Query T0580 lactose-specific IIB PTS system component, Streptococcus pneumoniae TIGR4, 105 residues
Match_columns 105
No_of_seqs 102 out of 385
Neff 5.8
Searched_HMMs 11830
Date Sun Jun 13 15:21:26 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0580.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0580.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02302 PTS_IIB: PTS system, 99.6 1.2E-15 9.8E-20 109.9 5.5 89 5-99 1-90 (90)
2 PF00532 Peripla_BP_1: family; 91.4 0.42 3.5E-05 24.8 8.3 87 16-104 16-113 (279)
3 PF03358 FMN_red: NADPH-depend 87.0 0.89 7.5E-05 22.9 7.6 94 4-101 1-123 (146)
4 PF01451 LMWPc: Low molecular 77.1 2 0.00017 20.9 5.1 35 4-40 1-35 (140)
5 PF01171 ATP_bind_3: PP-loop f 74.7 2.1 0.00018 20.8 4.7 67 5-84 1-67 (182)
6 PF10087 DUF2325: Uncharacteri 64.3 4.2 0.00036 19.0 4.6 66 19-84 11-84 (97)
7 PF00687 Ribosomal_L1: Ribosom 56.6 2.3 0.00019 20.6 2.0 65 2-75 57-123 (209)
8 PF00258 Flavodoxin_1: Flavodo 54.4 6.3 0.00054 17.9 5.6 97 7-103 1-116 (143)
9 PF02844 GARS_N: Phosphoribosy 53.9 4.6 0.00039 18.8 3.2 74 4-79 1-90 (100)
10 PF04392 ABC_sub_bind: ABC tra 51.8 7 0.00059 17.7 7.2 80 4-83 132-219 (294)
11 PF02502 LacAB_rpiB: Ribose/Ga 50.3 7.4 0.00063 17.5 4.3 61 5-72 59-120 (140)
12 PF03848 TehB: Tellurite resis 47.2 8.3 0.0007 17.3 5.3 78 8-86 37-140 (192)
13 PF06508 ExsB: ExsB; InterPro 47.1 8.3 0.0007 17.3 4.9 61 5-86 1-63 (137)
14 PF01408 GFO_IDH_MocA: Oxidore 42.7 9.7 0.00082 16.8 5.5 72 22-102 38-111 (120)
15 PF00205 TPP_enzyme_M: Thiamin 41.7 4.6 0.00039 18.7 1.6 53 5-57 13-85 (137)
16 PF03959 FSH1: Serine hydrolas 41.4 5.5 0.00046 18.3 2.0 40 1-40 2-44 (214)
17 PF00117 GATase: Glutamine ami 38.3 11 0.00097 16.4 5.5 63 19-81 9-78 (192)
18 PF00496 SBP_bac_5: Bacterial 35.0 13 0.0011 16.1 6.6 57 4-60 293-352 (372)
19 PF09353 DUF1995: Domain of un 34.1 13 0.0011 16.0 3.4 33 52-85 100-133 (209)
20 PF08967 DUF1884: Domain of un 33.6 14 0.0012 16.0 3.1 44 41-86 18-61 (85)
21 PF03059 NAS: Nicotianamine sy 31.2 12 0.0011 16.2 2.5 30 33-62 175-204 (275)
22 PF00865 Osteopontin: Osteopon 27.0 4.1 0.00035 19.0 -0.6 69 3-71 2-73 (312)
23 PF00899 ThiF: ThiF family; I 24.1 20 0.0017 15.0 5.9 63 22-84 60-126 (135)
24 PF06283 ThuA: Trehalose utili 22.1 22 0.0019 14.8 2.8 80 5-86 1-92 (212)
25 PF03702 UPF0075: Uncharacteri 21.6 23 0.0019 14.7 2.6 25 5-29 286-310 (364)
26 PF03054 tRNA_Me_trans: tRNA m 21.4 23 0.0019 14.7 4.4 73 4-86 1-73 (356)
27 PF00465 Fe-ADH: Iron-containi 20.5 24 0.002 14.6 4.6 51 5-55 23-83 (365)
No 1
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0005351 sugar:hydrogen ion symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 3czc_A 1vkr_A 2few_B 1vrv_A 2r48_A 2r4q_A 1tvm_A 1iib_B 1e2b_A 1h9c_A ....
Probab=99.56 E-value=1.2e-15 Score=109.92 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=76.6
Q ss_pred EEEEEECCCCCHHHHH-HHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 6899856863088999-999999984498268887337789873067889998844788899999987442897787181
Q T0580 5 KVLVLCAGSGTSAQLA-NAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRG 83 (105)
Q Consensus 5 kIlL~C~~G~STs~la-~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~ 83 (105)
||+++|++|++||+|+ +++++.+++.|+++++.+.+..+..+..+++|+|+++||++| ++++... ++|+.+|++
T Consensus 1 kilv~C~~Gi~TS~m~~~~ik~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~~~~--~~~~~~~---~~pv~vi~~ 75 (90)
T PF02302_consen 1 KILVACGSGIGTSFMLASKIKKALKKLGIDVEVSAVSIGEIEDISDDADLILTTPQLKY--KDLERFA---GKPVPVIPI 75 (90)
T ss_dssp EEEEEE----HHHHHHHHHHHHHHHHTTEEEEEEEEECCCCCHHHHC-SEEEEEETTGG--HHHHHHC---TTBEEEEET
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCEEEECCCCCH--HHHHHHC---CCEEEEEEC
T ss_conf 99999988078999999999999998698589996554223441579869999786414--6666433---870899851
Q ss_pred HHHCCCCCCHHHHHHH
Q ss_conf 3310115798899999
Q T0580 84 MEYIHLTKSPSKALQF 99 (105)
Q Consensus 84 ~~Y~~~~~dg~k~l~~ 99 (105)
..| ...+|+++++++
T Consensus 76 ~~~-~~~~d~~~il~q 90 (90)
T PF02302_consen 76 KNF-IDKMDGEEILKQ 90 (90)
T ss_dssp TTT-T-HHHHHHHHHH
T ss_pred HHH-HCCCCHHHHHCC
T ss_conf 585-271059989549
No 2
>PF00532 Peripla_BP_1: family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) , .; PDB: 3cs3_A 3g85_A 2qu7_A 3ctp_B 3e61_B 3hs3_B 2h0a_A 3d8u_B 3h5o_B 3e3m_B ....
Probab=91.38 E-value=0.42 Score=24.85 Aligned_cols=87 Identities=20% Similarity=0.134 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECH-HHHHH----H-CCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHCC-
Q ss_conf 88999999999984498268887337-78987----3-06788999884478889999998744289778718133101-
Q T0580 16 SAQLANAINEGANLTEVRVIANSGAY-GAHYD----I-MGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIH- 88 (105)
Q Consensus 16 Ts~la~km~~~a~~~~~~~~i~A~~~-~~~~~----~-~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~- 88 (105)
.+-+++-++++++++|.++.+...+. .+..+ . -.+.|.|++.|.-.. .+.+...... |+|++.++.....+
T Consensus 16 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vDgIIi~~~~~~-~~~l~~~~~~-gipvV~~~~~~~~~~ 93 (279)
T PF00532_consen 16 FSQLIEGIEQAAKEHGYDVIVINSNSDEDQEEQIENLISQKVDGIIIAPMDPD-DPALEKLAKK-GIPVVLVDRDSDSPD 93 (279)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEETTSHHHHHHHHHHHHTTESEEEEESSSTT-HHHHHHHHHS-TSCEEEESSSSSSSS
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHC-CCEEEEEECCCCCCC
T ss_conf 99999999999997599999947999789999999999679999999788322-0367899973-975999822455642
Q ss_pred ----CCCCHHHHHHHHHHHC
Q ss_conf ----1579889999999862
Q T0580 89 ----LTKSPSKALQFVLEHY 104 (105)
Q Consensus 89 ----~~~dg~k~l~~i~~~l 104 (105)
...|-.++-..+.++|
T Consensus 94 ~~~~v~~d~~~~g~~~~~~L 113 (279)
T PF00532_consen 94 GVPSVGSDNYQAGYLAAEYL 113 (279)
T ss_dssp SSEEEEEEHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHCCCEEHH
T ss_conf 04675034155202214216
No 3
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2). ; PDB: 2vzj_A 2vzf_A 2vzh_A 1x77_A 1rtt_A 3fvw_A 1t0i_B 2gsw_A 1nni_1 2fzv_C ....
Probab=86.99 E-value=0.89 Score=22.92 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=55.8
Q ss_pred CEEEEEECCC---CCHHHHHHHHHHHHHHCCCCEEEEEECH-----------------HHHHHHCCCCCEEEEC------
Q ss_conf 2689985686---3088999999999984498268887337-----------------7898730678899988------
Q T0580 4 LKVLVLCAGS---GTSAQLANAINEGANLTEVRVIANSGAY-----------------GAHYDIMGVYDLIILA------ 57 (105)
Q Consensus 4 ~kIlL~C~~G---~STs~la~km~~~a~~~~~~~~i~A~~~-----------------~~~~~~~~~~DiiLla------ 57 (105)
|||++++++- -.|..+++.+.+.+++.+.++++.-... .++.+.+.++|.++++
T Consensus 1 MKilii~gS~r~~g~t~~la~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~iI~~tPvy~~ 80 (146)
T PF03358_consen 1 MKILIINGSPRKNGNTEKLAEAVAEGLEEAGAEVEIIDLADYILPFCDGDWECPPDDMEELLEKIEEADAIIFGTPVYWG 80 (146)
T ss_dssp -EEEEEE---STT-HHHHHHHHHHHHHHHCTCEEEEEETTTSHHHHHTHSGGCTSHHHHHHHHHHHH-SEEEEEEEBSTT
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEECC
T ss_conf 98999989799987899999999998867799899948889788771455557988999999999978989995477358
Q ss_pred ---HHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHH
Q ss_conf ---44788899999987442897787181331011579889999999
Q T0580 58 ---PQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVL 101 (105)
Q Consensus 58 ---PQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~i~ 101 (105)
+|++..++.+. ...=.|+|+..+- ++....++..++....
T Consensus 81 ~~s~~lK~~iDr~~-~~~l~gK~~~~v~---~~~~~~g~~~~~~~l~ 123 (146)
T PF03358_consen 81 SMSGQLKNFIDRLS-RRELKGKPVAVVS---TGGGRRGGQRAIEHLR 123 (146)
T ss_dssp BB-HHHHHHHHTCH-TTTTTTCEEEEEE---EESSGCGHHHHHHHHH
T ss_pred CCCHHHHHHHHHCC-CHHCCCCEEEEEE---ECCCCHHHHHHHHHHH
T ss_conf 88889999999846-3021999999999---8889718999999999
No 4
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR000106 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation , . The PTP superfamily can be divided into four subfamilies : (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localization, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains Non-receptor (intracellular) PTPases All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif . Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates , . The structure of a LMW PTPase has been solved by X-ray crystallography and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein amino acid dephosphorylation; PDB: 1zgg_A 1y1l_C 1jl3_B 1z2e_A 2ipa_B 1z2d_A 1jfv_A 1lk0_B 2fxi_A 1lju_A ....
Probab=77.05 E-value=2 Score=20.87 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=28.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 2689985686308899999999998449826888733
Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA 40 (105)
Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~ 40 (105)
||||.+|.+-..-|-||..+-+..-... +++.+++
T Consensus 1 ~~vLFVC~~N~~RS~mAEai~~~~~~~~--~~v~SAG 35 (140)
T PF01451_consen 1 MKVLFVCTGNICRSPMAEAILRHLAGQR--VEVESAG 35 (140)
T ss_dssp EEEEEEESS-TSHHHHHHHHHHHHHHHT--EEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCC--EEEEECC
T ss_conf 9599995999742599999999724134--6898435
No 5
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This group of proteins belongs to the PP-loop superfamily . ; PDB: 2e89_B 2e21_C 1wy5_A 1ni5_A.
Probab=74.71 E-value=2.1 Score=20.78 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=36.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH
Q ss_conf 68998568630889999999999844982688873377898730678899988447888999999874428977871813
Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM 84 (105)
Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~ 84 (105)
||++.++||--|..|+.-+.+.....+.++.+-.+...- .+.-....+.+++.+..+|+|..+....
T Consensus 1 kilvavSGGkDS~~Ll~ll~~~~~~~~~~~~~~~vdh~~-------------~~~s~~~~~~v~~~~~~~gi~~~~~~~~ 67 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKDLNRRLGIKLIVVHVDHGI-------------RSESDEEAEFVEEYCEKLGIPLIIKRLD 67 (182)
T ss_dssp EEEEE-----HHHHHHHHHHHHCTTTT-EEEEEEE--SS-------------STCHHHHHHHHHHHHHHTT-EEEEE---
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-------------CCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999997677999999999999998679978999984788-------------8644489999999999819976999987
No 6
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325)
Probab=64.34 E-value=4.2 Score=18.96 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHCCCCEEEE------EECHHHHHHHCCCCCEEEE-CHHHHHH-HHHHHHHHHHCCCCEEEECCH
Q ss_conf 9999999998449826888------7337789873067889998-8447888-999999874428977871813
Q T0580 19 LANAINEGANLTEVRVIAN------SGAYGAHYDIMGVYDLIIL-APQVRSY-YREMKVDAERLGIQIVATRGM 84 (105)
Q Consensus 19 la~km~~~a~~~~~~~~i~------A~~~~~~~~~~~~~DiiLl-aPQv~~~-~~~ik~~~~~~~ipv~~I~~~ 84 (105)
+....++.+++.|...... .-....+...+.+.|+|++ -=.+.|- ...+++.|.++++|+......
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VI~~td~vsH~~~~~~k~~ak~~~~p~~~~~s~ 84 (97)
T PF10087_consen 11 RERNYRRLLEKYGGKFIHHGRDGGFEKKKSRLPSKIKRADLVIVFTDCVSHNAMWKAKKEAKKYGIPIVFSRSR 84 (97)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 25899999998699899995588875144656875589999999807669799999999999839958998898
No 7
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. The L1 protein contains two domains: 2-layer alpha/beta domain and a 3-layer alpha/beta domain (interrupts the first domain). In Escherichia coli, L1 is known to bind to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities , , groups: Eubacterial L1. Algal and plant chloroplast L1. Cyanelle L1. Archaebacterial L1. Vertebrate L10A. Yeast SSM1. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3fik_5 2gya_2 2gyc_2 487d_H 1mzp_A 1dwu_B 1u63_C 1cjs_A 1i2a_A 1s1i_A ....
Probab=56.57 E-value=2.3 Score=20.55 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=48.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH--HCCCCCEEEECHHHHHHHHHHHHHHHHCC
Q ss_conf 972689985686308899999999998449826888733778987--30678899988447888999999874428
Q T0580 2 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD--IMGVYDLIILAPQVRSYYREMKVDAERLG 75 (105)
Q Consensus 2 k~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~--~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ 75 (105)
+..+|+++|.+- ..+.|++.|.++...--....+.. ..++||++|.-|.+...+..+-....+.|
T Consensus 57 k~~~I~vf~~~~---------~~~~a~~~ga~~vg~~~~i~ki~~~~~~~~~d~fla~~~i~~~l~~LGkil~~r~ 123 (209)
T PF00687_consen 57 KDPKICVFAKDE---------YAEEAKEAGADYVGGDELIKKIKKKKKLDSFDLFLADPRIMPKLPKLGKILGPRG 123 (209)
T ss_dssp S-S-EEEE--CC---------HHHHHHHT--EBEE-TTHHHHHHHSHHHHHSSEEEEEGGGTTTHCC---HCCH--
T ss_pred CCCEEEEEECCH---------HHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCC
T ss_conf 977799991817---------7899997699855789999987432565447899988899999998887734166
No 8
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 1b1c_A 1ja1_B 1j9z_A 1ja0_A 1amo_B 3fjo_A 2bn4_B 2bf4_A 2bpo_A 1bvy_F ....
Probab=54.44 E-value=6.3 Score=17.94 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=54.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHH-HHCCCCCEEEEC-H-------HHH---HHHHHHHHHH---
Q ss_conf 998568630889999999999844982688873377898-730678899988-4-------478---8899999987---
Q T0580 7 LVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY-DIMGVYDLIILA-P-------QVR---SYYREMKVDA--- 71 (105)
Q Consensus 7 lL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~-~~~~~~DiiLla-P-------Qv~---~~~~~ik~~~--- 71 (105)
++..+...+|--+|+.+.+.+.++|+++.+......+.. +.+.++|.++++ | ... +..+-++...
T Consensus 1 I~Y~S~~G~Te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~~i~~~sT~~~G~~p~~~~~~~~~~~~~~~~~~ 80 (143)
T PF00258_consen 1 ILYGSQTGNTEKLAEAIAEGLRERGFEVDVVDLKDVDDTLEDLEEYDLVIFGVSTYGDGEPPDNAKKFFWDWLELFGKEL 80 (143)
T ss_dssp EEEE-SSSHHHHHHHHHHHHHHHCTCEEEEEEGGGSCHHGHHHHTTSEEEEEEEBETTCCBTGGHHHHHHHHHHHHHHGH
T ss_pred CEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 98997850799999999999977599559976788250499987432024882432689796101236899877540034
Q ss_pred ---HHCCCCEEEECCHHHCCCC-CCHHHHHHHHHHH
Q ss_conf ---4428977871813310115-7988999999986
Q T0580 72 ---ERLGIQIVATRGMEYIHLT-KSPSKALQFVLEH 103 (105)
Q Consensus 72 ---~~~~ipv~~I~~~~Y~~~~-~dg~k~l~~i~~~ 103 (105)
.-.+.++.+.-.-++.+.. ...-+.++..+++
T Consensus 81 ~~~~l~~~~~avfg~G~~~~~~f~~a~~~l~~~L~~ 116 (143)
T PF00258_consen 81 KNGNLKGKKFAVFGLGDSSYGGFCAAAKKLDERLKE 116 (143)
T ss_dssp GGSHHTTSEEEEEECBHTTSSTTTTTHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 542235752478735885421276999999999998
No 9
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 1gso_A 1vkz_B 2qk4_A 2ys6_A 2yrw_A 2ys7_A 2yrx_A 2ip4_B 2yw2_A 2yya_A ....
Probab=53.94 E-value=4.6 Score=18.76 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=38.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC--------------CCCEEEEEECHHHHHHHC--CCCCEEEECHHHHHHHHHH
Q ss_conf 268998568630889999999999844--------------982688873377898730--6788999884478889999
Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLT--------------EVRVIANSGAYGAHYDIM--GVYDLIILAPQVRSYYREM 67 (105)
Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~--------------~~~~~i~A~~~~~~~~~~--~~~DiiLlaPQv~~~~~~i 67 (105)
||||++=+|| --+-++.++.+.-.-. +..+.+......++.+.. +++|++.+||-- .+..-+
T Consensus 1 MkVLviGsGg-REHAla~~l~~S~~v~~v~~apGN~G~~~~~~~~~i~~~d~~~i~~~a~~~~idlvvvGPE~-pL~~Gl 78 (100)
T PF02844_consen 1 MKVLVIGSGG-REHALAWALAQSPRVDEVYVAPGNPGTARLAENVNIDITDIEEIVDFAKENNIDLVVVGPEA-PLVAGL 78 (100)
T ss_dssp EEEEE-------HHHHHHHHTTCTTEEEEEEE------TTTSEEE-S-TT-HHHHHHHHHHTTESEEE---HH-HHH---
T ss_pred CEEEEECCCH-HHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHH-HHHHHH
T ss_conf 9799987885-99999999962998788999289847776342117896899999999998499989989618-888767
Q ss_pred HHHHHHCCCCEE
Q ss_conf 998744289778
Q T0580 68 KVDAERLGIQIV 79 (105)
Q Consensus 68 k~~~~~~~ipv~ 79 (105)
...+.+.|+|+-
T Consensus 79 ~D~l~~~gi~vf 90 (100)
T PF02844_consen 79 ADALRAAGIPVF 90 (100)
T ss_dssp HHHHHH---TEE
T ss_pred HHHHHHCCCCEE
T ss_conf 999987899668
No 10
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 2qh8_A.
Probab=51.79 E-value=7 Score=17.69 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=53.7
Q ss_pred CEEEEEECCCCC-HHHHHHHHHHHHHHCCCCEEEEEEC-HHHH----HHHCCCCCEEEECHH--HHHHHHHHHHHHHHCC
Q ss_conf 268998568630-8899999999998449826888733-7789----873067889998844--7888999999874428
Q T0580 4 LKVLVLCAGSGT-SAQLANAINEGANLTEVRVIANSGA-YGAH----YDIMGVYDLIILAPQ--VRSYYREMKVDAERLG 75 (105)
Q Consensus 4 ~kIlL~C~~G~S-Ts~la~km~~~a~~~~~~~~i~A~~-~~~~----~~~~~~~DiiLlaPQ--v~~~~~~ik~~~~~~~ 75 (105)
-+|.++++.+-+ +...++.+++++++.|+.+.....+ ..+. ....++.|.+++.|. +......+...+.+++
T Consensus 132 k~igvly~~~~~~~~~~~~~~~~~a~~~gi~l~~~~v~~~~e~~~~~~~l~~~~dai~~~~d~~i~~~~~~i~~~~~~~~ 211 (294)
T PF04392_consen 132 KRIGVLYDPSEPNSVAQVEELKAAAKELGIELVEIPVSSSNEIEQALESLAKKVDAIFLPPDNTIASAMEAIAKLANKAK 211 (294)
T ss_dssp -EE-EEE----HHHHHHHHHHHHHHHH---EEEEEE-SSGGGHHHHHHHHGGG-SSEE--S-HHHHTT----HHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 68999978988546999999999999869879999658777899999973146778999888457879999999985379
Q ss_pred CCEEEECC
Q ss_conf 97787181
Q T0580 76 IQIVATRG 83 (105)
Q Consensus 76 ipv~~I~~ 83 (105)
+|+.....
T Consensus 212 iPv~~~~~ 219 (294)
T PF04392_consen 212 IPVFGFSD 219 (294)
T ss_dssp --EE---H
T ss_pred CCEEECCH
T ss_conf 98895578
No 11
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism . Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology .; GO: 0005975 carbohydrate metabolic process; PDB: 1o1x_A 2ppw_A 3c5y_N 1usl_D 2vvq_A 2vvo_C 2bes_C 2bet_D 2vvp_B 1nn4_C ....
Probab=50.27 E-value=7.4 Score=17.54 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=40.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH-HHHHCCCCCEEEECHHHHHHHHHHHHHHH
Q ss_conf 689985686308899999999998449826888733778-98730678899988447888999999874
Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIILAPQVRSYYREMKVDAE 72 (105)
Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~-~~~~~~~~DiiLlaPQv~~~~~~ik~~~~ 72 (105)
+-+++|+.|.-.|+.++|.+ |+-.-.-.-+++. ....-++..++-+|-.+--. +..+++++
T Consensus 59 ~GIliCGtGiG~~iaANK~~------GIrAa~~~d~~~A~~ar~hNnaNVL~lG~r~ig~-~~a~~i~~ 120 (140)
T PF02502_consen 59 RGILICGTGIGMSIAANKVP------GIRAALCHDPYSAKLAREHNNANVLCLGARVIGP-ELAKEIVD 120 (140)
T ss_dssp EEEEE-------HHHHHT-----------EEE-SSHHHHHHHHHCT--SEEEE-HHHHHH-HHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHCCC------CEEEEEECCHHHHHHHHHHCCCCEEEECHHHHCH-HHHHHHHH
T ss_conf 69999178776876754689------8799996879999999986499779865666289-99999999
No 12
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the core methyltransferase domain found in all TehB proteins.; PDB: 2i6g_B.
Probab=47.17 E-value=8.3 Score=17.26 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=51.7
Q ss_pred EEECCCCCHHHHH----------------HHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEE--------CHHHHHH
Q ss_conf 9856863088999----------------999999984498268887337789873067889998--------8447888
Q T0580 8 VLCAGSGTSAQLA----------------NAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIIL--------APQVRSY 63 (105)
Q Consensus 8 L~C~~G~STs~la----------------~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLl--------aPQv~~~ 63 (105)
|-|+.|--+-+|+ .++++.++++++++........+..- -++||+|+- .|++...
T Consensus 37 lgCG~GRNal~LA~~G~~VtavD~s~~ai~~l~~~a~~~~l~i~~~~~Dl~~~~~-~~~yD~I~s~vvf~fL~~~~~~~i 115 (192)
T PF03848_consen 37 LGCGSGRNALYLAQQGFDVTAVDISEEAIEKLKEIAEEEGLDIRTIVADLNEADL-DEEYDLILSTVVFMFLHRPLFPQI 115 (192)
T ss_dssp -------HHHHHHH----EEEEES-HHHHHHHHHHHHH---TEEEEE--TTT-------BSEEEEES-GGGS-GGG----
T ss_pred CCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCCCCEEEEEEEECCCCHHHHHHH
T ss_conf 1588988599999789959999799999999999998709830799854222576-677679987204114594789999
Q ss_pred HHHHHHHHHHCCCCE--EEECCHHH
Q ss_conf 999999874428977--87181331
Q T0580 64 YREMKVDAERLGIQI--VATRGMEY 86 (105)
Q Consensus 64 ~~~ik~~~~~~~ipv--~~I~~~~Y 86 (105)
.+.+++...+-|.-+ ..++..+|
T Consensus 116 i~~mk~~l~pGG~~li~~~~~~~d~ 140 (192)
T PF03848_consen 116 IANMKKALKPGGYNLIVTFMETDDY 140 (192)
T ss_dssp HHHHHHTB-----EEEEEEB--SSS
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 9999873778739999971345668
No 13
>PF06508 ExsB: ExsB; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr .; PDB: 3bl5_E 2pg3_A.
Probab=47.13 E-value=8.3 Score=17.25 Aligned_cols=61 Identities=23% Similarity=0.177 Sum_probs=36.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC--HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 689985686308899999999998449826888733--778987306788999884478889999998744289778718
Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA--YGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATR 82 (105)
Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~--~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~ 82 (105)
|.+++++||+-|+.++-..++. +. ++.|.. +++- -+-..+..++.++.+|++-.+|+
T Consensus 1 Kavvl~SGG~DSt~~l~~a~~~----~~--~v~altfdYGqr---------------~~~El~~a~~ia~~lgv~h~vid 59 (137)
T PF06508_consen 1 KAVVLFSGGLDSTTLLYLAKKE----GY--EVYALTFDYGQR---------------HRKELEAAKKIAEKLGVEHEVID 59 (137)
T ss_dssp EEEEE-----HHHHHHHHHHHH-----S--EEEEEEEESS-T---------------TCHHHHHHHHHHHH----EEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC----CC--EEEEEEEECCCC---------------CHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9899917858999999999985----99--699999988999---------------79999999999998299879955
Q ss_pred CHHH
Q ss_conf 1331
Q T0580 83 GMEY 86 (105)
Q Consensus 83 ~~~Y 86 (105)
...+
T Consensus 60 l~~l 63 (137)
T PF06508_consen 60 LSFL 63 (137)
T ss_dssp -GGC
T ss_pred HHHH
T ss_conf 1788
No 14
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 3cea_A 3ec7_D 3euw_A 3ezy_B 3e18_A 2p2s_A 3dty_B 1tlt_B 1xea_D 3bio_A ....
Probab=42.72 E-value=9.7 Score=16.85 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHCC--CCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHH
Q ss_conf 9999998449826888733778987306--78899988447888999999874428977871813310115798899999
Q T0580 22 AINEGANLTEVRVIANSGAYGAHYDIMG--VYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQF 99 (105)
Q Consensus 22 km~~~a~~~~~~~~i~A~~~~~~~~~~~--~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y~~~~~dg~k~l~~ 99 (105)
+.++.+++.+++ .+.++++..+ +.|++.++-....+.+-+.+.. +.|++|.+=.|..-..- +.+++++.
T Consensus 38 ~~~~~~~~~~~~------~~~~~~~~l~~~~~D~v~I~tp~~~h~~~~~~~l-~~g~~V~~EKPl~~~~~--e~~~l~~~ 108 (120)
T PF01408_consen 38 RAEAFAKEFGIP------VYTDLEELLEDPKIDAVIIATPPSSHAEIALAAL-EAGKHVLVEKPLALSLE--EAEELLEA 108 (120)
T ss_dssp HHHHHHHHTTSE------EESSHHHHHTHTTESEEEEES-GGGHHHHHHHHH-HCTCEEEEESSSSSSHH--HHHHHHHH
T ss_pred HHHHHHHHHCCC------CCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHH-HHCCEEEEECCCCCCHH--HHHHHHHH
T ss_conf 999999982997------4288999972558898999579534999999999-82997999858909999--99999999
Q ss_pred HHH
Q ss_conf 998
Q T0580 100 VLE 102 (105)
Q Consensus 100 i~~ 102 (105)
+.+
T Consensus 109 a~~ 111 (120)
T PF01408_consen 109 AKK 111 (120)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 15
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamin pyrophosphate binding; PDB: 1t9d_D 1jsc_A 1t9b_A 1n0h_B 1t9c_B 1t9a_A 1ybh_A 1z8n_A 1yhz_A 1yi0_A ....
Probab=41.70 E-value=4.6 Score=18.74 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=37.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-------------------HHHHHHHCCCCCEEE-EC
Q ss_conf 689985686308899999999998449826888733-------------------778987306788999-88
Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA-------------------YGAHYDIMGVYDLII-LA 57 (105)
Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~-------------------~~~~~~~~~~~DiiL-la 57 (105)
|.++++++|...+-....+++.+++.++|+-....+ .....+.+++.|+|| +|
T Consensus 13 rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlil~iG 85 (137)
T PF00205_consen 13 RPVILVGGGVRRSGAAEELRELAEKLGIPVVTTPMGKGAFPEDHPLYLGYLGMAGSPAANEALEEADLILAIG 85 (137)
T ss_dssp SEEEEE-HHHCHTTCHHHHHHHHHHHT-EEEEBGGGCCCSTTTSTTBEEB-SCCSGHHHHHHHHH-SEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
T ss_conf 9799989882633189999999998699989846656617999976266587767799999998299999988
No 16
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 The function of the proteins from this family is unknown.; PDB: 1ycd_A.
Probab=41.44 E-value=5.5 Score=18.32 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCCCEEEEEECCCCCHHHHHHHH---HHHHHHCCCCEEEEEEC
Q ss_conf 99726899856863088999999---99998449826888733
Q T0580 1 SKELKVLVLCAGSGTSAQLANAI---NEGANLTEVRVIANSGA 40 (105)
Q Consensus 1 ~k~~kIlL~C~~G~STs~la~km---~~~a~~~~~~~~i~A~~ 40 (105)
|++.|||.+++.|.|..+|..++ ++...+.+.++..--.|
T Consensus 2 ~~k~riLcLHG~~~n~~if~~q~~~lr~~l~~~~~~f~f~dgp 44 (214)
T PF03959_consen 2 SRKLRILCLHGYGQNAEIFRSQLSALRKALKKNGFEFVFVDGP 44 (214)
T ss_dssp ----EEEEE--------HHHHHT---HHHHHHTT-EEEEE--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9885599978998699999999999999860287899985898
No 17
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR000991 Glutamine amidotransferase (GATase) (2.4.2 from EC) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This activity is found in a range of biosynthetic enzymes, including glutamine amidotransferase, anthranilate synthase component II, p-aminobenzoate, and glutamine-dependent carbamoyl-transferase (CPSase). Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. On the basis of sequence similarities two classes of GATase domains have been identified , , class-I (also known as trpG-type) and class-II (also known as purF-type). Class-I GATase domains are defined by a conserved catalytic triad consisting of cysteine, histidine and glutamate. Class-I GPTase domains have been found in the following enzymes, the second component of anthranilate synthase and 4-amino-4-deoxychorismate (ADC) synthase; CTP synthase; GMP synthase; glutamine-dependent carbamoyl-phosphate synthase; phosphoribosylformylglycinamidine synthase II; and the histidine amidotransferase hisH. These signatures also detect peptidases belonging to MEROPS peptidase family C26 (gamma-glutamyl hydrolase), and non-peptidase homologs belonging to family C56 (PfpI endopeptidase) both of which are members of clan PC(C). Other members of family C56 are found in . ; GO: 0003824 catalytic activity; PDB: 1qdl_B 1i7s_B 1i7q_B 1i1q_B 2vxo_A 2vpi_B 2ywc_C 2ywb_A 1gpm_C 2a9v_D ....
Probab=38.29 E-value=11 Score=16.43 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHH--HCCCCCEEEECHHHHHHHH-----HHHHHHHHCCCCEEEE
Q ss_conf 9999999998449826888733778987--3067889998844788899-----9999874428977871
Q T0580 19 LANAINEGANLTEVRVIANSGAYGAHYD--IMGVYDLIILAPQVRSYYR-----EMKVDAERLGIQIVAT 81 (105)
Q Consensus 19 la~km~~~a~~~~~~~~i~A~~~~~~~~--~~~~~DiiLlaPQv~~~~~-----~ik~~~~~~~ipv~~I 81 (105)
+...+..++++.|.++++.......... ...++|.+++.|-..+-.+ ++-..+.+.++|+.-|
T Consensus 9 ~~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~dgiii~Gg~~~~~~~~~~~~~i~~~~~~~~PiLGI 78 (192)
T PF00117_consen 9 FTHSLARALRELGVEVEIVPVDSDDDEPLNDLDNFDGIIISGGPGSPYDIEKLIEIIREARERKKPILGI 78 (192)
T ss_dssp HHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTSSSEEEEE----TTTCHTTHHHHHHHHHHTTSEEE--
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 9999999999789958999899836655431159993999988986464545310122102454179998
No 18
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homolog proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; heme-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium strain NGR234 symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1b5i_A 1rkm_A 1b3l_A 1b51_A 1b40_A 1qkb_A 1jet_A 1b0h_A 1b2h_A 1b7h_A ....
Probab=35.04 E-value=13 Score=16.13 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=46.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECH-HHHHHH--CCCCCEEEECHHH
Q ss_conf 26899856863088999999999984498268887337-789873--0678899988447
Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAY-GAHYDI--MGVYDLIILAPQV 60 (105)
Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~-~~~~~~--~~~~DiiLlaPQv 60 (105)
..+++.+.+.-...-++..+++.+++-|+++++...+. ..+... ..++|+.+.+-+-
T Consensus 293 ~~~~~~~~~~~~~~~~a~~l~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~~d~~~~~w~~ 352 (372)
T PF00496_consen 293 PLILIYTSDSPPRDAIAEALAEQLKKIGIEVEVNPVDFNDDYDKRLSSGDFDLTLFGWGA 352 (372)
T ss_dssp EEEEEEEETSHHHHHHHHHHHHHHHH---EEEEEEE-HHHHHHHHHHTTS-SEEEEEEE-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 036862255620268999999986306228999985859999978766996889983478
No 19
>PF09353 DUF1995: Domain of unknown function (DUF1995)
Probab=34.09 E-value=13 Score=16.03 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=27.7
Q ss_pred CEEEECHHHHHHHHHHHHHHHHCCC-CEEEECCHH
Q ss_conf 8999884478889999998744289-778718133
Q T0580 52 DLIILAPQVRSYYREMKVDAERLGI-QIVATRGME 85 (105)
Q Consensus 52 DiiLlaPQv~~~~~~ik~~~~~~~i-pv~~I~~~~ 85 (105)
-+++++||-.. ++++++.++..+- |++.++|.-
T Consensus 100 ~~i~v~p~~~~-~~~ve~~~~~~~~rpvVllNp~l 133 (209)
T PF09353_consen 100 AFIVVAPQPSE-LEDVEKLCELAGDRPVVLLNPRL 133 (209)
T ss_pred EEEEEECCHHH-HHHHHHHHHHCCCCEEEEEECCC
T ss_conf 89999687652-99999999960897299995763
No 20
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2pk8_A.
Probab=33.61 E-value=14 Score=15.99 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 7789873067889998844788899999987442897787181331
Q T0580 41 YGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEY 86 (105)
Q Consensus 41 ~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~~Y 86 (105)
..+++...=+.|++|.||+.--.++. +..+-.+.+|..|+--.|
T Consensus 18 inELk~eG~ePDiiL~G~e~~ef~~~--~~l~~~~lkv~~ieELG~ 61 (85)
T PF08967_consen 18 INELKMEGFEPDIILVGPEFYEFLSE--EFLEVSNLKVYIIEELGY 61 (85)
T ss_dssp HHHHHH------EEEE--HHHHHHHH-----EETTEEEEE-TT---
T ss_pred HHHHHHCCCCCCEEEECHHHHHHCCH--HHHHHHCCEEEEHHHCCC
T ss_conf 99998658998769974899987308--888761865777876188
No 21
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II , . In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron . In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency .; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process
Probab=31.18 E-value=12 Score=16.22 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=21.7
Q ss_pred CEEEEEECHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 268887337789873067889998844788
Q T0580 33 RVIANSGAYGAHYDIMGVYDLIILAPQVRS 62 (105)
Q Consensus 33 ~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~ 62 (105)
.+.+......+......+||+|++|-++..
T Consensus 175 ~m~f~t~d~~~~~~~l~~yDvV~lAALVgm 204 (275)
T PF03059_consen 175 RMSFITGDEMDVTLDLKEYDVVFLAALVGM 204 (275)
T ss_pred CEEEEECCCCCCCCCCCCCCEEEEHHHCCC
T ss_conf 657885353234444344788875532254
No 22
>PF00865 Osteopontin: Osteopontin; InterPro: IPR002038 The major event of endochondrial ossification is the proteolytic degradation of calcified cartilage and the extracellular matrix, and their substitution with bone-specific extracellular matrix produced and organised by osteoblasts . One of the most abundant products of osteoblasts is osteopontin, a glycosylated phosphoprotein with a high acidic amino acid content and one copy of the cell attachment sequence RGD . It is thought that osteopontin may act as a bridge between osteoblasts and the apatite mineral of the bone . Osteopontin-K is a kidney protein, similar to osteopontin and probably also involved in cell adhesion ; GO: 0001503 ossification, 0007155 cell adhesion; PDB: 3cxd_P 3dsf_P.
Probab=26.97 E-value=4.1 Score=19.03 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHH---HHHHHHH
Q ss_conf 72689985686308899999999998449826888733778987306788999884478889---9999987
Q T0580 3 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYY---REMKVDA 71 (105)
Q Consensus 3 ~~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~---~~ik~~~ 71 (105)
++-|+.+|-.|+.+.+=|+-..-...+....+.-.--++.-.-.--.-.+..+||||-.+-- +++++.+
T Consensus 2 riAvicfcl~gia~a~PvK~adSgSSEEk~~~~k~~davat~l~pdpsQkq~~lApqn~~sSeEtdD~kq~t 73 (312)
T PF00865_consen 2 RIAVICFCLFGIASALPVKVADSGSSEEKQLYNKHPDAVATWLKPDPSQKQNLLAPQNSVSSEETDDFKQET 73 (312)
T ss_dssp ------------------------------------------SSSS--------------------------
T ss_pred CEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 355317998887762433114677621244332373100023688713445543335555421135310014
No 23
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) , activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1jwa_B 1jwb_B 1jw9_B 1zfn_A 1zud_1 1zkm_A 3h9g_A 3h9q_C 3h5r_C 3h5n_C ....
Probab=24.15 E-value=20 Score=15.00 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=37.9
Q ss_pred HHHHHHHHCCCCEEEEEEC----HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCH
Q ss_conf 9999998449826888733----77898730678899988447888999999874428977871813
Q T0580 22 AINEGANLTEVRVIANSGA----YGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGM 84 (105)
Q Consensus 22 km~~~a~~~~~~~~i~A~~----~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~~ 84 (105)
.+++.+++.+-...+.+.+ .....+...++|+|+.+-.-..-...+.+.+.+.++|+......
T Consensus 60 ~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~d~Vv~~~d~~~~~~~l~~~~~~~~~~~i~~~~~ 126 (135)
T PF00899_consen 60 ALAERLKRINPDVKIEAIPKNIDEENIDELLKNFDLVVDCVDNFEARKLLNEYCRKHGIPFIDGGVS 126 (135)
T ss_dssp HHHHHHHHHSTTSEEEEEESHCSHHHHHHHHCTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEE--B
T ss_pred HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9888788750762899994467566787652369799986899999999999999879989999673
No 24
>PF06283 ThuA: Trehalose utilisation; InterPro: IPR009381 This family consists of several bacterial ThuA like proteins. The function of the family is unknown.; PDB: 1t0b_A.
Probab=22.09 E-value=22 Score=14.76 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=40.3
Q ss_pred EEEEEECC--CCCHH---HHHHHHHHHHHHCCCCEEEEEECHHH-HH-HHCCCCCEEEECHHH----H-HHHHHHHHHHH
Q ss_conf 68998568--63088---99999999998449826888733778-98-730678899988447----8-88999999874
Q T0580 5 KVLVLCAG--SGTSA---QLANAINEGANLTEVRVIANSGAYGA-HY-DIMGVYDLIILAPQV----R-SYYREMKVDAE 72 (105)
Q Consensus 5 kIlL~C~~--G~STs---~la~km~~~a~~~~~~~~i~A~~~~~-~~-~~~~~~DiiLlaPQv----~-~~~~~ik~~~~ 72 (105)
|||++-++ |.... -...-+++.+++ +..+++....-.+ +. +.+++||+|.+-=.- . -..+.+++..
T Consensus 1 kVLv~~g~~~g~~h~~~~~~~~~l~~l~~~-~~~~~v~~~~d~~~~~~~~L~~~D~vv~~~~~~~~~~~~~~~~l~~~v- 78 (212)
T PF06283_consen 1 KVLVFSGTWPGYRHDSIPAGAPMLAQLLEK-NGGFEVTVTEDPDKFTPENLKDYDVVVFYNTFGDVLDPEQRAALEDYV- 78 (212)
T ss_dssp EEEEEE--SHHHH-H-----HHHHHHHHHH---EEEEEETTSTT---HHHHHT-SEEEEE---GGGS-HHHHHHHHHHH-
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH-
T ss_conf 999996886875788589999999998554-898799996381018974736888999959999989999999999999-
Q ss_pred HCCCCEEEECCHHH
Q ss_conf 42897787181331
Q T0580 73 RLGIQIVATRGMEY 86 (105)
Q Consensus 73 ~~~ipv~~I~~~~Y 86 (105)
+.|.+++.+-....
T Consensus 79 ~~Ggg~v~~H~a~~ 92 (212)
T PF06283_consen 79 KAGGGLVGLHSATH 92 (212)
T ss_dssp H-----EEE-----
T ss_pred HCCCCEEEEECCCC
T ss_conf 85998999954663
No 25
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 The proteins is this family are about 370 amino acids long and have no known function.; PDB: 3cqy_B.
Probab=21.60 E-value=23 Score=14.70 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=16.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 6899856863088999999999984
Q T0580 5 KVLVLCAGSGTSAQLANAINEGANL 29 (105)
Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~ 29 (105)
.-+++|+||.--..|++.+++....
T Consensus 286 ~~v~v~GGGa~N~~Lm~~L~~~l~~ 310 (364)
T PF03702_consen 286 DEVLVCGGGAHNPFLMERLQERLPN 310 (364)
T ss_dssp --EEEE------HHHHHHHHHH---
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 5699957986788999999966899
No 26
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2der_A 2deu_A 2det_A 2hma_A.
Probab=21.35 E-value=23 Score=14.67 Aligned_cols=73 Identities=18% Similarity=0.001 Sum_probs=44.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 26899856863088999999999984498268887337789873067889998844788899999987442897787181
Q T0580 4 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRG 83 (105)
Q Consensus 4 ~kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A~~~~~~~~~~~~~DiiLlaPQv~~~~~~ik~~~~~~~ipv~~I~~ 83 (105)
|||++.=+||--||.-|--+++. |. +|.+.-..-... .++.+ -.-......++.+..|+..|||..++|-
T Consensus 1 ~rV~vamSGGVDSsvaa~LL~e~----G~--~V~gv~m~~~~~-~~~~~---~~C~~~~d~~da~~va~~LgIp~~v~d~ 70 (356)
T PF03054_consen 1 KRVAVAMSGGVDSSVAAALLKEQ----GY--DVIGVTMRNWDD-EDEPG---GSCCSEEDIEDARKVAEQLGIPHYVVDL 70 (356)
T ss_dssp -EEE-------HHHHHHHHHHH---------EEE--EEE-SS------H----HHHHHHHHHHHHHHHHH------EEET
T ss_pred CEEEEECCCCHHHHHHHHHHHHH----CC--CCEEEEEEEECC-CCCCC---CCCCCHHHHHHHHHHHHHCCCCEEEECH
T ss_conf 94999836778999999999972----87--740699999616-77666---6787466799999999986998899887
Q ss_pred HHH
Q ss_conf 331
Q T0580 84 MEY 86 (105)
Q Consensus 84 ~~Y 86 (105)
.+-
T Consensus 71 ~~~ 73 (356)
T PF03054_consen 71 REE 73 (356)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 27
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD . Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) , as well as in Zymomonas mobilis (gene adhB) . These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) , an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) , an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE , an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) . Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) . E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0008152 metabolic process; PDB: 2bl4_B 1rrm_B 2bi4_A 3bfj_L 1vlj_A 1oj7_D 1vhd_A 1o2d_A 1ta9_A 1jpu_A ....
Probab=20.48 E-value=24 Score=14.56 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=35.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE--E---CHHHHH---HHC--CCCCEEE
Q ss_conf 6899856863088999999999984498268887--3---377898---730--6788999
Q T0580 5 KVLVLCAGSGTSAQLANAINEGANLTEVRVIANS--G---AYGAHY---DIM--GVYDLII 55 (105)
Q Consensus 5 kIlL~C~~G~STs~la~km~~~a~~~~~~~~i~A--~---~~~~~~---~~~--~~~DiiL 55 (105)
|+|++++..+..+=+.+++.+..++.|+++.+.. . +...+. +.. .+.|.|+
T Consensus 23 r~lvvt~~~~~~~g~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~II 83 (365)
T PF00465_consen 23 RVLVVTGSSLKKSGLLDRVLDALEEAGIEVIVFDGVEPNPTLEDVDEAAELAREFGADFII 83 (365)
T ss_dssp EEEEEEEHHHHHHTTHHHHHHHHHHTCEEEEEEE-E-SS-BHHHHHHHHHHHHHTT-SEEE
T ss_pred CEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 8999999606768749999999987598799995679999999999999999852999999
Done!