Query T0581 NP_252301.1, Pseudomonas aeruginosa PA01, 136 residues
Match_columns 136
No_of_seqs 11 out of 13
Neff 1.8
Searched_HMMs 15564
Date Sun Jun 13 15:16:28 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0581.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0581.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d5ruba2 d.58.9.1 (A:2-137) Rib 28.6 11 0.00072 17.2 1.2 22 27-48 37-58 (136)
2 d1ykwa2 d.58.9.1 (A:4-145) Rib 26.2 15 0.00098 16.3 1.6 23 27-49 31-53 (142)
3 d1jroa1 a.56.1.1 (A:85-166) Xa 24.8 9.7 0.00062 17.6 0.3 46 49-102 15-60 (82)
4 d2d69a2 d.58.9.1 (A:8-133) Rib 21.6 19 0.0012 15.8 1.3 17 31-47 36-52 (126)
5 d1wdda2 d.58.9.1 (A:11-150) Ri 21.4 16 0.001 16.2 1.0 19 32-50 45-63 (140)
6 d1geha2 d.58.9.1 (A:12-136) Ri 20.9 17 0.0011 16.0 1.0 17 30-46 31-47 (125)
7 d1bwva2 d.58.9.1 (A:7-149) Rib 17.7 28 0.0018 14.7 1.5 19 32-50 50-68 (144)
8 d1ou8a_ b.136.1.1 (A:) Stringe 16.7 24 0.0015 15.1 0.9 22 44-72 10-31 (106)
9 d1svda2 d.58.9.1 (A:16-142) Ri 16.2 31 0.002 14.4 1.4 21 32-52 33-53 (127)
10 d1jroa1 a.56.1.1 (A:85-166) Xa 15.7 20 0.0013 15.6 0.3 44 51-102 17-60 (82)
No 1
>d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
Probab=28.59 E-value=11 Score=17.18 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9999999876405788412015
Q T0581 27 LSKMLEKVAKESSVGTPRAINE 48 (136)
Q Consensus 27 l~~~LekVA~eSsvgtPRaInE 48 (136)
.-..-..+|.|||.||...+-+
T Consensus 37 ~~eaAa~iA~EqSTGTw~~V~~ 58 (136)
T d5ruba2 37 YVATAAHFAAESSTGTNVEVCT 58 (136)
T ss_dssp HHHHHHHHHHHTSCCC------
T ss_pred HHHHHHHHHCCCCCCCCEEEEE
T ss_conf 9999999752256678468442
No 2
>d1ykwa2 d.58.9.1 (A:4-145) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Probab=26.23 E-value=15 Score=16.33 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999998764057884120156
Q T0581 27 LSKMLEKVAKESSVGTPRAINED 49 (136)
Q Consensus 27 l~~~LekVA~eSsvgtPRaInEd 49 (136)
+-+.-+.+|.|+|+||++.+-|+
T Consensus 31 ~~~aA~~iA~EQStGTw~~v~~t 53 (142)
T d1ykwa2 31 IETALAHFCSEQSTAQWKRVGVD 53 (142)
T ss_dssp HHHHHHHHHHHTCC---------
T ss_pred HHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999998553661012216775
No 3
>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A, domain 2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=24.77 E-value=9.7 Score=17.57 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=31.8
Q ss_pred HHHHCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 665315443157888775225567888732888999997676524711688974
Q T0581 49 DILDQGYTVEGNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLA 102 (136)
Q Consensus 49 diLdqgYTVEG~~LinHLSVr~~hA~qMranP~~Vr~QLg~SVC~N~gyR~Lma 102 (136)
+.+-=||-.-|.-+.- .+-.+.||+.++..|....||=.||+....
T Consensus 15 ~~~QCGfCtpG~vm~~--------~~ll~~~~~~i~~~l~GnlCRCtgY~~I~~ 60 (82)
T d1jroa1 15 HGSQCGFCTPGFIVSM--------AAAHDRDRKDYDDLLAGNLCRCTGYAPILR 60 (82)
T ss_dssp TCCSSCTTHHHHHHHH--------HHHHHTTCCCHHHHHTTCCCSSSCSHHHHH
T ss_pred CCCCCCCCCHHHHHHH--------HHHHHCCCCHHHHHHCCCCCCCCCCHHHHH
T ss_conf 8884884516899999--------988505851179986177776678577999
No 4
>d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.57 E-value=19 Score=15.77 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=12.8
Q ss_pred HHHHHHHCCCCCCHHHH
Q ss_conf 99987640578841201
Q T0581 31 LEKVAKESSVGTPRAIN 47 (136)
Q Consensus 31 LekVA~eSsvgtPRaIn 47 (136)
-.-||.|||.||=..+-
T Consensus 36 aa~vAaESSTGTWt~V~ 52 (126)
T d2d69a2 36 AGRIASESSIGTWTTLW 52 (126)
T ss_dssp HHHHHHHTTTCCEEESS
T ss_pred HHHHHHCCCCCCCEEEE
T ss_conf 88877045667777831
No 5
>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=21.41 E-value=16 Score=16.16 Aligned_cols=19 Identities=42% Similarity=0.302 Sum_probs=14.9
Q ss_pred HHHHHHCCCCCCHHHHHHH
Q ss_conf 9987640578841201566
Q T0581 32 EKVAKESSVGTPRAINEDI 50 (136)
Q Consensus 32 ekVA~eSsvgtPRaInEdi 50 (136)
.-||.|||.||=-.+--|-
T Consensus 45 a~vAaESSTGTWt~V~Td~ 63 (140)
T d1wdda2 45 AAVAAESSTGTWTTVWTDG 63 (140)
T ss_dssp HHHHHHTTTCCSSCCGGGG
T ss_pred HHHHCCCCCCCCEEEEECC
T ss_conf 6651124677717999768
No 6
>d1geha2 d.58.9.1 (A:12-136) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=20.91 E-value=17 Score=15.97 Aligned_cols=17 Identities=41% Similarity=0.346 Sum_probs=13.8
Q ss_pred HHHHHHHHCCCCCCHHH
Q ss_conf 99998764057884120
Q T0581 30 MLEKVAKESSVGTPRAI 46 (136)
Q Consensus 30 ~LekVA~eSsvgtPRaI 46 (136)
--.-||.|||.||=..+
T Consensus 31 aaa~vAaEsSTGTwt~V 47 (125)
T d1geha2 31 AAGAVAAESSTGTWTTL 47 (125)
T ss_dssp HHHHHHHHTSSCSSCCS
T ss_pred HHHHHCCCCCCCCCEEE
T ss_conf 63433124578765896
No 7
>d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=17.74 E-value=28 Score=14.72 Aligned_cols=19 Identities=37% Similarity=0.302 Sum_probs=14.0
Q ss_pred HHHHHHCCCCCCHHHHHHH
Q ss_conf 9987640578841201566
Q T0581 32 EKVAKESSVGTPRAINEDI 50 (136)
Q Consensus 32 ekVA~eSsvgtPRaInEdi 50 (136)
.-||.|||.||=-.+--|.
T Consensus 50 aavAaESSTGTWT~vwTd~ 68 (144)
T d1bwva2 50 AAVAGESSTATWTVVWTDL 68 (144)
T ss_dssp HHHHHHTTTCCSSCCGGGG
T ss_pred HHHEEEECCCCCEEEECCC
T ss_conf 0110131366527898068
No 8
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]} SCOP: d1ou9b_ d1ou9c_ d1oula_ d1ou9a_ d1twba_ d1oulb_ d1yfna1 d1yfnb1
Probab=16.65 E-value=24 Score=15.10 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=16.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHCCHHH
Q ss_conf 12015665315443157888775225567
Q T0581 44 RAINEDILDQGYTVEGNQLINHLSVRASH 72 (136)
Q Consensus 44 RaInEdiLdqgYTVEG~~LinHLSVr~~h 72 (136)
|||.|-|+|.|+|- ||.|...|
T Consensus 10 ra~~~Wi~Dn~~tP-------yi~Vda~~ 31 (106)
T d1ou8a_ 10 RAYYDWLVDNSFTP-------YLVVDATY 31 (106)
T ss_dssp HHHHHHHHHTTCCE-------EEEEETTS
T ss_pred HHHHHHHHHCCCCC-------EEEEEECC
T ss_conf 77889986089997-------79998049
No 9
>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Halothiobacillus neapolitanus [TaxId: 927]}
Probab=16.24 E-value=31 Score=14.43 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=15.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHH
Q ss_conf 998764057884120156653
Q T0581 32 EKVAKESSVGTPRAINEDILD 52 (136)
Q Consensus 32 ekVA~eSsvgtPRaInEdiLd 52 (136)
.-||.|||.||=-.+--|.|+
T Consensus 33 a~vAaESSTgTwt~v~Td~lt 53 (127)
T d1svda2 33 AAVAAESSTGTWTTVWTDLLT 53 (127)
T ss_dssp HHHHHHTTTCCSSCCGGGGGS
T ss_pred HHHEEECCCCCCEEEECCCCC
T ss_conf 333012157663688706873
No 10
>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A, domain 2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=15.67 E-value=20 Score=15.59 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=30.6
Q ss_pred HHCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 5315443157888775225567888732888999997676524711688974
Q T0581 51 LDQGYTVEGNQLINHLSVRASHAERMRSNPDSVRSQLGDSVCSNTGYRQLLA 102 (136)
Q Consensus 51 LdqgYTVEG~~LinHLSVr~~hA~qMranP~~Vr~QLg~SVC~N~gyR~Lma 102 (136)
+-=||-.-|.-+- -.+..+.|++.++..|....||=.||+..+.
T Consensus 17 ~QCGyCtPG~vm~--------~~~ll~~~~~~i~~~l~GnlCRCtgY~~I~~ 60 (82)
T d1jroa1 17 SQCGFCTPGFIVS--------MAAAHDRDRKDYDDLLAGNLCRCTGYAPILR 60 (82)
T ss_dssp CSSCTTHHHHHHH--------HHHHHHTTCCCHHHHHTTCCCSSSCSHHHHH
T ss_pred CCCCCCCHHHHHH--------HHHHHHCCCHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 8789875269999--------9998751201599997688665568689999
Done!