057 Score=31.54 Aligned_cols=86 Identities=17% Similarity=0.044 Sum_probs=64.2 Q ss_pred CCCEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECHHH---HHHHCCCCCEEEEC---------HHHHHHHHHHH Q ss_conf 972689985686-308899999999998449826888733778---98730678899988---------44788899999 Q T0580 2 KELKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAYGA---HYDIMGVYDLIILA---------PQVRSYYREMK 68 (105) Q Consensus 2 k~~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~~~---~~~~~~~~DiiLla---------PQv~~~~~~ik 68 (105) ++-||+++..+. .+|-.||+.+.+.+++.|.++.+.-.+... ..+.+.++|.|++| |+++..++.++ T Consensus 255 ~~~ki~IvY~S~~GnT~~~A~~i~~g~~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~GsPt~~~~~~~~~~~~~~~l~ 334 (414) T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNNTMMPSVAAALNYVR 334 (414) T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHH T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHH T ss_conf 68549999988987699999999999985798489998357775678999863896999667768866689999999964 Q ss_pred HHHHHCCCCEEEECCHHHCCC Q ss_conf 987442897787181331011 Q T0580 69 VDAERLGIQIVATRGMEYIHL 89 (105) Q Consensus 69 ~~~~~~~ipv~~I~~~~Y~~~ 89 (105) ..-.-.|+|+++.-. |+|. T Consensus 335 ~~~~~~gK~~~~Fgs--~G~~ 353 (414) T 2q9u_A 335 GLTLIKGKPAFAFGA--FGWS 353 (414) T ss_dssp HHTTTTTSBEEEEEE--ESSS T ss_pred CCCCCCCCEEEEEEC--CCCC T ss_conf 420028988999976--7887 No 6 >1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Probab=95.28 E-value=0.022 Score=33.96 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=57.5 Q ss_pred CCCCEEEEEE-CCCCCHHHHHHHHHHHHHHCCCCEEEEEECHH------------------------HHHHHCCCCCEEE Q ss_conf 9972689985-68630889999999999844982688873377------------------------8987306788999 Q T0580 1 SKELKVLVLC-AGSGTSAQLANAINEGANLTEVRVIANSGAYG------------------------AHYDIMGVYDLII 55 (105) Q Consensus 1 ~k~~kIlL~C-~~G~STs~la~km~~~a~~~~~~~~i~A~~~~------------------------~~~~~~~~~DiiL 55 (105) |++|||+++- +...+|..|++.+.+.+++.|.++++...... ...+.+.++|.|+ T Consensus 4 ~~~mKvlVvy~S~~GnT~~lA~~ia~g~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 83 (211) T 1ydg_A 4 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 83 (211) T ss_dssp -CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEE T ss_conf 99978999997998189999999999987569779999866767642022466776078764551566566676388659 Q ss_pred E---------CHHHHHHHHHHHHHH---HHCCCCEEEEC Q ss_conf 8---------844788899999987---44289778718 Q T0580 56 L---------APQVRSYYREMKVDA---ERLGIQIVATR 82 (105) Q Consensus 56 l---------aPQv~~~~~~ik~~~---~~~~ipv~~I~ 82 (105) + +||++..++...... .-.|+|..... T Consensus 84 lgsP~~~g~~s~~~k~flDr~~~l~~~~~l~gK~~a~~~ 122 (211) T 1ydg_A 84 FSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMT 122 (211) T ss_dssp EEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEE T ss_pred EECCEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 823501121360777788874318765230497899996 No 7 >2r4q_A Phosphotransferase system (PTS) fructose- specific enzyme iiabc component; fructose specific IIB subunit, PFAM02379, structural genomics; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2 Probab=95.23 E-value=0.0051 Score=37.66 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=67.2 Q ss_pred EEEEE--ECCCCCHHHHHH-HHHHHHHHCCCCEEEEEECHHHH----H-HHCCCCCEEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 68998--568630889999-99999984498268887337789----8-7306788999884478889999998744289 Q T0580 5 KVLVL--CAGSGTSAQLAN-AINEGANLTEVRVIANSGAYGAH----Y-DIMGVYDLIILAPQVRSYYREMKVDAERLGI 76 (105) Q Consensus 5 kIlL~--C~~G~STs~la~-km~~~a~~~~~~~~i~A~~~~~~----~-~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~i 76 (105) ||+.+ |-.|.-.++|+- ++++++++.|.++.|+--+.... . +.+.+.|+|+++--+.--. +.+. |. T Consensus 4 KivaVTACptGiAHTymAAeaLe~aA~~lG~~ikVEtqG~~G~en~Lt~~~I~~Ad~VIiA~d~~id~----~RF~--gk 77 (106) T 2r4q_A 4 KILAVTACPTGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADKQVEM----ERFK--GK 77 (106) T ss_dssp CEEEEEECSCC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESSCCCC----GGGT--TS T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCEEEEEECCCCCH----HHCC--CC T ss_conf 49999548872757999999999999987996999955877877889999998599999983466777----7759--98 Q ss_pred CEEEECCHHHCCCCCCHHHHHHHHHHH Q ss_conf 778718133101157988999999986 Q T0580 77 QIVATRGMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 77 pv~~I~~~~Y~~~~~dg~k~l~~i~~~ 103 (105) |+...+..+- -.|++++++.+++. T Consensus 78 ~v~~~~~~~a---i~~~~~~i~~al~~ 101 (106) T 2r4q_A 78 RVLQVPVTAG---IRRPQELIEKAMNQ 101 (106) T ss_dssp BEEEECHHHH---HHCHHHHHHHHHTT T ss_pred EEEEECHHHH---HHHHHHHHHHHHHC T ss_conf 5799568999---87899999999864 No 8 >2r48_A Phosphotransferase system (PTS) mannose-specific enzyme iibca component; PTS system, fructose specific IIB subunit, PFAM02379, PSI-2; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2 Probab=94.82 E-value=0.018 Score=34.48 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=68.5 Q ss_pred CEEEEEECCCCCHHHHHH-HHHHHHHHCCCCEEEEEECHHHH----H-HHCCCCCEEEECHHHHHHHHHHHHHHHHCCCC Q ss_conf 268998568630889999-99999984498268887337789----8-73067889998844788899999987442897 Q T0580 4 LKVLVLCAGSGTSAQLAN-AINEGANLTEVRVIANSGAYGAH----Y-DIMGVYDLIILAPQVRSYYREMKVDAERLGIQ 77 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~-km~~~a~~~~~~~~i~A~~~~~~----~-~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ip 77 (105) +=..-.|-.|.-.++|+. ++++++++.|.++.|+--+.... . +.+++.|+|+++--+.-- .+.+. |.| T Consensus 5 iv~VTaCptGiAHTymAAeaLekaAk~~G~~ikVEtqGa~G~en~Lt~~dI~~Ad~VIiA~D~~id----~~RF~--gk~ 78 (106) T 2r48_A 5 LLAITSCPNGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADRSVN----KDRFI--GKK 78 (106) T ss_dssp EEEEEECSSCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSCCC----CGGGT--TSB T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCEEEEEECCCCC----HHHCC--CCE T ss_conf 999955985287999999999999998799699995587787788999999859999998357678----87759--982 Q ss_pred EEEECCHHHCCCCCCHHHHHHHHHHH Q ss_conf 78718133101157988999999986 Q T0580 78 IVATRGMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 78 v~~I~~~~Y~~~~~dg~k~l~~i~~~ 103 (105) +...+..+- -.|++++++.+++. T Consensus 79 v~~~~v~~a---i~~~~~vi~~a~~~ 101 (106) T 2r48_A 79 LLSVGVQDG---IRKPEELIQKALNG 101 (106) T ss_dssp EEEECHHHH---HHCHHHHHHHHHHC T ss_pred EEEECHHHH---HHCHHHHHHHHHHC T ss_conf 699558999---87999999999845 No 9 >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Probab=94.68 E-value=0.12 Score=29.62 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=56.7 Q ss_pred CCEEEEEECCCCCHHH---HHHHHHHHHHHCCCCEEEEEECHH------HHHHHC-CCCCEEEECHHHHHHHHHHHHHHH Q ss_conf 7268998568630889---999999999844982688873377------898730-678899988447888999999874 Q T0580 3 ELKVLVLCAGSGTSAQ---LANAINEGANLTEVRVIANSGAYG------AHYDIM-GVYDLIILAPQVRSYYREMKVDAE 72 (105) Q Consensus 3 ~~kIlL~C~~G~STs~---la~km~~~a~~~~~~~~i~A~~~~------~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~ 72 (105) +++|-+++.+ +++++ +.+.+++++++.|..+.+...... .++..+ .++|.|++.|.-.......-+.+. T Consensus 2 P~~Ig~~~~~-~~~~~~~~~~~~~~~~a~~~G~~~~~~~~~~~~~~q~~~i~~li~~~vD~IIv~~~~~~~~~~~~~~a~ 80 (306) T 2vk2_A 2 PLTVGFSQVG-SESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAK 80 (306) T ss_dssp CCEEEEEECC-CCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHH T ss_pred CEEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH T ss_conf 8499999689-989999999999999999859989999589999999999999997599999983256541168899998 Q ss_pred HCCCCEEEECCH Q ss_conf 428977871813 Q T0580 73 RLGIQIVATRGM 84 (105) Q Consensus 73 ~~~ipv~~I~~~ 84 (105) +.|+|+..++.. T Consensus 81 ~~giPvv~~d~~ 92 (306) T 2vk2_A 81 DAEIPVFLLDRS 92 (306) T ss_dssp HTTCCEEEESSC T ss_pred HCCCCEEEECCC T ss_conf 619975774454 No 10 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Probab=93.96 E-value=0.34 Score=26.96 Aligned_cols=94 Identities=19% Similarity=0.052 Sum_probs=64.9 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHCCCCCEEEEC---------HHHHHHHHHHHHH Q ss_conf 2689985686-3088999999999984498268887337---7898730678899988---------4478889999998 Q T0580 4 LKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAY---GAHYDIMGVYDLIILA---------PQVRSYYREMKVD 70 (105) Q Consensus 4 ~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~---~~~~~~~~~~DiiLla---------PQv~~~~~~ik~~ 70 (105) =||+++..+. ..|-.||+.+.+.+++.|+++.+.-... ++..+.+.++|.+++| |++...++.++.. T Consensus 257 ~kv~Ivy~S~~GnT~~~A~~i~~g~~~~g~~v~~~~~~~~~~~~~~~~i~~~d~ii~Gspt~~~~~~~~~~~fl~~l~~~ 336 (404) T 2ohh_A 257 ERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGL 336 (404) T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHH T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 72879994076559999999999986379958999937899789999998679559970652775679999999997656 Q ss_pred HH--HCCCCEEEECCHHHCCCCCCHHHHHHHHHHH Q ss_conf 74--4289778718133101157988999999986 Q T0580 71 AE--RLGIQIVATRGMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 71 ~~--~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~~ 103 (105) .. ..|+|+.+.-. |+|. |+ +++.+.+. T Consensus 337 ~~~~~~gK~~~~Fgs--~G~~---g~-a~~~~~~~ 365 (404) T 2ohh_A 337 KFNRTLTRKALVFGS--MGGN---GG-ATGTMKEL 365 (404) T ss_dssp CGGGTCCEEEEEEEE--ESSS---CC-HHHHHHHH T ss_pred HHCCCCCCEEEEEEC--CCCC---HH-HHHHHHHH T ss_conf 544557986999982--4887---29-99999999 No 11 >3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} Probab=92.92 E-value=0.38 Score=26.74 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=53.9 Q ss_pred CCEEEEEECCCCCH---HHHHHHHHHHHHHCCCCEEEEEECHHH------HHHH-CCCCCEEEECHHHHHHHHHHHHHHH Q ss_conf 72689985686308---899999999998449826888733778------9873-0678899988447888999999874 Q T0580 3 ELKVLVLCAGSGTS---AQLANAINEGANLTEVRVIANSGAYGA------HYDI-MGVYDLIILAPQVRSYYREMKVDAE 72 (105) Q Consensus 3 ~~kIlL~C~~G~ST---s~la~km~~~a~~~~~~~~i~A~~~~~------~~~~-~~~~DiiLlaPQv~~~~~~ik~~~~ 72 (105) +-|..=+.-..++. +-|.+.++++++++|..+.+....... ++.. ..++|.|++.|--.......-+.+. T Consensus 7 ~~~~IGvi~~~~~~~f~~~~~~gi~~~a~~~gy~l~~~~~~~~~~~e~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~a~ 86 (293) T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAK 86 (293) T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHH T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH T ss_conf 99989999978987999999999999999879989999799998999999999997699899971566301599999999 Q ss_pred HCCCCEEEECCH Q ss_conf 428977871813 Q T0580 73 RLGIQIVATRGM 84 (105) Q Consensus 73 ~~~ipv~~I~~~ 84 (105) +.|+|++.++.. T Consensus 87 ~~~IPvV~~~~~ 98 (293) T 3l6u_A 87 KAGIPVFAIDRM 98 (293) T ss_dssp HTTCCEEEESSC T ss_pred HCCCEEEEECCC T ss_conf 769929998877 No 12 >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Probab=92.28 E-value=0.15 Score=29.02 Aligned_cols=83 Identities=19% Similarity=0.162 Sum_probs=56.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHH-------------------HHHHHCCCCCEEEEC---- Q ss_conf 997268998568630889999999999844982688873377-------------------898730678899988---- Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYG-------------------AHYDIMGVYDLIILA---- 57 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~-------------------~~~~~~~~~DiiLla---- 57 (105) +.+.|||++..+-.+|.-|++.+.+.+++.|.++++.-.... ...+.+.++|.|++| T Consensus 2 ~~k~kilivy~S~GnT~~la~~ia~g~~~~G~ev~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~aD~ii~gsP~y 81 (199) T 2zki_A 2 SCKPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTR 81 (199) T ss_dssp -CCCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECB T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCC T ss_conf 99974999984856999999999999875598899997355574877642044545671553199998689779953765 Q ss_pred -----HHHHHHHHHHHHHH---HHCCCCEEEECC Q ss_conf -----44788899999987---442897787181 Q T0580 58 -----PQVRSYYREMKVDA---ERLGIQIVATRG 83 (105) Q Consensus 58 -----PQv~~~~~~ik~~~---~~~~ipv~~I~~ 83 (105) ||++..++.+.... .-.|.|...+-. T Consensus 82 ~~~~~~~~k~f~Drl~~~~~~~~~~gK~~~~f~s 115 (199) T 2zki_A 82 YGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTE 115 (199) T ss_dssp TTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEE T ss_conf 7765726675998866887368769988999998 No 13 >8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Probab=91.76 E-value=0.72 Score=25.09 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=55.5 Q ss_pred CCCEEEEEECCCCC--HHHHHHHHHHHHHHCCCCEEEEEECHHH-----HHHH-CCCCCEEEECHHHHHHHHHHHHHHHH Q ss_conf 97268998568630--8899999999998449826888733778-----9873-06788999884478889999998744 Q T0580 2 KELKVLVLCAGSGT--SAQLANAINEGANLTEVRVIANSGAYGA-----HYDI-MGVYDLIILAPQVRSYYREMKVDAER 73 (105) Q Consensus 2 k~~kIlL~C~~G~S--Ts~la~km~~~a~~~~~~~~i~A~~~~~-----~~~~-~~~~DiiLlaPQv~~~~~~ik~~~~~ 73 (105) +.+||-++=...-+ -.-+.+-++++|+++|.++.+.+..-.+ ++.. ...+|.|++.|--....+.+-+.+.+ T Consensus 1 e~~~Ig~i~~~~~~~~~~~~~~g~~~~a~~~g~~~i~~~~~d~~~q~~~i~~li~~~~dgiIi~~~~~~~~~~~~~~a~~ 80 (306) T 8abp_A 1 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 80 (306) T ss_dssp -CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH T ss_conf 97399999799989899999999999999729999998799999999999999975989999967875235999999997 Q ss_pred CCCCEEEECCH Q ss_conf 28977871813 Q T0580 74 LGIQIVATRGM 84 (105) Q Consensus 74 ~~ipv~~I~~~ 84 (105) .|+||+.++.. T Consensus 81 ~gIPvv~~~~~ 91 (306) T 8abp_A 81 YDMKVIAVDDQ 91 (306) T ss_dssp TTCEEEEESSC T ss_pred CCCCEEEEECC T ss_conf 59988999625 No 14 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Probab=91.65 E-value=0.74 Score=25.02 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=64.3 Q ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEE------EECHHHHHHHCCCCCEEEEC---------HHHHHHHHH Q ss_conf 72689985686-308899999999998449826888------73377898730678899988---------447888999 Q T0580 3 ELKVLVLCAGS-GTSAQLANAINEGANLTEVRVIAN------SGAYGAHYDIMGVYDLIILA---------PQVRSYYRE 66 (105) Q Consensus 3 ~~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~------A~~~~~~~~~~~~~DiiLla---------PQv~~~~~~ 66 (105) +-||+++..+- .+|-.+|+.+.+.+.+.|++..+. ....+++...+.++|.+++| |+++..+++ T Consensus 265 ~~kv~Ivy~S~~GnT~~~A~~i~~~l~~~G~~~~~~~~~d~~~~~~~~~~~~~~~~d~~i~GspT~~~~~~p~~~~~l~~ 344 (410) T 1vme_A 265 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLE 344 (410) T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECEETTEECHHHHHHHHH T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH T ss_conf 65048999404548999999999999866992499985227878622556777329989998677388766899999999 Q ss_pred HHHHHHHCCCCEEEECCHHHCCC Q ss_conf 99987442897787181331011 Q T0580 67 MKVDAERLGIQIVATRGMEYIHL 89 (105) Q Consensus 67 ik~~~~~~~ipv~~I~~~~Y~~~ 89 (105) ++... ..|.++++.- -|+|. T Consensus 345 l~~~~-~~~k~~~~fG--syGw~ 364 (410) T 1vme_A 345 IIDKA-NYEKPVLVFG--VHGWA 364 (410) T ss_dssp HHHHC-CCCCEEEEEE--ECCCC T ss_pred HHHCC-CCCCEEEEEE--ECCCC T ss_conf 87354-4889899999--27987 No 15 >3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Probab=91.39 E-value=0.79 Score=24.86 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=61.5 Q ss_pred CCCEEEEEECCCCCH-------HHHHHHHHHHHHHCCCCEEEEEECHHH-----HHHHC--CCCCEEEECHHHHHHHHHH Q ss_conf 972689985686308-------899999999998449826888733778-----98730--6788999884478889999 Q T0580 2 KELKVLVLCAGSGTS-------AQLANAINEGANLTEVRVIANSGAYGA-----HYDIM--GVYDLIILAPQVRSYYREM 67 (105) Q Consensus 2 k~~kIlL~C~~G~ST-------s~la~km~~~a~~~~~~~~i~A~~~~~-----~~~~~--~~~DiiLlaPQv~~~~~~i 67 (105) |..+|-|+..+.-+. +-+.+.+++++.++|..+.+....... ..+.+ ..+|.+++.|--. -+.+ T Consensus 6 ~t~~Igl~~~~~~~~~~~npf~~~~~~gi~~~a~~~gy~l~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~ 83 (295) T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKE--NDPI 83 (295) T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCT--TCHH T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCC--CCHH T ss_conf 76989999906876665696899999999999998599899997899979999999999966998499972255--3156 Q ss_pred HHHHHHCCCCEEEECCH------HHCCCCCCHHHHHHHHHHH Q ss_conf 99874428977871813------3101157988999999986 Q T0580 68 KVDAERLGIQIVATRGM------EYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 68 k~~~~~~~ipv~~I~~~------~Y~~~~~dg~k~l~~i~~~ 103 (105) -+.+.+.|+|++.++.. .|.+.-.|...+...+.++ T Consensus 84 ~~~l~~~~iPvV~i~~~~~~~~~~~~~v~~d~~~~~~~~~~~ 125 (295) T 3hcw_A 84 KQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRH 125 (295) T ss_dssp HHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHH T ss_pred HHHHHHHHCCCEEEECCCCCCCCCEECCCCCCHHHHHHHHHH T ss_conf 788886401000253035667765302222348888888887 No 16 >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Probab=91.31 E-value=0.27 Score=27.54 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=43.5 Q ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC Q ss_conf 6899856-8630889999999999844982688873377898730678899988 Q T0580 5 KVLVLCA-GSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA 57 (105) Q Consensus 5 kIlL~C~-~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla 57 (105) ||+++.+ ...+|--+|..+.+.+.++|+++.+.........+..+++|+++++ T Consensus 2 kvlI~Y~S~tG~te~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~vi~~ 55 (147) T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLG 55 (147) T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEE T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCEEEEE T ss_conf 699999898518999999999998765980699860005655540246779999 No 17 >1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Probab=91.15 E-value=0.25 Score=27.75 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=41.4 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCC-CEEEEC Q ss_conf 2689985686308899999999998449826888733778987306788999884478889999998744289-778718 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGI-QIVATR 82 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~i-pv~~I~ 82 (105) |||+|..+||.-||..++-+++. .+.++..-.+..++- + -++++++.+.+.|. ++.++| T Consensus 1 mKVvLAySGGLDTSv~l~wL~e~---~~~eVi~~~~d~Gq~----~-------------d~~~i~~kA~~~GA~~~~v~D 60 (400) T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIGQG----E-------------EVEEAREKALRTGASKAIALD 60 (400) T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESSCS----S-------------CHHHHHHHHHHHTCSEEEEEE T ss_pred CEEEEEECCCCHHHHHHHHHHHC---CCCEEEEEEEECCCH----H-------------HHHHHHHHHHHHCCCEEEEEC T ss_conf 96999948981799999999741---698899999608977----7-------------779999999983997899976 Q ss_pred CHH Q ss_conf 133 Q T0580 83 GME 85 (105) Q Consensus 83 ~~~ 85 (105) -++ T Consensus 61 ~r~ 63 (400) T 1kor_A 61 LKE 63 (400) T ss_dssp CHH T ss_pred CHH T ss_conf 899 No 18 >1zgg_A Putative low molecular weight protein-tyrosine- phosphatase YWLE; alpha/beta, four-stranded parallel beta sheet, structural genomics; NMR {Bacillus subtilis} Probab=90.84 E-value=0.27 Score=27.61 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=49.5 Q ss_pred CEEEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEEEECHHHH----------------------------HHHCCCCCEE Q ss_conf 26899856863088999999-999984498268887337789----------------------------8730678899 Q T0580 4 LKVLVLCAGSGTSAQLANAI-NEGANLTEVRVIANSGAYGAH----------------------------YDIMGVYDLI 54 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km-~~~a~~~~~~~~i~A~~~~~~----------------------------~~~~~~~Dii 54 (105) ||||.+|.|-.--|-||..+ +..++++|.+++|.+++.+.. .+...++|+| T Consensus 1 M~ILfVC~gN~cRSpmAE~i~~~~~~~~g~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gi~~~h~~~~l~~~~~~~~DlI 80 (150) T 1zgg_A 1 MDIIFVCTGNTCRSPMAEALFKSIAEREGLNVNVRSAGVFASPNGKATPHAVEALFEKHIALNHVSSPLTEELMESADLV 80 (150) T ss_dssp CEEEEECTTSTTTHHHHHHHHHHHHHHHTCCCEEEEEBTTCCTTCBCCTTHHHHHHHTTSCCCCBCCBCCHHHHHHCSEE T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEE T ss_conf 96999869956799999999999999869943786453344656777638899988723220010013058763021320 Q ss_pred EECHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 9884478889999998744289778 Q T0580 55 ILAPQVRSYYREMKVDAERLGIQIV 79 (105) Q Consensus 55 LlaPQv~~~~~~ik~~~~~~~ipv~ 79 (105) |.-=+ ...+.+...+....-++. T Consensus 81 l~M~~--~~~~~l~~~~p~~~~ki~ 103 (150) T 1zgg_A 81 LAMTH--QHKQIIASQFGRYRDKVF 103 (150) T ss_dssp EESSH--HHHHHHHHHHTSCGGGEE T ss_pred HHCCH--HHHHHHHHHCCCCCCCEE T ss_conf 12249--899998765565535075 No 19 >2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Probab=90.54 E-value=0.46 Score=26.24 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHH-------HHHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH Q ss_conf 9999999999844982688873377-------898730-678899988447888999999874428977871813 Q T0580 18 QLANAINEGANLTEVRVIANSGAYG-------AHYDIM-GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM 84 (105) Q Consensus 18 ~la~km~~~a~~~~~~~~i~A~~~~-------~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~ 84 (105) -+.+-++++|++.|+++.+...+.. .++..+ .++|.|++.|--.-.....-+.+.+.|+|+++++.. T Consensus 17 ~~~~G~~~aa~~~g~~v~~~~~~~~d~~~q~~~i~~~i~~~~DgIii~~~~~~~~~~~l~~a~~~gipvv~~d~~ 91 (313) T 2h3h_A 17 QVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTD 91 (313) T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECC T ss_conf 999999999998099799997999999999999999997699999997762211259999999759986998245 No 20 >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Probab=90.52 E-value=0.18 Score=28.63 Aligned_cols=35 Identities=9% Similarity=0.198 Sum_probs=26.9 Q ss_pred HHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 730678899988447888999999874428977871 Q T0580 46 DIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVAT 81 (105) Q Consensus 46 ~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I 81 (105) +.+.++|+|.++|-+...-+.+++ +.+.|+|+..- T Consensus 74 ~~~~~~d~vv~Spgi~~~~p~~~~-a~~~~i~v~~~ 108 (491) T 2f00_A 74 ENVRDASVVVVSSAISADNPEIVA-AHEARIPVIRR 108 (491) T ss_dssp GGGTTCSEEEECTTCCTTCHHHHH-HHHTTCCEEEH T ss_pred HHCCCCCEEEECCCCCCCCHHHHH-HHHCCCCEEEH T ss_conf 896899899989970988899999-99889979859 No 21 >3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} Probab=90.44 E-value=0.48 Score=26.13 Aligned_cols=66 Identities=15% Similarity=-0.010 Sum_probs=45.3 Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHH-------HHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH Q ss_conf 9999999998449826888733778-------98730-678899988447888999999874428977871813 Q T0580 19 LANAINEGANLTEVRVIANSGAYGA-------HYDIM-GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM 84 (105) Q Consensus 19 la~km~~~a~~~~~~~~i~A~~~~~-------~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~ 84 (105) +.+-+++++++.|+++.+.+.+..+ ++..+ ..+|.|++.|.-.-.....-+.+.+.|+|++.++.. T Consensus 22 v~~G~~~~a~~~g~~l~~~~~~~~d~~~q~~~i~~li~~~~DgIIi~~~~~~~~~~~l~~~~~~gIpvV~~d~~ 95 (305) T 3g1w_A 22 CLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSG 95 (305) T ss_dssp HHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 99999999997299799997999999999999999997799999996787377899999999869929998167 No 22 >2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Probab=90.15 E-value=0.99 Score=24.28 Aligned_cols=73 Identities=12% Similarity=0.010 Sum_probs=45.7 Q ss_pred CCCEEEEEECC-CCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHH------HHHHHHHHHHHHHHC Q ss_conf 97268998568-63088999999999984498268887337789873067889998844------788899999987442 Q T0580 2 KELKVLVLCAG-SGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQ------VRSYYREMKVDAERL 74 (105) Q Consensus 2 k~~kIlL~C~~-G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQ------v~~~~~~ik~~~~~~ 74 (105) ..|||+++-.+ |.+-|+ + .+.++.|.+++|... ....+.+.++|.|+|.|= -....+.+.+.+.+. T Consensus 12 ~m~ki~iID~g~~~~~~i-~----~~L~~lG~~~~Iip~--~~~~~~l~~~d~IIl~GG~~~~~~~~~~~~~l~~~i~~~ 84 (212) T 2a9v_A 12 HMLKIYVVDNGGQWTHRE-W----RVLRELGVDTKIVPN--DIDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDH 84 (212) T ss_dssp CCCBEEEEEESCCTTCHH-H----HHHHHTTCBCCEEET--TSCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHC T ss_pred CCCEEEEEECCCCHHHHH-H----HHHHHCCCEEEEEEC--CCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHC T ss_conf 645799999976789999-9----999978984899969--799999846890798357655420332124567776515 Q ss_pred CCCEEEE Q ss_conf 8977871 Q T0580 75 GIQIVAT 81 (105) Q Consensus 75 ~ipv~~I 81 (105) ++|+.-| T Consensus 85 ~~PiLGI 91 (212) T 2a9v_A 85 NYPILGI 91 (212) T ss_dssp CSCEEEE T ss_pred CCEEEEE T ss_conf 8328998 No 23 >1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Probab=89.15 E-value=1 Score=24.13 Aligned_cols=93 Identities=8% Similarity=0.096 Sum_probs=57.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC------------------HHHHHHHCCCCCEEEECHHHHHH Q ss_conf 972689985686308899999999998449826888733------------------77898730678899988447888 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA------------------YGAHYDIMGVYDLIILAPQVRSY 63 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~------------------~~~~~~~~~~~DiiLlaPQv~~~ 63 (105) |+|||.++=.|.++....+..++. .-++++.++. +...++..++.|+|.++--...+ T Consensus 4 k~irigiIG~G~~~~~~~~~~l~~-----~~~~~~v~v~d~~~~~~~~~~~~~~i~~~~~~e~l~~~~D~V~Iatp~~~H 78 (319) T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAA-----ASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASH 78 (319) T ss_dssp -CEEEEEECCSTHHHHTHHHHHHS-----CSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHH T ss_pred CCCEEEEEECCHHHHHHHHHHHHH-----CCCCEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCC T ss_conf 788899995999999999999983-----899689999879999999999981998348199984044311234321000 Q ss_pred HHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 999999874428977871813310115798899999998 Q T0580 64 YREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 64 ~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) .+.+++.. +.|++|..=-|.....- +.+++++.+.+ T Consensus 79 ~~~~~~al-~~gk~V~~EKPl~~~~~--e~~~l~~~~~~ 114 (319) T 1tlt_A 79 FDVVSTLL-NAGVHVCVDKPLAENLR--DAERLVELAAR 114 (319) T ss_dssp HHHHHHHH-HTTCEEEEESSSCSSHH--HHHHHHHHHHH T ss_pred CCCCCCCC-CCCHHHHHCCCCCHHHH--HCCCCCCCCCC T ss_conf 12332233-32223330334200123--20232212224 No 24 >3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} Probab=88.83 E-value=0.95 Score=24.39 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=44.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEC----H----HHHHHHC--CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH Q ss_conf 899999999998449826888733----7----7898730--678899988447888999999874428977871813 Q T0580 17 AQLANAINEGANLTEVRVIANSGA----Y----GAHYDIM--GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM 84 (105) Q Consensus 17 s~la~km~~~a~~~~~~~~i~A~~----~----~~~~~~~--~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~ 84 (105) +-+.+-+++++++.|.++.+.... . ..+++.+ ..+|.|+++|--.-.....-+.+.+.|+|++.++.. T Consensus 16 ~~~~~G~~~~a~~~g~~~~~~~~~~~~d~~~q~~~l~~~i~~~~~D~iii~~~~~~~~~~~i~~~~~~gIPvv~~~~~ 93 (276) T 3ksm_A 16 RQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSD 93 (276) T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 999999999999839989999589987999999999999970899899993798577799999999779949973664 No 25 >1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A Probab=88.53 E-value=0.81 Score=24.79 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=33.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHH-HHHHHHCCC--CEEEEEECHH Q ss_conf 99726899856863088999999-999984498--2688873377 Q T0580 1 SKELKVLVLCAGSGTSAQLANAI-NEGANLTEV--RVIANSGAYG 42 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km-~~~a~~~~~--~~~i~A~~~~ 42 (105) |+++|||.+|.|-.--|-||..+ +..+.+++. .+.|.+++.. T Consensus 2 s~p~~ILFVCtgN~cRSpmAEal~~~~~~~~~~~~~~~v~SAGt~ 46 (163) T 1u2p_A 2 SDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTG 46 (163) T ss_dssp --CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESS T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 998879998188487999999999999986688870788437766 No 26 >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Probab=87.68 E-value=0.47 Score=26.16 Aligned_cols=72 Identities=7% Similarity=0.161 Sum_probs=41.3 Q ss_pred CEEEEE--ECCCCCH-H-HHHH-------------HHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHH Q ss_conf 268998--5686308-8-9999-------------999999844982688873377898730678899988447888999 Q T0580 4 LKVLVL--CAGSGTS-A-QLAN-------------AINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYRE 66 (105) Q Consensus 4 ~kIlL~--C~~G~ST-s-~la~-------------km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ 66 (105) -||.++ |+.|||. . +|.+ .+.+..++.|+++... ...+.+.+.|+|.++|-+...-+. T Consensus 19 k~i~~iGiggsG~salA~~l~~~G~~V~~~D~~~~~~~~~L~~~gi~~~~g-----~~~~~~~~~d~vV~Spgi~~~~p~ 93 (475) T 1p3d_A 19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIG-----HAEEHIEGASVVVVSSAIKDDNPE 93 (475) T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEES-----CCGGGGTTCSEEEECTTSCTTCHH T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEECC-----CCHHHCCCCCEEEECCCCCCCCHH T ss_conf 789999966999999999999788939999289997999999787999879-----998996999999989974998999 Q ss_pred HHHHHHHCCCCEEEE Q ss_conf 999874428977871 Q T0580 67 MKVDAERLGIQIVAT 81 (105) Q Consensus 67 ik~~~~~~~ipv~~I 81 (105) +++. .+.|+|+..- T Consensus 94 l~~a-~~~~i~i~~~ 107 (475) T 1p3d_A 94 LVTS-KQKRIPVIQR 107 (475) T ss_dssp HHHH-HHTTCCEEEH T ss_pred HHHH-HHCCCCEEEH T ss_conf 9999-9869969759 No 27 >1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Probab=86.74 E-value=0.75 Score=24.97 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=41.2 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCC-CCEEEECC Q ss_conf 68998568630889999999999844982688873377898730678899988447888999999874428-97787181 Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLG-IQIVATRG 83 (105) Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~-ipv~~I~~ 83 (105) ||+|..+||.-||..+.-+++ +|.++..-.+..++. | -++++++.+...| .++.++|- T Consensus 16 KVvLAySGGLDTSv~l~wL~e----~g~eVia~~~D~Gq~-------e----------d~~~i~~kA~~~GA~~~~v~D~ 74 (421) T 1vl2_A 16 KVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVGQK-------D----------DFVAIKEKALKTGASKVYVEDL 74 (421) T ss_dssp EEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESSCC-------C----------CHHHHHHHHHHHTCSEEEEEEC T ss_pred EEEEEECCCCHHHHHHHHHHH----CCCEEEEEEEECCCH-------H----------HHHHHHHHHHHHCCCEEEEECC T ss_conf 099992897089999999987----799799999979886-------7----------7899999999849968999776 Q ss_pred HH Q ss_conf 33 Q T0580 84 ME 85 (105) Q Consensus 84 ~~ 85 (105) ++ T Consensus 75 r~ 76 (421) T 1vl2_A 75 RR 76 (421) T ss_dssp HH T ss_pred HH T ss_conf 99 No 28 >1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A* Probab=86.62 E-value=1.4 Score=23.41 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=47.6 Q ss_pred CCCEEEEEECCCCCHHHHHHH-HHHHHHHCCCC---EEEEEECHHHH-----------------------------HHHC Q ss_conf 972689985686308899999-99999844982---68887337789-----------------------------8730 Q T0580 2 KELKVLVLCAGSGTSAQLANA-INEGANLTEVR---VIANSGAYGAH-----------------------------YDIM 48 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~k-m~~~a~~~~~~---~~i~A~~~~~~-----------------------------~~~~ 48 (105) ++++||.+|.|-.--|-||.. ++..+.+++++ ++|.+++.... .+.. T Consensus 6 ~k~~VLFVC~gN~cRSpmAEai~r~~~~~~~l~~~~~~v~SAG~~~~~~~~~~~~~a~~vl~~~Gi~~~h~sr~l~~~~~ 85 (161) T 1d1q_A 6 PKISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKTKHF 85 (161) T ss_dssp CCEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCCCCHHHHHHHHHTTCCCCCCBCBCCGGGG T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH T ss_conf 98769998698384999999999999987699766478853434667789998999999999849998870000777575 Q ss_pred CCCCEEEECHHHHHHHHHHHHHH Q ss_conf 67889998844788899999987 Q T0580 49 GVYDLIILAPQVRSYYREMKVDA 71 (105) Q Consensus 49 ~~~DiiLlaPQv~~~~~~ik~~~ 71 (105) .++|+||.-= +...+.+...+ T Consensus 86 ~~~DlIl~M~--~~~~~~l~~~~ 106 (161) T 1d1q_A 86 DEYDYIIGMD--ESNINNLKKIQ 106 (161) T ss_dssp GTCSEEEESS--HHHHHHHHHHC T ss_pred HHCCEEEECC--HHHHHHHHHHC T ss_conf 2389999888--89999999856 No 29 >2cwd_A Low molecular weight phosphotyrosine protein phosphatase; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus HB8} Probab=84.77 E-value=1.9 Score=22.59 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=33.5 Q ss_pred CCCCEEEEEECCCCCHHHHHHHH-HHHHHHCCC--CEEEEEECH Q ss_conf 99726899856863088999999-999984498--268887337 Q T0580 1 SKELKVLVLCAGSGTSAQLANAI-NEGANLTEV--RVIANSGAY 41 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km-~~~a~~~~~--~~~i~A~~~ 41 (105) ++++|||.+|.+-.--|-||..+ ++.+.++++ .+.+.+++. T Consensus 2 ~~p~kVLFVCtgN~cRS~mAE~l~~~~~~~~~~~~~~~v~SaG~ 45 (161) T 2cwd_A 2 DRPVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGT 45 (161) T ss_dssp CCCEEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEES T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC T ss_conf 99887999849848799999999999888568775246850320 No 30 >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Probab=84.35 E-value=1.2 Score=23.72 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=48.4 Q ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECHH------------------HHHHHCCCCCEEEEC-------- Q ss_conf 6899856-8630889999999999844982688873377------------------898730678899988-------- Q T0580 5 KVLVLCA-GSGTSAQLANAINEGANLTEVRVIANSGAYG------------------AHYDIMGVYDLIILA-------- 57 (105) Q Consensus 5 kIlL~C~-~G~STs~la~km~~~a~~~~~~~~i~A~~~~------------------~~~~~~~~~DiiLla-------- 57 (105) |||++.. ...+|..||+.+.+.+++.|.++++.-.... ...+.+.+||.|++| T Consensus 7 KilIvy~S~~GnT~~lA~~i~~g~~~~g~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ii~GsP~~~~~~ 86 (200) T 2a5l_A 7 YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNM 86 (200) T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBC T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECCHHHHCC T ss_conf 28999948981899999999998854497689874366216889986403201352234111644888899556054033 Q ss_pred -HHHHHHHHHHHHH Q ss_conf -4478889999998 Q T0580 58 -PQVRSYYREMKVD 70 (105) Q Consensus 58 -PQv~~~~~~ik~~ 70 (105) +|++..+++.... T Consensus 87 ~~~~k~f~dr~~~~ 100 (200) T 2a5l_A 87 ASPLKYFLDGTSSL 100 (200) T ss_dssp CHHHHHHHHTCHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 09999999874037 No 31 >2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, structural genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Probab=83.98 E-value=1.1 Score=24.07 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=39.3 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCC-CEEE Q ss_conf 972689985686308899999999998449826888733778987306788999884478889999998744289-7787 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGI-QIVA 80 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~i-pv~~ 80 (105) .+=||+|..+||.-||..+.-+++ +|.++..-.+..++- + | ++.+++.+.+.|. ++.+ T Consensus 4 ~k~kVvLAySGGLDTS~~l~wL~e----~g~eVia~~~D~Gq~----~--d-----------~~~i~~kA~~~GA~~~~v 62 (413) T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKE----QGYDVIAYLANIGQK----E--D-----------FEEARKKALKLGAKKVFI 62 (413) T ss_dssp -CEEEEEECCSSHHHHHHHHHHHH----TTEEEEEEEEESSCC----C--C-----------HHHHHHHHHHHTCSEEEE T ss_pred CCCEEEEEECCCCHHHHHHHHHHH----CCCEEEEEEEECCCH----H--H-----------HHHHHHHHHHHCCCEEEE T ss_conf 888699990898279999999987----698699999979987----8--8-----------899999999839988999 Q ss_pred ECCH Q ss_conf 1813 Q T0580 81 TRGM 84 (105) Q Consensus 81 I~~~ 84 (105) +|-+ T Consensus 63 ~D~r 66 (413) T 2nz2_A 63 EDVS 66 (413) T ss_dssp EECH T ss_pred EECH T ss_conf 7069 No 32 >2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Probab=83.90 E-value=2.4 Score=22.03 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=49.8 Q ss_pred CEEEEEECCCCCHHH---HHHHHHHHHHHC-CCCEEEEEECH------HHHHHHC-CCCCEEEECHHHHHHHHHHHHHHH Q ss_conf 268998568630889---999999999844-98268887337------7898730-678899988447888999999874 Q T0580 4 LKVLVLCAGSGTSAQ---LANAINEGANLT-EVRVIANSGAY------GAHYDIM-GVYDLIILAPQVRSYYREMKVDAE 72 (105) Q Consensus 4 ~kIlL~C~~G~STs~---la~km~~~a~~~-~~~~~i~A~~~------~~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~ 72 (105) .||-+ +-...+..+ +.+.+++.++++ +..+.+.-... ..++..+ ..+|.|++.|--......+-+.+. T Consensus 3 ~kIgv-~~~~~~~~f~~~~~~gi~~~a~~~~g~~l~~~~~~~d~~~q~~~le~li~~~~D~iiv~~~d~~~~~~~l~~a~ 81 (309) T 2fvy_A 3 TRIGV-TIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 81 (309) T ss_dssp EEEEE-EESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHH T ss_pred CEEEE-EECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH T ss_conf 88999-97999799999999999999987699189997399999999999999997699999976876030399999999 Q ss_pred HCCCCEEEECCH Q ss_conf 428977871813 Q T0580 73 RLGIQIVATRGM 84 (105) Q Consensus 73 ~~~ipv~~I~~~ 84 (105) +.|+|++.++.. T Consensus 82 ~~gIpvV~~d~~ 93 (309) T 2fvy_A 82 GQNVPVVFFNKE 93 (309) T ss_dssp TTTCCEEEESSC T ss_pred HCCCCEEEECCC T ss_conf 869929996687 No 33 >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Probab=83.71 E-value=1.3 Score=23.56 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=40.1 Q ss_pred EEEEEE-CCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC Q ss_conf 689985-68630889999999999844982688873377898730678899988 Q T0580 5 KVLVLC-AGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA 57 (105) Q Consensus 5 kIlL~C-~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla 57 (105) ||+|+= +...+|.-+|+.+.+.++..|.++++...+.....+..+.+|.++++ T Consensus 3 ki~I~y~S~tGnte~~A~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~ii~~ 56 (148) T 3f6r_A 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFG 56 (148) T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEE T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEEEE T ss_conf 399999998607999999999999866995224650108988973047879997 No 34 >3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Probab=83.61 E-value=2.5 Score=21.96 Aligned_cols=69 Identities=10% Similarity=0.125 Sum_probs=48.3 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHH-------HHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH Q ss_conf 8899999999998449826888733778-------98730-678899988447888999999874428977871813 Q T0580 16 SAQLANAINEGANLTEVRVIANSGAYGA-------HYDIM-GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM 84 (105) Q Consensus 16 Ts~la~km~~~a~~~~~~~~i~A~~~~~-------~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~ 84 (105) -+-+.+-++++|++.|.++.+.+.+..+ ++..+ .++|.|++.|.-.-.....-+.+.+.|+|+.+++.. T Consensus 19 ~~~~~~Gi~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~DgIIi~~~~~~~~~~~~~~~~~~gipvv~~~~~ 95 (303) T 3d02_A 19 FNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESP 95 (303) T ss_dssp HHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCT T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEECCCC T ss_conf 99999999999997499899997899999999999999997599989994258411048999999769958844788 No 35 >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Probab=82.26 E-value=2.8 Score=21.65 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=56.5 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC---------HHH--HHHHHHHHHHHH Q ss_conf 268998568630889999999999844982688873377898730678899988---------447--888999999874 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA---------PQV--RSYYREMKVDAE 72 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla---------PQv--~~~~~~ik~~~~ 72 (105) |+|+---..| +|--+|+.+.+.+.+.|.++.+.-.+.....+ +.++|.++++ |+. +...+.+. .. T Consensus 1 i~IvY~S~tG-nT~~vA~~ia~~l~~~g~~v~~~~~~~~~~~~-l~~~d~ii~g~pt~~~g~~p~~~~~~~~~~~~--~~ 76 (138) T 5nul_A 1 MKIVYWSGTG-NTEKMAELIAKGIIESGKDVNTINVSDVNIDE-LLNEDILILGCSAMTDEVLEESEFEPFIEEIS--TK 76 (138) T ss_dssp CEEEEECSSS-HHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHH-HTTCSEEEEEECCBTTTBCCTTTHHHHHHHHG--GG T ss_pred CEEEEECCCH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH--HH T ss_conf 9999999881-79999999999987559815899830256102-21488799998065688798699999999841--20 Q ss_pred HCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 428977871813310115798899999998 Q T0580 73 RLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 73 ~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) ..|.++.+.- -|++. +|+ +++.+.+ T Consensus 77 ~~~k~~~~fg--s~g~~--~~~-~~~~l~~ 101 (138) T 5nul_A 77 ISGKKVALFG--SYGWG--DGK-WMRDFEE 101 (138) T ss_dssp CTTCEEEEEE--EESSS--CSH-HHHHHHH T ss_pred CCCCCEEEEE--EECCC--CCH-HHHHHHH T ss_conf 0598389999--95789--869-9999999 No 36 >2ark_A Flavodoxin; FMN, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Probab=81.75 E-value=2.9 Score=21.54 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=59.6 Q ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHH-CCCCEEEEEECHHHHHHHCCCCCEEEEC---------HHHHHHHHHHHHHH Q ss_conf 72689985686-3088999999999984-4982688873377898730678899988---------44788899999987 Q T0580 3 ELKVLVLCAGS-GTSAQLANAINEGANL-TEVRVIANSGAYGAHYDIMGVYDLIILA---------PQVRSYYREMKVDA 71 (105) Q Consensus 3 ~~kIlL~C~~G-~STs~la~km~~~a~~-~~~~~~i~A~~~~~~~~~~~~~DiiLla---------PQv~~~~~~ik~~~ 71 (105) .-||+++..+. .+|-.|++.+.+.+.+ .|.++.+...+....++ +.++|.|++| |+++..++++.... T Consensus 4 M~kilIvy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~~~~~d-l~~~d~ii~GsPty~g~~~~~~~~fld~~~~~~ 82 (188) T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKED-VLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDL 82 (188) T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHH-HHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGT T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH-HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHH T ss_conf 8879999989983899999999984323459669993133347778-971871687357234544799999999877887 Q ss_pred -HH-CCCCEEEECCHHHCCCCCCHHHHHHHHHHH Q ss_conf -44-289778718133101157988999999986 Q T0580 72 -ER-LGIQIVATRGMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 72 -~~-~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~~ 103 (105) .+ .|.+..+.-.- ++.--+.+..+..+.+. T Consensus 83 ~~~l~gK~~a~F~s~--g~~~gG~e~al~~l~~~ 114 (188) T 2ark_A 83 WGEIDGKIACAFSSS--GGWGGGNEVACMSILTM 114 (188) T ss_dssp TTSCTTCEEEEEEEE--SSBTSSHHHHHHHHHHH T ss_pred HHHHCCEEEEEEECC--CCCCCCHHHHHHHHHHH T ss_conf 665489799999757--77788679999887677 No 37 >1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} SCOP: c.93.1.1 PDB: 1tm2_A 3ejw_A* Probab=81.53 E-value=3 Score=21.49 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=52.3 Q ss_pred CCEEEEEECCCCCH---HHHHHHHHHHHHHCCCCEEEEEECH-------HHHHHHC-CCCCEEEECHHHHHHHHHHHHHH Q ss_conf 72689985686308---8999999999984498268887337-------7898730-67889998844788899999987 Q T0580 3 ELKVLVLCAGSGTS---AQLANAINEGANLTEVRVIANSGAY-------GAHYDIM-GVYDLIILAPQVRSYYREMKVDA 71 (105) Q Consensus 3 ~~kIlL~C~~G~ST---s~la~km~~~a~~~~~~~~i~A~~~-------~~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~ 71 (105) .-||-++... ++. +-+.+-+++++++.|.++.+.+.+. ..++..+ .++|.|++.|.-.......-..+ T Consensus 3 ~~~Ia~i~~~-~~npf~~~~~~g~~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~~i~~~~d~Iii~~~d~~~~~~~~~~a 81 (316) T 1tjy_A 3 AERIAFIPKL-VGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316) T ss_dssp CCEEEEECSS-SSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH T ss_pred CCEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH T ss_conf 7889999499-999999999999999999819989999799999999999999999739974420133320245688876 Q ss_pred HHCCCCEEEECCH Q ss_conf 4428977871813 Q T0580 72 ERLGIQIVATRGM 84 (105) Q Consensus 72 ~~~~ipv~~I~~~ 84 (105) .+.++|+..++.. T Consensus 82 ~~~gipvv~~d~~ 94 (316) T 1tjy_A 82 MQRGVKILTWDSD 94 (316) T ss_dssp HHTTCEEEEESSC T ss_pred HHCCCCEEECCCC T ss_conf 5058520103543 No 38 >2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni} Probab=81.47 E-value=3 Score=21.48 Aligned_cols=94 Identities=12% Similarity=0.183 Sum_probs=57.6 Q ss_pred CEEEEEECCCCCHHHHHHHH-HHHHHHCCC--CEEEEEECHHHH------------------------------HHHCCC Q ss_conf 26899856863088999999-999984498--268887337789------------------------------873067 Q T0580 4 LKVLVLCAGSGTSAQLANAI-NEGANLTEV--RVIANSGAYGAH------------------------------YDIMGV 50 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km-~~~a~~~~~--~~~i~A~~~~~~------------------------------~~~~~~ 50 (105) .|||.+|.|-.-=|-||..+ +..+.++++ .+.|.+++.... .+..++ T Consensus 2 kkILfVC~gNicRSpmAE~i~r~~~~~~~l~~~~~v~SAG~~~~~~G~~~~~~a~~~l~~~gi~~~~h~sr~l~~~~~~~ 81 (156) T 2gi4_A 2 KKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSGEHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDE 81 (156) T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHHHHHTTTTTCEEEEEBSSCSSTTCCCCHHHHHHHHHTSCSCCCCCCCBCCHHHHTT T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCC T ss_conf 87999979748899999999999998679986457855754455578868999999999818763222045556640453 Q ss_pred CCEEEECHHHHHHHHHHHHHHHHCCCCEE------------EECCHHHCCCCCCHHHHHHHHHH Q ss_conf 88999884478889999998744289778------------71813310115798899999998 Q T0580 51 YDLIILAPQVRSYYREMKVDAERLGIQIV------------ATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 51 ~DiiLlaPQv~~~~~~ik~~~~~~~ipv~------------~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) +|+||.-=+ ..+..+.+.+.....++. -|| +.|..+ +-+.+.+++.+ T Consensus 82 ~DlIl~Md~--~~~~~l~~~~p~~~~ki~~l~~f~~~~~~~~I~-DPy~~~--~f~~v~~~i~~ 140 (156) T 2gi4_A 82 SDFLITMDN--SNFKNVLKNFTNTQNKVLKITDFSPSLNYDEVP-DPWYSG--NFDETYKILSL 140 (156) T ss_dssp CSEEECCCH--HHHHHHHHHSCGGGGGEECTTTTCSSCCCCSSC-HHHHTS--CSHHHHHHHHH T ss_pred CCEEEEECC--HHHHHHHHHCCCCHHHEEEHHHHCCCCCCCCCC-CCCCCC--HHHHHHHHHHH T ss_conf 899999636--599999876677332464084346556889897-999998--09999999999 No 39 >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Probab=81.27 E-value=3 Score=21.44 Aligned_cols=81 Identities=11% Similarity=-0.003 Sum_probs=52.2 Q ss_pred CEEEEEECCCCC--HHHHHHHHHHHHHHCCCCEEEEEECHH------HHHHHC-CCCCEEEECHHHHHHHHHHHHHHHHC Q ss_conf 268998568630--889999999999844982688873377------898730-67889998844788899999987442 Q T0580 4 LKVLVLCAGSGT--SAQLANAINEGANLTEVRVIANSGAYG------AHYDIM-GVYDLIILAPQVRSYYREMKVDAERL 74 (105) Q Consensus 4 ~kIlL~C~~G~S--Ts~la~km~~~a~~~~~~~~i~A~~~~------~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~ 74 (105) .+|-++..+.-+ .+-+.+-+++++++.|.++.+...... .++..+ ..+|.|++.|--.-....+-+.+.+. T Consensus 6 k~Igvi~~~~~~~f~~~~~~g~~~~a~~~G~~~~~~~~~~d~~~q~~~i~~~i~~~~dgiii~~~~~~~~~~~i~~~~~~ 85 (291) T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDA 85 (291) T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHT T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC T ss_conf 99999958999989999999999999973999999938999999999999999759999999278403058999999986 Q ss_pred CCCEEEECCH Q ss_conf 8977871813 Q T0580 75 GIQIVATRGM 84 (105) Q Consensus 75 ~ipv~~I~~~ 84 (105) |+|+..++.. T Consensus 86 gipvv~~~~~ 95 (291) T 3l49_A 86 GIPLFTVDTA 95 (291) T ss_dssp TCCEEEESCC T ss_pred CCCEEECCCC T ss_conf 9919966776 No 40 >3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infectious disease, parasitic protozoan; 1.80A {Entamoeba histolytica hm-1} PDB: 3js5_A* 3ily_A 3ido_A* Probab=80.35 E-value=1.6 Score=23.04 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=32.5 Q ss_pred CCCCEEEEEECCCCCHHHHHHH-HHHHHHHCCC--CEEEEEECH Q ss_conf 9972689985686308899999-9999984498--268887337 Q T0580 1 SKELKVLVLCAGSGTSAQLANA-INEGANLTEV--RVIANSGAY 41 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~k-m~~~a~~~~~--~~~i~A~~~ 41 (105) +-+||||.+|.+-..-|-||.. ++..++++|+ .+.+.+++. T Consensus 2 ~~~~kILFVCtgN~cRSpmAEal~~~~~~~~~~~~~~~v~Sag~ 45 (161) T 3jvi_A 2 PGSMKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGT 45 (161) T ss_dssp --CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEES T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC T ss_conf 99769999879848699999999999998679998669994122 No 41 >3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} Probab=79.94 E-value=0.67 Score=25.28 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=55.0 Q ss_pred CCCEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC---------HHHHHHHHHHHHHH Q ss_conf 972689985686-30889999999999844982688873377898730678899988---------44788899999987 Q T0580 2 KELKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA---------PQVRSYYREMKVDA 71 (105) Q Consensus 2 k~~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla---------PQv~~~~~~ik~~~ 71 (105) ...|||++..+- .+|.-||+.+.+.+...+..+...........+.+.+||.|++| |+++..++.+.... T Consensus 5 ~~~~~lIvY~S~~G~T~~~A~~ia~g~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~GsP~~~g~~~~~~~~fld~~~~~~ 84 (193) T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSEDGWAALDAADAIIFGTPTYMGGPSWQFKKFADASSKPW 84 (193) T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCTTSCCCHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHH T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHH T ss_conf 89998999989974999999999998631043763025631213888985898999444347885699999999856565 Q ss_pred HH---CCCCEEEEC Q ss_conf 44---289778718 Q T0580 72 ER---LGIQIVATR 82 (105) Q Consensus 72 ~~---~~ipv~~I~ 82 (105) .. .|+|..+.- T Consensus 85 ~~~~l~gK~~~~f~ 98 (193) T 3d7n_A 85 FSAKWQDKVFGGFT 98 (193) T ss_dssp HTTTTTTCEEEEEE T ss_pred HCCCCCCCEEEEEE T ss_conf 24876898899999 No 42 >3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli K12} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* Probab=78.42 E-value=3.4 Score=21.15 Aligned_cols=78 Identities=26% Similarity=0.241 Sum_probs=50.5 Q ss_pred CEEEEEECC-CCCHHHHHHHHHHHHHH-CCCCEEEEEECH------------------HHHHHHCCCCCEEEEC------ Q ss_conf 268998568-63088999999999984-498268887337------------------7898730678899988------ Q T0580 4 LKVLVLCAG-SGTSAQLANAINEGANL-TEVRVIANSGAY------------------GAHYDIMGVYDLIILA------ 57 (105) Q Consensus 4 ~kIlL~C~~-G~STs~la~km~~~a~~-~~~~~~i~A~~~------------------~~~~~~~~~~DiiLla------ 57 (105) -|||++..+ ..+|..|++.+-+.+.+ .+.++++.-... ....+.+.++|+|++| T Consensus 2 ~Kilivy~S~~GnT~~la~aia~ga~~~~g~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~iilgsP~y~~ 81 (198) T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFG 81 (198) T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEETT T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCC T ss_conf 96899998988289999999997455448957999844334708888763155565023048899868989995453267 Q ss_pred ---HHHHHHHHHHHHHH---HHCCCCEEEE Q ss_conf ---44788899999987---4428977871 Q T0580 58 ---PQVRSYYREMKVDA---ERLGIQIVAT 81 (105) Q Consensus 58 ---PQv~~~~~~ik~~~---~~~~ipv~~I 81 (105) +|++...+.+.... .-.|.|+... T Consensus 82 ~~~~~lK~fiDr~~~~~~~~~~~gk~~~~f 111 (198) T 3b6i_A 82 NMSGQMRTFLDQTGGLWASGALYGKLASVF 111 (198) T ss_dssp EECHHHHHHHTTCHHHHHHTTTTTCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 740999999999888763252379989999 No 43 >2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* Probab=78.28 E-value=3.8 Score=20.87 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=46.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHH------HHHH-CCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH Q ss_conf 899999999998449826888733778------9873-0678899988447888999999874428977871813 Q T0580 17 AQLANAINEGANLTEVRVIANSGAYGA------HYDI-MGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM 84 (105) Q Consensus 17 s~la~km~~~a~~~~~~~~i~A~~~~~------~~~~-~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~ 84 (105) +-+.+.+++++++.|..+.+....... ++.. -..+|.|++.|--.......-+.+.+.|+|++.++.. T Consensus 18 ~~~~~gi~~~a~~~g~~l~~~~~~~d~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~gipvv~~~~~ 92 (290) T 2fn9_A 18 VVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRG 92 (290) T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSC T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCC T ss_conf 999999999999859989999589998999999999997499968853035410289999999769919997688 No 44 >1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Probab=78.25 E-value=2.8 Score=21.65 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=25.5 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH Q ss_conf 72689985686308899999999998449826888733778 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA 43 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~ 43 (105) .=||+|+.+||+-||..+.-+++ ++.++....+..++ T Consensus 10 gkKVvLAySGGLDTSv~l~wL~e----~g~eVia~~aD~Gq 46 (455) T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQ----KGAVPYAYTANLGQ 46 (455) T ss_dssp TSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCC T ss_pred CCEEEEEECCCCHHHHHHHHHHH----CCCEEEEEEEECCC T ss_conf 98899995898189999999987----49869999997999 No 45 >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Probab=77.41 E-value=2.9 Score=21.51 Aligned_cols=72 Identities=18% Similarity=0.077 Sum_probs=41.3 Q ss_pred CCCEEEEEECC--CCCHHHHHHHHHHHHHHCCCCEEEEEEC---H-HHH------------HHHCCCCCEEEECHHHHHH Q ss_conf 97268998568--6308899999999998449826888733---7-789------------8730678899988447888 Q T0580 2 KELKVLVLCAG--SGTSAQLANAINEGANLTEVRVIANSGA---Y-GAH------------YDIMGVYDLIILAPQVRSY 63 (105) Q Consensus 2 k~~kIlL~C~~--G~STs~la~km~~~a~~~~~~~~i~A~~---~-~~~------------~~~~~~~DiiLlaPQv~~~ 63 (105) -+|||.++=-| |||+ +| +.+.++|.++...=.. . ..+ .+.+.+.|+|.++|-++.. T Consensus 11 ~~m~ih~iGigg~Gms~--lA----~~L~~~G~~V~gsD~~~~~~~~~L~~~Gi~~~~g~~~~~~~~~d~vV~SpgI~~~ 84 (469) T 1j6u_A 11 HHMKIHFVGIGGIGMSA--VA----LHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDD 84 (469) T ss_dssp -CCEEEEETTTSHHHHH--HH----HHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTT T ss_pred CCCEEEEEEECHHHHHH--HH----HHHHHCCCEEEEEECCCCHHHHHHHHCCCEEECCCCHHHCCCCCEEEECCCCCCC T ss_conf 87779999886999999--99----9999689959998299998999999888989879897887999899988946888 Q ss_pred HHHHHHHHHHCCCCEEE Q ss_conf 99999987442897787 Q T0580 64 YREMKVDAERLGIQIVA 80 (105) Q Consensus 64 ~~~ik~~~~~~~ipv~~ 80 (105) -+.+++. .+.|+||.. T Consensus 85 ~p~l~~a-~~~gi~v~~ 100 (469) T 1j6u_A 85 NPEIVRA-RMERVPIEN 100 (469) T ss_dssp CHHHHHH-HHTTCCEEE T ss_pred CHHHHHH-HHCCCCEEE T ss_conf 8999999-985997863 No 46 >1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 Probab=76.76 E-value=1 Score=24.17 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=41.9 Q ss_pred CCCCEEEEEECC---CCCHHHHHHHHHHHHHHCCCCEEEEE---E---------------CHHHHHHHCCCCCEEEEC-- Q ss_conf 997268998568---63088999999999984498268887---3---------------377898730678899988-- Q T0580 1 SKELKVLVLCAG---SGTSAQLANAINEGANLTEVRVIANS---G---------------AYGAHYDIMGVYDLIILA-- 57 (105) Q Consensus 1 ~k~~kIlL~C~~---G~STs~la~km~~~a~~~~~~~~i~A---~---------------~~~~~~~~~~~~DiiLla-- 57 (105) |..||||++=++ +-.|..|+++..+-++.+.+++.-.. + ...++.+.+.+.|.+.++ T Consensus 1 ~~~MKil~i~gSpr~~g~t~~l~~~~~~g~e~~~i~l~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~i~~AD~iV~~sP 80 (184) T 1rli_A 1 SNAMKIAVINGGTRSGGNTDVLAEKAVQGFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATP 80 (184) T ss_dssp ----CEEEEESSCSSCCHHHHHHHHHHTTTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEE T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEEEE T ss_conf 99888999988899787899999999747887899802057540002444303777640789999999996897999875 Q ss_pred -------HHHHHHHHHHH Q ss_conf -------44788899999 Q T0580 58 -------PQVRSYYREMK 68 (105) Q Consensus 58 -------PQv~~~~~~ik 68 (105) ++++...+.+- T Consensus 81 ~y~~~~~a~lK~~iDr~~ 98 (184) T 1rli_A 81 IYWFGMSGTLKLFIDRWS 98 (184) T ss_dssp CBTTBCCHHHHHHHHTHH T ss_pred EECCCCCHHHHHHHHHHH T ss_conf 206677599999999866 No 47 >2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A* Probab=76.02 E-value=4.4 Score=20.49 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=45.8 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH---------------HHHCCCCEEEEEECHHHHHHHCCCCCEEEEC-HHHHHHH Q ss_conf 99726899856863088999999999---------------9844982688873377898730678899988-4478889 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEG---------------ANLTEVRVIANSGAYGAHYDIMGVYDLIILA-PQVRSYY 64 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~---------------a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla-PQv~~~~ 64 (105) .++|||+++=+ |.--+..+..+.+. +.+..-...+++....++.+.+.+.|+|+.+ |.. + - T Consensus 14 ~~~MkI~viG~-G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~dvVi~~~p~~-~-~ 90 (365) T 2z2v_A 14 GRHMKVLILGA-GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF-L-G 90 (365) T ss_dssp --CCEEEEECC-SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSCEEECCCHH-H-H T ss_pred CCCCEEEEECC-CHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCEEEECCCCH-H-H T ss_conf 87267999998-6899999999865798699985788999877326735861599999999973489999926842-4-5 Q ss_pred HHHHHHHHHCCCCEEEEC Q ss_conf 999998744289778718 Q T0580 65 REMKVDAERLGIQIVATR 82 (105) Q Consensus 65 ~~ik~~~~~~~ipv~~I~ 82 (105) ..+-+.|-+.|+++..+. T Consensus 91 ~~i~~~~~~~g~~~vd~s 108 (365) T 2z2v_A 91 FKSIKAAIKSKVDMVDVS 108 (365) T ss_dssp HHHHHHHHHTTCCEEECC T ss_pred HHHHHHHHHCCCCCCCCC T ss_conf 677777774185403333 No 48 >1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4 Probab=75.49 E-value=4.6 Score=20.41 Aligned_cols=89 Identities=10% Similarity=0.109 Sum_probs=53.2 Q ss_pred CEEEEEECCC---CCHHHHHHHHHHHHHHC------CCCEEEEEE----------------------------CHHHHHH Q ss_conf 2689985686---30889999999999844------982688873----------------------------3778987 Q T0580 4 LKVLVLCAGS---GTSAQLANAINEGANLT------EVRVIANSG----------------------------AYGAHYD 46 (105) Q Consensus 4 ~kIlL~C~~G---~STs~la~km~~~a~~~------~~~~~i~A~----------------------------~~~~~~~ 46 (105) |||++++++= -.|..+++.+.+.+++. |.++++.-- ....+.+ T Consensus 1 MKIlvi~GS~R~~s~s~~la~~~~~~l~~~~~~~~~g~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191) T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191) T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHH T ss_conf 98999978899887259999999999998664068985799995544677655623211655455333458699999999 Q ss_pred HCCCCCEEEEC---------HHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHH Q ss_conf 30678899988---------447888999999874428977871813310115798899999 Q T0580 47 IMGVYDLIILA---------PQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQF 99 (105) Q Consensus 47 ~~~~~DiiLla---------PQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~ 99 (105) .+.+.|.++++ ++++..++.+-... .|+|+..+-. ++ .+|..+++. T Consensus 81 ~i~~AD~iv~~tP~Yn~~~p~~lKn~iD~~~~~~--~gK~v~~v~~---g~--~gg~~a~~~ 135 (191) T 1t0i_A 81 IVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEW--HGKPALVVSY---GG--HGGSKCNDQ 135 (191) T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTT--TTCEEEEEEE---ET--TTTHHHHHH T ss_pred HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH--CCCEEEEEEE---CC--CCHHHHHHH T ss_conf 9983887489975003788689999999728987--8987999986---78--427999999 No 49 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Probab=74.10 E-value=4.9 Score=20.20 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=61.1 Q ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHCCCCCEEEEC---------HHHHHHHHHHHH Q ss_conf 72689985686-3088999999999984498268887337---7898730678899988---------447888999999 Q T0580 3 ELKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAY---GAHYDIMGVYDLIILA---------PQVRSYYREMKV 69 (105) Q Consensus 3 ~~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~---~~~~~~~~~~DiiLla---------PQv~~~~~~ik~ 69 (105) +-++++++.+. ..|-.+|..+.+.+.+.|+++.+.-.+. .+..+.+.++|.+++| |+++..++.++. T Consensus 251 ~~~~~i~y~S~~G~t~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gspt~~~~~~~~~~~~~~~~~~ 330 (398) T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVG 330 (398) T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHH T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 45302689605780999999999987645955999987556815544303206768994587788606999999999862 Q ss_pred HHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHH Q ss_conf 8744289778718133101157988999999986 Q T0580 70 DAERLGIQIVATRGMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 70 ~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~~ 103 (105) .. -.|.++.+.-. |+| ++ ++++.+.+. T Consensus 331 ~~-~~~k~~~~f~s--~g~---~~-~ai~~~~~~ 357 (398) T 1ycg_A 331 LR-PKNKVGLAFGA--YGW---GG-GAQKILEER 357 (398) T ss_dssp HC-CSSCEEEEEEE--ESS---SC-CHHHHHHHH T ss_pred CC-CCCCEEEEEEE--ECC---CC-HHHHHHHHH T ss_conf 15-47998999995--377---86-799999999 No 50 >1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* Probab=73.31 E-value=5.2 Score=20.08 Aligned_cols=68 Identities=21% Similarity=0.149 Sum_probs=45.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEC-HH-------HHHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH Q ss_conf 899999999998449826888733-77-------898730-678899988447888999999874428977871813 Q T0580 17 AQLANAINEGANLTEVRVIANSGA-YG-------AHYDIM-GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM 84 (105) Q Consensus 17 s~la~km~~~a~~~~~~~~i~A~~-~~-------~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~ 84 (105) +-+.+.+++++++.|..+.+.... .. .++..+ ...|.+++.|...-.....-......|+|++.++.. T Consensus 17 ~~i~~gi~~~a~~~g~~l~i~~~~~~~d~~~q~~~l~~~~~~~vdgii~~~~~~~~~~~~~~~~~~~gipvV~~d~~ 93 (288) T 1gud_A 17 VDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK 93 (288) T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSC T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCC T ss_conf 99999999999974998999967898999999999999997599857642543321148999999719917623777 No 51 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} Probab=73.28 E-value=3 Score=21.48 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=42.3 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-CHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 97268998568630889999999999844982688873-37789873067889998844788899999987442897787 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG-AYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVA 80 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~-~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~ 80 (105) ++||||+++. .+. ...+..++.+.++..... +..++.+.+.++|++++.++...-.+-+ ..+. +.+... T Consensus 2 ~kmKILi~~~--~~~-----~~~~~L~~~~~ev~~~~~~~~e~l~~~i~d~d~li~~~~~~i~~~ll-~~~~--~LK~I~ 71 (307) T 1wwk_A 2 KRMKVLVAAP--LHE-----KAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVI-ESAP--KLKVIA 71 (307) T ss_dssp --CEEEECSC--CCH-----HHHHHHHHTTCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHH-TTCT--TCCEEE T ss_pred CCCEEEEECC--CCH-----HHHHHHHHCCCEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCHHHH-HHCC--CCCEEE T ss_conf 9878999789--999-----99999986799899789999999999848980999959988899999-5088--774896 Q ss_pred ECCHHH Q ss_conf 181331 Q T0580 81 TRGMEY 86 (105) Q Consensus 81 I~~~~Y 86 (105) ....-+ T Consensus 72 ~~~aG~ 77 (307) T 1wwk_A 72 RAGVGL 77 (307) T ss_dssp ESSSCC T ss_pred ECCCCC T ss_conf 503445 No 52 >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} Probab=72.66 E-value=2.8 Score=21.66 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=22.6 Q ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 7889998844788899999987442897787 Q T0580 50 VYDLIILAPQVRSYYREMKVDAERLGIQIVA 80 (105) Q Consensus 50 ~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~ 80 (105) +.|++..+|.+...-+.+++ +.+.++|+.. T Consensus 66 ~~~~vv~s~~i~~~~~~~~~-a~~~~i~i~~ 95 (326) T 3eag_A 66 KADVYVIGNVAKRGMDVVEA-ILNLGLPYIS 95 (326) T ss_dssp CCSEEEECTTCCTTCHHHHH-HHHTTCCEEE T ss_pred CCCEEEECCCCCCCCHHHHH-HHHCCCEEEE T ss_conf 88689981444789778999-9975984996 No 53 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=72.51 E-value=5.4 Score=19.97 Aligned_cols=102 Identities=11% Similarity=0.080 Sum_probs=66.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE--EECHHHHHHHC--CCCCEEEEC-------HHHHHHHHHHHHH Q ss_conf 972689985686308899999999998449826888--73377898730--678899988-------4478889999998 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIAN--SGAYGAHYDIM--GVYDLIILA-------PQVRSYYREMKVD 70 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~--A~~~~~~~~~~--~~~DiiLla-------PQv~~~~~~ik~~ 70 (105) ++-||++.|-+|=.-++=.+-+....+..|.++..- ..|..++-+.+ .+.|+|.++ |+++...+.+++. T Consensus 2 ~k~kVvi~~~~~D~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~~~~~~~~d~V~lS~~~~~~~~~~~~~i~~L~~~ 81 (137) T 1ccw_A 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEA 81 (137) T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHT T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 99879999459875589999999999987986997787679999999998639988977502422279899999999975 Q ss_pred HHHCCCCEEEEC---------------------CHHHCCCCCCHHHHHHHHHHHCC Q ss_conf 744289778718---------------------13310115798899999998629 Q T0580 71 AERLGIQIVATR---------------------GMEYIHLTKSPSKALQFVLEHYQ 105 (105) Q Consensus 71 ~~~~~ipv~~I~---------------------~~~Y~~~~~dg~k~l~~i~~~l~ 105 (105) - ..++|+.+=- ...|+++| +.+.+++++.+++| T Consensus 82 ~-~~~i~iivGG~~~~~~~~~~~~~~~~~~~G~~~vf~~gt-~~~~~~~~~~~~l~ 135 (137) T 1ccw_A 82 G-LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT-PPEVGIADLKKDLN 135 (137) T ss_dssp T-CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC-CHHHHHHHHHHHHT T ss_pred C-CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCC-CHHHHHHHHHHHHC T ss_conf 9-999979996787887556087999999759888979889-99999999999867 No 54 >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Probab=71.93 E-value=5.6 Score=19.89 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=40.1 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 72689985686308899999999998449826888733778987306788999884478889999998744289778718 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATR 82 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~ 82 (105) .|||.++|+|+.|. .+.+-++++...++.+|.++-.. +-| . ...+.+.++|+|+..++ T Consensus 1 m~rIavl~Sg~Gsn---l~all~a~~~g~~~~~Iv~Vitn-------~~~-------~-----~~~~~a~~~gIp~~~~~ 58 (216) T 2ywr_A 1 MLKIGVLVSGRGSN---LQAIIDAIESGKVNASIELVISD-------NPK-------A-----YAIERCKKHNVECKVIQ 58 (216) T ss_dssp CEEEEEEECSCCHH---HHHHHHHHHTTSSCEEEEEEEES-------CTT-------C-----HHHHHHHHHTCCEEECC T ss_pred CCEEEEEECCCCCH---HHHHHHHHHCCCCCCEEEEEEEC-------CCC-------C-----HHHHHHHHCCCCEEEEC T ss_conf 97899998289801---99999998779999869999973-------886-------5-----88999998799989857 Q ss_pred CHHH Q ss_conf 1331 Q T0580 83 GMEY 86 (105) Q Consensus 83 ~~~Y 86 (105) ...| T Consensus 59 ~~~~ 62 (216) T 2ywr_A 59 RKEF 62 (216) T ss_dssp GGGS T ss_pred CCCC T ss_conf 3468 No 55 >3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} Probab=71.68 E-value=5.7 Score=19.85 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=59.0 Q ss_pred EEEEECCC-CC---HHHHHHHHHHHHHHCCCCEEEEEECHHH------HHHH-CCCCCEEEECHHHHHHHHHHHHHHHHC Q ss_conf 89985686-30---8899999999998449826888733778------9873-067889998844788899999987442 Q T0580 6 VLVLCAGS-GT---SAQLANAINEGANLTEVRVIANSGAYGA------HYDI-MGVYDLIILAPQVRSYYREMKVDAERL 74 (105) Q Consensus 6 IlL~C~~G-~S---Ts~la~km~~~a~~~~~~~~i~A~~~~~------~~~~-~~~~DiiLlaPQv~~~~~~ik~~~~~~ 74 (105) |-++...- .+ -.-+...+++.++++|..+.+....... ++.. -.++|.+++.|..... +.+.+..... T Consensus 22 Igll~~~~~~~~~f~~~l~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~dgiIi~~~~~~~-~~~~~~~~~~ 100 (296) T 3brq_A 22 LGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEIDDIIDAH 100 (296) T ss_dssp EEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-HHHHHHHHTC T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCH-HHHHHHHHHC T ss_conf 999958866468699999999999999859999999689997999999999996499889974766774-8888888635 Q ss_pred CCCEEEECCHHH----CCCCCCHHHHHHHHHHHC Q ss_conf 897787181331----011579889999999862 Q T0580 75 GIQIVATRGMEY----IHLTKSPSKALQFVLEHY 104 (105) Q Consensus 75 ~ipv~~I~~~~Y----~~~~~dg~k~l~~i~~~l 104 (105) ++|++.++.... ....-|...+...+.++| T Consensus 101 ~~PvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l 134 (296) T 3brq_A 101 SQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAEL 134 (296) T ss_dssp SSCEEEESCCCSSSGGGEECCCHHHHHHHHHHHH T ss_pred CCCEEEECCCCCCCCCCEEEECCHHHHHHHHHHH T ss_conf 9868993676788888789966189999999999 No 56 >3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Probab=70.62 E-value=4.3 Score=20.55 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.6 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHH Q ss_conf 9972689985686308899999999 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINE 25 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~ 25 (105) .|.|||.+.-+||.=|+.++.-+++ T Consensus 4 ~k~~kv~V~~SGG~DS~~la~ll~~ 28 (203) T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK 28 (203) T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 5346189995376899999999997 No 57 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=67.73 E-value=6.9 Score=19.35 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=61.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH----HCCCCCEEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 9972689985686308899999999998449826888733778987----306788999884478889999998744289 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD----IMGVYDLIILAPQVRSYYREMKVDAERLGI 76 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~----~~~~~DiiLlaPQv~~~~~~ik~~~~~~~i 76 (105) +..+||+++-. .--|.+.+++.+.+++....+.-....+.-. ..+++|+|.-.=-...+ +++ ..++ T Consensus 2 ~~~~ki~~Iap----y~~l~~l~~~~a~e~~~~~~~~~~~l~e~~~iA~~l~~~~DVIISRGgta~~---Ir~---~~~i 71 (196) T 2q5c_A 2 SLSLKIALISQ----NENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDY---IKK---SVSI 71 (196) T ss_dssp CCCCEEEEEES----CHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHH---HHT---TCSS T ss_pred CCCEEEEEECC----CHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHCCCCEEEECCHHHHH---HHH---HCCC T ss_conf 86306999868----1899999999997517440133342999999999854499899989658999---998---4899 Q ss_pred CEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 77871813310115798899999998 Q T0580 77 QIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 77 pv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) ||+.|+.-.| |-=.+|+.+.+ T Consensus 72 PVVeI~vs~~-----Dil~al~~a~~ 92 (196) T 2q5c_A 72 PSISIKVTRF-----DTMRAVYNAKR 92 (196) T ss_dssp CEEEECCCHH-----HHHHHHHHHGG T ss_pred CEEEEECCHH-----HHHHHHHHHHH T ss_conf 8899707886-----89999999996 No 58 >2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri 2a str} SCOP: c.23.5.4 Probab=67.46 E-value=7 Score=19.32 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=29.3 Q ss_pred CCCCEEEEEECCC---CCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9972689985686---308899999999998449826888 Q T0580 1 SKELKVLVLCAGS---GTSAQLANAINEGANLTEVRVIAN 37 (105) Q Consensus 1 ~k~~kIlL~C~~G---~STs~la~km~~~a~~~~~~~~i~ 37 (105) +.+.|||++|++- -.|..++....+.+++.|.++++. T Consensus 56 ~~p~KIL~i~GS~R~~S~s~~La~~a~~~l~~~Gaeveii 95 (279) T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIF 95 (279) T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEB T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 9998699996989987868999999999988769979997 No 59 >2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} Probab=66.39 E-value=7.3 Score=19.19 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=37.9 Q ss_pred CCCCEEEEEECC---CCCHHHHHHHHHHHHHHCCCCEEEEEE--------------CHHHHHHHCCCCCEEEE Q ss_conf 997268998568---630889999999999844982688873--------------37789873067889998 Q T0580 1 SKELKVLVLCAG---SGTSAQLANAINEGANLTEVRVIANSG--------------AYGAHYDIMGVYDLIIL 56 (105) Q Consensus 1 ~k~~kIlL~C~~---G~STs~la~km~~~a~~~~~~~~i~A~--------------~~~~~~~~~~~~DiiLl 56 (105) +++-||+++|++ +-.|..|++.+.+.+++.|.++++.-. ...++.+.+.+.|.+++ T Consensus 32 ~~~pKIl~I~GS~R~~S~~~~La~~~~~~l~~~G~ev~iidL~dlpl~~~~~~~~~~v~~l~~~i~~ADgvIi 104 (247) T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW 104 (247) T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEE T ss_conf 8999799995899998889999999999888759869997043287654677898899999999985892799 No 60 >3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Probab=66.08 E-value=4.8 Score=20.29 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=28.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC-EEEE--EECHHHHHH Q ss_conf 97268998568630889999999999844982-6888--733778987 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVR-VIAN--SGAYGAHYD 46 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~-~~i~--A~~~~~~~~ 46 (105) +..+|+++|.+|..|...+..+++.--+.... .+|. ..++..-.. T Consensus 71 ~~~~ivv~c~~G~rs~~a~~~L~~~G~~~~~~~~~v~~l~GG~~~W~~ 118 (127) T 3i2v_A 71 AAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAA 118 (127) T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHH T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHH T ss_conf 786699988998369999999998398333588677996587999987 No 61 >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* Probab=65.99 E-value=7.2 Score=19.26 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=23.8 Q ss_pred CCCEEEEEE-------CCCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 972689985-------6863088999999999984498268887 Q T0580 2 KELKVLVLC-------AGSGTSAQLANAINEGANLTEVRVIANS 38 (105) Q Consensus 2 k~~kIlL~C-------~~G~STs~la~km~~~a~~~~~~~~i~A 38 (105) ++||||+++ .||+.. .+..+-++..++|.++.|-+ T Consensus 1 ~~MkIl~i~~~~pP~~~GG~~~--~~~~La~~L~~~Gh~V~vit 42 (439) T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAE--ALTAISEALASLGHEVLVFT 42 (439) T ss_dssp CCCEEEEECSCCTTSCSSSHHH--HHHHHHHHHHHTTCEEEEEE T ss_pred CCEEEEEECCCCCCCCCCCHHH--HHHHHHHHHHHCCCEEEEEE T ss_conf 9708999888569745687999--99999999997699899991 No 62 >2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Probab=65.81 E-value=4.9 Score=20.23 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=24.4 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 972689985686308899999999998449826888733 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA 40 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~ 40 (105) +.-.|++.|.+|.+|...+..+++ .|.+-.....+ T Consensus 40 k~~~ivi~C~sg~rs~~a~~~L~~----~Gy~~v~~~gG 74 (85) T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSE----MGYTHVENAGG 74 (85) T ss_dssp TTSEEEEEESSSHHHHHHHHHHHH----TTCSSEEEEEE T ss_pred CCCEEEEECCCCHHHHHHHHHHHH----CCCCEEEECHH T ss_conf 887799988999699999999998----59997997662 No 63 >2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} Probab=65.70 E-value=7.6 Score=19.11 Aligned_cols=73 Identities=8% Similarity=-0.003 Sum_probs=47.6 Q ss_pred CCCCHHH---HHHHHHHHHHHCCCCEEEEEECHH---H---HHHHC-CCCCE--EEECHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 8630889---999999999844982688873377---8---98730-67889--99884478889999998744289778 Q T0580 12 GSGTSAQ---LANAINEGANLTEVRVIANSGAYG---A---HYDIM-GVYDL--IILAPQVRSYYREMKVDAERLGIQIV 79 (105) Q Consensus 12 ~G~STs~---la~km~~~a~~~~~~~~i~A~~~~---~---~~~~~-~~~Di--iLlaPQv~~~~~~ik~~~~~~~ipv~ 79 (105) -.++..+ +.+-+++++++.|.++.+...... + ++..+ ...|. +.+.|.=......+-+.+.+.|+|++ T Consensus 13 ~~l~npf~~~~~~g~~~~a~~~g~~~~~~~~~~d~~~q~~~~~~~i~~~~d~iii~~~p~d~~~~~~~i~~a~~~gIpVV 92 (332) T 2rjo_A 13 RSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVT 92 (332) T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEE T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 88888899999999999999719989999589999999999999996599989998277645767999999998699299 Q ss_pred EECCH Q ss_conf 71813 Q T0580 80 ATRGM 84 (105) Q Consensus 80 ~I~~~ 84 (105) .++.. T Consensus 93 ~~~~~ 97 (332) T 2rjo_A 93 TIWNK 97 (332) T ss_dssp EESCC T ss_pred EECCC T ss_conf 96366 No 64 >3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} Probab=65.47 E-value=7.7 Score=19.09 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=52.0 Q ss_pred CCCCEEEEEEC-CCCCHHH---HHHHHHHHHHHCCCCEEEEEEC-HH-------HHHHHC-CCCCEEEECHHHHHHHHHH Q ss_conf 99726899856-8630889---9999999998449826888733-77-------898730-6788999884478889999 Q T0580 1 SKELKVLVLCA-GSGTSAQ---LANAINEGANLTEVRVIANSGA-YG-------AHYDIM-GVYDLIILAPQVRSYYREM 67 (105) Q Consensus 1 ~k~~kIlL~C~-~G~STs~---la~km~~~a~~~~~~~~i~A~~-~~-------~~~~~~-~~~DiiLlaPQv~~~~~~i 67 (105) .|+.+|.++=- ..-|+.+ +.+-++++|++.|..+.+.... .. .++..+ .++|.|++.|--.-..... T Consensus 3 ~k~~~i~~i~~v~d~sn~f~~~~~~G~~~~a~~~g~~v~~~~~~~~~d~~~q~~~i~~li~~~~DgIIi~~~~~~~~~~~ 82 (289) T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA 82 (289) T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH T ss_conf 78718999985589998899999999999999749989999689988999999999999975999999977862104899 Q ss_pred HHHHHHCCCCEEEECCHH Q ss_conf 998744289778718133 Q T0580 68 KVDAERLGIQIVATRGME 85 (105) Q Consensus 68 k~~~~~~~ipv~~I~~~~ 85 (105) -+.+...++|+..++... T Consensus 83 ~~~~~~~~ipvv~~d~~~ 100 (289) T 3brs_A 83 AKEIKDAGIKLIVIDSGM 100 (289) T ss_dssp HTTTGGGTCEEEEESSCC T ss_pred HHHHHHCCCCEEEEECCC T ss_conf 999986799489970456 No 65 >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Probab=65.35 E-value=7.7 Score=19.07 Aligned_cols=97 Identities=8% Similarity=-0.059 Sum_probs=55.4 Q ss_pred EEEEEC--CCCCHHHHHHHHHHHHHHCCCCEEEEEECHH-------HHHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCC Q ss_conf 899856--8630889999999999844982688873377-------898730-678899988447888999999874428 Q T0580 6 VLVLCA--GSGTSAQLANAINEGANLTEVRVIANSGAYG-------AHYDIM-GVYDLIILAPQVRSYYREMKVDAERLG 75 (105) Q Consensus 6 IlL~C~--~G~STs~la~km~~~a~~~~~~~~i~A~~~~-------~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ 75 (105) |-++.. ..--.+-+.+-+++.+++.|.++.+...... .+.... ..+|-+++.|--. .++.-+.+.+.+ T Consensus 11 Igvv~p~~~~~f~~~li~gi~~~a~~~g~~l~l~~~~~~d~~~~~~~i~~l~~~~vdGvI~~~~~~--~~~~~~~l~~~~ 88 (290) T 3clk_A 11 IAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIAL--TDDNLQLLQSSD 88 (290) T ss_dssp EEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC------CHHHHHCC- T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCC--CHHHHHHHHHCC T ss_conf 999949997689999999999999985998999968999999999999999867988899960334--559999998468 Q ss_pred CCEEEECCHH---HCCCCCCHHHHHHHHHHHC Q ss_conf 9778718133---1011579889999999862 Q T0580 76 IQIVATRGME---YIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 76 ipv~~I~~~~---Y~~~~~dg~k~l~~i~~~l 104 (105) +|++.++... +.+...|-..+-..+.++| T Consensus 89 iPvV~~~~~~~~~~~~V~~d~~~~~~~a~~~L 120 (290) T 3clk_A 89 VPYCFLSMGFDDDRPFISSDDEDIGYQATNLL 120 (290) T ss_dssp -CEEEESCC--CCSCEEECCHHHHHHHHHHHH T ss_pred CCEEECCCCCCCCCCEEEECCHHHHHHHHHHH T ss_conf 87893466689999889967689999999999 No 66 >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=65.32 E-value=5.1 Score=20.10 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=52.9 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-------------HHHHH--HHCCCCCEEEECH-------- Q ss_conf 972689985686308899999999998449826888733-------------77898--7306788999884-------- Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA-------------YGAHY--DIMGVYDLIILAP-------- 58 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~-------------~~~~~--~~~~~~DiiLlaP-------- 58 (105) +.||||++=+||-- +-++.++.+.. ..+..+| ..... ....+.|++.+|| T Consensus 14 ~~~rVLviGsGGRE-HAia~~l~~s~------~~v~~~pgN~g~~~~~~~~~~~~~~~~~~~~~~dlvivgpE~pL~~gl 86 (412) T 1vkz_A 14 KAVRVHILGSGGRE-HAIGWAFAKQG------YEVHFYPGNAGTKRDGTNHPYEGEKTLKAIPEEDIVIPGSEEFLVEGV 86 (412) T ss_dssp --CEEEEEECSHHH-HHHHHHHHHTT------CEEEEEECCTTGGGTSEECCCCTHHHHHTSCSSCEECCSSGGGTCC-- T ss_pred CCCEEEEECCCHHH-HHHHHHHHCCC------CEEEEECCCHHHHHHCCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHH T ss_conf 06789998939999-99999985699------808997998799752644675217877752479989989888999879 Q ss_pred ---------------HHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf ---------------47888999999874428977871813310115798899999998 Q T0580 59 ---------------QVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 59 ---------------Qv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) |+-.-+.-.|+.+.++|||.. .-+.+ .|-+.+.+++.+ T Consensus 87 ~d~~~~vfGP~~~aA~LE~SK~fak~~m~~~~IPta----~~~~~--~~~~ea~~~~~~ 139 (412) T 1vkz_A 87 SNWRSNVFGPVKEVARLEGSKVYAKRFMKKYGIRTA----RFEVA--ETPEELREKIKK 139 (412) T ss_dssp ---CTTBSSCCHHHHHHHHCHHHHHHHHHHTTCCCC----CEEEE--SSHHHHHHHHTT T ss_pred HHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCC----CEECC--CCCCCCCCHHHH T ss_conf 873997458888998888889999999985385455----30003--233211110121 No 67 >1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* Probab=65.16 E-value=7.8 Score=19.05 Aligned_cols=79 Identities=9% Similarity=0.112 Sum_probs=50.9 Q ss_pred CCCEEEEEECCCCCH---HHHHHHHHHHHHHCCCCEEEEEEC---HH-------HHHHHC-CCCCEEEECHHHHHHHHHH Q ss_conf 972689985686308---899999999998449826888733---77-------898730-6788999884478889999 Q T0580 2 KELKVLVLCAGSGTS---AQLANAINEGANLTEVRVIANSGA---YG-------AHYDIM-GVYDLIILAPQVRSYYREM 67 (105) Q Consensus 2 k~~kIlL~C~~G~ST---s~la~km~~~a~~~~~~~~i~A~~---~~-------~~~~~~-~~~DiiLlaPQv~~~~~~i 67 (105) |..+|.++.-+.-+| +-+...+++.+.+.|.++.+.-.. .. .+...+ .+.|.+++.|--....+.+ T Consensus 42 k~~~I~vi~p~~~~s~y~~~~~~g~~~~~~~~g~~~~i~~~~~~~~~d~~~q~~~i~~~i~~~~DgiIi~~~~~~~~~~i 121 (342) T 1jx6_A 42 RPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342) T ss_dssp SCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH T ss_conf 99679999799987889999999999999976994799998548986999999999999973999899937862219999 Q ss_pred HHHHHHCCCCEEE Q ss_conf 9987442897787 Q T0580 68 KVDAERLGIQIVA 80 (105) Q Consensus 68 k~~~~~~~ipv~~ 80 (105) +..++..++||.. T Consensus 122 ~~~~~~~~~~Vv~ 134 (342) T 1jx6_A 122 EHVLDSTNTKLIL 134 (342) T ss_dssp HHHHHHCSCEEEE T ss_pred HHHHHHCCCEEEE T ss_conf 9999809985998 No 68 >1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} SCOP: c.2.1.3 d.81.1.5 Probab=64.75 E-value=7.4 Score=19.16 Aligned_cols=94 Identities=10% Similarity=0.149 Sum_probs=56.3 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-------------------CHHHHHHHC--CCCCEEEECHHH Q ss_conf 97268998568630889999999999844982688873-------------------377898730--678899988447 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG-------------------AYGAHYDIM--GVYDLIILAPQV 60 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~-------------------~~~~~~~~~--~~~DiiLlaPQv 60 (105) |++||-++=.|+++..+-+..+++. .-.+++.|. -+.++++.+ .+.|+|.++-.- T Consensus 17 k~lkiaiIG~G~~g~~~h~~~l~~~----~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~V~I~tp~ 92 (340) T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 92 (340) T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG T ss_pred CCCEEEEECCCHHHHHHHHHHHHHC----CCCEEEEEEECCCHHHHHHHHHHCCCCCEECCHHHHHHCCCCCEEEECCCE T ss_conf 6888999948999999999999838----997689999899999999999983998440889999718876546421210 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 888999999874428977871813310115798899999998 Q T0580 61 RSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 61 ~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) .++.+-+.+.. +.|++|.+=.|.....- +.+++++.+.+ T Consensus 93 ~~H~~~~~~al-~~gk~V~~EKP~a~~~~--e~~~l~~~a~~ 131 (340) T 1zh8_A 93 ELNLPFIEKAL-RKGVHVICEKPISTDVE--TGKKVVELSEK 131 (340) T ss_dssp GGHHHHHHHHH-HTTCEEEEESSSSSSHH--HHHHHHHHHHH T ss_pred ECCCCCCCCCC-CCCHHHHHCCCCCCCCC--CCCCCCCCCCC T ss_conf 00122111223-32112220434321212--22222212222 No 69 >3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Nostoc SP} PDB: 2klb_A Probab=64.46 E-value=8 Score=18.97 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=57.7 Q ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEE----CHHHHHHHCCCCCEEEECH-------HHHHHHHHHHHH Q ss_conf 72689985686-30889999999999844982688873----3778987306788999884-------478889999998 Q T0580 3 ELKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSG----AYGAHYDIMGVYDLIILAP-------QVRSYYREMKVD 70 (105) Q Consensus 3 ~~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~----~~~~~~~~~~~~DiiLlaP-------Qv~~~~~~ik~~ 70 (105) +-+|+++..+- .+|--||+.+.+.+.+.|+++.+.-. +.....+.+.++|.+++|- -+...++.+... T Consensus 4 ~kkV~IvY~S~tGnTe~~A~~Ia~gl~~~gv~v~~~~~~~~~~~~~~~~~l~~~~~i~~G~~~~~~~~~~~~~~~~l~~~ 83 (159) T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASAASIQGALSTILGS 83 (159) T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHC T ss_conf 88899999999972999999999999852992375423657866889999975898997687655540299999999860 Q ss_pred HHHCCCCEEEECCHHHCCC Q ss_conf 7442897787181331011 Q T0580 71 AERLGIQIVATRGMEYIHL 89 (105) Q Consensus 71 ~~~~~ipv~~I~~~~Y~~~ 89 (105) . -.|.++.+.- -|+|. T Consensus 84 ~-~~~k~~~vFg--s~g~~ 99 (159) T 3fni_A 84 V-NEKQAVGIFE--TGGGD 99 (159) T ss_dssp C-CTTSEEEEEC--CSSSC T ss_pred C-CCCCEEEEEE--ECCCC T ss_conf 5-2798799998--26898 No 70 >3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} Probab=64.20 E-value=8.1 Score=18.94 Aligned_cols=85 Identities=9% Similarity=0.032 Sum_probs=52.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHH--HHH----HC-CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH----H Q ss_conf 899999999998449826888733778--987----30-678899988447888999999874428977871813----3 Q T0580 17 AQLANAINEGANLTEVRVIANSGAYGA--HYD----IM-GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM----E 85 (105) Q Consensus 17 s~la~km~~~a~~~~~~~~i~A~~~~~--~~~----~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~----~ 85 (105) +-+.+.+.++++++|..+.+....... ..+ .. ..+|-+++.|.-. .+.+ ....+.++|++.++.. . T Consensus 23 ~~li~gi~~~~~~~gy~~~i~~s~~~~~~e~~~i~~l~~~~vdgiIi~~~~~--~~~~-~~l~~~~iPvV~i~~~~~~~~ 99 (276) T 3jy6_A 23 TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTV-QEILHQQMPVVSVDREMDACP 99 (276) T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHH-HHHHTTSSCEEEESCCCTTCS T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC--HHHH-HHHHHCCCCEEEECCCCCCCC T ss_conf 9999999999998699999995899989999999999967998999945789--5999-999975998999277788889 Q ss_pred HCCCCCCHHHHHHHHHHHC Q ss_conf 1011579889999999862 Q T0580 86 YIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 86 Y~~~~~dg~k~l~~i~~~l 104 (105) +-+...|..++...+.++| T Consensus 100 ~~~V~~D~~~~~~~~~~~L 118 (276) T 3jy6_A 100 WPQVVTDNFEAAKAATTAF 118 (276) T ss_dssp SCEEECCHHHHHHHHHHHH T ss_pred CCEEEECHHHHHHHHCCCH T ss_conf 8889954699755402101 No 71 >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.50A {Geobacter metallireducens gs-15} Probab=63.88 E-value=8 Score=18.97 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=36.6 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHH--------------HHHCCCCE-------EEEEECHHHHHHHCCCCCEEEECHHH- Q ss_conf 726899856863088999999999--------------98449826-------88873377898730678899988447- Q T0580 3 ELKVLVLCAGSGTSAQLANAINEG--------------ANLTEVRV-------IANSGAYGAHYDIMGVYDLIILAPQV- 60 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~--------------a~~~~~~~-------~i~A~~~~~~~~~~~~~DiiLlaPQv- 60 (105) .|||+++.+|++. ++++..+.+. .+++|+.+ .+.........+..+++|+|+++..- T Consensus 2 ~MkI~IiGaGaiG-~~~a~~L~~aG~~Vtlv~R~~~~~i~~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D~viv~vK~~ 80 (312) T 3hn2_A 2 SLRIAIVGAGALG-LYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLVGLKTF 80 (312) T ss_dssp --CEEEECCSTTH-HHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEECCCGG T ss_pred CCEEEEECCCHHH-HHHHHHHHHCCCCEEEEECCHHHHHHHCCEEEECCCCCEEECCCEEECCHHHCCCCEEEEEEECCC T ss_conf 9889998959999-999999984699459996876999997793998069977846602306856748850899971566 Q ss_pred --HHHHHHHHH Q ss_conf --888999999 Q T0580 61 --RSYYREMKV 69 (105) Q Consensus 61 --~~~~~~ik~ 69 (105) .-..+.++. T Consensus 81 ~~~~~~~~l~~ 91 (312) T 3hn2_A 81 ANSRYEELIRP 91 (312) T ss_dssp GGGGHHHHHGG T ss_pred CCHHHHHHHCC T ss_conf 60556666312 No 72 >3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} Probab=62.88 E-value=8.6 Score=18.80 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=53.6 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHH-----HHHHC--CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECC----H Q ss_conf 8899999999998449826888733778-----98730--67889998844788899999987442897787181----3 Q T0580 16 SAQLANAINEGANLTEVRVIANSGAYGA-----HYDIM--GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRG----M 84 (105) Q Consensus 16 Ts~la~km~~~a~~~~~~~~i~A~~~~~-----~~~~~--~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~----~ 84 (105) .+-|+..+.++++++|.++.+....... ..+.+ ..+|.+++.|--.. +...+...+.|+|++.++. . T Consensus 25 ~~~~i~gi~~~~~~~gy~l~v~~~~~~~~~~~~~~~~l~~~~vdgiIl~~~~~~--~~~~~~~~~~~iPvV~i~~~~~~~ 102 (288) T 3gv0_A 25 TSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN--DPRVRFMTERNMPFVTHGRSDMGI 102 (288) T ss_dssp HHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT--CHHHHHHHHTTCCEEEESCCCSSC T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC--HHHHHHHHHCCCCCEECCCCCCCC T ss_conf 999999999999986998999968999699999999986389777987402332--167787775149722001135799 Q ss_pred HHCCCCCCHHHHHHHHHHHC Q ss_conf 31011579889999999862 Q T0580 85 EYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 85 ~Y~~~~~dg~k~l~~i~~~l 104 (105) .+.+...|...+...+.++| T Consensus 103 ~~~~V~~d~~~a~~~a~~~L 122 (288) T 3gv0_A 103 EHAFHDFDNEAYAYEAVERL 122 (288) T ss_dssp CCEEEEECHHHHHHHHHHHH T ss_pred CCCEEECCCCHHHHHHHHHH T ss_conf 87668535525677777776 No 73 >2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis F11} Probab=61.83 E-value=4.9 Score=20.20 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=17.6 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH Q ss_conf 972689985686308899999999 Q T0580 2 KELKVLVLCAGSGTSAQLANAINE 25 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~ 25 (105) +.-+|+++|.+|..|...+..+++ T Consensus 79 ~d~~Ivv~C~~G~rS~~aa~~L~~ 102 (148) T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATE 102 (148) T ss_dssp --CCEEEECSSSSTHHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHH T ss_conf 998699987988789999999997 No 74 >1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Probab=61.56 E-value=4.6 Score=20.38 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=21.5 Q ss_pred CCCEEEEEECCCCCH----HHH-HHHHHHHHHHCCCCE Q ss_conf 972689985686308----899-999999998449826 Q T0580 2 KELKVLVLCAGSGTS----AQL-ANAINEGANLTEVRV 34 (105) Q Consensus 2 k~~kIlL~C~~G~ST----s~l-a~km~~~a~~~~~~~ 34 (105) ++|||.++|+ |-|+ |+. +..+-+++++.|.++ T Consensus 2 ~k~kv~il~G-G~S~E~~vSl~S~~~i~~aL~~~g~~v 38 (343) T 1e4e_A 2 NRIKVAILFG-GCSEEHDVSVKSAIEIAANINKEKYEP 38 (343) T ss_dssp CCEEEEEEEE-CSSTTHHHHHHHHHHHHHHSCTTTEEE T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHCCCEE T ss_conf 9878999938-885313749999999999988729979 No 75 >3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A Probab=61.15 E-value=5.2 Score=20.04 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=21.5 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 972689985686308899999999998449826 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRV 34 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~ 34 (105) +...|++.|.+|..|...+..++ +.|.+. T Consensus 55 ~~~~vv~~C~~G~rs~~aa~~L~----~~G~~~ 83 (103) T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLE----ANGIDA 83 (103) T ss_dssp TTSEEEEECSSSSHHHHHHHHHH----TTTCEE T ss_pred CCCCCEEECCCCHHHHHHHHHHH----HCCCCE T ss_conf 23451005799654999999999----869977 No 76 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Probab=61.10 E-value=9.2 Score=18.61 Aligned_cols=99 Identities=5% Similarity=-0.022 Sum_probs=56.4 Q ss_pred CCCCEEEEEECCCCCHHHHH---------------------HHHHHHHHHCCCC-EEEEEECHHHHHHHCC--CCCEEEE Q ss_conf 99726899856863088999---------------------9999999844982-6888733778987306--7889998 Q T0580 1 SKELKVLVLCAGSGTSAQLA---------------------NAINEGANLTEVR-VIANSGAYGAHYDIMG--VYDLIIL 56 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la---------------------~km~~~a~~~~~~-~~i~A~~~~~~~~~~~--~~DiiLl 56 (105) .|++||-++=.|++....+- ++.++.+++.+.+ ..+.+..+.++++.++ +.|+|++ T Consensus 18 ~kkiriavIG~G~~G~~h~~~~~~~~~~elvav~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~iDaV~I 97 (444) T 2ixa_A 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFV 97 (444) T ss_dssp -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEEE T ss_conf 98768999958399999999997189948999976988899999999998388632002654576999954899988998 Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 8447888999999874428977871813310115798899999998 Q T0580 57 APQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 57 aPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) +-.-..+.+-+.+.. +.|++|.+=-|..-..- +..++++.+.+ T Consensus 98 aTP~~~H~~~~~~al-~aGkhVl~EKPl~~t~~--e~~~l~~~a~~ 140 (444) T 2ixa_A 98 SSPWEWHHEHGVAAM-KAGKIVGMEVSGAITLE--ECWDYVKVSEQ 140 (444) T ss_dssp CCCGGGHHHHHHHHH-HTTCEEEECCCCCSSHH--HHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHH--HHHHHHHHHHH T ss_conf 488075899999998-62966774178979999--99999999998 No 77 >3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485} Probab=60.96 E-value=9.3 Score=18.59 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=50.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHH-----HHHHC--CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHH---- Q ss_conf 899999999998449826888733778-----98730--6788999884478889999998744289778718133---- Q T0580 17 AQLANAINEGANLTEVRVIANSGAYGA-----HYDIM--GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGME---- 85 (105) Q Consensus 17 s~la~km~~~a~~~~~~~~i~A~~~~~-----~~~~~--~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~---- 85 (105) +-+++.+.+.+.++|..+.+....... +.+.+ ...|-+++.|--.. .+.+ +...+.++|++.++... T Consensus 24 ~~~~~~i~~~a~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vDGiIl~~~~~~-~~~~-~~l~~~~iPvV~i~~~~~~~~ 101 (287) T 3bbl_A 24 DQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-DPRV-QFLLKQKFPFVAFGRSNPDWD 101 (287) T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT-CHHH-HHHHHTTCCEEEESCCSTTCC T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHH-HHHHHCCCCEEEECCCCCCCC T ss_conf 99999999999987999999958999899999999998389878999789899-8999-999977997999887688899 Q ss_pred HCCCCCCHHHHHHHHHHHC Q ss_conf 1011579889999999862 Q T0580 86 YIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 86 Y~~~~~dg~k~l~~i~~~l 104 (105) +.+...|-.++...+.+.| T Consensus 102 ~~~V~~D~~~a~~~a~~~L 120 (287) T 3bbl_A 102 FAWVDIDGTAGTRQAVEYL 120 (287) T ss_dssp CCEEEECHHHHHHHHHHHH T ss_pred CCEEEECHHHHHHHHHHHH T ss_conf 8789838999999999999 No 78 >1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus pcc 7942} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* Probab=60.81 E-value=9.3 Score=18.58 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=33.8 Q ss_pred EEEEEECC-CCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC Q ss_conf 68998568-630889999999999844982688873377898730678899988 Q T0580 5 KVLVLCAG-SGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA 57 (105) Q Consensus 5 kIlL~C~~-G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla 57 (105) ||.|+.++ ..+|--+|+++.+.+...+. .++........ +.+.++|.++++ T Consensus 2 KI~I~Y~S~tGnTe~vA~~ia~~l~~~g~-~~~~~~~~~~~-~~l~~~d~li~g 53 (169) T 1czn_A 2 KIGLFYGTQTGVTQTIAESIQQEFGGESI-VDLNDIANADA-SDLNAYDYLIIG 53 (169) T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHTSTTT-EEEEEGGGCCG-GGGGGCSEEEEE T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCC-EEEEECCCCCH-HHHHCCCCEEEE T ss_conf 09999999973599999999999843798-68985364899-898508763999 No 79 >1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} SCOP: c.94.1.1 Probab=60.10 E-value=9.6 Score=18.50 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=46.2 Q ss_pred CCCEEEEEECCCCCH-HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEEC Q ss_conf 972689985686308-89999999999844982688873377898730--678899988 Q T0580 2 KELKVLVLCAGSGTS-AQLANAINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILA 57 (105) Q Consensus 2 k~~kIlL~C~~G~ST-s~la~km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLla 57 (105) +++++.+.+..|-++ .-++..+++..++-|+++++...+...+...+ .++|+++.+ T Consensus 365 ~~l~l~l~~~~~~~~~~~~a~~i~~~l~~~GI~v~i~~~~~~~~~~~~~~g~~d~~~~~ 423 (547) T 1vr5_A 365 KPFKLTIECPYGWTDWMVSIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNN 423 (547) T ss_dssp CCCCEEEECCTTCHHHHHHHHHHHHHHHTTTCCEEEECCCHHHHHHHHHHTCCSEEEEC T ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHC T ss_conf 66421323688862678999999999764020033222211244443321210133205 No 80 >2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} Probab=59.41 E-value=9.9 Score=18.43 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=57.0 Q ss_pred EEEEEECCCCCHHH---HHHHHHHHHHHCCCCEEEEEECHHH------HHHHC-CCCCEEEECHHHHHHHHHHHHHHHHC Q ss_conf 68998568630889---9999999998449826888733778------98730-67889998844788899999987442 Q T0580 5 KVLVLCAGSGTSAQ---LANAINEGANLTEVRVIANSGAYGA------HYDIM-GVYDLIILAPQVRSYYREMKVDAERL 74 (105) Q Consensus 5 kIlL~C~~G~STs~---la~km~~~a~~~~~~~~i~A~~~~~------~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~ 74 (105) .|-+++. ..++.+ +.+.+++.++++|..+.+....... ++... ...|.+++.|...-..+.+ +..... T Consensus 22 ~Igvv~p-~~~~~f~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~-~~~~~~ 99 (293) T 2iks_A 22 SIGLVIP-DLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFY-QRWAND 99 (293) T ss_dssp EEEEEES-CSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHH-HTTTTS T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH-HHHHHC T ss_conf 8999939-99887999999999999998699999995899979999999999866998899970554457999-999857 Q ss_pred CCCEEEECCH----HHCCCCCCHHHHHHHHHHHC Q ss_conf 8977871813----31011579889999999862 Q T0580 75 GIQIVATRGM----EYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 75 ~ipv~~I~~~----~Y~~~~~dg~k~l~~i~~~l 104 (105) ++|++.++.. .+.....|-..+...+.++| T Consensus 100 ~ipvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l 133 (293) T 2iks_A 100 PFPIVALDRALDREHFTSVVGADQDDAEMLAEEL 133 (293) T ss_dssp SSCEEEEESCCCTTTCEEEEECHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHH T ss_conf 9938999514566777647326088999999998 No 81 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=59.01 E-value=10 Score=18.39 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=28.1 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE-----------------ECHHHHHHHC--CCCCEEEECHHH Q ss_conf 26899856863088999999999984498268887-----------------3377898730--678899988447 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS-----------------GAYGAHYDIM--GVYDLIILAPQV 60 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A-----------------~~~~~~~~~~--~~~DiiLlaPQv 60 (105) ||||++=+||-- +-++.++.+. ..++ .+.. .....+.+.. .+.|++++||+. T Consensus 1 MkvLviGsGgrE-hai~~~l~~~---~~~~-~v~~~pgN~g~~~~~~~v~~~~d~~~i~~~~~~~~id~vivGpE~ 71 (417) T 2ip4_A 1 MKVLVVGSGGRE-HALLWKAAQS---PRVK-RLYAAPGNAGMEALAELVPWNGDVEALADWALAEGIDLTLVGPEA 71 (417) T ss_dssp CEEEEEESSHHH-HHHHHHHHTC---SSCC-EEEEEECCTTGGGTSEECCCCSCHHHHHHHHHHHTCCEEEECSSH T ss_pred CEEEEECCCHHH-HHHHHHHHHC---CCCC-EEEEECCCHHHHHHCEEECCCCCHHHHHHHHHHHCCCEEEECCCH T ss_conf 989998968899-9999999859---9989-899978975766407454676898999999998499999989738 No 82 >3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} Probab=58.96 E-value=10 Score=18.39 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=52.2 Q ss_pred CCCEEEEEECCCCCHHH---HHHHHHHHHHHC---CCCEEEEEECHH---H----HHHHC-CCCCEEEECHHHHHHHHHH Q ss_conf 97268998568630889---999999999844---982688873377---8----98730-6788999884478889999 Q T0580 2 KELKVLVLCAGSGTSAQ---LANAINEGANLT---EVRVIANSGAYG---A----HYDIM-GVYDLIILAPQVRSYYREM 67 (105) Q Consensus 2 k~~kIlL~C~~G~STs~---la~km~~~a~~~---~~~~~i~A~~~~---~----~~~~~-~~~DiiLlaPQv~~~~~~i 67 (105) |..+|.++.-...++.+ +.+-+++++++. ++.+.+...+.. + ++..+ .++|.+++.|--......+ T Consensus 7 k~~~i~~l~P~~~~~~y~~~i~~Gi~~aa~e~~~~~v~v~~~~~~~~d~~~~~~~l~~li~~~vDgiii~~~~~~~~~~~ 86 (304) T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304) T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH T ss_conf 98889999889888989999999999999973788879999958989999999999999973999899727883121899 Q ss_pred HHHHHHCCCCEEEECCHH Q ss_conf 998744289778718133 Q T0580 68 KVDAERLGIQIVATRGME 85 (105) Q Consensus 68 k~~~~~~~ipv~~I~~~~ 85 (105) -+.+.+.++|+..++... T Consensus 87 ~~~~~~~~i~vv~~~~~~ 104 (304) T 3gbv_A 87 TDALNELGIPYIYIDSQI 104 (304) T ss_dssp HHHHHHHTCCEEEESSCC T ss_pred HHHHHHCCCCEEEEEECC T ss_conf 999986699679984046 No 83 >1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Probab=58.81 E-value=6.2 Score=19.63 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=14.5 Q ss_pred CCEEEEEECCCCCHHHHHHHHHH Q ss_conf 72689985686308899999999 Q T0580 3 ELKVLVLCAGSGTSAQLANAINE 25 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~ 25 (105) .-.|+++|.+|..|...+..+++ T Consensus 74 d~~iv~~C~~G~rS~~aa~~L~~ 96 (134) T 1vee_A 74 NTTLYILDKFDGNSELVAELVAL 96 (134) T ss_dssp GCEEEEECSSSTTHHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHH T ss_conf 88378896886302789999998 No 84 >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Probab=58.60 E-value=10 Score=18.35 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=48.3 Q ss_pred CEEEEEECCCCCHHH---HHHHHHHHHHHCCCCEEEEEECHH------HHHHHC-C--CCCEEEECHHHHHHHHHHHHHH Q ss_conf 268998568630889---999999999844982688873377------898730-6--7889998844788899999987 Q T0580 4 LKVLVLCAGSGTSAQ---LANAINEGANLTEVRVIANSGAYG------AHYDIM-G--VYDLIILAPQVRSYYREMKVDA 71 (105) Q Consensus 4 ~kIlL~C~~G~STs~---la~km~~~a~~~~~~~~i~A~~~~------~~~~~~-~--~~DiiLlaPQv~~~~~~ik~~~ 71 (105) ..|+.+.-+..+.++ +.+-++++|++.|.++.+...... .++..+ . +.+++.+.+. ....+.+.+.+ T Consensus 4 ~sVvf~~P~~~~~pF~~~i~~gie~aa~~~G~~l~i~~s~~d~~~q~~~i~~li~~~~~~~~i~~~~~-~~~~~~i~~~a 82 (350) T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE-QYVAPQILRLS 82 (350) T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC-SSHHHHHHHHH T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCCCHHHHHHH T ss_conf 79999869988898999999999999997399899994899999999999999847998699997784-20369999999 Q ss_pred HHCCCCEEEECC Q ss_conf 442897787181 Q T0580 72 ERLGIQIVATRG 83 (105) Q Consensus 72 ~~~~ipv~~I~~ 83 (105) .+.|+|++.++. T Consensus 83 ~~~gIPvV~id~ 94 (350) T 3h75_A 83 QGSGIKLFIVNS 94 (350) T ss_dssp TTSCCEEEEEES T ss_pred HHCCCEEEEECC T ss_conf 977994999266 No 85 >2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} Probab=58.55 E-value=5.7 Score=19.82 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=55.2 Q ss_pred EEEEECCCCCHHH---HHHHHHHHHHHCCCCEEEEEECHHH------HHHH-CCCCCEEEECHHHHHHHHHHHHHHHHCC Q ss_conf 8998568630889---9999999998449826888733778------9873-0678899988447888999999874428 Q T0580 6 VLVLCAGSGTSAQ---LANAINEGANLTEVRVIANSGAYGA------HYDI-MGVYDLIILAPQVRSYYREMKVDAERLG 75 (105) Q Consensus 6 IlL~C~~G~STs~---la~km~~~a~~~~~~~~i~A~~~~~------~~~~-~~~~DiiLlaPQv~~~~~~ik~~~~~~~ 75 (105) |-+++.. ++.+ +.+-+++.++++|..+.+....... ++.. ....|.+++.|--.. ........+ T Consensus 11 Igvivp~--~~pf~~~l~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~i~~l~~~~vdgiIl~~~~~~----~~~~~~~~~ 84 (288) T 2qu7_A 11 IAFIVPD--QNPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSK----FQMKREWLK 84 (288) T ss_dssp EEEEESS--CCHHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC----CCCCGGGGG T ss_pred EEEEECC--CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCH----HHHHHHHCC T ss_conf 9999089--9879999999999999985998999979999899999999999669989997473227----899997379 Q ss_pred CCEEEECCH----HHCCCCCCHHHHHHHHHHHC Q ss_conf 977871813----31011579889999999862 Q T0580 76 IQIVATRGM----EYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 76 ipv~~I~~~----~Y~~~~~dg~k~l~~i~~~l 104 (105) +|++.++.. .+.....|..++...+.++| T Consensus 85 iPvV~~~~~~~~~~~~~V~~d~~~~~~~~~~~l 117 (288) T 2qu7_A 85 IPIMTLDRELESTSLPSITVDNEEAAYIATKRV 117 (288) T ss_dssp SCEEEESCCCSSCCCCEEEECHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCCCCEEEECHHHHHHHHHHHH T ss_conf 988984035799999889967288899999877 No 86 >1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} SCOP: c.23.5.3 PDB: 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* 2qx6_A* 2qx8_A* 2qx9_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 2bzs_A* Probab=58.18 E-value=10 Score=18.31 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=26.4 Q ss_pred CCEEEEEECC---CCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 7268998568---6308899999999998449826888 Q T0580 3 ELKVLVLCAG---SGTSAQLANAINEGANLTEVRVIAN 37 (105) Q Consensus 3 ~~kIlL~C~~---G~STs~la~km~~~a~~~~~~~~i~ 37 (105) -||||++.+. +-.|.-|++...+.+++.|.++++. T Consensus 2 ~mKiLiI~ahP~~~S~s~~l~~~~~~~~~~~g~ev~~~ 39 (230) T 1sg0_A 2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVS 39 (230) T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 98799998589985689999999999999679979999 No 87 >3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} Probab=57.68 E-value=10 Score=18.38 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=23.5 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 997268998568630889999999999844982688873 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG 39 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~ 39 (105) .|+|||.++|+|+.| ++ ..+-++.+...++++|.+. T Consensus 6 ~kkmkI~vl~SG~Gs-nl--~aii~~~~~~~~~~eI~~V 41 (215) T 3kcq_A 6 KKELRVGVLISGRGS-NL--EALAKAFSTEESSVVISCV 41 (215) T ss_dssp -CCEEEEEEESSCCH-HH--HHHHHHTCCC-CSEEEEEE T ss_pred CCCCEEEEEEECCCH-HH--HHHHHHHHCCCCCEEEEEE T ss_conf 998789999949877-49--9999997769988399999 No 88 >3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Probab=57.16 E-value=5 Score=20.17 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=24.5 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHH Q ss_conf 9726899856863088999999999984498268887337789 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAH 44 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~ 44 (105) +.-.|++.|.+|..|+..+..+++ .|.++..-..++... T Consensus 54 ~dk~ivvyC~~G~rS~~aa~~L~~----~G~~v~~l~GG~~~W 92 (108) T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQ----LGLNIVDVEGGIQSW 92 (108) T ss_dssp TTSCEEEECSSSHHHHHHHHHHHT----TTCCEEEETTHHHHH T ss_pred CCCCEEEECCCCHHHHHHHHHHHH----CCCCEEEECCHHHHH T ss_conf 588867888998499999999998----599989975979999 No 89 >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Probab=57.11 E-value=9.5 Score=18.54 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=44.9 Q ss_pred EEEEEECCCCCH----HHH-HHHHHHHHHHCCCCEEEEEECHHHHH-HHCCCCCEEEECHHHHHHHH-HHHHHHHHCCCC Q ss_conf 689985686308----899-99999999844982688873377898-73067889998844788899-999987442897 Q T0580 5 KVLVLCAGSGTS----AQL-ANAINEGANLTEVRVIANSGAYGAHY-DIMGVYDLIILAPQVRSYYR-EMKVDAERLGIQ 77 (105) Q Consensus 5 kIlL~C~~G~ST----s~l-a~km~~~a~~~~~~~~i~A~~~~~~~-~~~~~~DiiLlaPQv~~~~~-~ik~~~~~~~ip 77 (105) ||.++|+|. |+ |+. ++.+.++.++.|.++..--.....+. ....++|+++..-|=.+-.+ .+...++..|+| T Consensus 4 ki~vl~GG~-S~E~~iSl~sg~~i~~aL~~~g~~~~~id~~~~~~~~l~~~~~d~v~~~~~G~~~e~~~~~~~le~~~ip 82 (306) T 1iow_A 4 KIAVLLGGT-SAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 (306) T ss_dssp EEEEECCCS-STTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCC T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCE T ss_conf 099993868-7422849999999999998869979998898411888754598799991678854377999999984984 Q ss_pred EEEECCH Q ss_conf 7871813 Q T0580 78 IVATRGM 84 (105) Q Consensus 78 v~~I~~~ 84 (105) ..--++. T Consensus 83 ~~Gs~~~ 89 (306) T 1iow_A 83 YTGSGVM 89 (306) T ss_dssp BSSCCHH T ss_pred EECCCHH T ss_conf 5249999 No 90 >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Probab=56.54 E-value=11 Score=18.15 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.6 Q ss_pred CEEEEEEC--------CCCCHHHHHHHHHHHHHHCCCCEEEEEECHH Q ss_conf 26899856--------8630889999999999844982688873377 Q T0580 4 LKVLVLCA--------GSGTSAQLANAINEGANLTEVRVIANSGAYG 42 (105) Q Consensus 4 ~kIlL~C~--------~G~STs~la~km~~~a~~~~~~~~i~A~~~~ 42 (105) ||||.+|+ ||+ +.++..+-++..++|.++.|-.-.+. T Consensus 1 M~Il~i~~e~~P~~k~GG~--~~vv~~La~aL~~~GheV~VitP~y~ 45 (485) T 2qzs_A 1 MQVLHVCSEMFPLLKTGGL--ADVIGALPAAQIADGVDARVLLPAFP 45 (485) T ss_dssp CEEEEECSCBTTTBCSSHH--HHHHHHHHHHHHHTTCEEEEEEECCH T ss_pred CEEEEEEEEECCCCCCCCH--HHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9899996744063453319--99999999999976996999978985 No 91 >3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} Probab=56.48 E-value=11 Score=18.14 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHH----HCCCCCC Q ss_conf 899999999998449826888733778987306788999884478889999998744289778718133----1011579 Q T0580 17 AQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGME----YIHLTKS 92 (105) Q Consensus 17 s~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~----Y~~~~~d 92 (105) +-+...+++.+.+.|..+.+...............|.+++.|...- .+.++ ...+.++|++.++... +.+...| T Consensus 24 ~~l~~~i~~~~~~~g~~~~~~~~~~~~~~l~~~~vdGlIi~~~~~~-~~~~~-~l~~~~ipvV~~~~~~~~~~~~~V~~D 101 (277) T 3cs3_A 24 GELLEGIKKGLALFDYEMIVCSGKKSHLFIPEKMVDGAIILDWTFP-TKEIE-KFAERGHSIVVLDRTTEHRNIRQVLLD 101 (277) T ss_dssp HHHHHHHHHHHHTTTCEEEEEESTTTTTCCCTTTCSEEEEECTTSC-HHHHH-HHHHTTCEEEESSSCCCSTTEEEEEEC T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCC-HHHHH-HHHHCCCCEEEECCCCCCCCCCEEEEC T ss_conf 9999999999998699899981858899999679998999548799-89999-999749989998677677899889966 Q ss_pred HHHHHHHHHHHC Q ss_conf 889999999862 Q T0580 93 PSKALQFVLEHY 104 (105) Q Consensus 93 g~k~l~~i~~~l 104 (105) -.++...+.+++ T Consensus 102 ~~~~~~~~~~~l 113 (277) T 3cs3_A 102 NRGGATQAIEQF 113 (277) T ss_dssp HHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 389999999999 No 92 >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} Probab=56.15 E-value=11 Score=18.11 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=43.1 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH--CCCCCEEEECHHHH--HHHHHHHHHHHHCCCCEE Q ss_conf 26899856863088999999999984498268887337789873--06788999884478--889999998744289778 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI--MGVYDLIILAPQVR--SYYREMKVDAERLGIQIV 79 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~--~~~~DiiLlaPQv~--~~~~~ik~~~~~~~ipv~ 79 (105) ||||++=.. ..++..+++..+..|..+.+ |.+..+..+. ...+|+|++ |... -....+++.. .++||. T Consensus 1 MkILiVeDd----~~~~~~l~~~L~~~g~~v~~-a~~~~~a~~~~~~~~~Dlill-p~~~G~~l~~~ir~~~--~~~pIi 72 (223) T 2hqr_A 1 MRVLLIEKN----SVLGGEIEKGLNVKGFMADV-TESLEDGEYLMDIRNYDLVMV-SDKNALSFVSRIKEKH--SSIVVL 72 (223) T ss_dssp CCEEEECSC----HHHHHHHHHHHGGGTCCEEE-ESSHHHHHHHHTTSCCSEEEE-CCTTHHHHHHHHHHHC--TTSEEE T ss_pred CEEEEEECC----HHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHCCCCCEEEE-CCCCHHHHHHHHHHCC--CCCEEE T ss_conf 989999389----99999999999987999999-899999999984589999996-8988899999999639--996399 Q ss_pred EECC Q ss_conf 7181 Q T0580 80 ATRG 83 (105) Q Consensus 80 ~I~~ 83 (105) .+.. T Consensus 73 ~lt~ 76 (223) T 2hqr_A 73 VSSD 76 (223) T ss_dssp EEES T ss_pred EECC T ss_conf 8124 No 93 >1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Probab=55.69 E-value=11 Score=18.06 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=42.6 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 72689985686308899999999998449826888733778987306788999884478889999998744289778718 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATR 82 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~ 82 (105) .-+|+++++||.-|..|..-+.+...+ +..+++.|+.+.-. +-|.-....+-++..|..+|+|..+.. T Consensus 13 ~~~i~va~SGG~DS~~ll~~l~~~~~~-~~~~~~~~~hv~h~-----------lr~~s~~~~~~v~~~~~~~~i~~~~~~ 80 (433) T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTE-NPGVALRAIHVHHG-----------LSANADAWVTHCENVCQQWQVPLVVER 80 (433) T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTT-STTCEEEEEEECCS-----------CCSSHHHHHHHHHHHHHHTTCCEEEEC T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHH-CCCCCEEEEEEECC-----------CCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 983999982819999999999998975-89981999998298-----------895559999999999997499789999 Q ss_pred C Q ss_conf 1 Q T0580 83 G 83 (105) Q Consensus 83 ~ 83 (105) - T Consensus 81 ~ 81 (433) T 1ni5_A 81 V 81 (433) T ss_dssp C T ss_pred E T ss_conf 9 No 94 >3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Probab=55.55 E-value=12 Score=18.05 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=60.5 Q ss_pred EEEEEECCCCCH-------HHHHHHHHHHHHHCCCCEEEEEECHHH-----HHH-H-CCCCCEEEECHHHHHHHHHHHHH Q ss_conf 689985686308-------899999999998449826888733778-----987-3-06788999884478889999998 Q T0580 5 KVLVLCAGSGTS-------AQLANAINEGANLTEVRVIANSGAYGA-----HYD-I-MGVYDLIILAPQVRSYYREMKVD 70 (105) Q Consensus 5 kIlL~C~~G~ST-------s~la~km~~~a~~~~~~~~i~A~~~~~-----~~~-~-~~~~DiiLlaPQv~~~~~~ik~~ 70 (105) -|-++...+-++ +-+.+-+.++++++|.++.+....... .-+ . ....|.+++.|.... +..-+. T Consensus 10 ~Igviip~~~~~~~~npf~~~~~~~i~~~~~~~gy~~~l~~~~~~~~~~~~~~~~l~~~~vdgiIv~~~~~~--~~~~~~ 87 (292) T 3k4h_A 10 TLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--DRIIQY 87 (292) T ss_dssp EEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--CHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC--CHHHHH T ss_conf 799997677656444889999999999999985999999838998899999999986378665765302343--123334 Q ss_pred HHHCCCCEEEECCHH-----HCCCCCCHHHHHHHHHHHC Q ss_conf 744289778718133-----1011579889999999862 Q T0580 71 AERLGIQIVATRGME-----YIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 71 ~~~~~ipv~~I~~~~-----Y~~~~~dg~k~l~~i~~~l 104 (105) ..+.++|++.++... +.+...|.......+.++| T Consensus 88 l~~~~~pvV~~~~~~~~~~~~~~V~~d~~~~~~~a~~~L 126 (292) T 3k4h_A 88 LHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYL 126 (292) T ss_dssp HHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHH T ss_pred HHHCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHH T ss_conf 553253223346554446551120220368888877777 No 95 >2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli} Probab=55.53 E-value=12 Score=18.05 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=40.7 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH----------------------------H-HHHCCCCCEE Q ss_conf 2689985686308899999999998449826888733778----------------------------9-8730678899 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA----------------------------H-YDIMGVYDLI 54 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~----------------------------~-~~~~~~~Dii 54 (105) +|||.+|.|-.--|-||..+-+..-+ +..|++++.+. + .+...++|+| T Consensus 27 ~~ILFVCtgN~cRSpmAEai~~~~~~---~~~v~SaG~~~~~g~~~~~~a~~vl~~~Gid~s~h~sr~l~~~~~~~~DlI 103 (168) T 2wja_A 27 DSILVICTGNICRSPIGERLLRRLLP---SKKINSAGVGALVDHAADESAIRVAEKNGLCLKGHRGTKFTSALARQYDLL 103 (168) T ss_dssp SEEEEEESSSSSHHHHHHHHHHHHST---TSEEEEEETTCCTTCCCCHHHHHC---CCCCCTTCCCCBCCHHHHTTCSEE T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 82899948957799999999997088---886798898715799898789999998397856553234431004558999 Q ss_pred EECHHHHHHHHHHHHHHHHC Q ss_conf 98844788899999987442 Q T0580 55 ILAPQVRSYYREMKVDAERL 74 (105) Q Consensus 55 LlaPQv~~~~~~ik~~~~~~ 74 (105) |.-=+ ....++.+.+.+. T Consensus 104 l~Md~--~~~~~l~~~~P~~ 121 (168) T 2wja_A 104 LVMEY--SHLEQISRIAPEA 121 (168) T ss_dssp EESSH--HHHHHHHHHCTTT T ss_pred EECCH--HHHHHHHHHCCCC T ss_conf 98387--8999999768865 No 96 >2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* Probab=55.29 E-value=12 Score=18.02 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=47.5 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHH------HHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHH Q ss_conf 899999999998449826888733778------98730-6788999884478889999998744289778718133 Q T0580 17 AQLANAINEGANLTEVRVIANSGAYGA------HYDIM-GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGME 85 (105) Q Consensus 17 s~la~km~~~a~~~~~~~~i~A~~~~~------~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~ 85 (105) +-+.+-+.+++++.|.++.+....... ++... ...|.+++.|--.-...+.-+.+.+.|+|++.++... T Consensus 17 ~~v~~gi~~~a~~~g~~~~~~~~~~d~~~~~~~l~~~~~~~~d~ii~~~~~~~~~~~~i~~~~~~~ip~V~~~~~~ 92 (271) T 2dri_A 17 VSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 92 (271) T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC T ss_conf 9999999999998599899995899999999999999861876443212222231689999986377532356555 No 97 >1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Probab=54.95 E-value=9.8 Score=18.46 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=26.3 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCC-CEEEEEECHHHHH Q ss_conf 9726899856863088999999999984498-2688873377898 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEV-RVIANSGAYGAHY 45 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~-~~~i~A~~~~~~~ 45 (105) +.-+|++.|.+|..|...+..+++. |. ++.+-..++..-. T Consensus 81 ~~~~vv~~C~~G~rs~~aa~~L~~~----G~~~v~~l~GG~~~W~ 121 (129) T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHA----GFTGVKDIVGGYSAWA 121 (129) T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH----HCCSEEEEECCHHHHH T ss_pred CCCEEEEECCCCCHHHHHHHHHHHC----CCCCEEECCCHHHHHH T ss_conf 8877999838755179999999975----9986798309399999 No 98 >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Probab=54.70 E-value=12 Score=17.97 Aligned_cols=92 Identities=11% Similarity=0.187 Sum_probs=53.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHH-------------------HHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEECHHH Q ss_conf 97268998568630889999999-------------------999844982688873377898730--678899988447 Q T0580 2 KELKVLVLCAGSGTSAQLANAIN-------------------EGANLTEVRVIANSGAYGAHYDIM--GVYDLIILAPQV 60 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~-------------------~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLlaPQv 60 (105) +++|+-++=.|.++.. .+..++ +.+++.+++ ..+.++++.+ .+.|+|+++.-. T Consensus 4 ~kir~giIG~G~i~~~-h~~~l~~~~~~~lvav~d~~~~~a~~~a~~~~~~-----~~~~~~~~ll~~~~~D~V~I~tp~ 77 (330) T 3e9m_A 4 DKIRYGIMSTAQIVPR-FVAGLRESAQAEVRGIASRRLENAQKMAKELAIP-----VAYGSYEELCKDETIDIIYIPTYN 77 (330) T ss_dssp CCEEEEECSCCTTHHH-HHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCC-----CCBSSHHHHHHCTTCSEEEECCCG T ss_pred CCCEEEEECCHHHHHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCC-----EEECCHHHHHHCCCCCCCCCCCCH T ss_conf 7848999988299999-9999973899189999889999999999984998-----254989999717775511133210 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 888999999874428977871813310115798899999998 Q T0580 61 RSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 61 ~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) ..+.+-+++.. +.|++|.+=-|.....- +.+++++.+.+ T Consensus 78 ~~h~~~a~~al-~~gk~vl~EKPla~~~~--ea~~l~~~~~~ 116 (330) T 3e9m_A 78 QGHYSAAKLAL-SQGKPVLLEKPFTLNAA--EAEELFAIAQE 116 (330) T ss_dssp GGHHHHHHHHH-HTTCCEEECSSCCSSHH--HHHHHHHHHHH T ss_pred HHHHHHHHHHC-CCCHHHHCCCCCCCCCC--CCCCCCCCCCC T ss_conf 11102113322-43312220345432211--01222112222 No 99 >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Probab=54.58 E-value=12 Score=17.95 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=60.9 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHCCCCCEEEEC---------HHHHHHHHHHHHH Q ss_conf 2689985686-3088999999999984498268887337---7898730678899988---------4478889999998 Q T0580 4 LKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAY---GAHYDIMGVYDLIILA---------PQVRSYYREMKVD 70 (105) Q Consensus 4 ~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~---~~~~~~~~~~DiiLla---------PQv~~~~~~ik~~ 70 (105) -+++++..+. ..|--++..+.+.+...++++++.-.+. .+..+.+.++|.+++| |+++..++.++.. T Consensus 253 ~~~~i~y~S~~GnT~~~a~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ii~gspt~~~~~~~~~~~~l~~l~~~ 332 (402) T 1e5d_A 253 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGL 332 (402) T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHT T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHCC T ss_conf 74389985565878999999987751369459999862334302255675377389944775764049999999996513 Q ss_pred HHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHC Q ss_conf 7442897787181331011579889999999862 Q T0580 71 AERLGIQIVATRGMEYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 71 ~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~~l 104 (105) ...++|++++-. |++ ++ ++++.+.+.+ T Consensus 333 -~~~~K~~~vf~s--~g~---~~-~a~~~l~~~l 359 (402) T 1e5d_A 333 -RPQNKIGGAFGS--FGW---SG-ESTKVLAEWL 359 (402) T ss_dssp -CCCSCEEEEEEE--ESS---SC-HHHHHHHHHH T ss_pred -CCCCCEEEEEEC--CCC---CC-HHHHHHHHHH T ss_conf -558998999990--388---74-8999999999 No 100 >3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, structural genomics; HET: PGE; 1.76A {Clostridium difficile 630} Probab=54.10 E-value=12 Score=17.91 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=22.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCC Q ss_conf 689985686308899999999998449826888733778987306 Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMG 49 (105) Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~ 49 (105) .|+.||.+|..|+..+..+++ .|.++.+-..++.+.+.++- T Consensus 92 ~iv~~~~~g~rS~~a~~~L~~----~G~~v~~l~GG~~awk~~~~ 132 (134) T 3g5j_A 92 IVIYCARGGMRSGSIVNLLSS----LGVNVYQLEGGYKAYRNFVL 132 (134) T ss_dssp EEEECSSSSHHHHHHHHHHHH----TTCCCEEETTHHHHHHHHHT T ss_pred EEEEECCCCCHHHHHHHHHHH----CCCCEEEECCHHHHHHHHHH T ss_conf 599978987379999999998----49988896482999999875 No 101 >1xww_A Low molecular weight phosphotyrosine protein phosphatase; hydrolase; 1.63A {Homo sapiens} PDB: 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A 5pnt_A* Probab=53.42 E-value=12 Score=17.84 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=45.1 Q ss_pred CCEEEEEECCCCCHHHHHHHH-HHHHHHCCCC--EEEEEECHHH--------------H---------------HHHCCC Q ss_conf 726899856863088999999-9999844982--6888733778--------------9---------------873067 Q T0580 3 ELKVLVLCAGSGTSAQLANAI-NEGANLTEVR--VIANSGAYGA--------------H---------------YDIMGV 50 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km-~~~a~~~~~~--~~i~A~~~~~--------------~---------------~~~~~~ 50 (105) .-|||.+|.|-.--|-||..+ +..+.++|+. +.+.+++... . .+...+ T Consensus 5 ~k~ILFVCtgN~cRSpmAEal~~~~~~~~~l~~~~~v~SaG~~~~~~g~~~~~~~~~~l~~~g~~~~h~~~~~~~~~~~~ 84 (157) T 1xww_A 5 TKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRAVSCLRNHGIHTAHKARQITKEDFAT 84 (157) T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCCCCCCCBCCHHHHHH T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHCCHHHHHC T ss_conf 88699994983648999999999989876998645897034433224775788999999966742010010221987303 Q ss_pred CCEEEECHHHHHHHHHHHHHHH Q ss_conf 8899988447888999999874 Q T0580 51 YDLIILAPQVRSYYREMKVDAE 72 (105) Q Consensus 51 ~DiiLlaPQv~~~~~~ik~~~~ 72 (105) +|+|+.-= ......+...+. T Consensus 85 ~DlIl~M~--~~~~~~l~~~~p 104 (157) T 1xww_A 85 FDYILCMD--ESNLRDLNRKSN 104 (157) T ss_dssp CSEEEESS--HHHHHHHHHHHH T ss_pred CCHHHHHH--HHHHHHHHHHCC T ss_conf 11656526--767999998668 No 102 >3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Probab=52.85 E-value=13 Score=17.79 Aligned_cols=79 Identities=10% Similarity=0.025 Sum_probs=53.9 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC----HHHHHH----HCCCCCEEEECHHHHHHHHHHHHHHHHCC Q ss_conf 2689985686308899999999998449826888733----778987----30678899988447888999999874428 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA----YGAHYD----IMGVYDLIILAPQVRSYYREMKVDAERLG 75 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~----~~~~~~----~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ 75 (105) =|+++++..+.-- ...+++.+..++.++++.....+ ..+... ...++|+|+ |=-=..-.+-.|-.+...+ T Consensus 35 ~k~livtd~~~~~-~~~~~v~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI-aiGGGsv~D~aK~~A~~~~ 112 (354) T 3ce9_A 35 KRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTNAFKIPAEVDALI-GIGGGKAIDAVKYMAFLRK 112 (354) T ss_dssp SEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHHHTTSCTTCCEEE-EEESHHHHHHHHHHHHHHT T ss_pred CEEEEEECCCHHH-HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEE-EECCCCCCCCCHHHHHCCC T ss_conf 9599998977889-9999999999877998999847999998999999998642688899-9579733335304544157 Q ss_pred CCEEEECCH Q ss_conf 977871813 Q T0580 76 IQIVATRGM 84 (105) Q Consensus 76 ipv~~I~~~ 84 (105) +|+..||.. T Consensus 113 ~p~i~vPTt 121 (354) T 3ce9_A 113 LPFISVPTS 121 (354) T ss_dssp CCEEEEESC T ss_pred CCEEEEECC T ss_conf 878998067 No 103 >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Probab=52.71 E-value=13 Score=17.77 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=43.7 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC--HHHHHHHHH--HHHHHHHCCCCE Q ss_conf 7268998568630889999999999844982688873377898730678899988--447888999--999874428977 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA--PQVRSYYRE--MKVDAERLGIQI 78 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla--PQv~~~~~~--ik~~~~~~~ipv 78 (105) +-+|+++--|+--|.+++.+++ +.|+..++..+.....+-...++|-|+|+ |.--+..+. +.+..-+.++|+ T Consensus 24 ~~~I~vlDfG~q~~~lI~R~lr----elgv~~ei~p~~~~~e~i~~~~~dGiIlSGGP~s~~~~~~~~~~~~~~~~~~Pi 99 (218) T 2vpi_A 24 EGAVVILDAGAQYGKVIDRRVR----ELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPV 99 (218) T ss_dssp TTCEEEEECSTTTTHHHHHHHH----HTTCCEEEECTTCCHHHHHHHTCSEEEEEC---------CCCCCGGGGTSSCCE T ss_pred CCCEEEEECCCHHHHHHHHHHH----HCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCE T ss_conf 5989999889718789999998----769879999597999999747999999899999856577635439999659988 Q ss_pred EEE Q ss_conf 871 Q T0580 79 VAT 81 (105) Q Consensus 79 ~~I 81 (105) .-| T Consensus 100 LGI 102 (218) T 2vpi_A 100 LGI 102 (218) T ss_dssp EEE T ss_pred EEE T ss_conf 998 No 104 >1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Probab=52.55 E-value=11 Score=18.15 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=13.0 Q ss_pred CEEEEEECCCCCHHHHHHHHHH Q ss_conf 2689985686308899999999 Q T0580 4 LKVLVLCAGSGTSAQLANAINE 25 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~ 25 (105) -+|++.|.+|..|...+..+++ T Consensus 83 ~~ivvyC~~G~rS~~aa~~L~~ 104 (137) T 1qxn_A 83 KPVVVFCKTAARAALAGKTLRE 104 (137) T ss_dssp SCEEEECCSSSCHHHHHHHHHH T ss_pred CCEEEECCCCCCHHHHHHHHHH T ss_conf 6545467999759999999998 No 105 >3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Probab=52.34 E-value=7.6 Score=19.12 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=16.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH Q ss_conf 972689985686308899999999 Q T0580 2 KELKVLVLCAGSGTSAQLANAINE 25 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~ 25 (105) +...|++.|.+|..|...+..+++ T Consensus 51 ~~~~ivv~c~~g~rs~~aa~~L~~ 74 (106) T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRS 74 (106) T ss_dssp TTSCEEEECSSHHHHHHHHHHHHH T ss_pred CCCEECCCCCCCHHHHHHHHHHHH T ss_conf 332010256642279999999997 No 106 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Probab=51.69 E-value=13 Score=17.68 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=51.1 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHH-------------------HHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEECHH Q ss_conf 997268998568630889999999-------------------999844982688873377898730--67889998844 Q T0580 1 SKELKVLVLCAGSGTSAQLANAIN-------------------EGANLTEVRVIANSGAYGAHYDIM--GVYDLIILAPQ 59 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~-------------------~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLlaPQ 59 (105) +++|||-++=.|+++.. .+..++ +.+++.+++-...+ ++++++.+ .+.|+|.++-- T Consensus 4 ~~~irvgiIG~G~~~~~-h~~~l~~~~~~elvav~d~~~~~a~~~a~~~~~~~~~~~--y~~~~ell~~~~iD~V~I~tp 80 (362) T 1ydw_A 4 ETQIRIGVMGCADIARK-VSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKI--HGSYESLLEDPEIDALYVPLP 80 (362) T ss_dssp --CEEEEEESCCTTHHH-HHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEE--ESSHHHHHHCTTCCEEEECCC T ss_pred CCCCEEEEECCCHHHHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEE--CCCHHHHHCCCCCCEEEEECC T ss_conf 99408999948599999-999998589988999986999999999998499843553--388999955999888997123 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHH Q ss_conf 788899999987442897787181331011579889999999 Q T0580 60 VRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVL 101 (105) Q Consensus 60 v~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~ 101 (105) ...+++.+++.. +.|++|.+=.|.....- +..++++.+. T Consensus 81 ~~~H~~~~~~al-~~gk~V~~EKPla~~~~--e~~~l~~~a~ 119 (362) T 1ydw_A 81 TSLHVEWAIKAA-EKGKHILLEKPVAMNVT--EFDKIVDACE 119 (362) T ss_dssp GGGHHHHHHHHH-TTTCEEEECSSCSSSHH--HHHHHHHHHH T ss_pred CCCCCCCCCCCC-CCCHHEECCCCCCCHHH--HHHHHHHHHH T ss_conf 344443222234-43300000334210036--7788998763 No 107 >1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Probab=51.62 E-value=9.7 Score=18.47 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=21.1 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 7268998568630889999999999844982 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVR 33 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~ 33 (105) .-+|++.|.+|..|...+..+++. |.+ T Consensus 53 ~~~ivv~C~~g~rs~~aa~~L~~~----G~~ 79 (94) T 1wv9_A 53 RRPLLLVCEKGLLSQVAALYLEAE----GYE 79 (94) T ss_dssp SSCEEEECSSSHHHHHHHHHHHHH----TCC T ss_pred CEEEEEEECCCCCHHHHHHHHHHC----CCC T ss_conf 217999956764099999999987----993 No 108 >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Probab=50.49 E-value=14 Score=17.57 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=28.5 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9726899856863088999999999984498268887 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS 38 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A 38 (105) +.=+|++.|+||.-|..|+.-+.+.....+.++.+-. T Consensus 17 ~~~~i~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~ 53 (464) T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAH 53 (464) T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEE T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 7398999982719999999999998897399199999 No 109 >1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2; structural genomics, protein structure initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6 Probab=50.40 E-value=14 Score=17.56 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=21.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 689985686308899999999998449826888 Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIAN 37 (105) Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~ 37 (105) |-++++++|..++- ....+.+.+.++++.-. T Consensus 37 rPviivG~g~~~~~--~e~~~~~~~~~ipv~~T 67 (174) T 1ytl_A 37 RPLLIVGPDMTDEM--FERVKKFVEKDITVVAT 67 (174) T ss_dssp SEEEEECSCCCHHH--HHHHHHHHTSSSEEEEE T ss_pred CCEEEECCCHHHHH--HHHHHHHHHCCCCEEEC T ss_conf 95899697531659--99999998639988971 No 110 >2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudomonas palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris CGA009} Probab=49.90 E-value=12 Score=17.95 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=12.1 Q ss_pred CCEEEEEECCCCCHHHHHHHHHH Q ss_conf 72689985686308899999999 Q T0580 3 ELKVLVLCAGSGTSAQLANAINE 25 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~ 25 (105) .-+|++.|..|..|...+..+++ T Consensus 86 ~~~iv~~c~~g~rs~~aa~~L~~ 108 (139) T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQD 108 (139) T ss_dssp SSEEEEECSSSHHHHHHHHHHHH T ss_pred CCEEEEECCCCHHHHHHHHHHHH T ss_conf 85799988998169999999998 No 111 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Probab=49.89 E-value=14 Score=17.64 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=45.8 Q ss_pred CCCEEE-EEECCCCCHHHHHHHHH---------------HH----HHHCCCC-EEEEEECHHHHHHHCCCCCEEEECHHH Q ss_conf 972689-98568630889999999---------------99----9844982-688873377898730678899988447 Q T0580 2 KELKVL-VLCAGSGTSAQLANAIN---------------EG----ANLTEVR-VIANSGAYGAHYDIMGVYDLIILAPQV 60 (105) Q Consensus 2 k~~kIl-L~C~~G~STs~la~km~---------------~~----a~~~~~~-~~i~A~~~~~~~~~~~~~DiiLlaPQv 60 (105) +-.+|| +.|+.|.+|..|+..+. +. ++..|++ +.+......+.......||+|++.--+ T Consensus 75 ~g~rVLdiG~GsG~~t~~la~~~~~~g~V~~vd~~~~~~~~A~~~~~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 154 (317) T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGV 154 (317) T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCEEEEECCH T ss_conf 95999998788369999999974899789999798999999999999759997699988556599654896489990467 Q ss_pred HHHHHHHHHHHHHCCCCEEEE Q ss_conf 888999999874428977871 Q T0580 61 RSYYREMKVDAERLGIQIVAT 81 (105) Q Consensus 61 ~~~~~~ik~~~~~~~ipv~~I 81 (105) .+.-+.+.....+-|+=|..+ T Consensus 155 ~~~p~~~~~~LkpGG~lv~p~ 175 (317) T 1dl5_A 155 DEVPETWFTQLKEGGRVIVPI 175 (317) T ss_dssp SCCCHHHHHHEEEEEEEEEEB T ss_pred HHHHHHHHHHHCCCCEEEEEE T ss_conf 775899999728895899997 No 112 >3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Probab=49.73 E-value=8.8 Score=18.72 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=20.4 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 972689985686308899999999998449826 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRV 34 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~ 34 (105) +...|++.|..|..|...+..+++ .|.+. T Consensus 55 ~~~~ivv~C~~G~rs~~aa~~L~~----~G~~~ 83 (100) T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQ----NGVNA 83 (100) T ss_dssp TTSEEEEECSSSHHHHHHHHHHHT----TTCEE T ss_pred CCCEEEEECCCCHHHHHHHHHHHH----CCCCE T ss_conf 886299987998699999999998----59987 No 113 >2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Probab=49.46 E-value=12 Score=17.93 Aligned_cols=73 Identities=14% Similarity=0.007 Sum_probs=45.9 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 97268998568630889999999999844982688873377898730678899988447888999999874428977871 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVAT 81 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I 81 (105) +.-||++.-+||.-||..|.-+++ +| ++|.+.-..- .++-+.- -+-.-..-.++.+..|+.+|||..++ T Consensus 16 ~~kkV~v~mSGGVDSsvaa~LL~~----~G--~eV~gv~m~~----~~~~~~~-~~c~~~~d~~da~~va~~LgIp~~v~ 84 (380) T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----QG--YQVEGLFMKN----WEEDDGE-EYCTAAADLADAQAVCDKLGIELHTV 84 (380) T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----TC--CEEEEEEEEC----CCCCSHH-HHHHHHHHHHHHHHHHHHHTCCEEEE T ss_pred CCCEEEEECCCCHHHHHHHHHHHH----CC--CCEEEEEEEC----CCCCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 688899998786999999999987----69--9599999988----6688877-77886789999999999849977997 Q ss_pred CCHH Q ss_conf 8133 Q T0580 82 RGME 85 (105) Q Consensus 82 ~~~~ 85 (105) +..+ T Consensus 85 d~~~ 88 (380) T 2der_A 85 NFAA 88 (380) T ss_dssp ECHH T ss_pred CHHH T ss_conf 8799 No 114 >3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Probab=49.37 E-value=10 Score=18.35 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=25.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCC-CEEEEEECHHHHH Q ss_conf 9726899856863088999999999984498-2688873377898 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEV-RVIANSGAYGAHY 45 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~-~~~i~A~~~~~~~ 45 (105) +...|++.|.+|..|...+..+++ .|. ++.+-..++..-. T Consensus 55 ~~~~ivvyc~~g~rs~~aa~~L~~----~G~~~v~~L~GG~~~W~ 95 (141) T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRS----AGFEHVSELKGGLAAWK 95 (141) T ss_dssp TTSEEEEECSSHHHHHHHHHHHHH----TTCCSEEECTTHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHH----CCCCCEEEECCHHHHHH T ss_conf 998599989998499999999997----49635899249699999 No 115 >2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} Probab=49.27 E-value=15 Score=17.45 Aligned_cols=102 Identities=7% Similarity=0.036 Sum_probs=56.9 Q ss_pred CCCCEEEEEECCCCCHHH---HHHHHHHHHHHCCCCEEEEEEC-----HHH----HHHH-CCCCCEEEECHHHHHHHHHH Q ss_conf 997268998568630889---9999999998449826888733-----778----9873-06788999884478889999 Q T0580 1 SKELKVLVLCAGSGTSAQ---LANAINEGANLTEVRVIANSGA-----YGA----HYDI-MGVYDLIILAPQVRSYYREM 67 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~---la~km~~~a~~~~~~~~i~A~~-----~~~----~~~~-~~~~DiiLlaPQv~~~~~~i 67 (105) |++.++.=+.-.=++.++ |.+.+.+.+++.|..+.+.... ..+ +... ....|.+++.|.-.. .+.+ T Consensus 5 ~~~~~~Igliip~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~e~~~~~i~~l~~~~vdgiIi~~~~~~-~~~~ 83 (290) T 2rgy_A 5 TQQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDL 83 (290) T ss_dssp ---CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHH T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHH T ss_conf 799997999918987989999999999999986998999968898641999999999998389988999667699-8999 Q ss_pred HHHHHHCCCCEEEECCH----HHCCCCCCHHHHHHHHHHHC Q ss_conf 99874428977871813----31011579889999999862 Q T0580 68 KVDAERLGIQIVATRGM----EYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 68 k~~~~~~~ipv~~I~~~----~Y~~~~~dg~k~l~~i~~~l 104 (105) ....+.|+|++.++.. .+-+...|-..+...+.++| T Consensus 84 -~~l~~~~ipvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L 123 (290) T 2rgy_A 84 -DELHRMHPKMVFLNRAFDALPDASFCPDHRRGGELAAATL 123 (290) T ss_dssp -HHHHHHCSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHH T ss_pred -HHHHHCCCCEEEEECCCCCCCCCEEEECHHHHHHHHHHHH T ss_conf -9999639968999415788867689834188899999999 No 116 >2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A Probab=49.23 E-value=4.8 Score=20.26 Aligned_cols=50 Identities=16% Similarity=0.026 Sum_probs=25.8 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH-HHHHCCCCCEEEECHHH Q ss_conf 689985686308899999999998449826888733778-98730678899988447 Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIILAPQV 60 (105) Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~-~~~~~~~~DiiLlaPQv 60 (105) +-+|+|+.|+-.|+.|+|.+ |+-.-+-.-+++. ....-++..++-+|-.+ T Consensus 64 ~GIliCGtG~G~siaANK~~------GIRAa~~~d~~~A~~ar~hNnaNVL~lG~r~ 114 (162) T 2vvp_A 64 LGIVLGGSGNGEQIAANKVP------GARCALAWSVQTAALAREHNNAQLIGIGGRM 114 (162) T ss_dssp EEEEEESSSHHHHHHHHTST------TCCEEECCSHHHHHHHHHTTCCSEEEEEGGG T ss_pred EEEEECCCCHHHHHHHCCCC------CEEEEEECCHHHHHHHHHHCCCEEEEECCCC T ss_conf 79998578788998861559------9899986782999999984687089987001 No 117 >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* Probab=49.20 E-value=15 Score=17.44 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=25.2 Q ss_pred CCCEEEEEEC------CCCCHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 9726899856------86308899999999998449826888733 Q T0580 2 KELKVLVLCA------GSGTSAQLANAINEGANLTEVRVIANSGA 40 (105) Q Consensus 2 k~~kIlL~C~------~G~STs~la~km~~~a~~~~~~~~i~A~~ 40 (105) .+|||+++|- ||+.+. +..+-++..++|.++.|-+.. T Consensus 19 ~~MkI~~v~~~~~~~~GG~~~~--i~~La~~L~~~GheV~vi~~~ 61 (406) T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSH--VLQLAEVLRDAGHEVSVLAPA 61 (406) T ss_dssp --CEEEEECSSCTTSCCHHHHH--HHHHHHHHHHTTCEEEEEESC T ss_pred CCCEEEEECCCCCCCCCHHHHH--HHHHHHHHHHCCCEEEEEECC T ss_conf 9988999899868999889999--999999999779989999428 No 118 >2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A Probab=47.26 E-value=5.4 Score=19.98 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=32.6 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH-HHHHCCCCCEEEECHHHH Q ss_conf 2689985686308899999999998449826888733778-987306788999884478 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIILAPQVR 61 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~-~~~~~~~~DiiLlaPQv~ 61 (105) -+-+|+|+.|.-.|+.|+|.+ |+-.-.-.-+.+. ....-++..++=+|-.+- T Consensus 60 ~~GIliCGtG~G~siaANK~~------GIRAa~~~d~~~A~~ar~HNnaNVL~lGar~~ 112 (149) T 2vvr_A 60 DGGILICGTGVGISIAANKFA------GIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVV 112 (149) T ss_dssp SEEEEEESSSHHHHHHHHTST------TCCEEECSSHHHHHHHHHHHCCCEEEEETTTB T ss_pred CEEEEECCCCCCHHHHHHCCC------CEEEEEECCCHHHHHHHHHCCCCEEEECCCCC T ss_conf 526996489831888874479------87987535928999999975971899872215 No 119 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Probab=47.15 E-value=16 Score=17.25 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=36.1 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE-ECHHHHHHHCCCCCEEEECHHHHH Q ss_conf 9726899856863088999999999984498268887-337789873067889998844788 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS-GAYGAHYDIMGVYDLIILAPQVRS 62 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A-~~~~~~~~~~~~~DiiLlaPQv~~ 62 (105) ..||||++.. .+ ....+..+++|.++++.. .+..++.+.+.++|++++.++... T Consensus 4 ~~mkili~~~--~~-----~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~d~li~~~~~~i 58 (313) T 2ekl_A 4 YTVKALITDP--ID-----EILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKV 58 (313) T ss_dssp CCCEEEECSC--CC-----HHHHHHHHHTTCEEEECTTCCHHHHHHHGGGCSEEEECSSSCB T ss_pred CCEEEEEECC--CC-----HHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC T ss_conf 6318999799--99-----9999999977988998899999999998289819998889987 No 120 >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Probab=47.02 E-value=16 Score=17.24 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=35.6 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 99726899856863088999999999984498268887337789873067889998844788899999987442897787 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVA 80 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~ 80 (105) +.++||.++|+|+.| .+ +.+-++. ..+.+.+|.+.-. .+.- ...+.+.+.|+|+.. T Consensus 10 ~~p~rI~Vl~SG~GS-nl--~aLl~~~-~~~~~~~Iv~Vis---------------n~~~-----~~~~~A~~~gIp~~~ 65 (215) T 3da8_A 10 SAPARLVVLASGTGS-LL--RSLLDAA-VGDYPARVVAVGV---------------DREC-----RAAEIAAEASVPVFT 65 (215) T ss_dssp CSSEEEEEEESSCCH-HH--HHHHHHS-STTCSEEEEEEEE---------------SSCC-----HHHHHHHHTTCCEEE T ss_pred CCCCEEEEEECCCCH-HH--HHHHHHH-CCCCCCEEEEEEE---------------CCCH-----HHHHHHHHCCCCEEE T ss_conf 998889999837815-59--9999963-8799977999995---------------6866-----676653431686467 Q ss_pred ECCHHH Q ss_conf 181331 Q T0580 81 TRGMEY 86 (105) Q Consensus 81 I~~~~Y 86 (105) ++...| T Consensus 66 i~~~~~ 71 (215) T 3da8_A 66 VRLADH 71 (215) T ss_dssp CCGGGS T ss_pred EECCCC T ss_conf 402210 No 121 >1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Probab=46.79 E-value=15 Score=17.39 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=23.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC-EEEEEECHHHHH Q ss_conf 97268998568630889999999999844982-688873377898 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVR-VIANSGAYGAHY 45 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~-~~i~A~~~~~~~ 45 (105) +.-+|++.|.+|..|...+..+++ .|.+ +.+-..++.+.. T Consensus 57 ~~~~iv~~C~~g~rs~~aa~~l~~----~G~~~v~~l~GG~~~W~ 97 (108) T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQ----QGYDVVYSIDGGFEAWQ 97 (108) T ss_dssp TTSCEEEECSSSSHHHHHHHHHHH----HTCSSEEEETTHHHHHH T ss_pred CCCCEEEECCCCHHHHHHHHHHHH----CCCCCEEEECCHHHHHH T ss_conf 778747787997289999999998----59977899319699998 No 122 >3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} Probab=45.91 E-value=16 Score=17.14 Aligned_cols=85 Identities=12% Similarity=-0.007 Sum_probs=52.5 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHH-----H-HHH-CCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH--HH Q ss_conf 8899999999998449826888733778-----9-873-0678899988447888999999874428977871813--31 Q T0580 16 SAQLANAINEGANLTEVRVIANSGAYGA-----H-YDI-MGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM--EY 86 (105) Q Consensus 16 Ts~la~km~~~a~~~~~~~~i~A~~~~~-----~-~~~-~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~--~Y 86 (105) .+-+.+.++++++++|.++.+....... . ... ....|.+++.|.-. +.......+.++|++.++.. .+ T Consensus 23 ~~~l~~gi~~~~~~~g~~l~~~~~~~d~~~~~~~~~~l~~~~~dgiIi~~~~~---~~~~~~l~~~~ipvv~~~~~~~~~ 99 (277) T 3e61_A 23 FTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFNE---NIIENTLTDHHIPFVFIDRINNEH 99 (277) T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGGH---HHHHHHHHHC-CCEEEGGGCC--- T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHHCCCCEEEEECCCCCC T ss_conf 99999999999998499999997899989999999999865985999536421---579999997599889972367999 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 01157988999999986 Q T0580 87 IHLTKSPSKALQFVLEH 103 (105) Q Consensus 87 ~~~~~dg~k~l~~i~~~ 103 (105) .....|-..+-..+.+. T Consensus 100 ~~V~~d~~~~~~~a~~~ 116 (277) T 3e61_A 100 NGISTNHFKGGQLQAEV 116 (277) T ss_dssp ------HHHHHHHHHHH T ss_pred CEEEECHHHHHHHHHHH T ss_conf 97987689999999999 No 123 >2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=45.29 E-value=17 Score=17.08 Aligned_cols=94 Identities=12% Similarity=-0.077 Sum_probs=53.6 Q ss_pred EEEEECCCCCHHH---HHHHHHHHHHHCCCCEEEEEECH-----HHHHH-HC-CCCCEEEECHHHHHHHHHHHHHHHHCC Q ss_conf 8998568630889---99999999984498268887337-----78987-30-678899988447888999999874428 Q T0580 6 VLVLCAGSGTSAQ---LANAINEGANLTEVRVIANSGAY-----GAHYD-IM-GVYDLIILAPQVRSYYREMKVDAERLG 75 (105) Q Consensus 6 IlL~C~~G~STs~---la~km~~~a~~~~~~~~i~A~~~-----~~~~~-~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ 75 (105) |-+++.. +++.+ +.+-+++.+.++|..+.+..... .+..+ .. ..+|-+++.|.-. .+...+...+.+ T Consensus 2 Igvi~p~-~~~~f~~~li~gi~~~a~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~--~~~~~~~~~~~~ 78 (276) T 2h0a_A 2 VSVLLPF-VATEFYRRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDL--TERFEEGRLPTE 78 (276) T ss_dssp EEEEECC-SCCHHHHHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCC--C------CCSCS T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHCC T ss_conf 8999888-8888999999999999998699899997899879999999999856997999965557--889999987449 Q ss_pred CCEEEECCH----HHCCCCCCHHHHHHHHHHHC Q ss_conf 977871813----31011579889999999862 Q T0580 76 IQIVATRGM----EYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 76 ipv~~I~~~----~Y~~~~~dg~k~l~~i~~~l 104 (105) +|++.++.. +|+.. |-.++...+.++| T Consensus 79 iP~V~~d~~~~~~~~V~~--D~~~a~~~a~~~L 109 (276) T 2h0a_A 79 RPVVLVDAQNPRYDSVYL--DNRLGGRLAGAYL 109 (276) T ss_dssp SCEEEESSCCTTSEEEEE--CSHHHHHHHHHHH T ss_pred CCEEEEEECCCCCCEEEE--CHHHHHHHHHHHH T ss_conf 948999414688888995--5799999999999 No 124 >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A* Probab=45.00 E-value=6.8 Score=19.38 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=46.8 Q ss_pred CCCCEEEEEECCC---CCHHHHHHHHHHHHHHCCCCEEEEE-------------E----CHHHHHHHCCCCCEEEEC--- Q ss_conf 9972689985686---3088999999999984498268887-------------3----377898730678899988--- Q T0580 1 SKELKVLVLCAGS---GTSAQLANAINEGANLTEVRVIANS-------------G----AYGAHYDIMGVYDLIILA--- 57 (105) Q Consensus 1 ~k~~kIlL~C~~G---~STs~la~km~~~a~~~~~~~~i~A-------------~----~~~~~~~~~~~~DiiLla--- 57 (105) |++|||+++|++- -.|..+++.+.+.++ .|.++++.- + ...++.+.+.+.|.++++ T Consensus 4 ~~~MKIl~I~GS~R~~S~s~~l~~~~~~~~~-~g~ev~~idl~dlPl~~~d~~~~~~~~~~~~~~~~l~~AD~iI~~sP~ 82 (193) T 1rtt_A 4 SDDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE 82 (193) T ss_dssp ---CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEECCC T ss_conf 8896799998989988889999999998647-998899985445876400120249989999999985128867996641 Q ss_pred ------HHHHHHHHHHHHH--HHHCCCCEEEECCH Q ss_conf ------4478889999998--74428977871813 Q T0580 58 ------PQVRSYYREMKVD--AERLGIQIVATRGM 84 (105) Q Consensus 58 ------PQv~~~~~~ik~~--~~~~~ipv~~I~~~ 84 (105) ++++..++-+-.. ..=.|+|++.+-.. T Consensus 83 Y~~~~~~~lKn~iD~l~~~~~~~~~gK~v~~i~~s 117 (193) T 1rtt_A 83 YNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193) T ss_dssp ETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEC T ss_conf 21365689999999986066752389869999989 No 125 >1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A Probab=44.99 E-value=17 Score=17.05 Aligned_cols=99 Identities=10% Similarity=0.107 Sum_probs=63.0 Q ss_pred CCCEEEEEECCCC-CHHHHHHHHHHHHHHCCCCEEEEEECHHHH-----------------------HHHCCCCCEEEEC Q ss_conf 9726899856863-088999999999984498268887337789-----------------------8730678899988 Q T0580 2 KELKVLVLCAGSG-TSAQLANAINEGANLTEVRVIANSGAYGAH-----------------------YDIMGVYDLIILA 57 (105) Q Consensus 2 k~~kIlL~C~~G~-STs~la~km~~~a~~~~~~~~i~A~~~~~~-----------------------~~~~~~~DiiLla 57 (105) ..-||+|+..-+- .+.-+++++.+..+++|+++.+......+. ....+++|+++.- T Consensus 3 ~~r~i~lv~~~~k~~a~~~a~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~l 82 (307) T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVL 82 (307) T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEE T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 88899999719998999999999999997899899984102104654467203442276421025543444565589997 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCC----HHHHHHHHH Q ss_conf 44788899999987442897787181331011579----889999999 Q T0580 58 PQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKS----PSKALQFVL 101 (105) Q Consensus 58 PQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~d----g~k~l~~i~ 101 (105) =-=.-.+.-++.. ...++||.-|+.-..+|++.- -+.+++.++ T Consensus 83 GGDGT~L~a~~~~-~~~~~Pilgin~G~lGFL~~~~~~~~~~~l~~~~ 129 (307) T 1u0t_A 83 GGDGTFLRAAELA-RNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVV 129 (307) T ss_dssp ECHHHHHHHHHHH-HHHTCCEEEEECSSCCSSCSEEGGGHHHHHHHHH T ss_pred CCCHHHHHHHHHH-CCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHH T ss_conf 5877899999975-0358837985788300521247567899999987 No 126 >1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S, lyase; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Probab=44.93 E-value=17 Score=17.05 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=44.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH--------------------------------HHHHCC Q ss_conf 972689985686308899999999998449826888733778--------------------------------987306 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA--------------------------------HYDIMG 49 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~--------------------------------~~~~~~ 49 (105) ++.||||++.|+.+.--...-++.. + ++.++.+-....+. +-+..+ T Consensus 18 ~~kkIllgvtGsIAayk~~~lvr~L-~-~~~eV~vi~T~~A~~FVt~~tl~~~~~~~~~~d~~~~~~~~~~~~~Hi~la~ 95 (209) T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCF-T-EWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRR 95 (209) T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHH-H-TTSEEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHHCSSTTSCCHHHHHHH T ss_pred CCCEEEEEECCHHHHHHHHHHHHHH-H-CCCEEEEEECHHHHHHCHHHHHHHEEEEEECCCCCCCCCCCCCCCCHHHHHH T ss_conf 9986999982699999999999998-6-2787999985789855404423210013220321345566678533778753 Q ss_pred CCCEEEECHHHHHHHHHHHHH-----------HHHCCCCEEEECCH Q ss_conf 788999884478889999998-----------74428977871813 Q T0580 50 VYDLIILAPQVRSYYREMKVD-----------AERLGIQIVATRGM 84 (105) Q Consensus 50 ~~DiiLlaPQv~~~~~~ik~~-----------~~~~~ipv~~I~~~ 84 (105) ..|+++++|--.....++-.= +.+.+.|+...|.+ T Consensus 96 ~aDlivVaPATANtiaKiA~GiaD~llt~~~~a~~~~kpv~iaPaM 141 (209) T 1mvl_A 96 WADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAM 141 (209) T ss_dssp HCSEEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECC T ss_pred HCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECC T ss_conf 2487887436898999985777797789999987058888994089 No 127 >1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Probab=44.84 E-value=17 Score=17.04 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=22.5 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 268998568630889999999999844982688873 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG 39 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~ 39 (105) |||.++|+|+.| + .+++-++.+...++.++.+. T Consensus 1 Mki~il~SG~Gs-n--l~~ll~a~~~~~l~~~I~~V 33 (212) T 1jkx_A 1 MNIVVLISGNGS-N--LQAIIDACKTNKIKGTVRAV 33 (212) T ss_dssp CEEEEEESSCCH-H--HHHHHHHHHTTSSSSEEEEE T ss_pred CEEEEEEECCCH-H--HHHHHHHHHCCCCCCEEEEE T ss_conf 979999826847-8--99999988709999889999 No 128 >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} Probab=44.52 E-value=17 Score=17.01 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=54.5 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-----------------CHHHHHHHC--CCCCEEEECHHHH Q ss_conf 997268998568630889999999999844982688873-----------------377898730--6788999884478 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG-----------------AYGAHYDIM--GVYDLIILAPQVR 61 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~-----------------~~~~~~~~~--~~~DiiLlaPQv~ 61 (105) .|++||.++=.|+++.. .+..+++ ..+ +++.|. .+.++++.+ .+.|+|.++---. T Consensus 3 mkk~~v~iIG~G~~g~~-h~~~~~~---~~~--~~i~av~d~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~V~I~tp~~ 76 (359) T 3e18_A 3 LKKYQLVIVGYGGMGSY-HVTLASA---ADN--LEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPND 76 (359) T ss_dssp CCCEEEEEECCSHHHHH-HHHHHHT---STT--EEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGG T ss_pred CCCCCEEEECCCHHHHH-HHHHHHH---CCC--CEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEECCCCH T ss_conf 88782999936899999-9999984---899--58999987999999998871997019999995599989899868805 Q ss_pred HHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 88999999874428977871813310115798899999998 Q T0580 62 SYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 62 ~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) .+.+-++ .+-+.|++|.+=.|.....- +.+++++.+.+ T Consensus 77 ~H~~~~~-~al~~gk~V~~EKP~a~~~~--ea~~l~~~~~~ 114 (359) T 3e18_A 77 SHKELAI-SALEAGKHVVCEKPVTMTSE--DLLAIMDVAKR 114 (359) T ss_dssp GHHHHHH-HHHHTTCEEEEESSCCSSHH--HHHHHHHHHHH T ss_pred HHHHHHH-HHHHCCCEEEEECCCCCCHH--HHHHHHHHHHH T ss_conf 5335678-88864983999668653177--75557899864 No 129 >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Probab=44.28 E-value=17 Score=16.99 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=53.5 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 268998568630889999999999844982688873377898730--678899988447888999999874428977871 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILAPQVRSYYREMKVDAERLGIQIVAT 81 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I 81 (105) ..|.=+|.-- ..+.++.+++.+++- .+.++++.+ .+.|+|.++-.-..+.+-+++.. +.|++|.+= T Consensus 25 ~~~~~v~d~~------~~~~~~~~~~~~~~~-----~~~~~~e~l~~~~~D~V~I~tp~~~H~~~~~~~l-~~g~~v~~E 92 (332) T 2glx_A 25 GEVVSMMSTS------AERGAAYATENGIGK-----SVTSVEELVGDPDVDAVYVSTTNELHREQTLAAI-RAGKHVLCE 92 (332) T ss_dssp CEEEEEECSC------HHHHHHHHHHTTCSC-----CBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH-HTTCEEEEC T ss_pred CEEEEEECCC------HHHHHHHHHHCCCCC-----EECCHHHHHCCCCCCEEEECCCCHHHHHHHHHHH-HCCCCCCCC T ss_conf 7899998599------999999999809994-----0189999956999999999588446599999999-759973124 Q ss_pred CCHHHCCCCCCHHHHHHHHHH Q ss_conf 813310115798899999998 Q T0580 82 RGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 82 ~~~~Y~~~~~dg~k~l~~i~~ 102 (105) .|.....- +.+++++.+.+ T Consensus 93 KP~a~~~~--e~~~l~~~~~~ 111 (332) T 2glx_A 93 KPLAMTLE--DAREMVVAARE 111 (332) T ss_dssp SSSCSSHH--HHHHHHHHHHH T ss_pred CCCCHHHH--HHHHHHHHHHH T ss_conf 77305689--99999888875 No 130 >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Probab=44.14 E-value=18 Score=16.98 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=47.7 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH-CCCCCEEEECHHHHH-----HHHHHHHHHHHC Q ss_conf 99726899856863088999999999984498268887337789873-067889998844788-----899999987442 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI-MGVYDLIILAPQVRS-----YYREMKVDAERL 74 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~-~~~~DiiLlaPQv~~-----~~~~ik~~~~~~ 74 (105) +++.|||++=..-. +..-+++..+..|..+..-..+...+... ...+|+|++--++-- ....++...... T Consensus 5 ~~~~kILiVDDd~~----~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~pDlillD~~mp~~dG~el~~~ir~~~~~~ 80 (154) T 3gt7_A 5 NRAGEILIVEDSPT----QAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLR 80 (154) T ss_dssp --CCEEEEECSCHH----HHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTT T ss_pred CCCCCEEEEECCHH----HHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC T ss_conf 99990999989999----99999999998799999807727787642265543467611447887789999998552356 Q ss_pred CCCEEEECCH Q ss_conf 8977871813 Q T0580 75 GIQIVATRGM 84 (105) Q Consensus 75 ~ipv~~I~~~ 84 (105) .+||..+... T Consensus 81 ~~PiI~lT~~ 90 (154) T 3gt7_A 81 TIPVILLTIL 90 (154) T ss_dssp TSCEEEEECC T ss_pred CCEEEEEECC T ss_conf 7708996068 No 131 >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Probab=43.86 E-value=18 Score=16.95 Aligned_cols=98 Identities=9% Similarity=0.057 Sum_probs=51.1 Q ss_pred CCCCEEEEEECCCCCHHHH----------------------HHHHHHHHHHCCCCEEEEEECHHHHH-HH---CCCCCEE Q ss_conf 9972689985686308899----------------------99999999844982688873377898-73---0678899 Q T0580 1 SKELKVLVLCAGSGTSAQL----------------------ANAINEGANLTEVRVIANSGAYGAHY-DI---MGVYDLI 54 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~l----------------------a~km~~~a~~~~~~~~i~A~~~~~~~-~~---~~~~Dii 54 (105) +|++||-++=.|+++.-.- ..+.++.+++.|++-.-...++.+.- +. -.++|+| T Consensus 10 ~~~irvgiIG~G~~~~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~a~~~gi~~~~~~~d~~~ll~~e~~~~~~iD~V 89 (398) T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAV 89 (398) T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEE T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCEEEE T ss_conf 99618999937875765699999863479976999996899999999999868895401389999999875168981799 Q ss_pred EECHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHH Q ss_conf 98844788899999987442897787181331011579889999999 Q T0580 55 ILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVL 101 (105) Q Consensus 55 LlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~ 101 (105) .++=.-..+.+-+ ..+.+.|++|.+=-|..-..- +.+++++.+. T Consensus 90 ~I~tp~~~H~~~~-~~al~aGkhVl~EKPla~~~~--ea~~l~~~a~ 133 (398) T 3dty_A 90 SIATPNGTHYSIT-KAALEAGLHVVCEKPLCFTVE--QAENLRELSH 133 (398) T ss_dssp EEESCGGGHHHHH-HHHHHTTCEEEECSCSCSCHH--HHHHHHHHHH T ss_pred EECCCHHHHHHHH-HHHHHCCCEEEECCCCCHHHH--HHHHHHHHHH T ss_conf 9899858989999-999847996998568402478--8999999886 No 132 >1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Probab=43.82 E-value=18 Score=16.95 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=36.3 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC Q ss_conf 2689985686-30889999999999844982688873377898730678899988 Q T0580 4 LKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA 57 (105) Q Consensus 4 ~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla 57 (105) -||+++.++- .+|.-+|+++.+.+.++|+++++.....-...+ +.+++.+++. T Consensus 10 ~~i~IlygS~tG~ae~~A~~l~~~l~~~g~~~~v~~~~d~~~~~-l~~~~~~i~~ 63 (167) T 1ykg_A 10 PGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQ-IASEKLLIVV 63 (167) T ss_dssp --CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGG-GGGCSEEEEE T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHC-CCCCCCEEEE T ss_conf 95699998883589999999999998769963774245311010-2355533899 No 133 >3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} Probab=43.04 E-value=18 Score=16.88 Aligned_cols=98 Identities=6% Similarity=0.063 Sum_probs=56.0 Q ss_pred EEEEEECCC--CCHHHHHHHHHHHHHHCCCCEEEEEECHHH------HHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCC Q ss_conf 689985686--308899999999998449826888733778------98730-678899988447888999999874428 Q T0580 5 KVLVLCAGS--GTSAQLANAINEGANLTEVRVIANSGAYGA------HYDIM-GVYDLIILAPQVRSYYREMKVDAERLG 75 (105) Q Consensus 5 kIlL~C~~G--~STs~la~km~~~a~~~~~~~~i~A~~~~~------~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ 75 (105) .|-+++-.- --.+-+.+-++++++++|..+.+....... ++... .++|.+++.|--. -+...+...+.+ T Consensus 5 tIgvi~p~~~~~~~~~~~~~i~~~~~~~gy~l~l~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~--~~~~~~~l~~~~ 82 (275) T 3d8u_A 5 SIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEH--SQRTHQLLEASN 82 (275) T ss_dssp EEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCC--CHHHHHHHHHHT T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHCC T ss_conf 999992988776999999999999998699899996899989999999999964998999908989--989999999769 Q ss_pred CCEEEECCHHH----CCCCCCHHHHHHHHHHHC Q ss_conf 97787181331----011579889999999862 Q T0580 76 IQIVATRGMEY----IHLTKSPSKALQFVLEHY 104 (105) Q Consensus 76 ipv~~I~~~~Y----~~~~~dg~k~l~~i~~~l 104 (105) +|++.++.... .....|-..+...+.+++ T Consensus 83 ~pvV~i~~~~~~~~~~~V~~D~~~~~~~~~~~l 115 (275) T 3d8u_A 83 TPVLEIAELSSKASYLNIGVDHFEVGKACTRHL 115 (275) T ss_dssp CCEEEESSSCSSSSSEEECBCHHHHHHHHHHHH T ss_pred CCEEEECCCCCCCCCCEEEECHHHHHHHHHHHH T ss_conf 989998787888888789965899999999999 No 134 >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Probab=43.00 E-value=18 Score=16.87 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=45.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH-CCCCCEEEECHHHH--HHHHHHHHHHHHCCCCE Q ss_conf 9726899856863088999999999984498268887337789873-06788999884478--88999999874428977 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI-MGVYDLIILAPQVR--SYYREMKVDAERLGIQI 78 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~-~~~~DiiLlaPQv~--~~~~~ik~~~~~~~ipv 78 (105) +.||||++=..-.... -+++..++.|..+..-..+...+... ...+|+|++ |... -..+++++.. ..+|+ T Consensus 17 ~~mkILiVEDd~~~~~----~l~~~L~~~G~~V~~a~~g~~Al~~l~~~~~Dlvll-p~~dG~e~l~~lr~~~--~~~pi 89 (137) T 2pln_A 17 GSMRVLLIEKNSVLGG----EIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMV-SDKNALSFVSRIKEKH--SSIVV 89 (137) T ss_dssp TCSEEEEECSCHHHHH----HHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEE-CSTTHHHHHHHHHHHS--TTSEE T ss_pred CCCEEEEEECCHHHHH----HHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEC-CCCCCCHHHHHHHHHC--CCCCE T ss_conf 8888999949999999----999999988999999899999999997489999983-7975307999999844--67875 Q ss_pred EEECCH Q ss_conf 871813 Q T0580 79 VATRGM 84 (105) Q Consensus 79 ~~I~~~ 84 (105) ..+... T Consensus 90 I~lT~~ 95 (137) T 2pln_A 90 LVSSDN 95 (137) T ss_dssp EEEESS T ss_pred EEEECC T ss_conf 999648 No 135 >3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Probab=42.83 E-value=18 Score=16.86 Aligned_cols=83 Identities=6% Similarity=0.033 Sum_probs=47.5 Q ss_pred HHHHHHHHHHCCCCEEEE-----EECHHHHHHHCCCCCEEEECHHHHHHHHH------HHHHHHHCCCCEEEECCHHHCC Q ss_conf 999999998449826888-----73377898730678899988447888999------9998744289778718133101 Q T0580 20 ANAINEGANLTEVRVIAN-----SGAYGAHYDIMGVYDLIILAPQVRSYYRE------MKVDAERLGIQIVATRGMEYIH 88 (105) Q Consensus 20 a~km~~~a~~~~~~~~i~-----A~~~~~~~~~~~~~DiiLlaPQv~~~~~~------ik~~~~~~~ipv~~I~~~~Y~~ 88 (105) ..++.+.+...|+++++. ..+..++-...+++|+|.+|.+=+....+ .........+||.++++..+.+ T Consensus 88 L~~~~~~l~~~g~~~ev~~~~~~G~~~~~I~~~a~~~DLIVmG~~g~~~~~~~l~GS~~~~vl~~a~~PVlvV~~~~~~~ 167 (294) T 3loq_A 88 LPEVAQKIEAAGIKAEVIKPFPAGDPVVEIIKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDMVVN 167 (294) T ss_dssp HHHHHHHHHHTTCEEEECSSCCEECHHHHHHHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCTTTT T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCC T ss_conf 99999999976997599999715998999999854899999898899997547689706766440468669968876542 Q ss_pred C-------CCCH----HHHHHHHHH Q ss_conf 1-------5798----899999998 Q T0580 89 L-------TKSP----SKALQFVLE 102 (105) Q Consensus 89 ~-------~~dg----~k~l~~i~~ 102 (105) . ..|| .++|+.+.+ T Consensus 168 ~~~~~Ilva~D~s~~s~~al~~a~~ 192 (294) T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKF 192 (294) T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 0012138981487889999999999 No 136 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Probab=42.54 E-value=15 Score=17.35 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHCCCCEEEECCHHH Q ss_conf 8899999987442897787181331 Q T0580 62 SYYREMKVDAERLGIQIVATRGMEY 86 (105) Q Consensus 62 ~~~~~ik~~~~~~~ipv~~I~~~~Y 86 (105) |..+.+++.+.++|+++. .||..| T Consensus 259 ~LR~~L~~~~~~~~~~~~-~P~~~~ 282 (330) T 2ivn_A 259 RLREMLRIMTEDRGIKFF-VPPYDL 282 (330) T ss_dssp HHHHHHHHHHHHHTCEEE-CCCHHH T ss_pred HHHHHHHHHHHHCCCEEE-CCCHHH T ss_conf 999999999997599898-688686 No 137 >2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 1zlq_A* 3dp8_A* 3e3k_A* 1uiu_A 1uiv_A Probab=42.44 E-value=19 Score=16.82 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=43.5 Q ss_pred CCEEEEEECCCCCH-HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEEC Q ss_conf 72689985686308-89999999999844982688873377898730--678899988 Q T0580 3 ELKVLVLCAGSGTS-AQLANAINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILA 57 (105) Q Consensus 3 ~~kIlL~C~~G~ST-s~la~km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLla 57 (105) +..+.+.+.++-+. --++..+++..++-|+++++...+...+.... .+||+++.+ T Consensus 339 ~~~i~i~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~d~~~~~ 396 (502) T 2noo_A 339 PLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIXARQRDGRFGMIFHR 396 (502) T ss_dssp ECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHTCCSEEEEE T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCEEEEE T ss_conf 3127874013440379999999999987395799996043779998746765789870 No 138 >2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Helicobacter pylori 26695} Probab=42.31 E-value=16 Score=17.20 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=23.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHH Q ss_conf 9726899856863088999999999984498268887337789 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAH 44 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~ 44 (105) |.-.|++.|.+|..|...+..+++ .|.+...-..++.+. T Consensus 55 k~~~iv~~C~~G~rS~~aa~~L~~----~G~~~v~l~GG~~~w 93 (110) T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHE----LGYTPYYLEGNVYDF 93 (110) T ss_dssp SSSCEEEECSSSHHHHHHHHHHHH----TTCCCEEEESCGGGT T ss_pred CCCCEEEECCCCHHHHHHHHHHHH----CCCCEEEECCHHHHH T ss_conf 798889989998389999999998----599889956849999 No 139 >2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... Probab=41.37 E-value=19 Score=16.72 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=53.1 Q ss_pred HHHHHHHHHHCCCCEEEEEECH----HHHHHHCCCCCEEEECHHHHHH-----HHHHHHHHHHCCCCEEEECCHHHCCCC Q ss_conf 9999999984498268887337----7898730678899988447888-----999999874428977871813310115 Q T0580 20 ANAINEGANLTEVRVIANSGAY----GAHYDIMGVYDLIILAPQVRSY-----YREMKVDAERLGIQIVATRGMEYIHLT 90 (105) Q Consensus 20 a~km~~~a~~~~~~~~i~A~~~----~~~~~~~~~~DiiLlaPQv~~~-----~~~ik~~~~~~~ipv~~I~~~~Y~~~~ 90 (105) +..+-+.+++.+.+...--+++ .++....++..+.++||...-. +..+++.+.+.|+|+. |...+ +.. T Consensus 63 ~~~Ii~ia~~~~~dai~pG~Gflsena~~a~~~~~~gi~~iGp~~~~i~~~gdK~~~k~la~~~gvp~i--P~~~~-~~~ 139 (449) T 2w70_A 63 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCV--PGSDG-PLG 139 (449) T ss_dssp HHHHHHHHHHHTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBC--SBCSS-CCC T ss_pred HHHHHHHHHHCCCCEEECCHHHHHHCHHHHHHHHHCCCCEEECCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCC-CCC T ss_conf 999999998829999961740755466655789975971660589999984775899999998299757--87466-678 Q ss_pred CCHHHHHHHHHH Q ss_conf 798899999998 Q T0580 91 KSPSKALQFVLE 102 (105) Q Consensus 91 ~dg~k~l~~i~~ 102 (105) .+-+.+++++.+ T Consensus 140 ~~~de~~~~a~~ 151 (449) T 2w70_A 140 DDMDKNRAIAKR 151 (449) T ss_dssp SCHHHHHHHHHH T ss_pred CCHHHHHHHHHH T ss_conf 829999999875 No 140 >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661} Probab=40.52 E-value=10 Score=18.32 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=45.2 Q ss_pred CEEE-EEECCCCCHHHHHHHH-------------------HHHHHHCCCC-EEEEEECHHHHHHHCCCCCEEEECHHHHH Q ss_conf 2689-9856863088999999-------------------9999844982-68887337789873067889998844788 Q T0580 4 LKVL-VLCAGSGTSAQLANAI-------------------NEGANLTEVR-VIANSGAYGAHYDIMGVYDLIILAPQVRS 62 (105) Q Consensus 4 ~kIl-L~C~~G~STs~la~km-------------------~~~a~~~~~~-~~i~A~~~~~~~~~~~~~DiiLlaPQv~~ 62 (105) .+|| +-|+.|.+|.+++... ++.+.+.|++ +.+......+.......||+|++...+.. T Consensus 79 ~rVLdiG~GsG~~ta~lA~~~~~~g~V~~ve~~~~~~~~A~~~~~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~ 158 (215) T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPK 158 (215) T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBBSS T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCEEEECCCHHH T ss_conf 99999689809999999998689978999948789999999999987997379998843107876799648999984788 Q ss_pred HHHHHHHHHHHCCCCE Q ss_conf 8999999874428977 Q T0580 63 YYREMKVDAERLGIQI 78 (105) Q Consensus 63 ~~~~ik~~~~~~~ipv 78 (105) ..+.+.+...+-|.=| T Consensus 159 ~p~~l~~~LkpGGrlv 174 (215) T 2yxe_A 159 IPEPLIRQLKDGGKLL 174 (215) T ss_dssp CCHHHHHTEEEEEEEE T ss_pred HHHHHHHHCCCCEEEE T ss_conf 7999998228896999 No 141 >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Probab=40.46 E-value=20 Score=16.64 Aligned_cols=97 Identities=9% Similarity=-0.031 Sum_probs=55.7 Q ss_pred CCCEEEEEECCCCCHHHHHH-------------------HHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEECHHH Q ss_conf 97268998568630889999-------------------999999844982688873377898730--678899988447 Q T0580 2 KELKVLVLCAGSGTSAQLAN-------------------AINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILAPQV 60 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~-------------------km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLlaPQv 60 (105) |++||-++=.|+++...++. +.++.+++.+++-. .+..+.++++.+ .+.|+|.++--- T Consensus 82 kkirigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~i~~~-~~~~~~d~~ell~~~~iD~V~I~tP~ 160 (433) T 1h6d_A 82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPR-KIYDYSNFDKIAKDPKIDAVYIILPN 160 (433) T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGG-GEECSSSGGGGGGCTTCCEEEECSCG T ss_pred CCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC-CCCCCCCHHHHHCCCCCCEEEEECCH T ss_conf 97179999486999999999997298988999987999999999998489955-67555999999559999889991987 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 888999999874428977871813310115798899999998 Q T0580 61 RSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 61 ~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) ..+.+-+.+. -+.|++|.+=-|..-..- +.+++++.+.+ T Consensus 161 ~~H~~~~~~a-l~~GkhV~~EKPla~~~~--e~~~l~~~a~~ 199 (433) T 1h6d_A 161 SLHAEFAIRA-FKAGKHVMCEKPMATSVA--DCQRMIDAAKA 199 (433) T ss_dssp GGHHHHHHHH-HHTTCEEEECSSCCSSHH--HHHHHHHHHHH T ss_pred HHHHHHHHHH-HHCCCCEEECCCCCHHHH--HHHHHHHHHHH T ss_conf 9999999999-987996762588301236--78888899975 No 142 >3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization, X-RAY crystallography; 1.90A {Clostridium thermocellum} PDB: 3hee_A* Probab=40.28 E-value=8 Score=18.96 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=30.4 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH-HHHHCCCCCEEEECHHHH Q ss_conf 2689985686308899999999998449826888733778-987306788999884478 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIILAPQVR 61 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~-~~~~~~~~DiiLlaPQv~ 61 (105) -+-+++|+.|.-.++.|+|.+ |+-.-+-.-+.+. ....-++..++-+|-.+- T Consensus 59 ~~GIliCGtG~G~~iaANK~~------gIRAa~~~d~~~A~~ar~hNnaNvL~lg~r~~ 111 (149) T 3he8_A 59 DRGIVICGTGLGISIAANKVP------GIRAAVCTNSYMARMSREHNDANILALGERVV 111 (149) T ss_dssp SEEEEEESSSHHHHHHHHTST------TCCEEECSSHHHHHHHHHTTCCSEEEEETTTS T ss_pred CEEEEECCCCCHHHHHHHCCC------CCEEECCCCHHHHHHHHHHCCCCEEEECCEEC T ss_conf 358983587730455542489------95543249999999999856971897756213 No 143 >3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} Probab=39.90 E-value=20 Score=16.58 Aligned_cols=83 Identities=19% Similarity=0.078 Sum_probs=55.1 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEEC---HHHHHHHCCCCCEEEE-C------HHHHHHHHHHHHHHH Q ss_conf 2689985686-308899999999998449826888733---7789873067889998-8------447888999999874 Q T0580 4 LKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGA---YGAHYDIMGVYDLIIL-A------PQVRSYYREMKVDAE 72 (105) Q Consensus 4 ~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~---~~~~~~~~~~~DiiLl-a------PQv~~~~~~ik~~~~ 72 (105) |||+++=.+- .+|--+|+.+.+.+.+.|+++.+.-.. ..+......++|.+.+ + |.+...+..+... . T Consensus 1 MkvlIvY~S~tGnTe~~A~~Ia~gl~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~~~-~ 79 (161) T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQPSEAVATALSTIFAA-A 79 (161) T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHH-C T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC-C T ss_conf 989999989980899999999999886799699976354997786310031428998887765568899999999728-8 Q ss_pred HCCCCEEEECCHHHCCC Q ss_conf 42897787181331011 Q T0580 73 RLGIQIVATRGMEYIHL 89 (105) Q Consensus 73 ~~~ipv~~I~~~~Y~~~ 89 (105) ..+.++.+.- -|+|. T Consensus 80 ~~~k~~avFg--s~g~~ 94 (161) T 3hly_A 80 HNKQAIGLFD--SYGGD 94 (161) T ss_dssp CTTSEEEEEC--CCCSS T ss_pred CCCCEEEEEE--CCCCC T ss_conf 8676499998--77888 No 144 >3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* Probab=38.70 E-value=10 Score=18.36 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=46.1 Q ss_pred CEEE-EEECCCCCHHHHHHHH-------------------HHHHHHC-CC-CEEEEEECHHHHHHHCCCCCEEEEC---- Q ss_conf 2689-9856863088999999-------------------9999844-98-2688873377898730678899988---- Q T0580 4 LKVL-VLCAGSGTSAQLANAI-------------------NEGANLT-EV-RVIANSGAYGAHYDIMGVYDLIILA---- 57 (105) Q Consensus 4 ~kIl-L~C~~G~STs~la~km-------------------~~~a~~~-~~-~~~i~A~~~~~~~~~~~~~DiiLla---- 57 (105) ++|| |-|+.|.+|+.+++.+ ++.+.++ |+ ++...+............+|+++.. T Consensus 78 ~~VLdLGaGsG~~~s~lad~Vg~~G~VyavD~s~~~l~~l~~~a~~r~ni~~I~~d~~~p~~~~~~~~~vD~I~~d~~~~ 157 (232) T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQP 157 (232) T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCCT T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCHHCCCCCCEEEEEEEECCCC T ss_conf 99999687088899999997388978999959999999999863424674059987468011377663067888623274 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 447888999999874428977871 Q T0580 58 PQVRSYYREMKVDAERLGIQIVAT 81 (105) Q Consensus 58 PQv~~~~~~ik~~~~~~~ipv~~I 81 (105) +|.+-...++.....+-|.-+.++ T Consensus 158 ~~~~~~l~~~~~~LKpgG~lii~~ 181 (232) T 3id6_C 158 DQTDIAIYNAKFFLKVNGDMLLVI 181 (232) T ss_dssp THHHHHHHHHHHHEEEEEEEEEEE T ss_pred CCHHHHHHHHHHHCCCCCEEEEEE T ss_conf 349999999987523587799999 No 145 >3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} Probab=38.68 E-value=21 Score=16.47 Aligned_cols=99 Identities=7% Similarity=0.029 Sum_probs=61.5 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE--EECHHHHHHHC--CCCCEEEE--C-------HHHHHHHHHHHH Q ss_conf 72689985686308899999999998449826888--73377898730--67889998--8-------447888999999 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIAN--SGAYGAHYDIM--GVYDLIIL--A-------PQVRSYYREMKV 69 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~--A~~~~~~~~~~--~~~DiiLl--a-------PQv~~~~~~ik~ 69 (105) .-+|++.|..|=.-.+=..-+....+..|.++.-- ..|..++-+.+ .++|+|.| + |+++...+.+++ T Consensus 92 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~V~~lG~~~p~e~~~~~~~~~~~d~v~ls~S~~~~~~~~~~~~~i~~l~~ 171 (215) T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE 171 (215) T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 77368985699777899999999999779979978889999999999998198804787424565336989999999998 Q ss_pred HHHHCCCCEEEEC-----------CHHHCCCCCCHHHHHHHHHHH Q ss_conf 8744289778718-----------133101157988999999986 Q T0580 70 DAERLGIQIVATR-----------GMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 70 ~~~~~~ipv~~I~-----------~~~Y~~~~~dg~k~l~~i~~~ 103 (105) .--..++||.+=- +.|+ -..|+..+++.+.+. T Consensus 172 ~~~~~~v~i~vGGa~~~~~~a~~~GAD~--~a~da~~Av~~a~~l 214 (215) T 3ezx_A 172 EKLRDSVKCMFGGAPVSDKWIEEIGADA--TAENAAEAAKVALEV 214 (215) T ss_dssp TTCGGGSEEEEESSSCCHHHHHHHTCCB--CCSSHHHHHHHHHHT T ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCCE--EECCHHHHHHHHHHH T ss_conf 1888899499889028999999839887--807999999999985 No 146 >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Probab=38.34 E-value=18 Score=16.92 Aligned_cols=74 Identities=7% Similarity=0.112 Sum_probs=44.1 Q ss_pred EEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC-HH---------HHHHHHHHHHHHHH Q ss_conf 689985686-30889999999999844982688873377898730678899988-44---------78889999998744 Q T0580 5 KVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA-PQ---------VRSYYREMKVDAER 73 (105) Q Consensus 5 kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla-PQ---------v~~~~~~ik~~~~~ 73 (105) ||.|+.++- .+|.-+|+.+.+.+.+.|+++.+.. ...+. .+.++|.++++ |- .+...+.++..... T Consensus 3 ki~I~ygS~tG~te~~A~~l~~~l~~~g~~v~~~~--~~~~~-~l~~~~~~i~~~sT~g~G~~p~~~~~f~~~l~~~~~~ 79 (147) T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH--GPLLE-DLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPD 79 (147) T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC--CTTSC-SSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCC T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECC--CCCCC-CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 47999989974799999999999997699712023--55312-3655675999967888985867589999999803501 Q ss_pred -CCCCEEEE Q ss_conf -28977871 Q T0580 74 -LGIQIVAT 81 (105) Q Consensus 74 -~~ipv~~I 81 (105) .|+++++. T Consensus 80 l~~~~~avf 88 (147) T 2hna_A 80 LSAVRFGAI 88 (147) T ss_dssp TTEEEEEEE T ss_pred CCCCEEEEE T ss_conf 168748999 No 147 >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} Probab=38.25 E-value=22 Score=16.43 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=48.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH-CCCCCEEEECHHHHH-----HHHHHHHHHHHCC Q ss_conf 9726899856863088999999999984498268887337789873-067889998844788-----8999999874428 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI-MGVYDLIILAPQVRS-----YYREMKVDAERLG 75 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~-~~~~DiiLlaPQv~~-----~~~~ik~~~~~~~ 75 (105) +++|||++-..=....++..-+++ .|.++..-+.+...++.. ...+|+|++-=++-. ....+++.....+ T Consensus 7 ~~~rILiVDDd~~~~~~l~~~L~~----~g~~v~~a~~g~eAl~~~~~~~pdliilD~~mP~~dG~el~~~lr~~~~~~~ 82 (147) T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQ----EGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTAS 82 (147) T ss_dssp -CEEEEEECTTGGGGHHHHHHHHH----HTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTT T ss_pred CCCEEEEEECCHHHHHHHHHHHHH----CCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCC T ss_conf 998899997999999999999998----7999999899999999998279999986368998755899999984756689 Q ss_pred CCEEEECCH Q ss_conf 977871813 Q T0580 76 IQIVATRGM 84 (105) Q Consensus 76 ipv~~I~~~ 84 (105) +||..+... T Consensus 83 iPiI~lT~~ 91 (147) T 2zay_A 83 IPVIALSGR 91 (147) T ss_dssp SCEEEEESS T ss_pred CCEEEEECC T ss_conf 728997368 No 148 >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Probab=37.78 E-value=8 Score=18.98 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=20.2 Q ss_pred HHHHHCCCCCEEEE-------CHHHHHHHHHHHHHHHHCCCCEEEECCHH Q ss_conf 89873067889998-------84478889999998744289778718133 Q T0580 43 AHYDIMGVYDLIIL-------APQVRSYYREMKVDAERLGIQIVATRGME 85 (105) Q Consensus 43 ~~~~~~~~~DiiLl-------aPQv~~~~~~ik~~~~~~~ipv~~I~~~~ 85 (105) +..+...+.|++|+ .|-.++ -..+...|.|+..|++.. T Consensus 160 ~a~~~~~~aDlllvvGTSl~V~pa~~l-----~~~a~~~g~~ii~IN~~~ 204 (235) T 1s5p_A 160 EIYMALSMADIFIAIGTSGHVYPAAGF-----VHEAKLHGAHTVELNLEP 204 (235) T ss_dssp HHHHHHHHCSEEEEESCCTTEETGGGH-----HHHHHHTTCEEEEEESSS T ss_pred HHHHHHHHCCEEEEECCCCCCCCHHHH-----HHHHHHCCCEEEEECCCC T ss_conf 999999748989998679852568799-----999997498499989999 No 149 >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P)binding protein, rossmann fold; HET: NAP; 2.15A {Streptococcus pyogenes m1 gas} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Probab=37.51 E-value=22 Score=16.36 Aligned_cols=55 Identities=27% Similarity=0.460 Sum_probs=31.1 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHH---------------HHHHHCCCCCEEEEC--HHH Q ss_conf 997268998568630889999999999844982688873377---------------898730678899988--447 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYG---------------AHYDIMGVYDLIILA--PQV 60 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~---------------~~~~~~~~~DiiLla--PQv 60 (105) |..|||.++=.|-|.++++-. +. +.+.++.+...... +..+..++.|+|+|+ ||. T Consensus 1 ~~~MkIg~IG~G~mg~ai~~g-l~----~~~~~i~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dvIiLavkP~~ 72 (259) T 2ahr_A 1 SNAMKIGIIGVGKMASAIIKG-LK----QTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQL 72 (259) T ss_dssp --CCEEEEECCSHHHHHHHHH-HT----TSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGG T ss_pred CCCCEEEEECCCHHHHHHHHH-HH----HCCCEEEEECCCHHHHHHHHHHHCCEEECCHHHHHHHCCCEEEECCHHH T ss_conf 998899998565999999999-99----6998699978999999999998099286567888752442465132143 No 150 >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Probab=37.26 E-value=23 Score=16.34 Aligned_cols=74 Identities=8% Similarity=0.082 Sum_probs=45.6 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEE-CHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 2689985686-30889999999999844982688873-377898730678899988447888999999874428977871 Q T0580 4 LKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSG-AYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVAT 81 (105) Q Consensus 4 ~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~-~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I 81 (105) -||.++.+.| |..| |+..+ .+.|.++.+.-. .....++.+.+.|+|+++--+....+-+++......-...++ T Consensus 22 ~kI~IIGG~G~mG~s-la~~l----~~~G~~V~~~d~~~~~~~e~~~~~aDlVilavP~~~~~~vl~~l~~~l~~~~iv~ 96 (298) T 2pv7_A 22 HKIVIVGGYGKLGGL-FARYL----RASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLA 96 (298) T ss_dssp CCEEEETTTSHHHHH-HHHHH----HTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEE T ss_pred CEEEEEECCCHHHHH-HHHHH----HHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 828999388856899-99999----9689948997388133179887598999995789999999999764158981898 Q ss_pred C Q ss_conf 8 Q T0580 82 R 82 (105) Q Consensus 82 ~ 82 (105) | T Consensus 97 D 97 (298) T 2pv7_A 97 D 97 (298) T ss_dssp E T ss_pred E T ss_conf 3 No 151 >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} Probab=37.19 E-value=23 Score=16.33 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=23.5 Q ss_pred CCEEEEEE--C-CCCCHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 72689985--6-8630889999999999844982688873 Q T0580 3 ELKVLVLC--A-GSGTSAQLANAINEGANLTEVRVIANSG 39 (105) Q Consensus 3 ~~kIlL~C--~-~G~STs~la~km~~~a~~~~~~~~i~A~ 39 (105) +|||+++| . ||..+ .+..+-++..++|.++.+-+. T Consensus 15 kmkI~i~~~P~~GG~~~--~~~~La~~L~~~GheV~vi~~ 52 (394) T 2jjm_A 15 KLKIGITCYPSVGGSGV--VGTELGKQLAERGHEIHFITS 52 (394) T ss_dssp CCEEEEECCC--CHHHH--HHHHHHHHHHHTTCEEEEECS T ss_pred CCEEEEECCCCCCCHHH--HHHHHHHHHHHCCCEEEEEEC T ss_conf 65898978999997999--999999999977998999936 No 152 >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Probab=37.10 E-value=23 Score=16.32 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=19.2 Q ss_pred CCCCEEEEEECCCCC---HHHH-HHHHHHHHHHCCCC Q ss_conf 997268998568630---8899-99999999844982 Q T0580 1 SKELKVLVLCAGSGT---SAQL-ANAINEGANLTEVR 33 (105) Q Consensus 1 ~k~~kIlL~C~~G~S---Ts~l-a~km~~~a~~~~~~ 33 (105) .|+|||.++|+|.-+ -|+. +..+-++.++.+.+ T Consensus 8 ~~k~kv~vl~GG~S~E~~vSl~Sg~~v~~aL~~~gy~ 44 (373) T 3lwb_A 8 DRRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFD 44 (373) T ss_dssp TTCEEEEEEEEC-----CHHHHHHHHHHHHSCTTTEE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCE T ss_conf 8987799995889863372999999999988770998 No 153 >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Probab=36.84 E-value=23 Score=16.30 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=35.1 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-----CHHHHHHHC-----CCCCEEE Q ss_conf 268998568630889999999999844982688873-----377898730-----6788999 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG-----AYGAHYDIM-----GVYDLII 55 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~-----~~~~~~~~~-----~~~DiiL 55 (105) -|+|++|+.++..+=..+++++..+..|+++.+... +...+.+.. .+.|+|+ T Consensus 32 k~vlvv~~~~~~~~g~~~~i~~~L~~~gi~~~vf~~v~~~pt~~~v~~~~~~~~~~~~D~Ii 93 (386) T 1rrm_A 32 QKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLI 93 (386) T ss_dssp CEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEE T ss_pred CEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEE T ss_conf 87999989775658279999999987598399987847997999999986555035888799 No 154 >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Probab=36.40 E-value=23 Score=16.26 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=35.2 Q ss_pred CEEEEEECCCCCH--HHHHHHHHHHHHHCCCCEEEEEE-----CHHHHHHH---C--CCCCEEE Q ss_conf 2689985686308--89999999999844982688873-----37789873---0--6788999 Q T0580 4 LKVLVLCAGSGTS--AQLANAINEGANLTEVRVIANSG-----AYGAHYDI---M--GVYDLII 55 (105) Q Consensus 4 ~kIlL~C~~G~ST--s~la~km~~~a~~~~~~~~i~A~-----~~~~~~~~---~--~~~DiiL 55 (105) -|+|++|+.|.+. +=+++++.+..++.|+++.+... +...+++. . .+.|.|+ T Consensus 34 kr~livt~~~~~~~~~~~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~Ii 97 (387) T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIV 97 (387) T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEE T ss_pred CEEEEEECCCHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 8699998986676015699999999997699399980857998999999999987622998899 No 155 >1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; mixed alpha beta, homotrimer, lyase; HET: FPP; 1.60A {Shewanella oneidensis mr-1} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A* Probab=36.40 E-value=20 Score=16.64 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=36.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC--HHHHHHHHHHHHHHHH-CCCCE Q ss_conf 8630889999999999844982688873377898730678899988--4478889999998744-28977 Q T0580 12 GSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA--PQVRSYYREMKVDAER-LGIQI 78 (105) Q Consensus 12 ~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla--PQv~~~~~~ik~~~~~-~~ipv 78 (105) .|.||..|.++..+..++.|.. +.+.|+.+++ |.+.-+.+++++..++ .+++. T Consensus 71 k~~~S~~lL~~~~~~~~~~g~~--------------I~NiD~tIi~e~PKi~p~~~~i~~~ls~lL~i~~ 126 (159) T 1t0a_A 71 KGADSRVLLRHCYALAKAKGFE--------------LGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADV 126 (159) T ss_dssp TTCCHHHHHHHHHHHHHHTTEE--------------EEEEEEEEECSSSCCGGGHHHHHHHHHHHTTCCG T ss_pred CCCCHHHHHHHHHHHHHHCCCE--------------EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 1544999999999999985987--------------7411012225366657899999999999969996 No 156 >1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* Probab=36.26 E-value=21 Score=16.55 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=37.2 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC--HHHHHHHHHHHHHHHH-CCCCE Q ss_conf 8630889999999999844982688873377898730678899988--4478889999998744-28977 Q T0580 12 GSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA--PQVRSYYREMKVDAER-LGIQI 78 (105) Q Consensus 12 ~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla--PQv~~~~~~ik~~~~~-~~ipv 78 (105) .|+||..|.++..+..+++|.. +.+.|+.+++ |.+.-+.+++++..++ .++|. T Consensus 70 k~~~S~~~L~~~~~~~~~~g~~--------------I~NiD~tIi~e~PKi~p~~~~i~~~ls~iL~i~~ 125 (160) T 1gx1_A 70 KGADSRELLREAWRRIQAKGYT--------------LGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHM 125 (160) T ss_dssp TTCCHHHHHHHHHHHHHHTTCE--------------EEEEEEEEECSSSCCGGGHHHHHHHHHHHTTCCG T ss_pred CCCCCHHHHHHHHHHHHHCCCE--------------EEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 9999879999999999971866--------------8888999992578337899999999999969997 No 157 >2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Probab=35.74 E-value=24 Score=16.19 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=47.7 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 72689985686308899999999998449826888733778987306788999884478889999998744289778718 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATR 82 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~ 82 (105) +.||++.=+||.-||.-|--+++. |. +|.+.-..-..+ -+--=.++.. -..++.+..|+..|||..++| T Consensus 9 k~rv~v~mSGGVDSsvaa~lL~~~----G~--~V~gv~m~~w~~----~~~~~~c~~~-~d~~da~~va~~LgIp~~~~d 77 (376) T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQ----GY--DVIGIFMKNWDD----TDENGVCTAT-EDYKDVVAVADQIGIPYYSVN 77 (376) T ss_dssp GSEEEEECCSSHHHHHHHHHHHHT----TC--EEEEEEEECCCC----CC----CHHH-HHHHHHHHHHHHHTCCEEEEE T ss_pred CCEEEEECCCCHHHHHHHHHHHHC----CC--CEEEEEEECCCC----CCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEC T ss_conf 787999926879999999999976----99--579999977767----7767877737-889999999998499789967 Q ss_pred CHHH Q ss_conf 1331 Q T0580 83 GMEY 86 (105) Q Consensus 83 ~~~Y 86 (105) ...- T Consensus 78 ~~~~ 81 (376) T 2hma_A 78 FEKE 81 (376) T ss_dssp CHHH T ss_pred HHHH T ss_conf 3999 No 158 >2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* Probab=35.61 E-value=24 Score=16.18 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=52.0 Q ss_pred CCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHCCCCEEEEE---ECHHHHHHHC----C-CCCEEEECH Q ss_conf 99726899856863--------------088999999999984498268887---3377898730----6-788999884 Q T0580 1 SKELKVLVLCAGSG--------------TSAQLANAINEGANLTEVRVIANS---GAYGAHYDIM----G-VYDLIILAP 58 (105) Q Consensus 1 ~k~~kIlL~C~~G~--------------STs~la~km~~~a~~~~~~~~i~A---~~~~~~~~~~----~-~~DiiLlaP 58 (105) .+.||||++=+-.+ |=.-+.+.+++.+++.+++++++. -.++++-+.+ + ++|-|++-| T Consensus 7 ~~~MkILiinGPNLNlLG~Rep~iYG~~TL~~i~~~l~~~a~~~~l~v~l~~~QSN~EgelId~Iq~a~~~~~dgIIINP 86 (176) T 2c4w_A 7 GSHMKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINP 86 (176) T ss_dssp CCCEEEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEEC T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 89887999858880105887886488469999999999999981896100247777899999999997079822899555 Q ss_pred H----HHHHHHHHHHHHHHCCCCEEEE Q ss_conf 4----7888999999874428977871 Q T0580 59 Q----VRSYYREMKVDAERLGIQIVAT 81 (105) Q Consensus 59 Q----v~~~~~~ik~~~~~~~ipv~~I 81 (105) - .++- +.......++|+.-+ T Consensus 87 gA~THtSiA---lrDAL~~~~~P~iEV 110 (176) T 2c4w_A 87 GAFSHTSIA---IADAIMLAGKPVIEV 110 (176) T ss_dssp GGGGGTCHH---HHHHHHTSSSCEEEE T ss_pred HHHEEEEEE---HHHHHHHCCCCEEEE T ss_conf 363241101---287886339978999 No 159 >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A Probab=35.59 E-value=24 Score=16.18 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=53.2 Q ss_pred CEEE-EEECCCCCHHHHHHHHH-------------------HHHHHCCCCEEEEEECH---HHHHHHCCCCCEEEE---- Q ss_conf 2689-98568630889999999-------------------99984498268887337---789873067889998---- Q T0580 4 LKVL-VLCAGSGTSAQLANAIN-------------------EGANLTEVRVIANSGAY---GAHYDIMGVYDLIIL---- 56 (105) Q Consensus 4 ~kIl-L~C~~G~STs~la~km~-------------------~~a~~~~~~~~i~A~~~---~~~~~~~~~~DiiLl---- 56 (105) .+|| |.|+.|.+|+.+++.+. +.++.++. ++..-... .......+..|++.. T Consensus 75 ~~VLDlG~G~G~~~~~la~~vg~~g~V~avDis~~~l~~~~~~~~~~~n-v~~i~~D~~~~~~~~~~~~~v~~~~~~~~~ 153 (227) T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN-IVPILGDATKPEEYRALVPKVDVIFEDVAQ 153 (227) T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTT-EEEEECCTTCGGGGTTTCCCEEEEEECCCS T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCCCCCCEEEEEEEECC T ss_conf 9999954899868999999839997799994989999999998874898-599984476743121346844799875205 Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHC Q ss_conf 844788899999987442897787181331011579889999999862 Q T0580 57 APQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 57 aPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~~l 104 (105) .+|.+-.++++.....+-|.-+.++.... ...+-+++.+++.+.+.+ T Consensus 154 ~~~~~~~l~~~~~~LkpgG~lvi~~~a~~-~~~~~~~~~v~~~~~~~l 200 (227) T 1g8a_A 154 PTQAKILIDNAEVYLKRGGYGMIAVKSRS-IDVTKEPEQVFREVEREL 200 (227) T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEEEEGGG-TCTTSCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCC-CCCCCCHHHHHHHHHHHH T ss_conf 26689999999984799819999986245-677778889999999998 No 160 >3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} Probab=34.97 E-value=25 Score=16.12 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=50.7 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE------------------CHHHHHHHC--CCCCEEEECHHH Q ss_conf 997268998568630889999999999844982688873------------------377898730--678899988447 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG------------------AYGAHYDIM--GVYDLIILAPQV 60 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~------------------~~~~~~~~~--~~~DiiLlaPQv 60 (105) ++++||.++=.|.+++.. +..+++ .. ++++.|. .+..+++.+ .+.|+|.++--. T Consensus 3 ~~plrvgiIG~G~~~~~~-~~~l~~---~~--~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 76 (354) T 3db2_A 3 YNPVGVAAIGLGRWAYVM-ADAYTK---SE--KLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPN 76 (354) T ss_dssp CCCEEEEEECCSHHHHHH-HHHHTT---CS--SEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCT T ss_pred CCCCEEEEECCHHHHHHH-HHHHHH---CC--CEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEECCH T ss_conf 998789999770999999-999974---89--918999988999999999998399842899999559999999970847 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHH Q ss_conf 88899999987442897787181331011579889999999 Q T0580 61 RSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVL 101 (105) Q Consensus 61 ~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~ 101 (105) ..+.+-+++.. +.|++|.+=-|..-..- +.+++++.+. T Consensus 77 ~~H~~~~~~al-~~GkhV~~EKP~a~~~~--e~~~l~~~a~ 114 (354) T 3db2_A 77 DKHAEVIEQCA-RSGKHIYVEKPISVSLD--HAQRIDQVIK 114 (354) T ss_dssp TSHHHHHHHHH-HTTCEEEEESSSCSSHH--HHHHHHHHHH T ss_pred HHHHHHHHHHH-HCCCCEEEECCCCCCHH--HHHHHHHHHH T ss_conf 86899999999-87990886068769889--9999999999 No 161 >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3 Probab=34.86 E-value=25 Score=16.11 Aligned_cols=100 Identities=17% Similarity=0.102 Sum_probs=51.3 Q ss_pred CEEE-EEECCCCCHHHHHHHH------------------HHHHHHCCCCEEEEEE--CHHHHHHHCCCCCEEEE----CH Q ss_conf 2689-9856863088999999------------------9999844982688873--37789873067889998----84 Q T0580 4 LKVL-VLCAGSGTSAQLANAI------------------NEGANLTEVRVIANSG--AYGAHYDIMGVYDLIIL----AP 58 (105) Q Consensus 4 ~kIl-L~C~~G~STs~la~km------------------~~~a~~~~~~~~i~A~--~~~~~~~~~~~~DiiLl----aP 58 (105) .+|| +-|+.|.+++.|++.. ++.++.++.-..+... ...........+|++.. .+ T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~g~V~gVD~s~~ml~~a~~~a~~~~ni~~i~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 138 (210) T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKN 138 (210) T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECCCSTT T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCHH T ss_conf 99999479888889999975799749999299999999999875379816999405575444566443899862011234 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHC Q ss_conf 4788899999987442897787181331011579889999999862 Q T0580 59 QVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 59 Qv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~~l 104 (105) |..-.+.++.....+-|.-+.++..... ..+.+.+.+.+.+.+.+ T Consensus 139 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~-d~~~~~~~~~~~~~~~l 183 (210) T 1nt2_A 139 QIEILKANAEFFLKEKGEVVIMVKARSI-DSTAEPEEVFKSVLKEM 183 (210) T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEHHHH-CTTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCC-CCCCCHHHHHHHHHHHH T ss_conf 5999999999860038789999994157-78888799999999999 No 162 >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Probab=34.75 E-value=25 Score=16.10 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=20.3 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9972689985686308899999999998449826888 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIAN 37 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~ 37 (105) |..|||++ |++|--.+.+++.+.+ +|.++.+- T Consensus 2 ~~~m~ViI-~G~G~~G~~la~~L~~----~~~~V~vI 33 (140) T 1lss_A 2 SHGMYIII-AGIGRVGYTLAKSLSE----KGHDIVLI 33 (140) T ss_dssp ---CEEEE-ECCSHHHHHHHHHHHH----TTCEEEEE T ss_pred CCCCEEEE-ECCCHHHHHHHHHHHH----CCCCEEEE T ss_conf 98999999-8989999999999997----79967998 No 163 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=34.46 E-value=25 Score=16.07 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=13.9 Q ss_pred CCEEEEEECCCCCHHHHHHHHHH Q ss_conf 72689985686308899999999 Q T0580 3 ELKVLVLCAGSGTSAQLANAINE 25 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~ 25 (105) +||||++=+||-- .-|+.++.+ T Consensus 21 ~mkvLviG~Ggre-hal~~~l~~ 42 (451) T 2yrx_A 21 HMNVLVIGRGGRE-HAIAWKAAQ 42 (451) T ss_dssp SEEEEEEECSHHH-HHHHHHHHT T ss_pred CCEEEEECCCHHH-HHHHHHHHH T ss_conf 9989998978899-999999974 No 164 >2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus influenzae; hypothetical protein, structural genomics, PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1 Probab=34.38 E-value=12 Score=18.05 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=41.1 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-------------CHHHHHHHC-CCCCEEEECHHHHHHHHHHHHH Q ss_conf 68998568630889999999999844982688873-------------377898730-6788999884478889999998 Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG-------------AYGAHYDIM-GVYDLIILAPQVRSYYREMKVD 70 (105) Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~-------------~~~~~~~~~-~~~DiiLlaPQv~~~~~~ik~~ 70 (105) |+++.-.|..-++-+ ++++=..-..+ +.|.+. ++...++.. .++|.+|++-|-| +.++|.. T Consensus 3 k~~i~~~~~~y~~~~-~~~~~~~~~~~--~~~~~~~~~~~~a~~~dg~~~~~~~~~~~~~~dy~~i~~~e~--~~~~k~~ 77 (306) T 2g6t_A 3 KCLIWGVNDEYTLAY-DKLLFEISKGN--LSIEALISKDKYAKYIDGKEVIDKTEISNYEFDYIIIFNKER--YSDIKNE 77 (306) T ss_dssp EEEEECCSHHHHHHH-HHHHHHHHTTS--EEEEEEECSSCSCSBSSSCBEECGGGGGGSCCSEEEECCTTT--HHHHHHH T ss_pred EEEEEECCHHHHHHH-HHHHHHHHHCC--CEEEEEECCCHHHHHCCCCEECCHHHHHHHCCCEEEEECHHH--HHHHHHH T ss_conf 799996066888888-88899997367--369996246266775289452049998650267899907678--9999989 Q ss_pred HHHCCCCEE Q ss_conf 744289778 Q T0580 71 AERLGIQIV 79 (105) Q Consensus 71 ~~~~~ipv~ 79 (105) +-+.|||-- T Consensus 78 ~~~~gi~~~ 86 (306) T 2g6t_A 78 ALELGIPER 86 (306) T ss_dssp HHHTTCCGG T ss_pred HHHCCCCHH T ss_conf 998288733 No 165 >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Probab=34.30 E-value=25 Score=16.06 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=26.5 Q ss_pred CEEEEEEC-------CCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 26899856-------863088999999999984498268887 Q T0580 4 LKVLVLCA-------GSGTSAQLANAINEGANLTEVRVIANS 38 (105) Q Consensus 4 ~kIlL~C~-------~G~STs~la~km~~~a~~~~~~~~i~A 38 (105) ||||.+|. .| .-+.+|..+-++..++|.++.|-+ T Consensus 1 Mkil~i~~e~~P~~~~G-Gl~~vv~~La~aL~~~GH~V~Vi~ 41 (485) T 1rzu_A 1 MNVLSVSSEIYPLIKTG-GLADVVGALPIALEAHGVRTRTLI 41 (485) T ss_dssp CEEEEECSCBTTTBCSS-HHHHHHHHHHHHHHTTTCEEEEEE T ss_pred CEEEEEEEEEECCCCCC-CHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 98999988660611357-799999999999998699699996 No 166 >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Probab=33.80 E-value=26 Score=16.01 Aligned_cols=73 Identities=7% Similarity=-0.011 Sum_probs=41.2 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHH-----HHHHHHHHHHHHHCCCCE Q ss_conf 268998568630889999999999844982688873377898730678899988447-----888999999874428977 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV-----RSYYREMKVDAERLGIQI 78 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv-----~~~~~~ik~~~~~~~ipv 78 (105) |.|+++-.+.-=|..++. +.++.|.+++|-......-+...-++|.+.++|-- ....+ +-+.+.+.++|+ T Consensus 1 mmI~iiD~g~~~t~~I~~----~l~~lg~~~~vvp~~~~~~~~~~~~~~gvilsgg~~~~~~~~~~~-~i~~~~~~~~Pi 75 (189) T 1wl8_A 1 MMIVIMDNGGQYVHRIWR----TLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLENTGNCEK-VLEHYDEFNVPI 75 (189) T ss_dssp CEEEEEECSCTTHHHHHH----HHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCSCTTCCTTHHH-HHHTGGGTCSCE T ss_pred CEEEEEECCCHHHHHHHH----HHHHCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCE T ss_conf 989999798808999999----998679859998599988998653254311235763212454310-000000357437 Q ss_pred EEE Q ss_conf 871 Q T0580 79 VAT 81 (105) Q Consensus 79 ~~I 81 (105) .-| T Consensus 76 lGI 78 (189) T 1wl8_A 76 LGI 78 (189) T ss_dssp EEE T ss_pred EEE T ss_conf 753 No 167 >3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Probab=33.79 E-value=26 Score=16.01 Aligned_cols=96 Identities=9% Similarity=0.056 Sum_probs=54.1 Q ss_pred EEEEECCCCCHHH---HHHHHHHHHHHCCCCEEEEEECHHH-----HHHH--CCCCCEEEECHHHHHHHHHHHHHHHHCC Q ss_conf 8998568630889---9999999998449826888733778-----9873--0678899988447888999999874428 Q T0580 6 VLVLCAGSGTSAQ---LANAINEGANLTEVRVIANSGAYGA-----HYDI--MGVYDLIILAPQVRSYYREMKVDAERLG 75 (105) Q Consensus 6 IlL~C~~G~STs~---la~km~~~a~~~~~~~~i~A~~~~~-----~~~~--~~~~DiiLlaPQv~~~~~~ik~~~~~~~ 75 (105) |-|+...-.++.+ |.+-+++.+.++|.++.+.-+.... .... ...+|.+++.|--..... . ......+ T Consensus 14 i~l~~~~d~~~~~~~~l~~gi~~~l~~~gy~~~l~~~~~~~~~~~~~~~~~~~~~vdGiIi~~~~~~~~~-~-~~~~~~~ 91 (289) T 3g85_A 14 IALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLE-Y-LNKASLT 91 (289) T ss_dssp EEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHHHH-H-HHHCCCS T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHH-H-HHHHCCC T ss_conf 9999687568789999999999999986996799985897239999999998579888997688888199-9-9985499 Q ss_pred CCEEEECCH--HHCCCCCCHHHHHHHHHHH Q ss_conf 977871813--3101157988999999986 Q T0580 76 IQIVATRGM--EYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 76 ipv~~I~~~--~Y~~~~~dg~k~l~~i~~~ 103 (105) +|++.++.. .+.....|-..+-..+.++ T Consensus 92 iPvV~~~~~~~~~~~V~~D~~~~~~~~~~~ 121 (289) T 3g85_A 92 LPIILFNRLSNKYSSVNVDNYKMGEKASLL 121 (289) T ss_dssp SCEEEESCCCSSSEEEEECHHHHHHHHHHH T ss_pred CCEEEEEECCCCCCEEEECCHHHHHHHHHH T ss_conf 868998416899998997879999999998 No 168 >1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe} Probab=33.59 E-value=26 Score=15.99 Aligned_cols=79 Identities=13% Similarity=-0.021 Sum_probs=52.4 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-------HHHHHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 689985686308899999999998449826888733-------77898730-6788999884478889999998744289 Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA-------YGAHYDIM-GVYDLIILAPQVRSYYREMKVDAERLGI 76 (105) Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~-------~~~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~i 76 (105) |+|++|+.+.-.. ..+++.+..++.|+++.+.-.+ +.++.... ++.|+|+- ===..-.+-.|..+...++ T Consensus 93 r~LIVtd~~~~~~-~~~~v~~~L~~~gi~~~~~~~~~~ps~~~v~~~~~~~~~~~D~IIA-vGGGsviD~AK~ia~~~~~ 170 (450) T 1ta9_A 93 SAVVLADQNVWNI-CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPDDTQVIIG-VGGGKTMDSAKYIAHSMNL 170 (450) T ss_dssp EEEEEEEHHHHHH-THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCTTCCEEEE-EESHHHHHHHHHHHHHTTC T ss_pred EEEEEECCCHHHH-HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCCCCCCC T ss_conf 6999989668899-9999999998769979999838998999999999975138998999-5795376521012245552 Q ss_pred CEEEECCHH Q ss_conf 778718133 Q T0580 77 QIVATRGME 85 (105) Q Consensus 77 pv~~I~~~~ 85 (105) |+..||.-. T Consensus 171 p~i~VPTt~ 179 (450) T 1ta9_A 171 PSIICPTTA 179 (450) T ss_dssp CEEEEESSC T ss_pred EEEEEECCC T ss_conf 035541234 No 169 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Probab=33.52 E-value=26 Score=15.98 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=49.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC-EEE--EEECHHHHHHHCCCCCEEEECHHHHHHHHHH----------- Q ss_conf 97268998568630889999999999844982-688--8733778987306788999884478889999----------- Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVR-VIA--NSGAYGAHYDIMGVYDLIILAPQVRSYYREM----------- 67 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~-~~i--~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~i----------- 67 (105) .+||||+. .+.+.+- .+..++.|.. +.. .+.+..++.+.+.++|++++..+...-.+-+ T Consensus 14 ~kmkili~--~~i~~~~-----~~~L~~~g~~~v~~~~~~~~~~el~~~i~~~d~l~vrs~~~v~~~~l~~a~~Lk~I~~ 86 (416) T 3k5p_A 14 DRINVLLL--EGISQTA-----VEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGC 86 (416) T ss_dssp GGSCEEEC--SCCCHHH-----HHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEE T ss_pred CCCEEEEE--CCCCHHH-----HHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCEEEEE T ss_conf 78779992--8999999-----9999978998999689999999999984699399987899879999940999719998 Q ss_pred ---------HHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHH Q ss_conf ---------9987442897787181331011579889999999 Q T0580 68 ---------KVDAERLGIQIVATRGMEYIHLTKSPSKALQFVL 101 (105) Q Consensus 68 ---------k~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~ 101 (105) .+.+.+.|++|...|.. +.+.+-++++ T Consensus 87 ~gaG~d~Id~~~~~~~gI~V~n~pg~-------na~aVAE~~i 122 (416) T 3k5p_A 87 FSVGTNQVELKAARKRGIPVFNAPFS-------NTRSVAELVI 122 (416) T ss_dssp CSSCCTTBCHHHHHHTTCCEECCSST-------THHHHHHHHH T ss_pred CCCCCCCCCCHHHCCCCHHEECCCCC-------CCCHHHHHHH T ss_conf 88544654612200232100113566-------5440467888 No 170 >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research center for structural genomics, protein structure initiative, PSI-2; 2.20A {Pyrococcus furiosus} Probab=33.39 E-value=26 Score=16.00 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=31.4 Q ss_pred EEE-EEECCCCCHHHHHHHHH------------------HHHHHCCCCEEEEEECHHHHHHH-CCCCCEEEECHH Q ss_conf 689-98568630889999999------------------99984498268887337789873-067889998844 Q T0580 5 KVL-VLCAGSGTSAQLANAIN------------------EGANLTEVRVIANSGAYGAHYDI-MGVYDLIILAPQ 59 (105) Q Consensus 5 kIl-L~C~~G~STs~la~km~------------------~~a~~~~~~~~i~A~~~~~~~~~-~~~~DiiLlaPQ 59 (105) +|| ++|++|.-+..++.+.. +-++..+++..+.-.-...+... -+.||+|+.-|- T Consensus 58 ~VLDiG~G~G~~~~~la~~~~~~~v~gvDi~~~~i~~A~~n~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~NPP 132 (230) T 3evz_A 58 VALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230) T ss_dssp EEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC T ss_pred EEEEECCCCCHHHCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCC T ss_conf 899973788810042210011100012443211112330023320211000120112222223333430210387 No 171 >3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} Probab=33.34 E-value=26 Score=15.96 Aligned_cols=74 Identities=12% Similarity=0.010 Sum_probs=38.7 Q ss_pred EEEEECCCCCHHHH---HHHHHHHHHHCCCCEEEEEECHHHHH-----HHCCCCCEEEECHHHHHHHHHHHHHHHHCCCC Q ss_conf 89985686308899---99999999844982688873377898-----73067889998844788899999987442897 Q T0580 6 VLVLCAGSGTSAQL---ANAINEGANLTEVRVIANSGAYGAHY-----DIMGVYDLIILAPQVRSYYREMKVDAERLGIQ 77 (105) Q Consensus 6 IlL~C~~G~STs~l---a~km~~~a~~~~~~~~i~A~~~~~~~-----~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ip 77 (105) -..+.+.|.+-+.- +-|++|.+. ...++.+..++. ..-++.-++++.|+-..+.+.+.....+.+.. T Consensus 225 ~~~~lG~G~~~~~A~E~aLKl~E~~~-----~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~r~~~l~~~~~~~~~~ 299 (366) T 3knz_A 225 DIRLTGPATLFGTVQEGALKMLETLR-----CPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEWTPS 299 (366) T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHC-----SCEEEEEHHHHHHTHHHHCCTTEEEEEECSSCCHHHHHHHHHHHHHCSC T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCC-----EEEEECCHHHHHCCCCHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCC T ss_conf 66663255413789999999856485-----5655505577644662221688629999478379999999999965797 Q ss_pred EEEECCH Q ss_conf 7871813 Q T0580 78 IVATRGM 84 (105) Q Consensus 78 v~~I~~~ 84 (105) +.+|.+. T Consensus 300 v~~i~~~ 306 (366) T 3knz_A 300 IYRIGPQ 306 (366) T ss_dssp EEEEESS T ss_pred EEEEECC T ss_conf 8999343 No 172 >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Probab=33.21 E-value=26 Score=15.95 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=23.6 Q ss_pred CCCCEEEEEEC-------------CCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 99726899856-------------863088999999999984498268887 Q T0580 1 SKELKVLVLCA-------------GSGTSAQLANAINEGANLTEVRVIANS 38 (105) Q Consensus 1 ~k~~kIlL~C~-------------~G~STs~la~km~~~a~~~~~~~~i~A 38 (105) +++|||.++|- ||+.+. +..+-++..++|.+++|-+ T Consensus 18 ~~~mri~~vs~~~~p~~~~g~~~~GG~~~~--v~~La~~L~~~Gh~V~V~t 66 (438) T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVY--ILSTATELAKQGIEVDIYT 66 (438) T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHH--HHHHHHHHHHTTCEEEEEE T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHCCCEEEEEE T ss_conf 998779998565364000599986789999--9999999997799599993 No 173 >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Probab=32.97 E-value=27 Score=15.93 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=49.0 Q ss_pred EEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC-HH----------HHHHHHHHHHHHHH Q ss_conf 89985686-30889999999999844982688873377898730678899988-44----------78889999998744 Q T0580 6 VLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA-PQ----------VRSYYREMKVDAER 73 (105) Q Consensus 6 IlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla-PQ----------v~~~~~~ik~~~~~ 73 (105) |.++.++. .+|-.+|+.+.+.+.+.++++.+.-.+.....+ +.++|.++++ |= ++...+.++ ... T Consensus 2 V~IvY~S~tGnT~~iA~~ia~~l~~~~~~v~~~~~~~~~~~~-~~~~d~ii~g~pT~~~g~~p~~~~~~~~~~l~--~~~ 78 (137) T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDD-VASKDVILLGCPAMGSEELEDSVVEPFFTDLA--PKL 78 (137) T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHH-HHTCSEEEEECCCBTTTBCCHHHHHHHHHHHG--GGC T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HHHHHHEEEEECCCCCCCCCHHHHHHHHHHHC--CCC T ss_conf 899999987139999999999987669853222187878878-97303279993562688798257999999845--547 Q ss_pred CCCCEEEECCHHHCCC Q ss_conf 2897787181331011 Q T0580 74 LGIQIVATRGMEYIHL 89 (105) Q Consensus 74 ~~ipv~~I~~~~Y~~~ 89 (105) .|.++.+.-. |++. T Consensus 79 ~gk~~~~fgs--~g~~ 92 (137) T 2fz5_A 79 KGKKVGLFGS--YGWG 92 (137) T ss_dssp SSCEEEEEEE--ESSC T ss_pred CCCEEEEEEE--CCCC T ss_conf 9997999996--3788 No 174 >2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase, mycobacteria, complex with CDP; HET: CDP IPE; 2.2A {Mycobacterium smegmatis} Probab=32.85 E-value=27 Score=15.91 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=35.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC--HHHHHHHHHHHHHHHH-CCCCE Q ss_conf 68630889999999999844982688873377898730678899988--4478889999998744-28977 Q T0580 11 AGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA--PQVRSYYREMKVDAER-LGIQI 78 (105) Q Consensus 11 ~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla--PQv~~~~~~ik~~~~~-~~ipv 78 (105) ..|.+|..|.++..+..+++|.. +.+.|+.+++ |.+.-+.+++++..++ .++|| T Consensus 73 ~k~~~S~~~L~~~~~~l~~~g~~--------------I~NIDitIi~e~PKi~~~~~~m~~~la~lL~~~I 129 (165) T 2uzh_A 73 WRGASGADMIRHVRGLVENAGFV--------------IGNATVQVIGNRPKVGPRREEAQQVLSELVGAPV 129 (165) T ss_dssp GTTCCHHHHHHHHHHHHHHTTEE--------------EEEEEEEEESSSSCCGGGHHHHHHHHHHHHTSCE T ss_pred HCCCCCHHHHHHHHHHHHHHCCE--------------EEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCE T ss_conf 44689899999999999972570--------------5654689992778428999999999999879996 No 175 >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Probab=32.76 E-value=12 Score=17.87 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=6.5 Q ss_pred EEEEEECCCCCH Q ss_conf 689985686308 Q T0580 5 KVLVLCAGSGTS 16 (105) Q Consensus 5 kIlL~C~~G~ST 16 (105) ||++++++|+|| T Consensus 48 ~IvvlTGAGISt 59 (354) T 2hjh_A 48 KILVLTGAGVST 59 (354) T ss_dssp SEEEEECGGGGG T ss_pred EEEEEECHHHHH T ss_conf 099994825548 No 176 >1o1x_A Ribose-5-phosphate isomerase RPIB; TM1080, structural genomics, JCSG, PSI, protein structure initiative; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Probab=32.61 E-value=15 Score=17.41 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=16.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 972689985686308899999999998449826 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRV 34 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~ 34 (105) -.|||.+.|..+.- -|-+++++..+++|.++ T Consensus 11 ~~MKI~igsDhaG~--~lK~~l~~~L~~~g~~V 41 (155) T 1o1x_A 11 HHVKIAIASDHAAF--ELKEKVKNYLLGKGIEV 41 (155) T ss_dssp CCCEEEEEECSTTH--HHHHHHHHHHHHTTCEE T ss_pred CCEEEEEEECCHHH--HHHHHHHHHHHHCCCEE T ss_conf 76499997387279--99999999999779989 No 177 >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Probab=32.29 E-value=27 Score=15.86 Aligned_cols=80 Identities=11% Similarity=0.068 Sum_probs=48.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE----------------CHHHHHHHC--CCCCEEEECHHHHH Q ss_conf 997268998568630889999999999844982688873----------------377898730--67889998844788 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG----------------AYGAHYDIM--GVYDLIILAPQVRS 62 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~----------------~~~~~~~~~--~~~DiiLlaPQv~~ 62 (105) ++++||.++=.|++...+.+..+++. .+ +++.|. -+..+++.+ .+.|+|.++--... T Consensus 5 ~~~ikigiIG~G~~g~~~h~~~l~~~---~~--~~lvav~d~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 79 (364) T 3e82_A 5 NNTINIALIGYGFVGKTFHAPLIRSV---PG--LNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNAT 79 (364) T ss_dssp --CEEEEEECCSHHHHHTHHHHHHTS---TT--EEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGG T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHC---CC--CEEEEEECCCHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCHHH T ss_conf 99775999948099999999999719---89--58999988999999964778965899999956999998998488788 Q ss_pred HHHHHHHHHHHCCCCEEEECCHHH Q ss_conf 899999987442897787181331 Q T0580 63 YYREMKVDAERLGIQIVATRGMEY 86 (105) Q Consensus 63 ~~~~ik~~~~~~~ipv~~I~~~~Y 86 (105) +.+-+++ +-+.|++|.+=.|... T Consensus 80 H~~~~~~-al~~GkhVl~EKPla~ 102 (364) T 3e82_A 80 HAPLARL-ALNAGKHVVVDKPFTL 102 (364) T ss_dssp HHHHHHH-HHHTTCEEEECSCSCS T ss_pred HHHHHHH-HHHCCCEEEECCCCHH T ss_conf 7888888-9854986985388302 No 178 >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} Probab=32.00 E-value=28 Score=15.83 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=65.0 Q ss_pred CEEEEEECCCCC-HHHHHHHHHHHHHHCCCCEEEEEECH----------HHHHHHCCCCCEEEECHHHHHHHHHHHHHHH Q ss_conf 268998568630-88999999999984498268887337----------7898730678899988447888999999874 Q T0580 4 LKVLVLCAGSGT-SAQLANAINEGANLTEVRVIANSGAY----------GAHYDIMGVYDLIILAPQVRSYYREMKVDAE 72 (105) Q Consensus 4 ~kIlL~C~~G~S-Ts~la~km~~~a~~~~~~~~i~A~~~----------~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~ 72 (105) -+|.|+...+-. .--.++++.+.++++|+.+.++.... ....+...+.|+++.====.-++.-++.. . T Consensus 6 k~Igiv~~~~~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~a~~~~-~ 84 (292) T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTL-A 84 (292) T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHHHHH-T T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHCCCCCEEEEECCCCHHHHHHHHH-C T ss_conf 689999508997999999999999997869999807898763998888466557254776899977883598886764-2 Q ss_pred HCCCCEEEECCHHHCCCCC----CHHHHHHHHHH Q ss_conf 4289778718133101157----98899999998 Q T0580 73 RLGIQIVATRGMEYIHLTK----SPSKALQFVLE 102 (105) Q Consensus 73 ~~~ipv~~I~~~~Y~~~~~----dg~k~l~~i~~ 102 (105) +.++|+.-|+.-..||++. +-+..++.+++ T Consensus 85 ~~~~PilGIn~G~lGFL~~~~~~~~~~~l~~~~~ 118 (292) T 2an1_A 85 RYDINVIGINRGNLGFLTDLDPDNALQQLSDVLE 118 (292) T ss_dssp TSSCEEEEBCSSSCCSSCCBCTTSHHHHHHHHHT T ss_pred CCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHH T ss_conf 5574599701455432552254668999999862 No 179 >1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A Probab=31.75 E-value=28 Score=15.81 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=35.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEE--CHHHHHHHHHHHHHHHHC-CCCE Q ss_conf 863088999999999984498268887337789873067889998--844788899999987442-8977 Q T0580 12 GSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIIL--APQVRSYYREMKVDAERL-GIQI 78 (105) Q Consensus 12 ~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLl--aPQv~~~~~~ik~~~~~~-~ipv 78 (105) .|+||..|.+...+..+++|.. +.+.|+.++ .|.+.-+.+++++..++. ++|. T Consensus 69 k~~~S~~~L~~~~~~~~~~g~~--------------I~NiD~tIi~e~PKi~p~~~~i~~~ls~lL~i~~ 124 (152) T 1iv3_A 69 RGERSEVFLREAMRLVEARGAK--------------LLQASLVLTLDRPKLGPHRKALVDSLSRLMRLPQ 124 (152) T ss_dssp TTCCHHHHHHHHHHHHHHTTCC--------------EEEEEEEEECSSSCCGGGHHHHHHHHHHHHTCCG T ss_pred CCCCHHHHHHHHHHHHHHCCEE--------------EEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 7997499999999998768869--------------9963489994376328899999999999969981 No 180 >3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} Probab=31.71 E-value=28 Score=15.80 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=42.4 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECHHH--HHHHCCCCCEEE-----ECHHHHHHHHHHHHHHHHCC Q ss_conf 2689985686-308899999999998449826888733778--987306788999-----88447888999999874428 Q T0580 4 LKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAYGA--HYDIMGVYDLII-----LAPQVRSYYREMKVDAERLG 75 (105) Q Consensus 4 ~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~~~--~~~~~~~~DiiL-----laPQv~~~~~~ik~~~~~~~ 75 (105) ||+.|+|+++ .+..++.. +.-++ +.|+.-+. +.+..-..|+++ +.|..+..+ + . + T Consensus 1 mk~~il~~g~~~p~~~~~~--------~~~d~-iIavDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~---~----~-~ 63 (212) T 3l8m_A 1 MKANLLCGNRNLPKHILVE--------HKHEH-WIGIDRGTLILLESGITPQFAVGDFDSISDSERNFI---Q----Q-Q 63 (212) T ss_dssp CEEEEECCSSSCCTTHHHH--------TTTSE-EEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHH---H----H-H T ss_pred CEEEEEECCCCCCHHHHHH--------CCCCE-EEEECHHHHHHHHCCCCCCEEEECCCCCCHHHHHHH---H----C-C T ss_conf 9899996899899899974--------34988-999875899999879985989746889986899986---2----6-7 Q ss_pred CCEEEECCHHHCCCCCCHHHHHHHHHHH Q ss_conf 9778718133101157988999999986 Q T0580 76 IQIVATRGMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 76 ipv~~I~~~~Y~~~~~dg~k~l~~i~~~ 103 (105) +++..-++..+ -| |.+++|+.+.++ T Consensus 64 ~~~~~~~~dkd--~T-D~ekAl~~~~~~ 88 (212) T 3l8m_A 64 IEINPYNSEKD--DT-DLALGIDQAVKR 88 (212) T ss_dssp TBCCCCC---C--BC-HHHHHHHHHHHT T ss_pred CEEEEECCCCC--HH-HHHHHHHHHHHC T ss_conf 32998275656--56-999999999867 No 181 >3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} Probab=31.46 E-value=28 Score=15.78 Aligned_cols=101 Identities=11% Similarity=0.098 Sum_probs=58.2 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHH--------------------------HHCCCCCEE-EE Q ss_conf 268998568630889999999999844982688873377898--------------------------730678899-98 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY--------------------------DIMGVYDLI-IL 56 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~--------------------------~~~~~~Dii-Ll 56 (105) -|-++++++|...+-..+.+++.+++.++|+-....+.+.+. +..++.|+| .+ T Consensus 35 k~Pvii~G~~~~~~~~~~~~~~~~~~~~iPv~~t~~~kg~~~e~~p~~~g~~~G~~g~~~~~~~~~~~~~~~~aDlii~v 114 (170) T 3cf4_G 35 KRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITI 114 (170) T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSSSSCCCSEEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECHHHCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEE T ss_conf 89889947872535799999999997197989871116766777841126340001023236302456654267989997 Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCH-----HHCCCCC---CHHHHHHHHHHHC Q ss_conf 8447888999999874428977871813-----3101157---9889999999862 Q T0580 57 APQVRSYYREMKVDAERLGIQIVATRGM-----EYIHLTK---SPSKALQFVLEHY 104 (105) Q Consensus 57 aPQv~~~~~~ik~~~~~~~ipv~~I~~~-----~Y~~~~~---dg~k~l~~i~~~l 104 (105) |....+.--.........++....|++. +|.+.-. |-...|+.++|.| T Consensus 115 G~~~~~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~v~~~d~~~~L~~lie~L 170 (170) T 3cf4_G 115 GFKKFYINQVLSAAKNFSNLKTIAIERGYIQNATMSFGNLSKADHYAALDELINAL 170 (170) T ss_dssp SCCHHHHHHHHHHHHHHCCCCEEECSSSCCTTSSEECCCCCHHHHHHHHHHHHHTC T ss_pred CCCCCCHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 88614010042455568880799738421456644357526899999999999609 No 182 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=31.11 E-value=29 Score=15.74 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=44.7 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCC-CCEEE---------------------EEECHHHHHHHCCCCCEEEECHH Q ss_conf 972689985686308899999999998449-82688---------------------87337789873067889998844 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTE-VRVIA---------------------NSGAYGAHYDIMGVYDLIILAPQ 59 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~-~~~~i---------------------~A~~~~~~~~~~~~~DiiLlaPQ 59 (105) .+.||+++=+ |..-+.++..+.+ ++ .++.+ +.....++.+.+.+.|+++.++- T Consensus 4 m~~kI~ViGa-G~vG~~ia~~L~~----~~~~~v~~~dr~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~dvvi~~~p 78 (118) T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKT----SSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118) T ss_dssp TCEEEEEECC-SHHHHHHHHHHHH----CSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC T ss_pred CCCCEEEECC-CHHHHHHHHHHHH----CCCCCEEEEECCHHHHHHHCCCCCCEEECCCCCHHHHHHHHCCCCEEEECCC T ss_conf 6549899866-9999999999985----8998778750668887641022221354033234689999669999998977 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 78889999998744289778718 Q T0580 60 VRSYYREMKVDAERLGIQIVATR 82 (105) Q Consensus 60 v~~~~~~ik~~~~~~~ipv~~I~ 82 (105) ..+. ..+-+.|-+.|+++.-+. T Consensus 79 ~~~~-~~va~~~~~~gv~~~Dl~ 100 (118) T 3ic5_A 79 FFLT-PIIAKAAKAAGAHYFDLT 100 (118) T ss_dssp GGGH-HHHHHHHHHTTCEEECCC T ss_pred HHHH-HHHHHHHHHCCCCEEECC T ss_conf 3411-999999999099979788 No 183 >1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 3esy_A* 3esz_A* 3esx_A* Probab=30.99 E-value=29 Score=15.73 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=33.1 Q ss_pred EEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC Q ss_conf 6899856-8630889999999999844982688873377898730678899988 Q T0580 5 KVLVLCA-GSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA 57 (105) Q Consensus 5 kIlL~C~-~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla 57 (105) ||+++-+ ...+|--+|+.+.+.+..++++ +........ +.+.++|.++++ T Consensus 3 KI~I~YgS~tGnTe~vA~~ia~~l~~~~~~--v~~~~~~~~-~dl~~~d~vi~g 53 (169) T 1obo_A 3 KIGLFYGTQTGKTESVAEIIRDEFGNDVVT--LHDVSQAEV-TDLNDYQYLIIG 53 (169) T ss_dssp SEEEEECCSSSHHHHHHHHHHHHHCTTTEE--EEETTTCCG-GGGGGCSEEEEE T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCCEE--EEECCCCCH-HHHCCCCEEEEE T ss_conf 899999999826999999999985568737--998565787-686068779999 No 184 >2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} Probab=30.94 E-value=25 Score=16.09 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=31.4 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCC Q ss_conf 7268998568630889999999999844982688873377898730-678899988447888999999874428 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIM-GVYDLIILAPQVRSYYREMKVDAERLG 75 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ 75 (105) .-+||+.|.+|+|-|-.+--. =....+|+++ .+..+.+ ..--.+-..|.....+.++++.....+ T Consensus 89 ~~~VLVhC~~G~~RS~~vv~a-YLm~~~~~~~-------~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~L~~~~ 154 (164) T 2hcm_A 89 GGSCLVYCKNGRSRSAAVCTA-YLMRHRGHSL-------DRAFQMVKSARPVAEPNLGFWAQLQKYEQTLQAQA 154 (164) T ss_dssp TCEEEEEESSSSHHHHHHHHH-HHHHHSCCCH-------HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHHTT T ss_pred CCEEEEEECCCCCCCHHHHHH-HHHHHCCCCH-------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 752899808998742999999-9999829999-------99999999989977899889999999999998678 No 185 >3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} Probab=30.76 E-value=29 Score=15.71 Aligned_cols=98 Identities=7% Similarity=0.019 Sum_probs=56.9 Q ss_pred CEEEEEECCCCCH----HHHHHHHHHHHHHCCCCEEEEEECHHH------HHHH-CCCCCEEEECHHHHHHHHHHHHHHH Q ss_conf 2689985686308----899999999998449826888733778------9873-0678899988447888999999874 Q T0580 4 LKVLVLCAGSGTS----AQLANAINEGANLTEVRVIANSGAYGA------HYDI-MGVYDLIILAPQVRSYYREMKVDAE 72 (105) Q Consensus 4 ~kIlL~C~~G~ST----s~la~km~~~a~~~~~~~~i~A~~~~~------~~~~-~~~~DiiLlaPQv~~~~~~ik~~~~ 72 (105) .+++-+.-.-.++ +-+++-+++++.++|..+.+....... ++.. ....|-+++.|...- ....... T Consensus 13 s~~Igliv~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~~~---~~~~~~~ 89 (301) T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRR---IVDPESG 89 (301) T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEE---ECCCCCT T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---HHHHHHH T ss_conf 9989999588767979999999999999977998999978999699999999987478768998513320---4589998 Q ss_pred HCCCCEEEECCH-----HHCCCCCCHHHHHHHHHHHC Q ss_conf 428977871813-----31011579889999999862 Q T0580 73 RLGIQIVATRGM-----EYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 73 ~~~ipv~~I~~~-----~Y~~~~~dg~k~l~~i~~~l 104 (105) +.++|++.++.. .+.....|..++-..+.++| T Consensus 90 ~~~ip~V~~~~~~~~~~~~~~V~~D~~~~~~~~~~~L 126 (301) T 3miz_A 90 DVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYL 126 (301) T ss_dssp TCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHH T ss_pred HCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHH T ss_conf 3699989993355788888789977899999999999 No 186 >1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Probab=30.71 E-value=21 Score=16.51 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=30.4 Q ss_pred EEEEEECC-CCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC Q ss_conf 68998568-630889999999999844982688873377898730678899988 Q T0580 5 KVLVLCAG-SGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA 57 (105) Q Consensus 5 kIlL~C~~-G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla 57 (105) ||.|+-++ ..+|-.+|+++.+.+..++. .++........ +.+.++|.++++ T Consensus 2 KI~I~YgS~tGnte~vA~~i~~~l~~~~~-~~v~~~~~~~~-~~l~~~d~vi~~ 53 (179) T 1yob_A 2 KIGLFFGSNTGKTRKVAKSIKKRFDDETM-SDALNVNRVSA-EDFAQYQFLILG 53 (179) T ss_dssp CEEEEECCSSSHHHHHHHHHHTTSCTTTB-CCCEEGGGCCH-HHHHTCSEEEEE T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCC-EEEEECCCCCH-HHHCCCCEEEEE T ss_conf 09999999755689999999999741799-18997233787-682479879999 No 187 >1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A* Probab=30.69 E-value=29 Score=15.70 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=44.4 Q ss_pred CCCEEEEEECCCCCH-HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEEC Q ss_conf 972689985686308-89999999999844982688873377898730--678899988 Q T0580 2 KELKVLVLCAGSGTS-AQLANAINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILA 57 (105) Q Consensus 2 k~~kIlL~C~~G~ST-s~la~km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLla 57 (105) +++++.+...+|-+. .-.+..+++..++-|+++++.....+.+.... .+||+.+.+ T Consensus 350 ~~l~l~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~i~~~~~~~~~~~~~~g~~d~~~~~ 408 (529) T 1zu0_A 350 KSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTN 408 (529) T ss_dssp CCCCEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHHTTCCSEEEEE T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEEC T ss_conf 55430331267866899999999999985202233333110231022105764379854 No 188 >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Probab=30.58 E-value=29 Score=15.69 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=58.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE----------EEEECHHHHHHHC--CCCCEEEECHHHHHHHHHHH Q ss_conf 99726899856863088999999999984498268----------8873377898730--67889998844788899999 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVI----------ANSGAYGAHYDIM--GVYDLIILAPQVRSYYREMK 68 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~----------i~A~~~~~~~~~~--~~~DiiLlaPQv~~~~~~ik 68 (105) |.+|||.++=.|.+++ ..+..+++.-....+.+- .....+..+++.+ ++.|+|.++---..+.+-++ T Consensus 5 ~~kikvgIIG~G~~g~-~h~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ell~~~~iDaV~I~tp~~~H~~~~~ 83 (294) T 1lc0_A 5 SGKFGVVVVGVGRAGS-VRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYIR 83 (294) T ss_dssp CCSEEEEEECCSHHHH-HHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHHH T ss_pred CCCCEEEEECCCHHHH-HHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHCCCCCCEEEEECCCHHHHHHHH T ss_conf 9885899992869999-999999608997589999488868876430677489999954999989999289566689999 Q ss_pred HHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 9874428977871813310115798899999998 Q T0580 69 VDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 69 ~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) +.. +.|++|.+=-|..-.. .+.+++++.+.+ T Consensus 84 ~al-~~gkhV~~EKPla~~~--~e~~~l~~~a~~ 114 (294) T 1lc0_A 84 QFL-QAGKHVLVEYPMTLSF--AAAQELWELAAQ 114 (294) T ss_dssp HHH-HTTCEEEEESCSCSCH--HHHHHHHHHHHH T ss_pred HHH-HCCCCEEECCCCCCCH--HHHHHHHHHHHH T ss_conf 999-7599734206763899--999999999998 No 189 >3c5y_A Ribose/galactose isomerase; YP_001165900.1, putative ribose 5-phosphate isomerase, structural genomics; HET: MSE; 1.81A {Novosphingobium aromaticivorans DSM12444} Probab=30.49 E-value=21 Score=16.49 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=19.7 Q ss_pred CCEEEEEECCC-CC-HHHHHHHHHHHHHHCCCCE Q ss_conf 72689985686-30-8899999999998449826 Q T0580 3 ELKVLVLCAGS-GT-SAQLANAINEGANLTEVRV 34 (105) Q Consensus 3 ~~kIlL~C~~G-~S-Ts~la~km~~~a~~~~~~~ 34 (105) -|||-|.|... .. ..++.+.+++.+++.|.++ T Consensus 19 ~MKIAi~~Dhs~~~kn~~I~~~Lk~~l~~~GheV 52 (231) T 3c5y_A 19 GMKIALIIENSQAAKNAVVHEALTTVAEPLGHKV 52 (231) T ss_dssp CCEEEECCCGGGGGGHHHHHHHHHHHHGGGTCEE T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEE T ss_conf 8679996466203453799999999998579988 No 190 >3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} Probab=30.47 E-value=29 Score=15.68 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=50.2 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHH-----HHHHC-CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECC------ Q ss_conf 8899999999998449826888733778-----98730-67889998844788899999987442897787181------ Q T0580 16 SAQLANAINEGANLTEVRVIANSGAYGA-----HYDIM-GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRG------ 83 (105) Q Consensus 16 Ts~la~km~~~a~~~~~~~~i~A~~~~~-----~~~~~-~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~------ 83 (105) -+-+.+-+.+.+.++|.++.+....... +.... ...|-+++.|.. .-.+.++.... ++|++.++. T Consensus 26 ~~~l~~~i~~~a~~~gy~l~v~~~~~~~~e~~~i~~l~~~~vdgiIi~~~~-~~~~~~~~l~~--~iPvV~v~~~~~~~~ 102 (289) T 3k9c_A 26 HGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTR-FDTDELGALAD--RVPALVVARASGLPG 102 (289) T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCC-CCHHHHHHHHT--TSCEEEESSCCSSTT T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHHHHC--CCCEEEECCCCCCCC T ss_conf 999999999999986998999948988899999999997097512110230-15889987544--477586324467555 Q ss_pred HHHCCCCCCHHHHHHHHHHHC Q ss_conf 331011579889999999862 Q T0580 84 MEYIHLTKSPSKALQFVLEHY 104 (105) Q Consensus 84 ~~Y~~~~~dg~k~l~~i~~~l 104 (105) ..| ...|-..+...+.+.| T Consensus 103 ~~~--V~~D~~~a~~~a~~~l 121 (289) T 3k9c_A 103 VGA--VRGDDVAGITLAVDHL 121 (289) T ss_dssp SEE--EEECHHHHHHHHHHHH T ss_pred CCC--CCCCCCCCCCHHHHHE T ss_conf 664--4565211110012210 No 191 >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotation, magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Probab=30.04 E-value=30 Score=15.63 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=48.1 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHH-HHH--CCCCCEEEECHHH-----HHHHHHHHHHHHH Q ss_conf 9726899856863088999999999984498268887337789-873--0678899988447-----8889999998744 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAH-YDI--MGVYDLIILAPQV-----RSYYREMKVDAER 73 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~-~~~--~~~~DiiLlaPQv-----~~~~~~ik~~~~~ 73 (105) ..+|||++=.. ..+.+-++...+..|......|.+-.+. ... ...+|+|++.=++ ......+++.... T Consensus 4 ~~~rvLiVdD~----~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~~dlvi~D~~mP~~~G~el~~~ir~~~~~ 79 (129) T 3h1g_A 4 GSMKLLVVDDS----STMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRF 79 (129) T ss_dssp --CCEEEECSC----HHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTC T ss_pred CCCEEEEEECC----HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCEEEEHHCCCCCCHHHHHHHHHHCCCC T ss_conf 88899999188----99999999999986997999989999999999707999899614218998469999999847778 Q ss_pred CCCCEEEECC Q ss_conf 2897787181 Q T0580 74 LGIQIVATRG 83 (105) Q Consensus 74 ~~ipv~~I~~ 83 (105) .++|+..+.. T Consensus 80 ~~ipiI~lt~ 89 (129) T 3h1g_A 80 KEIPIIMITA 89 (129) T ss_dssp TTCCEEEEES T ss_pred CCCEEEEEEC T ss_conf 9980999989 No 192 >2pk8_A Uncharacterized protein PF0899; structural genomics, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1 Probab=29.62 E-value=30 Score=15.59 Aligned_cols=31 Identities=13% Similarity=-0.060 Sum_probs=20.2 Q ss_pred HHHHHHCCCCCEEEECHHHH-HHHHHHHHHHH Q ss_conf 78987306788999884478-88999999874 Q T0580 42 GAHYDIMGVYDLIILAPQVR-SYYREMKVDAE 72 (105) Q Consensus 42 ~~~~~~~~~~DiiLlaPQv~-~~~~~ik~~~~ 72 (105) .+++...=+.|++|.||+.- |..+.+++.+. T Consensus 27 nELk~dG~ePDiiL~G~eayef~~~~vk~e~g 58 (103) T 2pk8_A 27 NELKMDGFNPDIILFGREAYNFLSNLLKKEME 58 (103) T ss_dssp HHHHHTTCCCCEEEECHHHHHHHHHHHHHHHT T ss_pred HHHHHCCCCCCEEEECHHHHHHHHHHHHHHHC T ss_conf 99986589987799858999999999988735 No 193 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=29.19 E-value=31 Score=15.55 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=47.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHH-HHHHH--CCCCCEEEECHHHHHH-----HHHHHHHHHH Q ss_conf 97268998568630889999999999844982688873377-89873--0678899988447888-----9999998744 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYG-AHYDI--MGVYDLIILAPQVRSY-----YREMKVDAER 73 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~-~~~~~--~~~~DiiLlaPQv~~~-----~~~ik~~~~~ 73 (105) +..|||++=..-..- .-+++..+..|..+.+..+.-+ +.-+. ...+|+|++-=++--+ ...+++.... T Consensus 4 ~~~rILvVDD~~~~~----~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~DlillD~~mP~~dG~el~~~ir~~~~~ 79 (144) T 3kht_A 4 RSKRVLVVEDNPDDI----ALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGAN 79 (144) T ss_dssp -CEEEEEECCCHHHH----HHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTT T ss_pred CCCEEEEEECCHHHH----HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCC T ss_conf 898999995899999----9999999968998599998999999999984799889998415999999999999837877 Q ss_pred CCCCEEEECCH Q ss_conf 28977871813 Q T0580 74 LGIQIVATRGM 84 (105) Q Consensus 74 ~~ipv~~I~~~ 84 (105) ..+||..+... T Consensus 80 ~~~PvI~lT~~ 90 (144) T 3kht_A 80 QHTPIVILTDN 90 (144) T ss_dssp TTCCEEEEETT T ss_pred CCCEEEEEECC T ss_conf 99909999788 No 194 >3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Probab=29.11 E-value=31 Score=15.54 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=18.6 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCC-CEEEEEECHHHHHH Q ss_conf 726899856863088999999999984498-26888733778987 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEV-RVIANSGAYGAHYD 46 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~-~~~i~A~~~~~~~~ 46 (105) .-.|+++|.+|..++..+..++ +.|. ++.+-..++.+... T Consensus 91 ~~~iv~~c~~g~rs~~~a~~L~----~~G~~~v~~l~GG~~~W~~ 131 (139) T 3d1p_A 91 AKELIFYCASGKRGGEAQKVAS----SHGYSNTSLYPGSMNDWVS 131 (139) T ss_dssp TSEEEEECSSSHHHHHHHHHHH----TTTCCSEEECTTHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHHHHH----HCCCCCEEEECCHHHHHHH T ss_conf 9758886788880899999999----8599887996680999998 No 195 >2b4y_A NAD-dependent deacetylase sirtuin-5; histone deacetylase, structural genomics, structural genomics consortium, SGC, hydrolase; HET: APR EPE; 1.90A {Homo sapiens} SCOP: c.31.1.5 PDB: 2nyr_A* Probab=28.65 E-value=19 Score=16.75 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=7.1 Q ss_pred HHHHCCCCEEEECC Q ss_conf 87442897787181 Q T0580 70 DAERLGIQIVATRG 83 (105) Q Consensus 70 ~~~~~~ipv~~I~~ 83 (105) .+.+.|+|++.|++ T Consensus 232 ~a~~~g~~vi~iN~ 245 (271) T 2b4y_A 232 QVAARGVPVAEFNT 245 (271) T ss_dssp HHHHTTCCEEEEES T ss_pred HHHHCCCEEEEECC T ss_conf 99986990999829 No 196 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Probab=28.58 E-value=32 Score=15.48 Aligned_cols=66 Identities=11% Similarity=-0.018 Sum_probs=34.5 Q ss_pred CCEEEEE-ECCCCCHHHHHHH------------------HHHHHHHCCCC-EEEEEECHHHHHHHCCCCCEEEECHHHHH Q ss_conf 7268998-5686308899999------------------99999844982-68887337789873067889998844788 Q T0580 3 ELKVLVL-CAGSGTSAQLANA------------------INEGANLTEVR-VIANSGAYGAHYDIMGVYDLIILAPQVRS 62 (105) Q Consensus 3 ~~kIlL~-C~~G~STs~la~k------------------m~~~a~~~~~~-~~i~A~~~~~~~~~~~~~DiiLlaPQv~~ 62 (105) ..+||-+ |+.|--|++++.+ .++.+...|.+ +.+.......+ -..+||+|+++.++.- T Consensus 123 ~~rVLdvGcG~g~lT~i~la~~~g~~V~gIDis~~~~~~Ar~~~~~~gl~~v~~~~~d~~~l--~~~~fDvV~va~~v~~ 200 (298) T 3fpf_A 123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI--DGLEFDVLMVAALAEP 200 (298) T ss_dssp TCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG--GGCCCSEEEECTTCSC T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCCCCCEEEECCCCCC T ss_conf 99899991732499999999656998999939999999999989973997189996144436--8999798998976633 Q ss_pred HHHHHHHH Q ss_conf 89999998 Q T0580 63 YYREMKVD 70 (105) Q Consensus 63 ~~~~ik~~ 70 (105) ..+-++.. T Consensus 201 k~~vl~~l 208 (298) T 3fpf_A 201 KRRVFRNI 208 (298) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 68899999 No 197 >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Probab=28.44 E-value=32 Score=15.47 Aligned_cols=73 Identities=5% Similarity=0.081 Sum_probs=42.4 Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHH Q ss_conf 999999844982688873377898730--678899988447888999999874428977871813310115798899999 Q T0580 22 AINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQF 99 (105) Q Consensus 22 km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~ 99 (105) +.++.+++.+... ..+.++++.+ .+.|+|.++-.-..+.+-+... -+.|++|.+=-|..-..- +.+++++. T Consensus 41 ~~~~~~~~~~~~~----~~y~~~~ell~~~~iD~V~I~tp~~~H~~~~~~a-l~~GkhVl~EKP~~~~~~--e~~~l~~~ 113 (337) T 3ip3_A 41 KLEKAISEMNIKP----KKYNNWWEMLEKEKPDILVINTVFSLNGKILLEA-LERKIHAFVEKPIATTFE--DLEKIRSV 113 (337) T ss_dssp HHHHHHHTTTCCC----EECSSHHHHHHHHCCSEEEECSSHHHHHHHHHHH-HHTTCEEEECSSSCSSHH--HHHHHHHH T ss_pred HHHHHHHHHCCCC----EECCCHHHHHCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCCHH--HHHHHHHH T ss_conf 9999899849997----0409999996599988899968863779999999-988996999578444314--67888877 Q ss_pred HH Q ss_conf 99 Q T0580 100 VL 101 (105) Q Consensus 100 i~ 101 (105) +. T Consensus 114 ~~ 115 (337) T 3ip3_A 114 YQ 115 (337) T ss_dssp HH T ss_pred HH T ss_conf 77 No 198 >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Probab=27.92 E-value=33 Score=15.41 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=49.6 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE----------------CHHHHHHHC--CCCCEEEECHHHHH Q ss_conf 997268998568630889999999999844982688873----------------377898730--67889998844788 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG----------------AYGAHYDIM--GVYDLIILAPQVRS 62 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~----------------~~~~~~~~~--~~~DiiLlaPQv~~ 62 (105) |+++||.++=.|.+...+.+..+++. . ++++.|+ .+.++++.+ .+.|+|.++.-... T Consensus 5 ~~kikigiiG~G~~g~~~h~~~~~~~---~--~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~l~~~~iD~V~i~tp~~~ 79 (352) T 3kux_A 5 ADKIKVGLLGYGYASKTFHAPLIMGT---P--GLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDT 79 (352) T ss_dssp TCCEEEEEECCSHHHHHTHHHHHHTS---T--TEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTT T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC---C--CEEEEEEECCCHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCHHH T ss_conf 11444999979699999999998349---8--849999989899999974799976898999956999988999288378 Q ss_pred HHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHH Q ss_conf 89999998744289778718133101157988999999 Q T0580 63 YYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFV 100 (105) Q Consensus 63 ~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i 100 (105) +++-.++.. +.|++|.+=-|... +-+.+.+++ T Consensus 80 H~~~~~~al-~~gk~v~~EKP~a~-----~~~ea~~l~ 111 (352) T 3kux_A 80 HFPLAQSAL-AAGKHVVVDKPFTV-----TLSQANALK 111 (352) T ss_dssp HHHHHHHHH-HTTCEEEECSSCCS-----CHHHHHHHH T ss_pred HHHHHHHHH-HCCCCEECCCCCCC-----CCCCCHHHH T ss_conf 788888998-73987602698411-----233212456 No 199 >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Probab=27.77 E-value=33 Score=15.40 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=43.1 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE----------------------CHHHHHHHCCCCCEEE-ECHHHH Q ss_conf 68998568630889999999999844982688873----------------------3778987306788999-884478 Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG----------------------AYGAHYDIMGVYDLII-LAPQVR 61 (105) Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~----------------------~~~~~~~~~~~~DiiL-laPQv~ 61 (105) ||+++ ++|...+.++..+.+ ..+.++.|-.. ....+.+.+.++|+|+ ..|. . T Consensus 25 kIlvl-GaG~vG~~~~~~L~~---~~~~~i~v~~r~~~~a~~~~~~~~~~~~~~Dv~d~~~l~~~i~~~DiVI~~~p~-~ 99 (467) T 2axq_A 25 NVLLL-GSGFVAQPVIDTLAA---NDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPY-T 99 (467) T ss_dssp EEEEE-CCSTTHHHHHHHHHT---STTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCG-G T ss_pred EEEEE-CCCHHHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCEEEECCCH-H T ss_conf 19998-988899999999982---899349999699999999860269836998479989999986189999999881-3 Q ss_pred HHHHHHHHHHHHCCCCEEEEC Q ss_conf 889999998744289778718 Q T0580 62 SYYREMKVDAERLGIQIVATR 82 (105) Q Consensus 62 ~~~~~ik~~~~~~~ipv~~I~ 82 (105) +. ..+-+.|-+.|+.+..+. T Consensus 100 ~~-~~i~~~~i~~g~~~vd~~ 119 (467) T 2axq_A 100 FH-PNVVKSAIRTKTDVVTSS 119 (467) T ss_dssp GH-HHHHHHHHHHTCEEEECS T ss_pred HC-HHHHHHHHHCCCCEECCH T ss_conf 36-999999997499675040 No 200 >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Probab=27.74 E-value=33 Score=15.39 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=39.2 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 26899856863088999999999984498268887337789873067889998844788899999987442897787181 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRG 83 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~ 83 (105) -||++.++||--|..|+.-+.+.....+.. .+.++.+.-. +-|+-....+.++..|.++|+|+.+... T Consensus 25 ~kilvavSGG~DS~~Ll~~l~~~~~~~~~~-~v~~~~v~h~-----------~r~~s~~~~~~v~~~~~~~~i~~~~~~~ 92 (317) T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLK-EVALAHFNHM-----------LRESAERDEEFCKEFAKERNMKIFVGKE 92 (317) T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCS-EEEEEEEECC-----------SSTHHHHHHHHHHHHHHHHTCCEEEEEC T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHCCCC-EEEEEEECCC-----------CCCCHHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 969999808199999999999999877998-2999997289-----------9965599999999999972200012122 Q ss_pred H Q ss_conf 3 Q T0580 84 M 84 (105) Q Consensus 84 ~ 84 (105) . T Consensus 93 ~ 93 (317) T 1wy5_A 93 D 93 (317) T ss_dssp C T ss_pred H T ss_conf 1 No 201 >2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens} Probab=27.28 E-value=23 Score=16.29 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=10.3 Q ss_pred CEEEEEECCCCCHHH Q ss_conf 268998568630889 Q T0580 4 LKVLVLCAGSGTSAQ 18 (105) Q Consensus 4 ~kIlL~C~~G~STs~ 18 (105) -+||+.|.+|.|-|- T Consensus 82 ~~VlVhC~~G~~RS~ 96 (145) T 2nt2_A 82 SKCLVHSKMGVSRSA 96 (145) T ss_dssp CEEEEECSSSSSHHH T ss_pred CEEEEEECCCCCCCH T ss_conf 669998166676559 No 202 >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Probab=27.26 E-value=33 Score=15.34 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=23.6 Q ss_pred HHHHHHHHHCCCC-EEEEEECHHHH-HH-HCCCCCEEEECHH Q ss_conf 9999999844982-68887337789-87-3067889998844 Q T0580 21 NAINEGANLTEVR-VIANSGAYGAH-YD-IMGVYDLIILAPQ 59 (105) Q Consensus 21 ~km~~~a~~~~~~-~~i~A~~~~~~-~~-~~~~~DiiLlaPQ 59 (105) .-.++.++..|++ +++......+. .. ..+.+|+|+.-|= T Consensus 209 ~~a~~~a~~~gl~ni~~~~~d~~~~~~~~~~~~fD~v~~~pp 250 (373) T 2qm3_A 209 KFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373) T ss_dssp HHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC T ss_pred HHHHHHHHHCCCCCCEEEEEHHHCCCHHHCCCCCCEEEECCC T ss_conf 999999997099875599803513232540677719998898 No 203 >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Probab=27.18 E-value=34 Score=15.33 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=52.5 Q ss_pred EEECCCCC--HHHH-HHHHHHHHHHCCCCEEEEEECHH----HHHHHCCCCCEEEECHHHHHH-----HHHHHHHHHHCC Q ss_conf 98568630--8899-99999999844982688873377----898730678899988447888-----999999874428 Q T0580 8 VLCAGSGT--SAQL-ANAINEGANLTEVRVIANSGAYG----AHYDIMGVYDLIILAPQVRSY-----YREMKVDAERLG 75 (105) Q Consensus 8 L~C~~G~S--Ts~l-a~km~~~a~~~~~~~~i~A~~~~----~~~~~~~~~DiiLlaPQv~~~-----~~~ik~~~~~~~ 75 (105) .+|-+|.+ .|+| +..+-+.|++.+.+...--+++. +|.+...+..++++||--.-+ +...++.+.+.| T Consensus 113 ~v~i~~~~~~~sYlni~~Ii~iA~~~~~daIhPGyGflSEna~fA~~~~~aGi~fIGPs~~~i~~~GDK~~ar~la~~aG 192 (587) T 3jrx_A 113 YVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQ 192 (587) T ss_dssp EEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTT T ss_pred EEECCCCCHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCC T ss_conf 98728987342115999999999996929998687865659999999998799799969999998519598999999859 Q ss_pred CCEE Q ss_conf 9778 Q T0580 76 IQIV 79 (105) Q Consensus 76 ipv~ 79 (105) +|+. T Consensus 193 VPvv 196 (587) T 3jrx_A 193 VPTL 196 (587) T ss_dssp CCBC T ss_pred CCCC T ss_conf 9827 No 204 >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* Probab=26.97 E-value=34 Score=15.31 Aligned_cols=34 Identities=29% Similarity=0.151 Sum_probs=24.0 Q ss_pred CEEEEEECC----CCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 268998568----6308899999999998449826888 Q T0580 4 LKVLVLCAG----SGTSAQLANAINEGANLTEVRVIAN 37 (105) Q Consensus 4 ~kIlL~C~~----G~STs~la~km~~~a~~~~~~~~i~ 37 (105) -|||.+.++ |--|.-|++..-+.+++.+-+.+|. T Consensus 2 ~kIL~i~gS~r~~~S~s~~l~~~f~e~~~~~~~~~eV~ 39 (201) T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEIT 39 (201) T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEE T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 73999978889987789999999999999749999899 No 205 >3klb_A Putative flavoprotein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} Probab=26.96 E-value=13 Score=17.66 Aligned_cols=93 Identities=9% Similarity=0.073 Sum_probs=50.6 Q ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEE-EECHH-----------H--------------HHHHCCCCCEEE Q ss_conf 72689985686-308899999999998449826888-73377-----------8--------------987306788999 Q T0580 3 ELKVLVLCAGS-GTSAQLANAINEGANLTEVRVIAN-SGAYG-----------A--------------HYDIMGVYDLII 55 (105) Q Consensus 3 ~~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~-A~~~~-----------~--------------~~~~~~~~DiiL 55 (105) ..|||++-.+. .+|-.+|+.+.+.+.....++... .++.. . ....+.+||.|+ T Consensus 4 ~kKvlIvY~S~tGnT~~iA~~Ia~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~yD~ii 83 (162) T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGADLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKYEVLF 83 (162) T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGCSEEE T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEE T ss_conf 88599999899708999999999873866347775312466414466788877655302334653333244487588779 Q ss_pred EC---------HHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHH Q ss_conf 88---------4478889999998744289778718133101157988999999986 Q T0580 56 LA---------PQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 56 la---------PQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~~ 103 (105) +| |.++..+++. .-.|.+++..-. |++. +....++.+.+. T Consensus 84 lG~P~w~~~~~~~~~~fl~~~----~l~gK~v~~F~t--~g~~--~~g~~~~~~~~l 132 (162) T 3klb_A 84 VGFPVWWYIAPTIINTFLESY----DFAGKIVVPFAT--SGGS--GIGNCEKNLHKA 132 (162) T ss_dssp EEEECBTTBCCHHHHHHHHTS----CCTTCEEEEEEE--CSSC--CSHHHHHHHHHH T ss_pred EECCCCCCCCCHHHHHHHHHC----CCCCCEEEEEEE--CCCC--CCCHHHHHHHHH T ss_conf 842343577439999999847----989998999997--9999--988699999997 No 206 >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Probab=26.95 E-value=34 Score=15.31 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=40.7 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEECHHHH---------------HHHCCCCCEEEECHHHHHHHHHH Q ss_conf 2689985686-3088999999999984498268887337789---------------87306788999884478889999 Q T0580 4 LKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAYGAH---------------YDIMGVYDLIILAPQVRSYYREM 67 (105) Q Consensus 4 ~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~~~~~~---------------~~~~~~~DiiLlaPQv~~~~~~i 67 (105) |||.++ +.| |.+| |+..++ ++|.++.+.-.+.... .+...+.|+|+++--+....+-+ T Consensus 1 MKI~iI-G~G~mG~s-la~~L~----~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlIil~vP~~~~~~v~ 74 (279) T 2f1k_A 1 MKIGVV-GLGLIGAS-LAGDLR----RRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTL 74 (279) T ss_dssp CEEEEE-CCSHHHHH-HHHHHH----HTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHH T ss_pred CEEEEE-EECHHHHH-HHHHHH----HCCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCEEEEE T ss_conf 989999-00999999-999999----688979999899999999998599771268688851688898648753101221 Q ss_pred HHHHHHCCCCEEEEC Q ss_conf 998744289778718 Q T0580 68 KVDAERLGIQIVATR 82 (105) Q Consensus 68 k~~~~~~~ipv~~I~ 82 (105) ++.....+-...++| T Consensus 75 ~~l~~~~~~~~iv~D 89 (279) T 2f1k_A 75 EKLIPHLSPTAIVTD 89 (279) T ss_dssp HHHGGGSCTTCEEEE T ss_pred HHHHHHHCCHHEEEE T ss_conf 135544110110332 No 207 >3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} Probab=26.88 E-value=34 Score=15.30 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=55.9 Q ss_pred EEEEEECCC----C---CHHHHHHHHHHHHHHCCCCEEEEEECHH-H----HHHHC--CCCCEEEECHHHHHHHHHHHHH Q ss_conf 689985686----3---0889999999999844982688873377-8----98730--6788999884478889999998 Q T0580 5 KVLVLCAGS----G---TSAQLANAINEGANLTEVRVIANSGAYG-A----HYDIM--GVYDLIILAPQVRSYYREMKVD 70 (105) Q Consensus 5 kIlL~C~~G----~---STs~la~km~~~a~~~~~~~~i~A~~~~-~----~~~~~--~~~DiiLlaPQv~~~~~~ik~~ 70 (105) .|-+++..- . -.+-+.+-+++++.++|..+.+...... + ..+.+ ..+|.+++.|-.. ...+.+. T Consensus 24 ~Igvi~~~~~~~~~~~pf~~~l~~gi~~~a~~~g~~~~v~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~~ 101 (305) T 3huu_A 24 TIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLK--DDPIEHL 101 (305) T ss_dssp EEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBT--TCHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC--CHHHHHH T ss_conf 79999777653223797999999999999997599899996788759999999999838988899843678--7589999 Q ss_pred HHHCCCCEEEECCHHH----CCCCCCHHHHHHHHHHHC Q ss_conf 7442897787181331----011579889999999862 Q T0580 71 AERLGIQIVATRGMEY----IHLTKSPSKALQFVLEHY 104 (105) Q Consensus 71 ~~~~~ipv~~I~~~~Y----~~~~~dg~k~l~~i~~~l 104 (105) ..+.++|++.++.... .....|-.+.-..+.++| T Consensus 102 l~~~~ipvv~v~~~~~~~~~~~v~~d~~~~~~~~~~~L 139 (305) T 3huu_A 102 LNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYL 139 (305) T ss_dssp HHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHH T ss_pred HHHCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHH T ss_conf 99649997999504357887778507189999999999 No 208 >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Probab=26.62 E-value=34 Score=15.27 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=52.9 Q ss_pred CEEEEEECCCCCHHHHHH--HHHHHHHHCCCCEEEEEECHHHHHHHC---------------CCCCEEEECHHHHHHHHH Q ss_conf 268998568630889999--999999844982688873377898730---------------678899988447888999 Q T0580 4 LKVLVLCAGSGTSAQLAN--AINEGANLTEVRVIANSGAYGAHYDIM---------------GVYDLIILAPQVRSYYRE 66 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~--km~~~a~~~~~~~~i~A~~~~~~~~~~---------------~~~DiiLlaPQv~~~~~~ 66 (105) +++++.-+.-.+...+.. ++.++|.+.|+|+.++.+|.+.....- =..|++=+.+--. .+. T Consensus 116 V~~~v~~g~~~e~~~l~~~a~v~~ea~~~glP~~~~~yprg~~~~~~~d~~~i~~aar~a~eLGADiiK~~~~~~--~e~ 193 (273) T 2qjg_A 116 VSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYTGD--IDS 193 (273) T ss_dssp EEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCCSS--HHH T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC--HHH T ss_conf 999974489716999999999999999749947999733687766777889999999999997898786007999--899 Q ss_pred HHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 999874428977871813310115798899999998 Q T0580 67 MKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 67 ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) +++.++..++|+.+.-+. ..-+-+..|+.+.. T Consensus 194 ~~~vv~a~~~pvvv~gG~----~~~~~~~~l~~v~~ 225 (273) T 2qjg_A 194 FRDVVKGCPAPVVVAGGP----KTNTDEEFLQMIKD 225 (273) T ss_dssp HHHHHHHCSSCEEEECCS----CCSSHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEECCC----CCCCHHHHHHHHHH T ss_conf 999997189866998089----88999999999999 No 209 >2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein structure initiative, MCSG, structural genomics; HET: MSE; 2.01A {Streptococcus pneumoniae TIGR4} Probab=26.56 E-value=22 Score=16.44 Aligned_cols=34 Identities=9% Similarity=0.260 Sum_probs=20.8 Q ss_pred CCCCEEEEEEC--CCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 99726899856--86308899999999998449826 Q T0580 1 SKELKVLVLCA--GSGTSAQLANAINEGANLTEVRV 34 (105) Q Consensus 1 ~k~~kIlL~C~--~G~STs~la~km~~~a~~~~~~~ 34 (105) |-+|||-|... +..-..++.+.++++++++|.++ T Consensus 1 ~~~MKIal~~d~s~~~~~~~I~e~Lk~~l~~~G~eV 36 (216) T 2ppw_A 1 SNAMKIALINENSQASKNHIIYDSLKEATDKKGYQL 36 (216) T ss_dssp --CCEEEECCCTTTGGGHHHHHHHHHHHHHHHTCEE T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEE T ss_conf 998279984455126689999999999998479989 No 210 >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Probab=26.34 E-value=35 Score=15.24 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=20.5 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 26899856863088999999999984 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANL 29 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~ 29 (105) =|+++..+||.-||..+--+.++... T Consensus 241 kkVVvgLSGGVDSTV~AaLa~kAlG~ 266 (697) T 2vxo_A 241 SKVLVLLSGGVDSTVCTALLNRALNQ 266 (697) T ss_dssp CEEEEECCSSHHHHHHHHHHHHHSCG T ss_pred CCEEECCCCCCCHHHHHHHHHHHHCC T ss_conf 83686146887689999999996288 No 211 >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Probab=26.07 E-value=24 Score=16.22 Aligned_cols=32 Identities=6% Similarity=-0.004 Sum_probs=17.0 Q ss_pred HCCCCEEEECCHHH-----------CCCCCCHHHHHHHHHHHC Q ss_conf 42897787181331-----------011579889999999862 Q T0580 73 RLGIQIVATRGMEY-----------IHLTKSPSKALQFVLEHY 104 (105) Q Consensus 73 ~~~ipv~~I~~~~Y-----------~~~~~dg~k~l~~i~~~l 104 (105) +.+.|++.|+.... ...--+...++..++++| T Consensus 235 ~~~~~~viIN~e~~~~~~~~~~~~Dl~i~g~~~evl~~L~~~L 277 (289) T 1q1a_A 235 PRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 277 (289) T ss_dssp CTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHH T ss_pred HCCCCEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHC T ss_conf 6289789996988888765567656899687999999999981 No 212 >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Probab=26.02 E-value=35 Score=15.21 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=43.2 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC----H-HHHH------------H-HCCCCCEEEECHHHHHH Q ss_conf 972689985686308899999999998449826888733----7-7898------------7-30678899988447888 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA----Y-GAHY------------D-IMGVYDLIILAPQVRSY 63 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~----~-~~~~------------~-~~~~~DiiLlaPQv~~~ 63 (105) +-|||.++=-||..-|-|| +.+.++|.++...=.. . ..++ + ..++.|+|.++|-++.- T Consensus 18 ~g~~ih~iGigg~GmsalA----~~l~~~G~~V~gsD~~~~~~~~~~L~~~gi~i~~g~~~~~i~~~~d~vV~Sp~I~~~ 93 (524) T 3hn7_A 18 QGMHIHILGICGTFMGSLA----LLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRG 93 (524) T ss_dssp -CCEEEEETTTSHHHHHHH----HHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTT T ss_pred CCCEEEEEEECHHHHHHHH----HHHHHCCCEEEEEECCCCCHHHHHHHHCCCEEECCCCHHHCCCCCCEEEECCCCCCC T ss_conf 8988999967889999999----999968994999909999578999996899898488989959999789989954999 Q ss_pred HHHHHHHHHHCCCCEEEECC Q ss_conf 99999987442897787181 Q T0580 64 YREMKVDAERLGIQIVATRG 83 (105) Q Consensus 64 ~~~ik~~~~~~~ipv~~I~~ 83 (105) -+.++.. .+.|+|+..-+- T Consensus 94 ~p~~~~a-~~~~i~i~~~~e 112 (524) T 3hn7_A 94 MDVIEYM-LDTGLRYTSGPQ 112 (524) T ss_dssp SHHHHHH-HHHTCCEEEHHH T ss_pred CHHHHHH-HHCCCCEEEHHH T ss_conf 9999999-987997870999 No 213 >1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1 Probab=25.70 E-value=36 Score=15.17 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=45.8 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH------------------------------HHHHCCCC Q ss_conf 972689985686308899999999998449826888733778------------------------------98730678 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA------------------------------HYDIMGVY 51 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~------------------------------~~~~~~~~ 51 (105) +++||||+=.||.+.--...-+++..+.+|.++.+.....++ +-+..+.. T Consensus 18 ~k~~ILl~vTGsIAayk~~~li~~L~~~~g~~V~vi~T~sA~~fi~p~~l~~~~~~~~~~~~~~~~~~~~~~Hi~La~~a 97 (206) T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWA 97 (206) T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEECTGGGGSSCGGGSCSCEECHHHHHHTCSSTTSCCHHHHHHTTC T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC T ss_conf 88669999714899998999999987345988999978699856266530110358853120001345631466532326 Q ss_pred CEEEECHHHHHHHHHHHHH-----------HHHCCCCEEEECCH Q ss_conf 8999884478889999998-----------74428977871813 Q T0580 52 DLIILAPQVRSYYREMKVD-----------AERLGIQIVATRGM 84 (105) Q Consensus 52 DiiLlaPQv~~~~~~ik~~-----------~~~~~ipv~~I~~~ 84 (105) |+++++|-...-..++-.= +-..+.|+...|.+ T Consensus 98 DlivVaPaTANtiaK~A~GiaD~lltt~l~a~~~~kPvliaPaM 141 (206) T 1qzu_A 98 DLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAM 141 (206) T ss_dssp SEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCCTTSCCCEEECC T ss_pred CEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECC T ss_conf 77999106688999985776575999999974269977995178 No 214 >3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica} Probab=25.70 E-value=36 Score=15.17 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=11.3 Q ss_pred CCEEEEEECCCCCHH Q ss_conf 726899856863088 Q T0580 3 ELKVLVLCAGSGTSA 17 (105) Q Consensus 3 ~~kIlL~C~~G~STs 17 (105) .-+||+.|.+|.|-| T Consensus 87 ~~~VLVHC~~G~sRS 101 (161) T 3emu_A 87 KEGVLIISGTGVNKA 101 (161) T ss_dssp TCEEEEEESSSSSHH T ss_pred CCEEEEECCCCCCCH T ss_conf 853799841224214 No 215 >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Probab=25.63 E-value=36 Score=15.17 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=49.1 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE----CHHHHH---HHC--CCCCEEE-ECHHHHHHHHHHHHHHHH Q ss_conf 268998568630889999999999844982688873----377898---730--6788999-884478889999998744 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG----AYGAHY---DIM--GVYDLII-LAPQVRSYYREMKVDAER 73 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~----~~~~~~---~~~--~~~DiiL-laPQv~~~~~~ik~~~~~ 73 (105) -|+|++|..+.. .....++.+..+..|+.+...-. +...++ +.. .+.|+|+ +|= ..-.+-.|..+.. T Consensus 32 ~r~liVtd~~~~-~~~~~~v~~~L~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iiavGG--Gsv~D~aK~vA~~ 108 (370) T 1jq5_A 32 NKTVVIADEIVW-KIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG--GKTLDTAKAVADE 108 (370) T ss_dssp SEEEEEECHHHH-HHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES--HHHHHHHHHHHHH T ss_pred CEEEEEECCCHH-HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHC T ss_conf 938999897578-9999999999987799699998499999999999999987429988998468--6010020110020 Q ss_pred CCCCEEEECCH Q ss_conf 28977871813 Q T0580 74 LGIQIVATRGM 84 (105) Q Consensus 74 ~~ipv~~I~~~ 84 (105) .++|+..||.- T Consensus 109 ~~~p~i~IPTt 119 (370) T 1jq5_A 109 LDAYIVIVPTA 119 (370) T ss_dssp HTCEEEEEESS T ss_pred CCCCEEEEECC T ss_conf 47978997065 No 216 >1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} Probab=25.34 E-value=33 Score=15.36 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=12.9 Q ss_pred CCEEEEEECCCCCHHHH Q ss_conf 72689985686308899 Q T0580 3 ELKVLVLCAGSGTSAQL 19 (105) Q Consensus 3 ~~kIlL~C~~G~STs~l 19 (105) .-+||+.|.+|.|-|-. T Consensus 83 ~~~VlVHC~~G~~RS~~ 99 (165) T 1wrm_A 83 GESCLVHCLAGVSRSVT 99 (165) T ss_dssp TCEEEEECSSSSSHHHH T ss_pred CCCEEEECCCCCCCHHH T ss_conf 43057883344662599 No 217 >2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* Probab=25.18 E-value=37 Score=15.12 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=42.0 Q ss_pred CCEEEEEECC---CCCHHHHHHHHHHHHHH-CCCCEEEEEE---C-------------HHHHHHHCCCCCEEEEC----- Q ss_conf 7268998568---63088999999999984-4982688873---3-------------77898730678899988----- Q T0580 3 ELKVLVLCAG---SGTSAQLANAINEGANL-TEVRVIANSG---A-------------YGAHYDIMGVYDLIILA----- 57 (105) Q Consensus 3 ~~kIlL~C~~---G~STs~la~km~~~a~~-~~~~~~i~A~---~-------------~~~~~~~~~~~DiiLla----- 57 (105) .+||+.+|++ +-.|..|++.+.+.+.. .+.+++.-.. + ..++.+.+.+.|.++++ T Consensus 2 ~~~il~i~GS~r~~s~t~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~vv~~sP~Y~ 81 (197) T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYK 81 (197) T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBT T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCC T ss_conf 88499998999987659999999999875326977999973336677641257898999999999986998999627547 Q ss_pred ----HHHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf ----44788899999987442897787181 Q T0580 58 ----PQVRSYYREMKVDAERLGIQIVATRG 83 (105) Q Consensus 58 ----PQv~~~~~~ik~~~~~~~ipv~~I~~ 83 (105) ++++..++.+-... =.++|+..+-. T Consensus 82 ~s~~~~lK~~lD~l~~~~-l~~K~~~~v~~ 110 (197) T 2vzf_A 82 ASYTGLLKAFLDILPQFA-LAGKAALPLAT 110 (197) T ss_dssp TBCCHHHHHHHTTSCTTT-TTTCEEEEEEE T ss_pred CCCCHHHHHHHHHCCHHH-HCCCEEEEEEE T ss_conf 887999999999679155-38997999982 No 218 >2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Probab=25.12 E-value=37 Score=15.11 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=49.2 Q ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHH-HH---CCCCCEEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 972-68998568630889999999999844982688873377898-73---06788999884478889999998744289 Q T0580 2 KEL-KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY-DI---MGVYDLIILAPQVRSYYREMKVDAERLGI 76 (105) Q Consensus 2 k~~-kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~-~~---~~~~DiiLlaPQv~~~~~~ik~~~~~~~i 76 (105) |+. +|+++|.++. .-+.|++.|.++ ++-.++- +. .-+||.++-.|.+.-....+-....+. T Consensus 30 k~~~kv~Vfa~~~~--------~~~~A~~aGA~~----vG~~eli~kI~~g~~~~D~~iAt~~~m~~v~klg~iLGpk-- 95 (189) T 2ftc_A 30 SEINKVAVFTENAS--------EVKIAEENGAAF----AGGTSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKK-- 95 (189) T ss_pred CCEEEEEEECCCCH--------HHHHHHHCCCCE----ECHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCC-- T ss_conf 94479999907806--------799998779979----7508899999747754566875699999999988764223-- Q ss_pred CEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 77871813310115798899999998 Q T0580 77 QIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 77 pv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) .|..--+..+.|-.++++.... T Consensus 96 ----mPnpk~gTv~~di~~~v~~~k~ 117 (189) T 2ftc_A 96 ----YPKLSRNSIGRDIPKMLELFKN 117 (189) T ss_pred ----CCCCCCCCCCCCHHHHHHHHHC T ss_conf ----8999999878678999999856 No 219 >2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; plant enzymes, MEP pathway, isoprenoid-binding proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana} Probab=24.70 E-value=37 Score=15.06 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=34.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEE--CHHHHHHHHHHHHHHHH-CCCCE Q ss_conf 863088999999999984498268887337789873067889998--84478889999998744-28977 Q T0580 12 GSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIIL--APQVRSYYREMKVDAER-LGIQI 78 (105) Q Consensus 12 ~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLl--aPQv~~~~~~ik~~~~~-~~ipv 78 (105) .|++|..|.++..+..++.|.. +.+.|+.++ .|.+.-+.+++++..++ .++|. T Consensus 72 k~~~S~~lL~~~~~~l~~~g~~--------------I~NiD~tIi~e~PKi~p~~~~i~~~ls~lL~i~~ 127 (160) T 2pmp_A 72 KGAASSVFIKEAVRLMDEAGYE--------------IGNLDATLILQRPKISPHKETIRSNLSKLLGADP 127 (160) T ss_dssp SSCCHHHHHHHHHHHHHHHTEE--------------EEEEEEEEECSSSCCGGGHHHHHHHHHHHHTCCG T ss_pred CCCCHHHHHHHHHHHHHHCCCE--------------EEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 6998899999999999984985--------------9987799991687338899999999999969983 No 220 >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43 Probab=24.66 E-value=37 Score=15.06 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=41.8 Q ss_pred EEE-EEECCCCCHHHHHH------------HHHHHH----HHCCCCEEEEEECHHHHHHHCCCCCEEEEC---------H Q ss_conf 689-98568630889999------------999999----844982688873377898730678899988---------4 Q T0580 5 KVL-VLCAGSGTSAQLAN------------AINEGA----NLTEVRVIANSGAYGAHYDIMGVYDLIILA---------P 58 (105) Q Consensus 5 kIl-L~C~~G~STs~la~------------km~~~a----~~~~~~~~i~A~~~~~~~~~~~~~DiiLla---------P 58 (105) +|| +-|+.|..+..|++ +|-+.| ++++..+++......++. .-+.+|+|++. | T Consensus 44 ~iLDiGcGtG~~~~~l~~~g~~v~gvD~S~~mi~~a~~~~~~~~~~~~~~~~d~~~l~-~~~~fD~V~~~~~~~~~~~~~ 122 (252) T 1wzn_A 44 RVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FKNEFDAVTMFFSTIMYFDEE 122 (252) T ss_dssp EEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CCSCEEEEEECSSGGGGSCHH T ss_pred EEEEECCCCCHHHHHHHCCCEEEEEEEEECCCEEEECCCCCCCCCCCEEEEEECCCCC-CCCCCCHHHHHHHHHHCCCHH T ss_conf 9999678886667755315528999973112000000123334332013532010456-431322445332223317767 Q ss_pred HHHHHHHHHHHHHHHCCCCE Q ss_conf 47888999999874428977 Q T0580 59 QVRSYYREMKVDAERLGIQI 78 (105) Q Consensus 59 Qv~~~~~~ik~~~~~~~ipv 78 (105) +.+-.+.++.....+-|+=+ T Consensus 123 ~~~~~l~~~~~~LkpgG~li 142 (252) T 1wzn_A 123 DLRKLFSKVAEALKPGGVFI 142 (252) T ss_dssp HHHHHHHHHHHHEEEEEEEE T ss_pred HHHHHHHHHHHHCCCCCEEE T ss_conf 89999999999759882899 No 221 >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Probab=24.53 E-value=38 Score=15.04 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=49.2 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-------------------CHHHHHHHC--CCCCEEEECHHH Q ss_conf 97268998568630889999999999844982688873-------------------377898730--678899988447 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG-------------------AYGAHYDIM--GVYDLIILAPQV 60 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~-------------------~~~~~~~~~--~~~DiiLlaPQv 60 (105) |+|||.++=.|.++...+ .. +..+.-.+++.|. .+.++++.+ .++|+|+++=-- T Consensus 7 kpirv~iIG~G~~g~~~~-~~----~~~~~~~~~l~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~vD~v~I~tp~ 81 (346) T 3cea_A 7 KPLRAAIIGLGRLGERHA-RH----LVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPT 81 (346) T ss_dssp CCEEEEEECCSTTHHHHH-HH----HHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCG T ss_pred CCCEEEEECCHHHHHHHH-HH----HHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCH T ss_conf 975699998849999999-99----9854999689999879999999999982998525999999558999889992758 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH Q ss_conf 888999999874428977871813310115798899999998 Q T0580 61 RSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLE 102 (105) Q Consensus 61 ~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~ 102 (105) ..+.+-+.+. -+.|++|.+=-|.....- +.+++++.+.+ T Consensus 82 ~~H~~~~~~a-l~~gkhV~~EKP~a~~~~--e~~~l~~~a~~ 120 (346) T 3cea_A 82 PFHPEMTIYA-MNAGLNVFCEKPLGLDFN--EVDEMAKVIKS 120 (346) T ss_dssp GGHHHHHHHH-HHTTCEEEECSCCCSCHH--HHHHHHHHHHT T ss_pred HHHHHHHHHH-HHCCCEEEEECCCCCCCC--CCCHHHHHHHC T ss_conf 7789999999-864986988557422323--31011100002 No 222 >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Probab=24.29 E-value=21 Score=16.58 Aligned_cols=37 Identities=19% Similarity=0.053 Sum_probs=20.7 Q ss_pred CCCCEEEECHHHHH-HHHHHHHHHHHCCCCEEEECCHH Q ss_conf 67889998844788-89999998744289778718133 Q T0580 49 GVYDLIILAPQVRS-YYREMKVDAERLGIQIVATRGME 85 (105) Q Consensus 49 ~~~DiiLlaPQv~~-~~~~ik~~~~~~~ipv~~I~~~~ 85 (105) .++|+++.+-|=.+ .-..+...++..|+|..-=++.. T Consensus 75 ~~~d~vf~~~hG~~gedg~~q~~le~~gIpy~Gs~~~~ 112 (322) T 2fb9_A 75 ERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAA 112 (322) T ss_dssp TTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHH T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHCCCCEECCCHHH T ss_conf 38989999987865539899999998499876869889 No 223 >2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B Probab=24.29 E-value=35 Score=15.22 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=7.9 Q ss_pred EEEEEECCCCCHH Q ss_conf 6899856863088 Q T0580 5 KVLVLCAGSGTSA 17 (105) Q Consensus 5 kIlL~C~~G~STs 17 (105) +||+.|..|.|-| T Consensus 119 ~VLVHC~~G~sRS 131 (182) T 2j16_A 119 KILIHAQCGLSRS 131 (182) T ss_dssp CEEEEESSCCSHH T ss_pred EEEEECCCCCCHH T ss_conf 7999899998737 No 224 >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ... Probab=24.07 E-value=38 Score=14.99 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=46.7 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH--CCCCCEEEECHHH---HH--HHHHHHHHHHH Q ss_conf 99726899856863088999999999984498268887337789873--0678899988447---88--89999998744 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI--MGVYDLIILAPQV---RS--YYREMKVDAER 73 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~--~~~~DiiLlaPQv---~~--~~~~ik~~~~~ 73 (105) .|.+|||++-..-.+-.++..- ....|......|.+-.+..+. ...+|+|++-=++ .- ...++++.... T Consensus 2 dk~lriLiVDD~~~~~~~l~~~----L~~~g~~~v~~a~~g~~a~~~~~~~~~dlvi~D~~mP~~dG~el~~~ir~~~~~ 77 (128) T 1jbe_A 2 DKELKFLVVDDFSTMRRIVRNL----LKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAM 77 (128) T ss_dssp CTTCCEEEECSCHHHHHHHHHH----HHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CC T ss_pred CCCCEEEEEECCHHHHHHHHHH----HHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC T ss_conf 9999999996989999999999----998699569997999999999762899999996999999879999999975677 Q ss_pred CCCCEEEECCH Q ss_conf 28977871813 Q T0580 74 LGIQIVATRGM 84 (105) Q Consensus 74 ~~ipv~~I~~~ 84 (105) .++|+..+... T Consensus 78 ~~~piI~lt~~ 88 (128) T 1jbe_A 78 SALPVLMVTAE 88 (128) T ss_dssp TTCCEEEEESS T ss_pred CCCCEEEEECC T ss_conf 99928999898 No 225 >2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20 Probab=23.95 E-value=39 Score=14.98 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=34.9 Q ss_pred CCCEEEECH--------HHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHH Q ss_conf 788999884--------478889999998744289778718133101157988999999986 Q T0580 50 VYDLIILAP--------QVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEH 103 (105) Q Consensus 50 ~~DiiLlaP--------Qv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~~~ 103 (105) ..|++.+.| |||...+.+......-+.+|+.|+..++ ++.+..-+|=-.+|+ T Consensus 49 hpD~~~i~~e~~~I~Id~IR~l~~~~~~~~~~~~~KIvIIdead~--m~~~AaNALLKtLEE 108 (305) T 2gno_A 49 ASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKALEE 108 (305) T ss_dssp TTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHHHHS T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHH--CCHHHHHHHHHHHHC T ss_conf 997799707767799899999999985355358966999957554--399999999998628 No 226 >3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A Probab=23.93 E-value=36 Score=15.15 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=11.0 Q ss_pred CCEEEEEECCCCCHHH Q ss_conf 7268998568630889 Q T0580 3 ELKVLVLCAGSGTSAQ 18 (105) Q Consensus 3 ~~kIlL~C~~G~STs~ 18 (105) .-+||+.|.+|.|-|- T Consensus 81 ~~~VlVHC~~G~sRS~ 96 (144) T 3ezz_A 81 RGRVLVHSQAGISRSA 96 (144) T ss_dssp TCCEEEEESSSSSHHH T ss_pred CCEEEEECCCCCCCCH T ss_conf 7717887176777649 No 227 >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} Probab=23.93 E-value=39 Score=14.97 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=48.1 Q ss_pred CCCCEEEEEECCCCCHHHHHH-------------------HHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEECHH Q ss_conf 997268998568630889999-------------------999999844982688873377898730--67889998844 Q T0580 1 SKELKVLVLCAGSGTSAQLAN-------------------AINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILAPQ 59 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~-------------------km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLlaPQ 59 (105) |+.|||.++=.|.++. ..+. +.++.+++.+++ .+..+++.+ .+.|+|+++=- T Consensus 2 ~~~irvgiIG~G~~g~-~h~~~~~~~~~~~lvav~d~~~~~~~~~a~~~~i~------~~~~~~e~l~~~~iD~V~I~tp 74 (344) T 3euw_A 2 SLTLRIALFGAGRIGH-VHAANIAANPDLELVVIADPFIEGAQRLAEANGAE------AVASPDEVFARDDIDGIVIGSP 74 (344) T ss_dssp -CCEEEEEECCSHHHH-HHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCE------EESSHHHHTTCSCCCEEEECSC T ss_pred CCCEEEEEECCCHHHH-HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCC------EECCHHHHHCCCCCCEEEECCC T ss_conf 9866798999709999-99999970899589999889999999999983997------7898999954899886641121 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHH Q ss_conf 78889999998744289778718133101157988999999 Q T0580 60 VRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFV 100 (105) Q Consensus 60 v~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i 100 (105) -..+.+-++. +-+.|++|.+=-|..- |-+.+.+++ T Consensus 75 ~~~H~~~~~~-al~~gk~vl~EKPla~-----~~~ea~~l~ 109 (344) T 3euw_A 75 TSTHVDLITR-AVERGIPALCEKPIDL-----DIEMVRACK 109 (344) T ss_dssp GGGHHHHHHH-HHHTTCCEEECSCSCS-----CHHHHHHHH T ss_pred CHHHHHHHHH-HCCCCCCCCCCCCCHH-----HCCHHHHHH T ss_conf 0101233210-0122222213553101-----000024566 No 228 >3keg_A FMN-dependent NADH-azoreductase 1; Y131F azoreductase, methyl RED, flavoprotein, oxidoreductase; HET: FMN MRE GOL; 2.10A {Pseudomonas aeruginosa} PDB: 2v9c_A* Probab=23.73 E-value=39 Score=14.95 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=39.2 Q ss_pred CEEEEEECC----CCCHHHHHHHHHHHHHHCCCCEEEEEEC-----------------------------------HHHH Q ss_conf 268998568----6308899999999998449826888733-----------------------------------7789 Q T0580 4 LKVLVLCAG----SGTSAQLANAINEGANLTEVRVIANSGA-----------------------------------YGAH 44 (105) Q Consensus 4 ~kIlL~C~~----G~STs~la~km~~~a~~~~~~~~i~A~~-----------------------------------~~~~ 44 (105) .|||++.++ |--|.-|++...+.+++.+-+.+|+-.. ..++ T Consensus 2 ~kiL~I~~spr~~~S~s~~l~~~~~~~~~~~~~~~ev~~~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (212) T 3keg_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQL 81 (212) T ss_dssp CEEEEEECCSCSTTCHHHHHHHHHHHHHHHHSTTCEEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHTHHHHHH T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHH T ss_conf 75999974899887789999999999999729998899998711456676878885312786333358888888899999 Q ss_pred HHHCCCCCEEEEC---------HHHHHHHHHH Q ss_conf 8730678899988---------4478889999 Q T0580 45 YDIMGVYDLIILA---------PQVRSYYREM 67 (105) Q Consensus 45 ~~~~~~~DiiLla---------PQv~~~~~~i 67 (105) .+.+.+.|.|.++ .|++-..+.+ T Consensus 82 ~~~l~~AD~iV~~~Piy~~~~pa~lK~~iDrv 113 (212) T 3keg_A 82 VGELFDSDLLVISTPMYNFSVPSGLKAWIDQI 113 (212) T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHH T ss_pred HHHHHHCCEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 99998399899986874563898999999998 No 229 >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, PSI-2; 2.30A {Staphylococcus aureus subsp} Probab=23.59 E-value=39 Score=14.93 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=35.7 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE------------------CHHHHHHHCCCCCEEEECHH---HH Q ss_conf 7268998568630889999999999844982688873------------------37789873067889998844---78 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG------------------AYGAHYDIMGVYDLIILAPQ---VR 61 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~------------------~~~~~~~~~~~~DiiLlaPQ---v~ 61 (105) .|||+++=+|++. ++++-.+.+. |.++.+.+. ......+..+.+|+|+++-- +. T Consensus 2 ~MkI~IiGaGaiG-~~~a~~L~~~----g~~Vtl~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~DvIivavKa~~l~ 76 (294) T 3g17_A 2 SLSVAIIGPGAVG-TTIAYELQQS----LPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLD 76 (294) T ss_dssp -CCEEEECCSHHH-HHHHHHHHHH----CTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHH T ss_pred CCEEEEECCCHHH-HHHHHHHHHC----CCCEEEEECCHHHHHHCCCCCCCCCCEEECCHHHHCCCCCEEEEECCCCCHH T ss_conf 9999999968999-9999999955----9927999659999986588778875157458566057876899905975466 Q ss_pred HHHHHHHHHH Q ss_conf 8899999987 Q T0580 62 SYYREMKVDA 71 (105) Q Consensus 62 ~~~~~ik~~~ 71 (105) -..+.++... T Consensus 77 ~~~~~l~~~~ 86 (294) T 3g17_A 77 AVIPHLTYLA 86 (294) T ss_dssp HHGGGHHHHE T ss_pred HHHHHHHHHC T ss_conf 7766544303 No 230 >2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* Probab=23.57 E-value=39 Score=14.93 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=43.2 Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHH Q ss_conf 9999999844982688873377898730--67889998844788899999987442897787181331011579889999 Q T0580 21 NAINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQ 98 (105) Q Consensus 21 ~km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~ 98 (105) .+.++.+++.+++. .+.++++.+ .++|+|.++=-...+.+-+++.. +.|++|.+=-|.....- +.+++++ T Consensus 40 ~~~~~~~~~~~~~~-----~~~~~~~ll~~~~iD~v~I~tp~~~h~~~~~~al-~~gk~v~~EKP~~~~~~--e~~~l~~ 111 (334) T 2o4u_X 40 SRAKEFAQKHDIPK-----AYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCL-AAGKAVLCEKPMGVNAA--EVREMVT 111 (334) T ss_dssp HHHHHHHHHHTCSE-----EESSHHHHHTCTTCSEEEECCCGGGHHHHHHHHH-HTTCEEEECSSSSSSHH--HHHHHHH T ss_pred HHHHHHHHHCCCCC-----EECCHHHHHCCCCCCEEEEECCCCHHHHHHHHHH-HCCCCEECCCCCCCCCC--CCHHHHH T ss_conf 99999999839981-----5489999956999989999666422089999999-86992623798400121--2024444 Q ss_pred HHHH Q ss_conf 9998 Q T0580 99 FVLE 102 (105) Q Consensus 99 ~i~~ 102 (105) .+.+ T Consensus 112 ~a~~ 115 (334) T 2o4u_X 112 EARS 115 (334) T ss_dssp HHHH T ss_pred HHHH T ss_conf 5554 No 231 >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* Probab=23.39 E-value=40 Score=14.91 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=56.4 Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHH Q ss_conf 99999998449826888733778987306788999884478889999998744289778718133101157988999999 Q T0580 21 NAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFV 100 (105) Q Consensus 21 ~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i 100 (105) +-+++..++.|+++..+-....+++...+..|++.++.-....++=+++ +++.|+||.+=.++. + ..+..+.-+ T Consensus 160 ~iL~~vk~~~glpvvTdVh~~~~~~~~ae~vDvlQIpA~l~~n~dLL~a-~g~t~kpV~lKkg~~---~--s~~e~l~aa 233 (350) T 1vr6_A 160 EYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSK-AGSYNKPVLLKRGFM---N--TIEEFLLSA 233 (350) T ss_dssp HHHHHHHHHHTCEEEEECSSGGGHHHHHHHCSEEEECGGGTTCHHHHHH-HHTTCSCEEEECCTT---C--CHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHCEEEEEEECHHHCCCHHHHHH-HHCCCCCEEECCCCC---C--CHHHHHHHH T ss_conf 8888677535972488623134456563122579975122156899998-634687489617544---3--255544568 No 232 >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Probab=23.30 E-value=40 Score=14.90 Aligned_cols=78 Identities=9% Similarity=0.131 Sum_probs=43.7 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE-ECHHHHHHH--CCCCCEEEECHHHHHH-----HHHHHHHHH Q ss_conf 99726899856863088999999999984498268887-337789873--0678899988447888-----999999874 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS-GAYGAHYDI--MGVYDLIILAPQVRSY-----YREMKVDAE 72 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A-~~~~~~~~~--~~~~DiiLlaPQv~~~-----~~~ik~~~~ 72 (105) ++++|||++-..-..-.+ ++......|.. .+.+ .+-.+.-+. ...+|+|++-=++-.+ ...+++... T Consensus 4 ~~k~rVLiVDD~~~~~~~----l~~~L~~~g~~-~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~ 78 (129) T 1p6q_A 4 AEKIKVLIVDDQVTSRLL----LGDALQQLGFK-QITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPA 78 (129) T ss_dssp SSCCCEEEECSSHHHHHH----HHHHHHTTTCS-CEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTT T ss_pred CCCCEEEEEECCHHHHHH----HHHHHHHCCCE-EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCC T ss_conf 778889999499999999----99999987993-9999899999999997289989999458899987999999983855 Q ss_pred HCCCCEEEECC Q ss_conf 42897787181 Q T0580 73 RLGIQIVATRG 83 (105) Q Consensus 73 ~~~ipv~~I~~ 83 (105) ...+|+..+.. T Consensus 79 ~~~~piI~lt~ 89 (129) T 1p6q_A 79 TKKAAFIILTA 89 (129) T ss_dssp STTCEEEECCS T ss_pred CCCCEEEEEEE T ss_conf 68983999981 No 233 >1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens} Probab=23.11 E-value=39 Score=14.96 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=8.6 Q ss_pred EEEEEECCCCCHHH Q ss_conf 68998568630889 Q T0580 5 KVLVLCAGSGTSAQ 18 (105) Q Consensus 5 kIlL~C~~G~STs~ 18 (105) +||+.|.+|.|-|- T Consensus 85 ~VlVHC~~G~~RS~ 98 (149) T 1zzw_A 85 GLLIHCQAGVSRSA 98 (149) T ss_dssp EEEEECSSSSSHHH T ss_pred CEEEECCCCCCCHH T ss_conf 43668555556359 No 234 >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Probab=22.69 E-value=41 Score=14.83 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=34.1 Q ss_pred EEECCCCCHHHHH----------------HHHHHHHHHCCCC--EEEEEECHHHHHHHCCCCCEEEECHHHHH Q ss_conf 9856863088999----------------9999999844982--68887337789873067889998844788 Q T0580 8 VLCAGSGTSAQLA----------------NAINEGANLTEVR--VIANSGAYGAHYDIMGVYDLIILAPQVRS 62 (105) Q Consensus 8 L~C~~G~STs~la----------------~km~~~a~~~~~~--~~i~A~~~~~~~~~~~~~DiiLlaPQv~~ 62 (105) ++|+.|.-+-.++ ...++.++..|++ +++....+.++. ....+|+|++.|-... T Consensus 85 ~~~G~G~~~~~~a~~~~~V~~iD~~~~~i~~a~~n~~~~g~~~~i~~~~~D~~~~~-~~~~~D~i~~~pp~~~ 156 (241) T 3gdh_A 85 AFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG 156 (241) T ss_dssp TTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS T ss_pred CCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHH-HHCCCCEEEECCCCCC T ss_conf 32805999999997799899998968998888999998499701331204297751-4159868998998889 No 235 >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Probab=22.59 E-value=41 Score=14.82 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=59.8 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 99726899856863088999999999984498268887337789873067889998844788899999987442897787 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVA 80 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~ 80 (105) ++.||++++--.-- -++++.++++..+.++.+...+. +..+++|+|+.==-=..++..++. .. ..+|+.- T Consensus 27 ~~~~r~~~v~~~~~----~~kri~~~lk~~~~~~~~~~~~~----~~~e~~DlIi~iGGDGT~L~a~~~-~~-~~~PIlg 96 (278) T 1z0s_A 27 GGGMRAAVVYKTDG----HVKRIEEALKRLEVEVELFNQPS----EELENFDFIVSVGGDGTILRILQK-LK-RCPPIFG 96 (278) T ss_dssp ---CEEEEEESSST----THHHHHHHHHHTTCEEEEESSCC----GGGGGSSEEEEEECHHHHHHHHTT-CS-SCCCEEE T ss_pred CCEEEEEEEECCCH----HHHHHHHHHHHCCCEEEECCCCH----HHCCCCCEEEEECCCHHHHHHHHH-HC-CCCCEEE T ss_conf 10058999985764----89999999874385689838981----121279999998783999999998-18-9986899 Q ss_pred ECCHHHCCCCC----CHHHHHHHHHHH Q ss_conf 18133101157----988999999986 Q T0580 81 TRGMEYIHLTK----SPSKALQFVLEH 103 (105) Q Consensus 81 I~~~~Y~~~~~----dg~k~l~~i~~~ 103 (105) |+.---|+++. +-+..|+.+++. T Consensus 97 IN~G~lGFL~~~~~~~~~~~l~~~l~~ 123 (278) T 1z0s_A 97 INTGRVGLLTHASPENFEVELKKAVEK 123 (278) T ss_dssp EECSSSCTTCCBBTTBCHHHHHHHHHH T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 878999817568867899999986532 No 236 >3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* Probab=22.51 E-value=18 Score=16.90 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=18.6 Q ss_pred CEEEEEECC---CCCHHHHHHHHHHHHH Q ss_conf 268998568---6308899999999998 Q T0580 4 LKVLVLCAG---SGTSAQLANAINEGAN 28 (105) Q Consensus 4 ~kIlL~C~~---G~STs~la~km~~~a~ 28 (105) |||++++++ +-.|..|++.+.+.++ T Consensus 1 MKil~I~GS~r~~s~t~~l~~~~~~~~~ 28 (174) T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYH 28 (174) T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTT T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCC T ss_conf 9899998679988779999999984189 No 237 >3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} Probab=22.50 E-value=41 Score=14.81 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=36.2 Q ss_pred EEEEEECCCCCHHHHH---HH-HHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECH--HHHHHHHHHHHHHHHCCCCE Q ss_conf 6899856863088999---99-999998449826888733778987306788999884--47888999999874428977 Q T0580 5 KVLVLCAGSGTSAQLA---NA-INEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAP--QVRSYYREMKVDAERLGIQI 78 (105) Q Consensus 5 kIlL~C~~G~STs~la---~k-m~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaP--Qv~~~~~~ik~~~~~~~ipv 78 (105) +-+.+++.|.+-+.-. -| ++|.+..+...++..-+--+-+...-++.-++++.| ..+-...++.+.+.+.+.++ T Consensus 194 ~~~~~lG~G~~~g~A~E~aLKilkE~~~i~a~~~~~~Ef~HGP~~~v~~~~~vi~i~~~~~~~~~~~~~~~~~~~~g~~~ 273 (329) T 3eua_A 194 SIIYTMASGANYGVAYSYSICILMEMQWIHSHAIHAGEYFHGPFEIIDESVPFIILLGLDETRPLEERALTFSKKYGKKL 273 (329) T ss_dssp SBCEEEECGGGHHHHHHHHHTTTHHHHCCBCCEEETTGGGGTGGGGCCTTSCEEEEECSSTTHHHHHHHHHHHHHHCCCE T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEE T ss_conf 46888835753157888868999851750599834366544541002665532686478457899999999999629839 Q ss_pred EEECCHHHC Q ss_conf 871813310 Q T0580 79 VATRGMEYI 87 (105) Q Consensus 79 ~~I~~~~Y~ 87 (105) .+|+..++. T Consensus 274 ~vi~~~~~~ 282 (329) T 3eua_A 274 TVLDAASYD 282 (329) T ss_dssp EEEEGGGSC T ss_pred EEEECCCCC T ss_conf 999468755 No 238 >2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str} Probab=22.34 E-value=42 Score=14.79 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=41.3 Q ss_pred CCCEEEEEECCCCCH-HHHHHHHHHHHHHCCCCEEEEEECHHHHH-HH--CCCCCEEE Q ss_conf 972689985686308-89999999999844982688873377898-73--06788999 Q T0580 2 KELKVLVLCAGSGTS-AQLANAINEGANLTEVRVIANSGAYGAHY-DI--MGVYDLII 55 (105) Q Consensus 2 k~~kIlL~C~~G~ST-s~la~km~~~a~~~~~~~~i~A~~~~~~~-~~--~~~~DiiL 55 (105) +++.+-+.+..|-+. .-++..+++..++-|+++++.......+. +. -.+||+++ T Consensus 408 ~~l~l~l~~~~~~~~~~~~A~~i~~~L~~iGI~v~i~~~~~~~~~~~~~~~g~~D~~~ 465 (621) T 2grv_A 408 VPLTIVLGVASNDPTSVAVANTAADQLRNVGIDASVLALDPVALYGDALVNNRVDAVV 465 (621) T ss_dssp EECEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHTTTTTTCCSEEE T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCEEEE T ss_conf 2589999957999689999999999998469589999878699999987389945999 No 239 >2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA; 1.67A {Homo sapiens} Probab=22.31 E-value=35 Score=15.23 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=10.4 Q ss_pred CEEEEEECCCCCHHH Q ss_conf 268998568630889 Q T0580 4 LKVLVLCAGSGTSAQ 18 (105) Q Consensus 4 ~kIlL~C~~G~STs~ 18 (105) -+||+.|.+|.|-|- T Consensus 86 ~~VLVHC~~G~sRS~ 100 (151) T 2e0t_A 86 GKILVHCAVGVSRSA 100 (151) T ss_dssp CCEEEECSSSSHHHH T ss_pred CEEEEEECCCCCCCH T ss_conf 838998388887439 No 240 >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 Probab=22.00 E-value=42 Score=14.75 Aligned_cols=81 Identities=9% Similarity=0.074 Sum_probs=48.1 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH------CC--------CCEEEEEECHHHHHHHCCCCCEEEECH---HHHHHHH Q ss_conf 726899856863088999999999984------49--------826888733778987306788999884---4788899 Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANL------TE--------VRVIANSGAYGAHYDIMGVYDLIILAP---QVRSYYR 65 (105) Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~------~~--------~~~~i~A~~~~~~~~~~~~~DiiLlaP---Qv~~~~~ 65 (105) .-+|| +-++|--+.+.++.+.+.--. +. -++.+.+.++.+..+.+.++|+|+.|- +.-...+ T Consensus 167 ~~~vl-viGaGem~~~~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~~~~~~~l~~~l~~~DivIsaT~s~~~ii~~~ 245 (404) T 1gpj_A 167 DKTVL-VVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIHVD 245 (404) T ss_dssp TCEEE-EESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBCHH T ss_pred CCEEE-EEECCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEHHHHHHCCCCCCEEEEEECCCCCCCCHH T ss_conf 17489-99175788999999982797527897686767899887529189972465520045888999715898776666 Q ss_pred HHHHHHHHC--CCCEEEECCH Q ss_conf 999987442--8977871813 Q T0580 66 EMKVDAERL--GIQIVATRGM 84 (105) Q Consensus 66 ~ik~~~~~~--~ipv~~I~~~ 84 (105) .++...... ..|+..||-. T Consensus 246 ~~~~~~~~r~~~~pl~iiDLa 266 (404) T 1gpj_A 246 DVREALRKRDRRSPILIIDIA 266 (404) T ss_dssp HHHHHHHHCSSCCCEEEEECC T ss_pred HHHHHHHHCCCCCCEEEEEEC T ss_conf 688887412567986999805 No 241 >3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} Probab=21.73 E-value=43 Score=14.71 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=40.1 Q ss_pred CEEEEEECCCC-CHHHHHHHHHHHHHHCCCCEEEEEE---------CHHHHHHHCCCCCEEEEC---------HHHHHHH Q ss_conf 26899856863-0889999999999844982688873---------377898730678899988---------4478889 Q T0580 4 LKVLVLCAGSG-TSAQLANAINEGANLTEVRVIANSG---------AYGAHYDIMGVYDLIILA---------PQVRSYY 64 (105) Q Consensus 4 ~kIlL~C~~G~-STs~la~km~~~a~~~~~~~~i~A~---------~~~~~~~~~~~~DiiLla---------PQv~~~~ 64 (105) .|||++.+.=. .||-+++.+-+.+++.+-++++.-- ...+..+.+...|.|+++ ++++-.. T Consensus 2 ~KiLvI~ahP~~~~s~~~~~~~~~~~~~~~~v~~~dLy~~~~~~~~d~~~~~~~l~~aD~iV~~~P~~w~~~Pa~lK~~i 81 (192) T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWL 81 (192) T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCEEEEECCHHHCCCCHHHHHHH T ss_conf 76999981989235699999999999559987899802225897213899999998599999977746435768999999 Q ss_pred HHH Q ss_conf 999 Q T0580 65 REM 67 (105) Q Consensus 65 ~~i 67 (105) +.+ T Consensus 82 D~v 84 (192) T 3f2v_A 82 DEV 84 (192) T ss_dssp HHH T ss_pred HHH T ss_conf 998 No 242 >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Probab=21.70 E-value=26 Score=15.95 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=5.9 Q ss_pred EEEEEECCCCCHH Q ss_conf 6899856863088 Q T0580 5 KVLVLCAGSGTSA 17 (105) Q Consensus 5 kIlL~C~~G~STs 17 (105) ||+++.++|+||+ T Consensus 30 kIvvlTGAGISt~ 42 (361) T 1q14_A 30 KVIFMVGAGISTS 42 (361) T ss_dssp CEEEEECGGGTGG T ss_pred CEEEEECCCHHHH T ss_conf 6899928301052 No 243 >2a3n_A Putative glucosamine-fructose-6-phosphate aminotransferase; 16423107, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Salmonella typhimurium LT2} Probab=21.52 E-value=43 Score=14.69 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=42.8 Q ss_pred EEEEEECCCCCHHHH---H-HHHHHHHHHCCCCEEEEEECHHHH-----HHHCCCCCEEEECHHH--HHHHHHHHHHHHH Q ss_conf 689985686308899---9-999999984498268887337789-----8730678899988447--8889999998744 Q T0580 5 KVLVLCAGSGTSAQL---A-NAINEGANLTEVRVIANSGAYGAH-----YDIMGVYDLIILAPQV--RSYYREMKVDAER 73 (105) Q Consensus 5 kIlL~C~~G~STs~l---a-~km~~~a~~~~~~~~i~A~~~~~~-----~~~~~~~DiiLlaPQv--~~~~~~ik~~~~~ 73 (105) +-+.+.++|...+.. + .|++|.+.. +. .+.+..++ ...-++.-++++.|+= +...+.+.+...+ T Consensus 219 ~~~~~lG~G~~~~~a~~e~~lkl~E~~~i---~a--~~~~~~E~~HGP~~~i~~~~~vi~i~~~~~~~~~~~~~~~~~~~ 293 (355) T 2a3n_A 219 DYMMWVGGAEMWGEVYLFSMCILEEMQWK---RT--RPVSSAEFFHGALELLEKDVPLILVKGEGKCRALDERVERFASK 293 (355) T ss_dssp SCEEEEECGGGHHHHHHHHHHTHHHHHCC---CE--EEEEHHHHTTTGGGGCCTTCCEEEECCSSTTHHHHHHHHHHHHH T ss_pred CCCCEECCCCCEEHHHHHHHHHHHCCCCE---EE--EEECCCHHHCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHC T ss_conf 43312316765000988889987452643---56--77612233245401015676225753787079999999999976 Q ss_pred CCCCEEEECCHHHC Q ss_conf 28977871813310 Q T0580 74 LGIQIVATRGMEYI 87 (105) Q Consensus 74 ~~ipv~~I~~~~Y~ 87 (105) .+..+.+|+..++. T Consensus 294 ~~~~~~vi~~~~~~ 307 (355) T 2a3n_A 294 ITDNLVVIDPKAYA 307 (355) T ss_dssp HCSCEEEECGGGSC T ss_pred CCCEEEEEECCCCC T ss_conf 99879998178544 No 244 >2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli} Probab=21.50 E-value=43 Score=14.68 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=38.5 Q ss_pred CEEEEEECCCCCHHHHHHHHHH-HHHHCCCCEEEEEECHHH----------------------------H-HHHCCCCCE Q ss_conf 2689985686308899999999-998449826888733778----------------------------9-873067889 Q T0580 4 LKVLVLCAGSGTSAQLANAINE-GANLTEVRVIANSGAYGA----------------------------H-YDIMGVYDL 53 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~-~a~~~~~~~~i~A~~~~~----------------------------~-~~~~~~~Di 53 (105) +|||.+|.|-.--|-||..+-+ .+.+. .|.+++.+. + .+...++|+ T Consensus 9 ~~ILfVCtgN~cRSpmAE~i~~~~~~~~----~v~Sag~~~~~g~~~~~~a~~vl~~~Gid~~~h~s~~l~~~~~~~~Dl 84 (150) T 2wmy_A 9 DSILVICTGNICRSPIGERLLRRLLPSK----KINSAGVGALVDHTADESAIRVAEKNGLCLKGHRGTKFTSALARQYDL 84 (150) T ss_dssp CEEEEEESSSSSHHHHHHHHHHHHCTTS----EEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBCCHHHHTTCSE T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCC----CCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE T ss_conf 8089990895779999999999735336----866889853679989807899899809882201023443002456889 Q ss_pred EEECHHHHHHHHHHHHHHHH Q ss_conf 99884478889999998744 Q T0580 54 IILAPQVRSYYREMKVDAER 73 (105) Q Consensus 54 iLlaPQv~~~~~~ik~~~~~ 73 (105) ||.-= .....++.+.+.. T Consensus 85 Il~m~--~~~~~~l~~~~P~ 102 (150) T 2wmy_A 85 LLVME--YSHLEQISRIAPE 102 (150) T ss_dssp EEESC--HHHHHHHHHHCGG T ss_pred EEECC--HHHHHHHHHHCCC T ss_conf 99879--8899999976897 No 245 >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Probab=21.20 E-value=44 Score=14.65 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=39.8 Q ss_pred CCEEEEEECC-CCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHH---H---------HHHHHHHH Q ss_conf 7268998568-630889999999999844982688873377898730678899988447---8---------88999999 Q T0580 3 ELKVLVLCAG-SGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV---R---------SYYREMKV 69 (105) Q Consensus 3 ~~kIlL~C~~-G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv---~---------~~~~~ik~ 69 (105) +|||+|+--| |.-.| +++.+ +.-|.++.+... .+.+.++|.++| |=+ . ...+.++. T Consensus 2 ~mki~IID~g~gN~~S-v~~al----~~lg~~~~ii~~-----~~~l~~~D~lIl-PG~G~~~~~~~~l~~~~~~~~i~~ 70 (200) T 1ka9_H 2 RMKALLIDYGSGNLRS-AAKAL----EAAGFSVAVAQD-----PKAHEEADLLVL-PGQGHFGQVMRAFQESGFVERVRR 70 (200) T ss_dssp -CEEEEECSSCSCHHH-HHHHH----HHTTCEEEEESS-----TTSCSSCSEEEE-CCCSCHHHHHHTTSSSCTHHHHHH T ss_pred CCEEEEEECCCCHHHH-HHHHH----HHCCCCEEEECC-----HHHHHHCCEEEE-CCCCCHHHHHHHHHHCCCHHHHHH T ss_conf 9779999789858999-99999----987996999879-----899840898999-699847999877765593999888 Q ss_pred HHHHCCCCEEEE Q ss_conf 874428977871 Q T0580 70 DAERLGIQIVAT 81 (105) Q Consensus 70 ~~~~~~ipv~~I 81 (105) .. ..++|+.-| T Consensus 71 ~~-~~~~PILGI 81 (200) T 1ka9_H 71 HL-ERGLPFLGI 81 (200) T ss_dssp HH-HTTCCEEEC T ss_pred HH-HCCCCEEEE T ss_conf 88-669808998 No 246 >2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens} Probab=21.16 E-value=39 Score=14.92 Aligned_cols=13 Identities=31% Similarity=0.222 Sum_probs=6.3 Q ss_pred EEEEEECCCCCHH Q ss_conf 6899856863088 Q T0580 5 KVLVLCAGSGTSA 17 (105) Q Consensus 5 kIlL~C~~G~STs 17 (105) +||+.|.+|.|-| T Consensus 92 ~VLVHC~~G~~RS 104 (154) T 2r0b_A 92 KVLVHGNAGISRS 104 (154) T ss_dssp CEEEECSSSSSHH T ss_pred EEEEECCCCCCCC T ss_conf 2899868766322 No 247 >3ffr_A Phosphoserine aminotransferase SERC; YP_677612.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Probab=21.08 E-value=13 Score=17.78 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=34.7 Q ss_pred CCCEEEEEECCCCCHHHH--HHHHHHHHHH-CCCCEEEEEECHHHHHH-HCCCCCEEEECHH Q ss_conf 972689985686308899--9999999984-49826888733778987-3067889998844 Q T0580 2 KELKVLVLCAGSGTSAQL--ANAINEGANL-TEVRVIANSGAYGAHYD-IMGVYDLIILAPQ 59 (105) Q Consensus 2 k~~kIlL~C~~G~STs~l--a~km~~~a~~-~~~~~~i~A~~~~~~~~-~~~~~DiiLlaPQ 59 (105) ++.+++.+|....||+.+ ++.+.+.+++ ++..+-++|++..-... -..++|++..++| T Consensus 129 ~~~~~v~~~h~~t~tG~~~pi~~I~~~~~k~~~~l~~vDa~qs~g~~~iD~~~iD~~~~s~~ 190 (362) T 3ffr_A 129 ADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTKIDSVFFSVQ 190 (362) T ss_dssp TTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTSCSEEEEETT T ss_pred CCCCEEEEECCCCCCCEEECHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHCCEEEECCC T ss_conf 78765888534587654633154411110257824752565443434532011543572366 No 248 >3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311} Probab=21.08 E-value=44 Score=14.63 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=40.3 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHH------------------HHHHHCCCCCEEEECHHHHHH Q ss_conf 97268998568630889999999999844982688873377------------------898730678899988447888 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYG------------------AHYDIMGVYDLIILAPQVRSY 63 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~------------------~~~~~~~~~DiiLlaPQv~~~ 63 (105) +.-||+++=.|-|.+| ++.. .++++.+++|.++... ++.+...+.|+|+++--+.-. T Consensus 4 ~~k~I~IIG~GlmG~S-la~a----lk~~~~~~~V~~~D~~~~~~~~a~~~g~id~~~~~~~~~~~~~DlVIlavP~~~~ 78 (317) T 3dzb_A 4 SKKTIYIAGLGLIGGS-LALG----IKRDHPDYEILGYNRSDYSRNIALERGIVDRATGDFKEFAPLADVIILAVPIKQT 78 (317) T ss_dssp --CEEEESCCSHHHHH-HHHH----HHTTCTTSEEEEECSCHHHHHHHHHTCSCSEEESCHHHHGGGCSEEECCSCHHHH T ss_pred CCCEEEEEECCHHHHH-HHHH----HHHHCCCCEEEEEECCHHHHHHHHHCCCCCCHHCCHHHHHCCCCEEEEECCHHHH T ss_conf 8888999920889999-9999----9951999889999699999999998699750107898872448879983563565 Q ss_pred HHHHHHHHH Q ss_conf 999999874 Q T0580 64 YREMKVDAE 72 (105) Q Consensus 64 ~~~ik~~~~ 72 (105) .+-+++... T Consensus 79 ~~~l~~l~~ 87 (317) T 3dzb_A 79 MAYLKELAD 87 (317) T ss_dssp HHHHHHHTT T ss_pred HHHHHHHHH T ss_conf 778999864 No 249 >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Probab=20.80 E-value=19 Score=16.81 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=17.7 Q ss_pred HHHHCCCCEEEECCHH--H-----CCCCCCHHHHHHHHHHHC Q ss_conf 8744289778718133--1-----011579889999999862 Q T0580 70 DAERLGIQIVATRGME--Y-----IHLTKSPSKALQFVLEHY 104 (105) Q Consensus 70 ~~~~~~ipv~~I~~~~--Y-----~~~~~dg~k~l~~i~~~l 104 (105) .+.+.|.|++.|++.. | ...-.+...+|..++++| T Consensus 205 ~a~~~g~~vi~IN~~~t~~d~~~d~~i~g~a~evl~~l~~~l 246 (253) T 1ma3_A 205 IAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246 (253) T ss_dssp HHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHH T ss_pred HHHHCCCEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHH T ss_conf 999759939999999988888612899798999999999999 No 250 >1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translational repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Probab=20.76 E-value=45 Score=14.59 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=51.2 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH----------HCCCCCEEEECHHHHHHHHH-HHHH Q ss_conf 972689985686308899999999998449826888733778987----------30678899988447888999-9998 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD----------IMGVYDLIILAPQVRSYYRE-MKVD 70 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~----------~~~~~DiiLlaPQv~~~~~~-ik~~ 70 (105) ++.+|+++|.+ ...+.|++.|.++ ++..++.+ ...+||.++..|.+...... +-.. T Consensus 56 k~~kV~Vfa~~---------e~~~~Ak~aGa~~----vg~~el~~~~~~k~~~k~~~~~fd~~iAt~~~m~~l~k~lgki 122 (219) T 1i2a_A 56 KEAKIAVIGTG---------DLAKQAEELGLTV----IRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVI 122 (219) T ss_dssp SCCCEEEECCH---------HHHHHHHHTTCEE----ECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHH T ss_pred CCEEEEEEECC---------CCHHHHHHCCCCC----CCCHHHHHHHCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH T ss_conf 85089999277---------6658898738862----4815688875116677644045667997222788899987178 Q ss_pred HHHCCCCEEEECCHHHCCCCCCHHHHHHHHH Q ss_conf 7442897787181331011579889999999 Q T0580 71 AERLGIQIVATRGMEYIHLTKSPSKALQFVL 101 (105) Q Consensus 71 ~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~ 101 (105) ..+.|. .|.. ..+|-|-.++++.+. T Consensus 123 LGpkGl----MP~p--k~gT~di~~~i~~~k 147 (219) T 1i2a_A 123 LGPRGK----MPKP--VPANANIKPLVERLK 147 (219) T ss_dssp HGGGTC----CCEE--ECTTCCCHHHHHHHH T ss_pred HHHCCC----CCCC--CCCCCHHHHHHHHHH T ss_conf 886289----8876--766412678888874 No 251 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} Probab=20.67 E-value=45 Score=14.58 Aligned_cols=50 Identities=10% Similarity=-0.085 Sum_probs=31.5 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE---ECHHHHHHHCCCCCEEEECHHH Q ss_conf 26899856863088999999999984498268887---3377898730678899988447 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS---GAYGAHYDIMGVYDLIILAPQV 60 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A---~~~~~~~~~~~~~DiiLlaPQv 60 (105) ||||+... +.. ...+.+++.+.++.+.. .+..++.+.+.++|+++...+. T Consensus 1 MKIlit~~--~~~-----~~~~~L~~~~~ev~~~~~~~~~~~el~~~l~~~d~ii~~~~~ 53 (311) T 2cuk_A 1 MRVLVTRT--LPG-----KALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVED 53 (311) T ss_dssp CEEEESSC--CSS-----STTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTS T ss_pred CEEEEECC--CCH-----HHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCC T ss_conf 98999078--999-----999999847998998079989999999970898199988999 No 252 >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondrial; NAD dependent deacetylase, sirtuin, substrate peptide complex, hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Probab=20.64 E-value=29 Score=15.74 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=7.2 Q ss_pred EEEEEECCCCCH Q ss_conf 689985686308 Q T0580 5 KVLVLCAGSGTS 16 (105) Q Consensus 5 kIlL~C~~G~ST 16 (105) ||+++.++|+|| T Consensus 25 ~IvvlTGAGiSt 36 (285) T 3glr_A 25 RVVVMVGAGIST 36 (285) T ss_dssp CEEEEECGGGTG T ss_pred EEEEEECCCHHH T ss_conf 699993871112 No 253 >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Probab=20.61 E-value=45 Score=14.57 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=50.6 Q ss_pred EECCCC--CHHHH-HHHHHHHHHHCCCCEEEEEECHH----HHHHHCC--CCCEEEECHHHHHH-----HHHHHHHHHHC Q ss_conf 856863--08899-99999999844982688873377----8987306--78899988447888-----99999987442 Q T0580 9 LCAGSG--TSAQL-ANAINEGANLTEVRVIANSGAYG----AHYDIMG--VYDLIILAPQVRSY-----YREMKVDAERL 74 (105) Q Consensus 9 ~C~~G~--STs~l-a~km~~~a~~~~~~~~i~A~~~~----~~~~~~~--~~DiiLlaPQv~~~-----~~~ik~~~~~~ 74 (105) +|-+|. +.|+| ..++-+.|++.|.|...--+++- +|..... +..++++||...-. +...++.+.+. T Consensus 105 ~~i~~~~~~~sYl~~~~Ii~~A~~~~~daihPGyGfLSEn~~fa~~~~~a~~gi~fIGPs~~~i~~~gdK~~ar~la~~~ 184 (554) T 1w96_A 105 IEVPGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSA 184 (554) T ss_dssp EECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHT T ss_pred EECCCCCHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHCCHHHHHHHHCC T ss_conf 97489870001059999999999959799981864010299999999982699699897999999760605677765314 Q ss_pred CCCEE Q ss_conf 89778 Q T0580 75 GIQIV 79 (105) Q Consensus 75 ~ipv~ 79 (105) |+|+. T Consensus 185 GVPvi 189 (554) T 1w96_A 185 KVPCI 189 (554) T ss_dssp TCCBC T ss_pred CCCCC T ss_conf 67747 No 254 >3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Probab=20.56 E-value=45 Score=14.57 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=50.2 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECHH-----HHHHHC--CCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHH--- Q ss_conf 89999999999844982688873377-----898730--67889998844788899999987442897787181331--- Q T0580 17 AQLANAINEGANLTEVRVIANSGAYG-----AHYDIM--GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEY--- 86 (105) Q Consensus 17 s~la~km~~~a~~~~~~~~i~A~~~~-----~~~~~~--~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y--- 86 (105) +-+...+++.+.++|..+.+...... ++.+.+ ..+|.+++.|.-..... +.. ....++|++.++.... T Consensus 31 ~~l~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-~~~-~~~~~iPvV~~d~~~~~~~ 108 (303) T 3kke_A 31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDD-MLA-AVLEGVPAVTINSRVPGRV 108 (303) T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHH-HHH-HHHTTSCEEEESCCCTTCC T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHH-HHHCCCCEEEECCCCCCCC T ss_conf 99999999999976998999968999799999999999589788983245687599-999-9975998898168788878 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 01157988999999986 Q T0580 87 IHLTKSPSKALQFVLEH 103 (105) Q Consensus 87 ~~~~~dg~k~l~~i~~~ 103 (105) ....-|-......+.++ T Consensus 109 ~~V~~d~~~~~~~~~~~ 125 (303) T 3kke_A 109 GSVILDDQKGGGIATEH 125 (303) T ss_dssp CEEEECHHHHHHHHHHH T ss_pred CEEEECHHHHHHHHHHH T ss_conf 87996359999999999 No 255 >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Probab=20.51 E-value=45 Score=14.56 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=43.0 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEEC---HHHHH--HHHHHHHHHHHC-- Q ss_conf 97268998568630889999999999844982688873377898730678899988---44788--899999987442-- Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILA---PQVRS--YYREMKVDAERL-- 74 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLla---PQv~~--~~~~ik~~~~~~-- 74 (105) .-+|||++=..-..-.+ +++..+..|..+..-+.+...++.....||+|++- |...- ....+++..... T Consensus 6 ~g~rvLvVDD~~~~~~~----l~~~L~~~G~~v~~a~~g~eAl~~~~~~~dlil~D~~mP~~dG~el~~~ir~~~~~~~~ 81 (136) T 1dcf_A 6 TGLKVLVMDENGVSRMV----TKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRH 81 (136) T ss_dssp TTCEEEEECSCHHHHHH----HHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCS T ss_pred CCCEEEEEECCHHHHHH----HHHHHHHCCCEEEEECCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC T ss_conf 99999999388999999----99999987999999899999998605799889995889998889999999984400258 Q ss_pred -CCCEEEEC Q ss_conf -89778718 Q T0580 75 -GIQIVATR 82 (105) Q Consensus 75 -~ipv~~I~ 82 (105) .+|+..+. T Consensus 82 ~~~~Ii~~T 90 (136) T 1dcf_A 82 QRPLLVALS 90 (136) T ss_dssp CCCEEEEEE T ss_pred CCCEEEEEE T ss_conf 988799995 No 256 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=20.49 E-value=46 Score=14.56 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=44.9 Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHC--CCCCEEEEC---HHHHH--HHHHHHHHHHH Q ss_conf 997268998568630889999999999844982688873377898730--678899988---44788--89999998744 Q T0580 1 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIM--GVYDLIILA---PQVRS--YYREMKVDAER 73 (105) Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~--~~~DiiLla---PQv~~--~~~~ik~~~~~ 73 (105) +|..+||++...- .+...++...+..|..+.. |.+..+.-..+ ..+|+|++- |...- ..+.+++.. T Consensus 5 ~~~~~ILiVDDd~----~~~~~l~~~L~~~g~~v~~-a~~~~eal~~l~~~~~dlvilD~~mP~~~G~e~l~~ir~~~-- 77 (154) T 2rjn_A 5 YKNYTVMLVDDEQ----PILNSLKRLIKRLGCNIIT-FTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY-- 77 (154) T ss_dssp CSCCEEEEECSCH----HHHHHHHHHHHTTTCEEEE-ESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC-- T ss_pred CCCCEEEEEECCH----HHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHC-- T ss_conf 9999899996999----9999999999987998999-89999999999707999999669888888189999999838-- Q ss_pred CCCCEEEECCH Q ss_conf 28977871813 Q T0580 74 LGIQIVATRGM 84 (105) Q Consensus 74 ~~ipv~~I~~~ 84 (105) -++|+..+... T Consensus 78 ~~~piI~lt~~ 88 (154) T 2rjn_A 78 PDIERVVISGY 88 (154) T ss_dssp TTSEEEEEECG T ss_pred CCCCEEEEEEC T ss_conf 99798999834 No 257 >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2 Probab=20.32 E-value=46 Score=14.54 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=34.5 Q ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEEEEE-----CHHHHHH---HC--CCCCEEE Q ss_conf 2689985686-30889999999999844982688873-----3778987---30--6788999 Q T0580 4 LKVLVLCAGS-GTSAQLANAINEGANLTEVRVIANSG-----AYGAHYD---IM--GVYDLII 55 (105) Q Consensus 4 ~kIlL~C~~G-~STs~la~km~~~a~~~~~~~~i~A~-----~~~~~~~---~~--~~~DiiL 55 (105) -|+|++++.+ ...+-+++++.+..++.|+++.+... +...+.+ .. .+.|+|+ T Consensus 44 krvliVt~~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~II 106 (407) T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVL 106 (407) T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEE T ss_pred CEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEE T ss_conf 858999887578876299999999986599199986716999999999999986135887575 No 258 >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Probab=20.30 E-value=46 Score=14.54 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=48.9 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH-CCCCCEEEECHHHHH-----HHHHHHHHHHHCC Q ss_conf 9726899856863088999999999984498268887337789873-067889998844788-----8999999874428 Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI-MGVYDLIILAPQVRS-----YYREMKVDAERLG 75 (105) Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~-~~~~DiiLlaPQv~~-----~~~~ik~~~~~~~ 75 (105) .+-|||++-..-. ...-+++..+..|..+..-..+...+... ...||+|++.=.+-- ....+++...... T Consensus 5 p~prILiVDD~~~----~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~dlillD~~mP~~dG~el~~~ir~~~~~~~ 80 (140) T 3grc_A 5 PRPRILICEDDPD----IARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRD 80 (140) T ss_dssp CCSEEEEECSCHH----HHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTT T ss_pred CCCEEEEEECCHH----HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 9877999969999----999999999987999999899999999988504442104578899989999999984725799 Q ss_pred CCEEEECC Q ss_conf 97787181 Q T0580 76 IQIVATRG 83 (105) Q Consensus 76 ipv~~I~~ 83 (105) +|+..+.. T Consensus 81 iPiI~lt~ 88 (140) T 3grc_A 81 LAIVVVSA 88 (140) T ss_dssp CEEEEECT T ss_pred CCEEEEEC T ss_conf 97899956 No 259 >2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens} Probab=20.26 E-value=46 Score=14.53 Aligned_cols=84 Identities=10% Similarity=-0.028 Sum_probs=39.8 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 26899856863088999999999984498268887337789873067889998844788899999987442897787181 Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRG 83 (105) Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~ 83 (105) -+||+.|.+|.|=|-.+--.= .....|+++ ...+......--.+..-|.....+.++++..... .+...+.| T Consensus 88 ~~VLVHC~~G~~RS~~v~~aY-Lm~~~~~~~------~~A~~~vr~~Rp~i~pn~~f~~qL~~~e~~l~~~-~~~~~~~~ 159 (177) T 2oud_A 88 KGLLIHCQAGVSRSATIVIAY-LMKHTRMTM------TDAYKFVKGKRPIISPNLNFMGQLLEFEEDLNNG-VTPRILTP 159 (177) T ss_dssp CEEEEECSSSSSHHHHHHHHH-HHHTSCCCH------HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHHT-SSCCCCCT T ss_pred CEEEEECCCCCCCCHHHHHHH-HHHHHCCCH------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCC T ss_conf 748988888888559999999-999849799------9999999998997799989999999999996588-98886786 Q ss_pred HHHCCCCCCHHHHHHHH Q ss_conf 33101157988999999 Q T0580 84 MEYIHLTKSPSKALQFV 100 (105) Q Consensus 84 ~~Y~~~~~dg~k~l~~i 100 (105) ..+ ..+.+...+ T Consensus 160 ~~~-----~~~~~~~~~ 171 (177) T 2oud_A 160 KLM-----GVETVVKEA 171 (177) T ss_dssp TSC-----CHHHHHHHH T ss_pred CCC-----CCCHHHHHH T ss_conf 445-----773075664 No 260 >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Probab=20.25 E-value=29 Score=15.71 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=27.0 Q ss_pred HHCCCCCEEEE-------CHHHHHHHHHHHHHHHHCCCCEEEECCHH----H---CCCCCCHHHHHHHHHHHC Q ss_conf 73067889998-------84478889999998744289778718133----1---011579889999999862 Q T0580 46 DIMGVYDLIIL-------APQVRSYYREMKVDAERLGIQIVATRGME----Y---IHLTKSPSKALQFVLEHY 104 (105) Q Consensus 46 ~~~~~~DiiLl-------aPQv~~~~~~ik~~~~~~~ipv~~I~~~~----Y---~~~~~dg~k~l~~i~~~l 104 (105) +..++.|++|+ .|-.+ +-..+...|.|+..|++.. . ...-.+...+|..+.++| T Consensus 173 ~~~~~~DlllviGTSl~V~pa~~-----l~~~a~~~g~~vi~IN~~~t~~d~~~d~~i~g~a~e~l~~l~~~l 240 (249) T 1m2k_A 173 REVERADVIIVAGTSAVVQPAAS-----LPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240 (249) T ss_dssp HHHHHCSEEEEESCCSCSTTGGG-----HHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHH T ss_pred HHCCCCCEEEEECCCCEEEEHHH-----HHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHH T ss_conf 61447999999679975301204-----789999759859998899889998610999799999999999999 No 261 >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Probab=20.22 E-value=46 Score=14.54 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=42.9 Q ss_pred CCCEEEEE-ECCCCCHHHHHHHH------------HHHHHHC---CCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHH Q ss_conf 97268998-56863088999999------------9999844---98268887337789873067889998844788899 Q T0580 2 KELKVLVL-CAGSGTSAQLANAI------------NEGANLT---EVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYR 65 (105) Q Consensus 2 k~~kIlL~-C~~G~STs~la~km------------~~~a~~~---~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~ 65 (105) +-.+||-+ |+.|..|.+|++.. -+.|+++ .-.+.+..............||+|+++--+.+..+ T Consensus 70 ~g~~VLdIG~GtGy~ta~La~l~~~V~aie~~~~~~~~A~~~~~~~~nv~~~~gD~~~g~~~~~pfD~Iiv~~a~~~ip~ 149 (231) T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLC 149 (231) T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCH T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCHHHHHH T ss_conf 46428995698787799999974714540277999999999752455334424752206156668889887335124327 Q ss_pred HHHHHHHHCCCCEEEE Q ss_conf 9999874428977871 Q T0580 66 EMKVDAERLGIQIVAT 81 (105) Q Consensus 66 ~ik~~~~~~~ipv~~I 81 (105) .+.....+-|.=|..+ T Consensus 150 ~l~~~LkpGGrLV~pv 165 (231) T 1vbf_A 150 KPYEQLKEGGIMILPI 165 (231) T ss_dssp HHHHTEEEEEEEEEEE T ss_pred HHHHHCCCCCEEEEEE T ss_conf 8997538997899998 No 262 >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A Probab=20.00 E-value=47 Score=14.50 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=52.2 Q ss_pred EECCCC--CHHHH-HHHHHHHHHHCCCCEEEEEECHH----HHHHHCCCCCEEEECHHHHHH-----HHHHHHHHHHCCC Q ss_conf 856863--08899-99999999844982688873377----898730678899988447888-----9999998744289 Q T0580 9 LCAGSG--TSAQL-ANAINEGANLTEVRVIANSGAYG----AHYDIMGVYDLIILAPQVRSY-----YREMKVDAERLGI 76 (105) Q Consensus 9 ~C~~G~--STs~l-a~km~~~a~~~~~~~~i~A~~~~----~~~~~~~~~DiiLlaPQv~~~-----~~~ik~~~~~~~i 76 (105) +|-+|. +.|+| ..++-+.|++.+.+...-.+++. ++....++..+.++||-..-. +..+++.+.+.|+ T Consensus 98 ~~i~~~~~~~sYL~~~~Ii~iA~~~~~daIhPGYGflsEna~fA~~~~~~Gi~fIGPs~~~i~~~gDK~~ar~~a~~~gV 177 (540) T 3glk_A 98 VPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQV 177 (540) T ss_dssp EECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTC T ss_pred EECCCCCHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCCHHHHHHHHHCCC T ss_conf 97189972420059999999999969899982876636398999999987998999599999986195878999998399 Q ss_pred CEE Q ss_conf 778 Q T0580 77 QIV 79 (105) Q Consensus 77 pv~ 79 (105) |+. T Consensus 178 Pvv 180 (540) T 3glk_A 178 PTL 180 (540) T ss_dssp CBC T ss_pred CCC T ss_conf 907 Done!