Query         T0581 NP_252301.1, Pseudomonas aeruginosa PA01, 136 residues
Match_columns 136
No_of_seqs    11 out of 13
Neff          1.8 
Searched_HMMs 15564
Date          Sun Jun 13 15:16:28 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0581.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0581.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d5ruba2 d.58.9.1 (A:2-137) Rib  28.6      11 0.00072   17.2   1.2   22   27-48     37-58  (136)
  2 d1ykwa2 d.58.9.1 (A:4-145) Rib  26.2      15 0.00098   16.3   1.6   23   27-49     31-53  (142)
  3 d1jroa1 a.56.1.1 (A:85-166) Xa  24.8     9.7 0.00062   17.6   0.3   46   49-102    15-60  (82)
  4 d2d69a2 d.58.9.1 (A:8-133) Rib  21.6      19  0.0012   15.8   1.3   17   31-47     36-52  (126)
  5 d1wdda2 d.58.9.1 (A:11-150) Ri  21.4      16   0.001   16.2   1.0   19   32-50     45-63  (140)
  6 d1geha2 d.58.9.1 (A:12-136) Ri  20.9      17  0.0011   16.0   1.0   17   30-46     31-47  (125)
  7 d1bwva2 d.58.9.1 (A:7-149) Rib  17.7      28  0.0018   14.7   1.5   19   32-50     50-68  (144)
  8 d1ou8a_ b.136.1.1 (A:) Stringe  16.7      24  0.0015   15.1   0.9   22   44-72     10-31  (106)
  9 d1svda2 d.58.9.1 (A:16-142) Ri  16.2      31   0.002   14.4   1.4   21   32-52     33-53  (127)
 10 d1jroa1 a.56.1.1 (A:85-166) Xa  15.7      20  0.0013   15.6   0.3   44   51-102    17-60  (82)

No 1  
>d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
Probab=28.59  E-value=11  Score=17.18  Aligned_cols=22  Identities=27%  Similarity=0.228  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             9999999876405788412015
Q T0581            27 LSKMLEKVAKESSVGTPRAINE   48 (136)
Q Consensus        27 l~~~LekVA~eSsvgtPRaInE   48 (136)
                      .-..-..+|.|||.||...+-+
T Consensus        37 ~~eaAa~iA~EqSTGTw~~V~~   58 (136)
T d5ruba2          37 YVATAAHFAAESSTGTNVEVCT   58 (136)
T ss_dssp             HHHHHHHHHHHTSCCC------
T ss_pred             HHHHHHHHHCCCCCCCCEEEEE
T ss_conf             9999999752256678468442


No 2  
>d1ykwa2 d.58.9.1 (A:4-145) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Probab=26.23  E-value=15  Score=16.33  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             99999998764057884120156
Q T0581            27 LSKMLEKVAKESSVGTPRAINED   49 (136)
Q Consensus        27 l~~~LekVA~eSsvgtPRaInEd   49 (136)
                      +-+.-+.+|.|+|+||++.+-|+
T Consensus        31 ~~~aA~~iA~EQStGTw~~v~~t   53 (142)
T d1ykwa2          31 IETALAHFCSEQSTAQWKRVGVD   53 (142)
T ss_dssp             HHHHHHHHHHHTCC---------
T ss_pred             HHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99999998553661012216775


No 3  
>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A, domain 2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=24.77  E-value=9.7  Score=17.57  Aligned_cols=46  Identities=20%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             HHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             665315443157888775225567888732888999997676524711688974
Q T0581            49 DILDQGYTVEGNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLA  102 (136)
Q Consensus        49 diLdqgYTVEG~~LinHLSVr~~hA~qMranP~~Vr~QLg~SVC~N~gyR~Lma  102 (136)
                      +.+-=||-.-|.-+.-        .+-.+.||+.++..|....||=.||+....
T Consensus        15 ~~~QCGfCtpG~vm~~--------~~ll~~~~~~i~~~l~GnlCRCtgY~~I~~   60 (82)
T d1jroa1          15 HGSQCGFCTPGFIVSM--------AAAHDRDRKDYDDLLAGNLCRCTGYAPILR   60 (82)
T ss_dssp             TCCSSCTTHHHHHHHH--------HHHHHTTCCCHHHHHTTCCCSSSCSHHHHH
T ss_pred             CCCCCCCCCHHHHHHH--------HHHHHCCCCHHHHHHCCCCCCCCCCHHHHH
T ss_conf             8884884516899999--------988505851179986177776678577999


No 4  
>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.57  E-value=19  Score=15.77  Aligned_cols=17  Identities=35%  Similarity=0.415  Sum_probs=12.8

Q ss_pred             HHHHHHHCCCCCCHHHH
Q ss_conf             99987640578841201
Q T0581            31 LEKVAKESSVGTPRAIN   47 (136)
Q Consensus        31 LekVA~eSsvgtPRaIn   47 (136)
                      -.-||.|||.||=..+-
T Consensus        36 aa~vAaESSTGTWt~V~   52 (126)
T d2d69a2          36 AGRIASESSIGTWTTLW   52 (126)
T ss_dssp             HHHHHHHTTTCCEEESS
T ss_pred             HHHHHHCCCCCCCEEEE
T ss_conf             88877045667777831


No 5  
>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=21.41  E-value=16  Score=16.16  Aligned_cols=19  Identities=42%  Similarity=0.302  Sum_probs=14.9

Q ss_pred             HHHHHHCCCCCCHHHHHHH
Q ss_conf             9987640578841201566
Q T0581            32 EKVAKESSVGTPRAINEDI   50 (136)
Q Consensus        32 ekVA~eSsvgtPRaInEdi   50 (136)
                      .-||.|||.||=-.+--|-
T Consensus        45 a~vAaESSTGTWt~V~Td~   63 (140)
T d1wdda2          45 AAVAAESSTGTWTTVWTDG   63 (140)
T ss_dssp             HHHHHHTTTCCSSCCGGGG
T ss_pred             HHHHCCCCCCCCEEEEECC
T ss_conf             6651124677717999768


No 6  
>d1geha2 d.58.9.1 (A:12-136) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=20.91  E-value=17  Score=15.97  Aligned_cols=17  Identities=41%  Similarity=0.346  Sum_probs=13.8

Q ss_pred             HHHHHHHHCCCCCCHHH
Q ss_conf             99998764057884120
Q T0581            30 MLEKVAKESSVGTPRAI   46 (136)
Q Consensus        30 ~LekVA~eSsvgtPRaI   46 (136)
                      --.-||.|||.||=..+
T Consensus        31 aaa~vAaEsSTGTwt~V   47 (125)
T d1geha2          31 AAGAVAAESSTGTWTTL   47 (125)
T ss_dssp             HHHHHHHHTSSCSSCCS
T ss_pred             HHHHHCCCCCCCCCEEE
T ss_conf             63433124578765896


No 7  
>d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=17.74  E-value=28  Score=14.72  Aligned_cols=19  Identities=37%  Similarity=0.302  Sum_probs=14.0

Q ss_pred             HHHHHHCCCCCCHHHHHHH
Q ss_conf             9987640578841201566
Q T0581            32 EKVAKESSVGTPRAINEDI   50 (136)
Q Consensus        32 ekVA~eSsvgtPRaInEdi   50 (136)
                      .-||.|||.||=-.+--|.
T Consensus        50 aavAaESSTGTWT~vwTd~   68 (144)
T d1bwva2          50 AAVAGESSTATWTVVWTDL   68 (144)
T ss_dssp             HHHHHHTTTCCSSCCGGGG
T ss_pred             HHHEEEECCCCCEEEECCC
T ss_conf             0110131366527898068


No 8  
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]} SCOP: d1ou9b_ d1ou9c_ d1oula_ d1ou9a_ d1twba_ d1oulb_ d1yfna1 d1yfnb1
Probab=16.65  E-value=24  Score=15.10  Aligned_cols=22  Identities=32%  Similarity=0.370  Sum_probs=16.8

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHCCHHH
Q ss_conf             12015665315443157888775225567
Q T0581            44 RAINEDILDQGYTVEGNQLINHLSVRASH   72 (136)
Q Consensus        44 RaInEdiLdqgYTVEG~~LinHLSVr~~h   72 (136)
                      |||.|-|+|.|+|-       ||.|...|
T Consensus        10 ra~~~Wi~Dn~~tP-------yi~Vda~~   31 (106)
T d1ou8a_          10 RAYYDWLVDNSFTP-------YLVVDATY   31 (106)
T ss_dssp             HHHHHHHHHTTCCE-------EEEEETTS
T ss_pred             HHHHHHHHHCCCCC-------EEEEEECC
T ss_conf             77889986089997-------79998049


No 9  
>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Halothiobacillus neapolitanus [TaxId: 927]}
Probab=16.24  E-value=31  Score=14.43  Aligned_cols=21  Identities=43%  Similarity=0.452  Sum_probs=15.5

Q ss_pred             HHHHHHCCCCCCHHHHHHHHH
Q ss_conf             998764057884120156653
Q T0581            32 EKVAKESSVGTPRAINEDILD   52 (136)
Q Consensus        32 ekVA~eSsvgtPRaInEdiLd   52 (136)
                      .-||.|||.||=-.+--|.|+
T Consensus        33 a~vAaESSTgTwt~v~Td~lt   53 (127)
T d1svda2          33 AAVAAESSTGTWTTVWTDLLT   53 (127)
T ss_dssp             HHHHHHTTTCCSSCCGGGGGS
T ss_pred             HHHEEECCCCCCEEEECCCCC
T ss_conf             333012157663688706873


No 10 
>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A, domain 2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=15.67  E-value=20  Score=15.59  Aligned_cols=44  Identities=20%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             HHCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             5315443157888775225567888732888999997676524711688974
Q T0581            51 LDQGYTVEGNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLA  102 (136)
Q Consensus        51 LdqgYTVEG~~LinHLSVr~~hA~qMranP~~Vr~QLg~SVC~N~gyR~Lma  102 (136)
                      +-=||-.-|.-+-        -.+..+.|++.++..|....||=.||+..+.
T Consensus        17 ~QCGyCtPG~vm~--------~~~ll~~~~~~i~~~l~GnlCRCtgY~~I~~   60 (82)
T d1jroa1          17 SQCGFCTPGFIVS--------MAAAHDRDRKDYDDLLAGNLCRCTGYAPILR   60 (82)
T ss_dssp             CSSCTTHHHHHHH--------HHHHHHTTCCCHHHHHTTCCCSSSCSHHHHH
T ss_pred             CCCCCCCHHHHHH--------HHHHHHCCCHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             8789875269999--------9998751201599997688665568689999


Done!