Query T0581 NP_252301.1, Pseudomonas aeruginosa PA01, 136 residues Match_columns 136 No_of_seqs 11 out of 13 Neff 1.8 Searched_HMMs 22458 Date Sun Jun 13 15:15:15 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0581.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0581.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zvi_A 2,3-diketo-5-methylthio 32.5 18 0.0008 16.9 2.0 28 26-53 36-63 (425) 2 1hml_A Alpha-lactalbumin; calc 30.0 6.5 0.00029 19.6 -0.6 61 1-64 1-75 (142) 3 2oem_A 2,3-diketo-5-methylthio 27.1 29 0.0013 15.5 2.4 28 26-53 15-42 (413) 4 1q0v_A Hydrophilic protein; ha 21.4 34 0.0015 15.2 1.8 16 16-31 60-75 (81) 5 1ou9_A Stringent starvation pr 19.7 27 0.0012 15.8 0.9 23 43-72 13-35 (129) 6 1ykw_A Rubisco-like protein; b 16.8 45 0.002 14.4 1.6 24 26-49 33-56 (435) 7 2cwo_A P21, RNA silencing supp 16.5 34 0.0015 15.1 0.9 24 60-83 66-89 (197) 8 1ou8_A Stringent starvation pr 16.4 35 0.0016 15.0 0.9 15 43-57 13-27 (111) 9 3fk4_A Rubisco-like protein; s 15.3 53 0.0024 13.9 1.6 28 25-52 15-42 (414) 10 1yfn_A Stringent starvation pr 14.7 42 0.0019 14.6 0.9 15 43-57 14-28 (118) No 1 >2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis} Probab=32.46 E-value=18 Score=16.89 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 8999999987640578841201566531 Q T0581 26 ELSKMLEKVAKESSVGTPRAINEDILDQ 53 (136) Q Consensus 26 el~~~LekVA~eSsvgtPRaInEdiLdq 53 (136) ..-+.-+.+|.|+|+||+..+..+..++ T Consensus 36 d~e~~A~~IA~eqStGTw~~vp~~~~~~ 63 (425) T 2zvi_A 36 DTEKKAEQIATGLTVGSWTDLPLVKQEQ 63 (425) T ss_dssp CHHHHHHHHHHHTTTSSCTTSCHHHHTT T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 9999999986525657786688865869 No 2 >1hml_A Alpha-lactalbumin; calcium-binding protein; 1.70A {Homo sapiens} SCOP: d.2.1.2 Probab=29.98 E-value=6.5 Score=19.64 Aligned_cols=61 Identities=28% Similarity=0.206 Sum_probs=40.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHCCCCCCHHHHHHHHHCCCCCCHHHHHH Q ss_conf 923899999999876565654677789999999--------------8764057884120156653154431578887 Q T0581 1 MSRFMALALCFVLPTAAHAASLKDFELSKMLEK--------------VAKESSVGTPRAINEDILDQGYTVEGNQLIN 64 (136) Q Consensus 1 m~r~~alaL~lvlp~~AqAASl~e~el~~~Lek--------------VA~eSsvgtPRaInEdiLdqgYTVEG~~Lin 64 (136) |--|+.|-|.-+|-.+-.|-++.|-||.+.|.+ +++--|-|-|-|+|++.---- -|---|| T Consensus 1 ~~~~~~~~~~~~~~~~~~a~~~t~~el~~lLk~a~Gf~g~~l~~~~~i~k~eS~~~~~A~n~N~~stD---YGlfQIN 75 (142) T 1hml_A 1 MRFFVPLFLVGILFPAILAKQFTKCELSQLLKDIDGYGGIALPELICTMFHTSGYDTQAIVENNESTE---YGLFQIS 75 (142) T ss_dssp -------------------CBCCHHHHHHHTGGGTTGGGCCHHHHHHHHHHHHTTBTTCEEECSSCEE---ETTTTEE T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEEEEECCCCCCHHHCCCCCCCC---CEEEEEC T ss_conf 95215399999878999999851879999998624898655425012444114798064407887655---0258860 No 3 >2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A Probab=27.07 E-value=29 Score=15.54 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHC Q ss_conf 8999999987640578841201566531 Q T0581 26 ELSKMLEKVAKESSVGTPRAINEDILDQ 53 (136) Q Consensus 26 el~~~LekVA~eSsvgtPRaInEdiLdq 53 (136) ++.+.-+.+|-|+|+|||..+..+..+. T Consensus 15 d~~~~A~~iA~eQS~Gt~~~v~~~~~~~ 42 (413) T 2oem_A 15 DIRKKAEGIALGLTIGTWTDLPALEQEQ 42 (413) T ss_dssp CHHHHHHHHHHHTTTSCSTTSCHHHHHH T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHH T ss_conf 9999999996155568886578855759 No 4 >1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A Probab=21.44 E-value=34 Score=15.15 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5656546777899999 Q T0581 16 AAHAASLKDFELSKML 31 (136) Q Consensus 16 ~AqAASl~e~el~~~L 31 (136) +|-+|||+|+|-.+.- T Consensus 60 AAI~ASL~d~Eeqk~k 75 (81) T 1q0v_A 60 AAIQESLREAEEAKLR 75 (81) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999998 No 5 >1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C Probab=19.68 E-value=27 Score=15.81 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=17.8 Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHCCHHH Q ss_conf 412015665315443157888775225567 Q T0581 43 PRAINEDILDQGYTVEGNQLINHLSVRASH 72 (136) Q Consensus 43 PRaInEdiLdqgYTVEG~~LinHLSVr~~h 72 (136) -|||-|-|+|.|+|- ||.|...+ T Consensus 13 ira~y~W~~dn~~tP-------yi~vda~~ 35 (129) T 1ou9_A 13 LRAYYDWLVDNSFTP-------YLVVDATY 35 (129) T ss_dssp HHHHHHHHHHTTCCE-------EEEEETTS T ss_pred HHHHHHHHHHCCCCC-------EEEEEECC T ss_conf 999999998788986-------79999689 No 6 >1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A Probab=16.83 E-value=45 Score=14.37 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 899999998764057884120156 Q T0581 26 ELSKMLEKVAKESSVGTPRAINED 49 (136) Q Consensus 26 el~~~LekVA~eSsvgtPRaInEd 49 (136) ++-+.-+.+|.|+|+|||....++ T Consensus 33 d~~~aA~~iA~EQS~Gt~~~v~~~ 56 (435) T 1ykw_A 33 DIETALAHFCSEQSTAQWKRVGVD 56 (435) T ss_dssp CHHHHHHHHHHHTCC--------- T ss_pred CHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 899999998633676777136777 No 7 >2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head, tail-TO-tail, all alpha helical, RNA-binding protein, RNA binding protein; 3.30A {Beet yellows virus} Probab=16.54 E-value=34 Score=15.10 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.6 Q ss_pred HHHHHHHHCCHHHHHHHHCCHHHH Q ss_conf 788877522556788873288899 Q T0581 60 NQLINHLSVRASHAERMRSNPDSV 83 (136) Q Consensus 60 ~~LinHLSVr~~hA~qMranP~~V 83 (136) -+-.|||-|.-.|-++|..+|++- T Consensus 66 la~fnhllvtvehre~me~hp~qs 89 (197) T 2cwo_A 66 LASFNHLLVTVEHREWMEQHPNQS 89 (197) T ss_dssp HHHHHHHHHHHHHHHHTCC----- T ss_pred HHHHHHEEEEEHHHHHHHHCCCCC T ss_conf 865310156533688998585744 No 8 >1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B Probab=16.42 E-value=35 Score=15.05 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.3 Q ss_pred CHHHHHHHHHCCCCC Q ss_conf 412015665315443 Q T0581 43 PRAINEDILDQGYTV 57 (136) Q Consensus 43 PRaInEdiLdqgYTV 57 (136) -|||.|=|+|.|+|- T Consensus 13 irA~y~W~~Dn~~TP 27 (111) T 1ou8_A 13 LRAYYDWLVDNSFTP 27 (111) T ss_dssp HHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999998689986 No 9 >3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579} Probab=15.27 E-value=53 Score=13.93 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=21.4 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 7899999998764057884120156653 Q T0581 25 FELSKMLEKVAKESSVGTPRAINEDILD 52 (136) Q Consensus 25 ~el~~~LekVA~eSsvgtPRaInEdiLd 52 (136) .++-+.-+.+|.|+|+|||.++..+..+ T Consensus 15 ~~~~~~A~~iA~eQS~Gt~~~vp~~~~~ 42 (414) T 3fk4_A 15 HNLEKKAEQIALGLTIGSWTHLPHLLQE 42 (414) T ss_dssp SCHHHHHHHHHHHTTTC----------C T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCHH T ss_conf 9999999998756477888617873175 No 10 >1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A Probab=14.67 E-value=42 Score=14.59 Aligned_cols=15 Identities=40% Similarity=0.328 Sum_probs=13.2 Q ss_pred CHHHHHHHHHCCCCC Q ss_conf 412015665315443 Q T0581 43 PRAINEDILDQGYTV 57 (136) Q Consensus 43 PRaInEdiLdqgYTV 57 (136) -|||.|=|+|+|+|- T Consensus 14 irA~y~W~~Dn~~TP 28 (118) T 1yfn_A 14 LRAFYEWLLDNQLTP 28 (118) T ss_dssp HHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999998789985 Done!