Query T0582 YP_957874.1, Marinobacter aquaeolei VT8, 222 residues
Match_columns 222
No_of_seqs 207 out of 460
Neff 6.3
Searched_HMMs 11830
Date Sun Jun 13 15:25:37 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0582.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0582.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07883 Cupin_2: Cupin domain 98.1 8.2E-07 7E-11 56.0 3.6 52 46-97 2-58 (71)
2 PF07883 Cupin_2: Cupin domain 98.0 4.1E-06 3.5E-10 51.9 5.0 61 149-209 2-69 (71)
3 PF02041 Auxin_BP: Auxin bindi 97.4 0.00024 2E-08 41.7 7.3 80 130-209 24-124 (167)
4 PF02041 Auxin_BP: Auxin bindi 97.1 0.001 8.5E-08 38.0 7.9 91 10-100 10-116 (167)
5 PF00190 Cupin_1: Cupin; Inte 97.1 0.00029 2.5E-08 41.1 4.9 67 43-109 35-119 (144)
6 PF00190 Cupin_1: Cupin; Inte 97.0 0.00034 2.9E-08 40.7 4.7 66 143-208 32-115 (144)
7 PF05726 Pirin_C: Pirin C-term 96.7 0.0011 9.6E-08 37.7 5.4 64 150-213 4-71 (104)
8 PF03079 ARD: ARD/ARD' family; 96.5 0.0023 2E-07 35.8 5.9 62 149-210 67-147 (157)
9 PF01050 MannoseP_isomer: Mann 96.0 0.021 1.8E-06 30.3 8.5 79 135-213 53-139 (151)
10 PF07847 DUF1637: Protein of u 95.6 0.0085 7.2E-07 32.5 5.3 60 18-80 23-83 (196)
11 PF02311 AraC_binding: AraC-li 95.3 0.0049 4.2E-07 33.9 3.2 62 46-107 7-74 (136)
12 PF02311 AraC_binding: AraC-li 94.9 0.011 9E-07 32.0 4.0 62 149-210 7-74 (136)
13 PF05995 CDO_I: Cysteine dioxy 94.9 0.063 5.3E-06 27.5 7.9 45 27-74 63-108 (175)
14 PF06249 EutQ: Ethanolamine ut 94.2 0.019 1.6E-06 30.4 4.0 73 135-210 64-144 (152)
15 PF03079 ARD: ARD/ARD' family; 94.2 0.042 3.5E-06 28.5 5.6 65 46-110 67-150 (157)
16 PF11699 Mif2: Mif2/CENP-C lik 93.8 0.085 7.2E-06 26.7 6.5 75 135-209 2-83 (85)
17 PF06249 EutQ: Ethanolamine ut 93.3 0.057 4.8E-06 27.7 5.0 62 46-109 81-146 (152)
18 PF05995 CDO_I: Cysteine dioxy 93.0 0.11 9.1E-06 26.1 6.0 68 133-200 63-149 (175)
19 PF06052 3-HAO: 3-hydroxyanthr 92.7 0.21 1.8E-05 24.3 7.5 86 23-113 19-112 (151)
20 PF05726 Pirin_C: Pirin C-term 92.1 0.065 5.5E-06 27.4 4.0 64 47-110 4-71 (104)
21 PF02678 Pirin: Pirin; InterP 91.8 0.078 6.6E-06 26.9 4.1 46 155-200 39-93 (107)
22 PF05899 Cupin_3: Protein of u 90.1 0.36 3.1E-05 23.0 6.2 16 182-197 48-63 (74)
23 PF04209 HgmA: homogentisate 1 88.4 0.53 4.5E-05 22.0 6.5 103 4-107 80-197 (426)
24 PF05523 FdtA: WxcM-like, C-te 66.9 2.8 0.00023 17.9 4.2 76 40-115 31-118 (131)
25 PF04622 ERG2_Sigma1R: ERG2 an 60.7 2.3 0.0002 18.3 2.6 80 128-208 80-168 (216)
26 PF00908 dTDP_sugar_isom: dTDP 55.4 4.4 0.00038 16.6 7.4 102 22-123 3-147 (176)
27 PF07385 DUF1498: Protein of u 49.1 5.6 0.00048 16.0 3.3 15 99-113 115-129 (225)
28 PF04962 KduI: KduI/IolB famil 45.1 6.5 0.00055 15.7 12.9 160 45-210 30-240 (261)
29 PF00027 cNMP_binding: Cyclic 40.5 7.7 0.00065 15.2 4.3 61 149-210 1-77 (91)
30 PF08007 Cupin_4: Cupin superf 39.3 8.1 0.00068 15.1 3.2 20 81-100 181-200 (319)
31 PF02373 JmjC: JmjC domain; I 35.3 6.4 0.00054 15.7 1.5 21 181-201 84-104 (114)
32 PF06560 GPI: Glucose-6-phosph 29.6 12 0.00099 14.2 7.5 67 43-109 51-144 (182)
33 PF11149 DUF2924: Protein of u 24.1 15 0.0012 13.6 1.8 37 148-184 77-114 (136)
34 PF11142 DUF2917: Protein of u 23.6 15 0.0013 13.5 5.8 46 150-195 2-53 (63)
35 PF06339 Ectoine_synth: Ectoin 23.6 15 0.0013 13.5 8.5 56 45-100 38-99 (126)
36 PF07887 Calmodulin_bind: Calm 20.1 18 0.0015 13.1 3.7 25 60-84 48-73 (302)
No 1
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily (cupa is the Latin term for a small barrel). ; PDB: 3es1_A 2h0v_A 1y3t_B 1juh_C 1h1m_C 1gqg_B 1gqh_D 1h1i_D 2i45_D 3d82_D ....
Probab=98.09 E-value=8.2e-07 Score=56.04 Aligned_cols=52 Identities=27% Similarity=0.435 Sum_probs=27.5
Q ss_pred EEEECCCCCCCCCCCCCC-EEEEEEEEEEECCC----CCCCCCCEEECCCCCCCCEE
Q ss_conf 999568985788877764-69999877887278----61168616885889822326
Q T0582 46 IVRYAPGSRFSAHTHDGG-EEFIVLDGVFQDEH----GDYPAGTYVRNPPTTSHVPG 97 (222)
Q Consensus 46 lvr~~pG~~~p~H~H~~~-ee~~VL~G~~~d~~----~~~~~G~y~~~p~gs~H~p~ 97 (222)
+++++||...|.|.|+.. |-+|||+|.+...- -.+.+|++++.|++..|...
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~ 58 (71)
T PF07883_consen 2 LMTIPPGGSIPPHRHPGEDEFIYVLEGELTVEVGGEEYELEPGDSIYIPPGVPHRFR 58 (71)
T ss_dssp EEEEEE-EEEEEEEESSEEEEEEEEE-EEEEEETTEEEEE-TT-EEEEETTSEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEECCEEEECCCCEEEEECCCCCEEEE
T ss_conf 999999989859999998899999989599998999999069859998899919979
No 2
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily (cupa is the Latin term for a small barrel). ; PDB: 3es1_A 2h0v_A 1y3t_B 1juh_C 1h1m_C 1gqg_B 1gqh_D 1h1i_D 2i45_D 3d82_D ....
Probab=97.96 E-value=4.1e-06 Score=51.94 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=49.4
Q ss_pred EEEECCCCCCCCCCCCCE-EE-EEEEEEEEEC--CC--EECCCEEEECCCCCCEEEEEC-CCCCEEEE
Q ss_conf 999688974477698867-99-9987789828--93--216861798189980224888-98829999
Q T0582 149 HRKLEPGANLTSEAAGGI-EV-LVLDGDVTVN--DE--VLGRNAWLRLPEGEALSATAG-ARGAKIWM 209 (222)
Q Consensus 149 L~r~~pG~~~p~h~h~Ge-Ei-~VLeG~l~d~--~~--~~~~Gs~i~~P~g~~H~~~a~-~~Gc~i~v 209 (222)
+++++||...+.|.|.+. |+ +||+|++... +. .+.+||+++.|++..|+..+. .+.|.++.
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~ 69 (71)
T PF07883_consen 2 LMTIPPGGSIPPHRHPGEDEFIYVLEGELTVEVGGEEYELEPGDSIYIPPGVPHRFRNPGDEPAVLLV 69 (71)
T ss_dssp EEEEEE-EEEEEEEESSEEEEEEEEE-EEEEEETTEEEEE-TT-EEEEETTSEEEEEECSSSEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEECCEEEECCCCEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 99999998985999999889999998959999899999906985999889991997999999999999
No 3
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER , . The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation . Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells , .; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1lr5_B 1lrh_D.
Probab=97.41 E-value=0.00024 Score=41.67 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCCCEEEEEEE-----CCCCCEEEEEEECCCCCCCCCCCCCEEE-EEEEEEEE--EC--CCE---------ECCCEEEEC
Q ss_conf 66862789872-----0898489999968897447769886799-99877898--28--932---------168617981
Q T0582 130 PVEGISTSLLH-----EDERETVTHRKLEPGANLTSEAAGGIEV-LVLDGDVT--VN--DEV---------LGRNAWLRL 190 (222)
Q Consensus 130 ~~~Gv~~~~L~-----~~~~e~v~L~r~~pG~~~p~h~h~GeEi-~VLeG~l~--d~--~~~---------~~~Gs~i~~ 190 (222)
..+|++-+.+- ....-.|+|+-++||...|.|.|..||+ +||+|+=. .. ... +.++|.+..
T Consensus 24 g~~GLsH~TvaG~~~hG~kevEVWlQTfapg~~TPiHRHsCEEVfvVlkG~Gtl~l~~s~~k~pg~P~e~~if~nstf~I 103 (167)
T PF02041_consen 24 GRPGLSHMTVAGSLLHGMKEVEVWLQTFAPGSRTPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHI 103 (167)
T ss_dssp -----EEEEEE--------SEEEEEEEE----B--EEEESS-EEEEEEE----EEE---SSS-----EEE---TTEEEEE
T ss_pred CCCCCEEEEECCHHHCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEECCCCEEEE
T ss_conf 68862478860011147525656643116888898614453079999835068997012455899863667559996996
Q ss_pred CCCCCEEEEECC--CCCEEEE
Q ss_conf 899802248889--8829999
Q T0582 191 PEGEALSATAGA--RGAKIWM 209 (222)
Q Consensus 191 P~g~~H~~~a~~--~Gc~i~v 209 (222)
|++..|+.+.+. +...+++
T Consensus 104 Pvnd~HQv~NT~e~edlqvlv 124 (167)
T PF02041_consen 104 PVNDAHQVWNTNEHEDLQVLV 124 (167)
T ss_dssp -TT--BEEB---SSS-EEEEE
T ss_pred CCCCCHHCCCCCCCCCEEEEE
T ss_conf 799821101389886458999
No 4
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER , . The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation . Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells , .; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1lr5_B 1lrh_D.
Probab=97.11 E-value=0.001 Score=37.96 Aligned_cols=91 Identities=25% Similarity=0.362 Sum_probs=63.7
Q ss_pred EEEEECCCCCCEECCCCCEEEEEEECC--CCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEE--EEC--CCCCCC--
Q ss_conf 167705646633158895579995026--887057999999568985788877764699998778--872--786116--
Q T0582 10 PVVIDTDQLEWRPSPMKGVERRMLDRI--GGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDGV--FQD--EHGDYP-- 81 (222)
Q Consensus 10 ~~~v~~~~~~W~~~p~~Gv~~~~L~~~--~~e~g~~t~lvr~~pG~~~p~H~H~~~ee~~VL~G~--~~d--~~~~~~-- 81 (222)
.+|.+-.+++=-..-.+|..-..+... .+.......|..|+||+..|.|+|...|-+.||+|. +.- -...|+
T Consensus 10 ~~Vr~iselpq~~yg~~GLsH~TvaG~~~hG~kevEVWlQTfapg~~TPiHRHsCEEVfvVlkG~Gtl~l~~s~~k~pg~ 89 (167)
T PF02041_consen 10 PLVRNISELPQDNYGRPGLSHMTVAGSLLHGMKEVEVWLQTFAPGSRTPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGK 89 (167)
T ss_dssp -SEEEGGGS--B-------EEEEEE--------SEEEEEEEE----B--EEEESS-EEEEEEE----EEE---SSS----
T ss_pred CCEEEHHHCCCCCCCCCCCEEEEECCHHHCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCC
T ss_conf 01156825865212688624788600111475256566431168888986144530799998350689970124558998
Q ss_pred -------CCCEEECCCCCCCCEE-CCC
Q ss_conf -------8616885889822326-488
Q T0582 82 -------AGTYVRNPPTTSHVPG-SAE 100 (222)
Q Consensus 82 -------~G~y~~~p~gs~H~p~-s~~ 100 (222)
+++.+..|++..|+.+ |.+
T Consensus 90 P~e~~if~nstf~IPvnd~HQv~NT~e 116 (167)
T PF02041_consen 90 PQEFPIFPNSTFHIPVNDAHQVWNTNE 116 (167)
T ss_dssp -EEE---TTEEEEE-TT--BEEB---S
T ss_pred CEEEEECCCCEEEECCCCCHHCCCCCC
T ss_conf 636675599969967998211013898
No 5
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2et1_A 2et7_A 2ete_B 1fi2_A 2vqa_C 2uy9_A 2uy8_A 2v09_A 1uw8_A 2uyb_A ....
Probab=97.08 E-value=0.00029 Score=41.11 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=44.8
Q ss_pred EEEEEEECCCCCCCCCCCCCCEEEEEEEEEEE----CCC----------CC--CCCCCEEECCCCCCCCEECC--CCEEE
Q ss_conf 99999956898578887776469999877887----278----------61--16861688588982232648--88089
Q T0582 43 ATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ----DEH----------GD--YPAGTYVRNPPTTSHVPGSA--EGCTI 104 (222)
Q Consensus 43 ~t~lvr~~pG~~~p~H~H~~~ee~~VL~G~~~----d~~----------~~--~~~G~y~~~p~gs~H~p~s~--~Gc~~ 104 (222)
+...+.+.||+-+.+|.|...|-+||++|... ..+ .. ..+|+.++.|+|..|.-.+. +.++.
T Consensus 35 ~~~~~~i~p~~~~~Ph~h~a~ei~~V~~G~~~~~~v~~~~~~~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~g~~~~~~ 114 (144)
T PF00190_consen 35 AVRVVLIKPGAMRLPHYHNADEIFYVIEGEGRVGVVGPGGPEGKFRVYSQKVRLREGDVFVIPAGHPHWIVNDGDDENFF 114 (144)
T ss_dssp EEEEEEEETTEEEEEEEESSEEEEEEEE-EEEEEEEESTECSSBEEEEEEEEEETTTSEEEE-TT-EEEEEEESSSSEEE
T ss_pred EEEEEECCCCCCCCEEECCCEEEEEEEECCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEECCCEEEEEECCCCCCCEE
T ss_conf 56766211587321355165189999731008999856887654120674450228968997784069996379998789
Q ss_pred EEEEE
Q ss_conf 99900
Q T0582 105 FVKLW 109 (222)
Q Consensus 105 ~vkl~ 109 (222)
++-..
T Consensus 115 ~~~f~ 119 (144)
T PF00190_consen 115 LVIFN 119 (144)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99998
No 6
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2et1_A 2et7_A 2ete_B 1fi2_A 2vqa_C 2uy9_A 2uy8_A 2v09_A 1uw8_A 2uyb_A ....
Probab=97.01 E-value=0.00034 Score=40.73 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=51.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCEEE-EEEEEEEE----ECC----------CE--ECCCEEEECCCCCCEEEEECC-CC
Q ss_conf 98489999968897447769886799-99877898----289----------32--168617981899802248889-88
Q T0582 143 ERETVTHRKLEPGANLTSEAAGGIEV-LVLDGDVT----VND----------EV--LGRNAWLRLPEGEALSATAGA-RG 204 (222)
Q Consensus 143 ~~e~v~L~r~~pG~~~p~h~h~GeEi-~VLeG~l~----d~~----------~~--~~~Gs~i~~P~g~~H~~~a~~-~G 204 (222)
..-.+....++||+....|.|...|+ ||++|+.. ..+ .. +.+||.++.|+|..|-..+.. +.
T Consensus 32 ~~~~~~~~~i~p~~~~~Ph~h~a~ei~~V~~G~~~~~~v~~~~~~~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~g~~~ 111 (144)
T PF00190_consen 32 GGSAVRVVLIKPGAMRLPHYHNADEIFYVIEGEGRVGVVGPGGPEGKFRVYSQKVRLREGDVFVIPAGHPHWIVNDGDDE 111 (144)
T ss_dssp TTEEEEEEEEETTEEEEEEEESSEEEEEEEE-EEEEEEEESTECSSBEEEEEEEEEETTTSEEEE-TT-EEEEEEESSSS
T ss_pred CCEEEEEEECCCCCCCCEEECCCEEEEEEEECCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEECCCEEEEEECCCCCC
T ss_conf 64256766211587321355165189999731008999856887654120674450228968997784069996379998
Q ss_pred CEEE
Q ss_conf 2999
Q T0582 205 AKIW 208 (222)
Q Consensus 205 c~i~ 208 (222)
+..+
T Consensus 112 ~~~~ 115 (144)
T PF00190_consen 112 NFFL 115 (144)
T ss_dssp EEEE
T ss_pred CEEE
T ss_conf 7899
No 7
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures . Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues . Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity . Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold . Pirin was identified to be a metal-binding protein , and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion . Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilizing the formation of the p50·Bcl-3·DNA complex . Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation . However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex . ; PDB: 2p17_A 1j1l_A.
Probab=96.71 E-value=0.0011 Score=37.66 Aligned_cols=64 Identities=33% Similarity=0.591 Sum_probs=44.0
Q ss_pred EEECCCCCCCCCCCCCEE--EEEEEEEEEECCC--EECCCEEEECCCCCCEEEEECCCCCEEEEEECC
Q ss_conf 996889744776988679--9998778982893--216861798189980224888988299998368
Q T0582 150 RKLEPGANLTSEAAGGIE--VLVLDGDVTVNDE--VLGRNAWLRLPEGEALSATAGARGAKIWMKTGH 213 (222)
Q Consensus 150 ~r~~pG~~~p~h~h~GeE--i~VLeG~l~d~~~--~~~~Gs~i~~P~g~~H~~~a~~~Gc~i~vKTGH 213 (222)
++++||+.+....+.+.+ +||++|+++.++. .+.+|+.+....+..-...+.+++|.+++-.|-
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~i~~~~~~~~~~~~~~l~~g~~i~l~a~~~~a~~lll~G~ 71 (104)
T PF05726_consen 4 ITLEPGAEFTLPLPEGFNAFIYVLEGEVSIGGEEATLPAGQLAVLEDGDEITLTAGEEGARFLLLGGE 71 (104)
T ss_dssp EEE----EEEEEE------EEEEEE--EEE--TTEEE-TTEEEEE---EEEEEE-SSSSEEEEEEE--
T ss_pred EEECCCCEEEEECCCCCEEEEEEEECEEEECCCCCEECCCCEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 99889998970169997899999948699989631188984899889988999978998099999773
No 8
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ . ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions . ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels , . This family also contains other proteins, whose functions are not well characterised.; PDB: 1vr3_A 2hji_A 1zrr_A.
Probab=96.51 E-value=0.0023 Score=35.84 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=44.7
Q ss_pred EEEECCCC---------CCCCCCCCCEEE-EEEEEEE----EECCCE-----ECCCEEEECCCCCCEEEEECCCCCEEEE
Q ss_conf 99968897---------447769886799-9987789----828932-----1686179818998022488898829999
Q T0582 149 HRKLEPGA---------NLTSEAAGGIEV-LVLDGDV----TVNDEV-----LGRNAWLRLPEGEALSATAGARGAKIWM 209 (222)
Q Consensus 149 L~r~~pG~---------~~p~h~h~GeEi-~VLeG~l----~d~~~~-----~~~Gs~i~~P~g~~H~~~a~~~Gc~i~v 209 (222)
++.+.|+. .+..|.|..+|+ |+++|+. .+.++. +.+||+|.+|+|..|....+++-...-+
T Consensus 67 v~~~~~~~p~~~~~~~~F~~EH~H~ddEvR~i~~G~g~Fdv~~~~~~w~ri~~e~GDli~vPag~~HrF~l~~~~~i~ai 146 (157)
T PF03079_consen 67 VISLHPDTPNYDEKLKKFFEEHTHEDDEVRYIVDGSGYFDVRDKDDVWIRIEVEKGDLIVVPAGTYHRFTLGESPYIKAI 146 (157)
T ss_dssp EEESTTTSTCHHHHHHHHCS-EE-SS-EEEEEEE----EEEE-TTCEEEEEE--TTSEEEE-TT--EEE---TTSSEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECEEEEEEEECCCEEEEEEEECCCEEECCCCCEEEEECCCCCCEEEE
T ss_conf 88549999588999998763316887079999934099999939976999999279999739996187875888878999
Q ss_pred E
Q ss_conf 8
Q T0582 210 K 210 (222)
Q Consensus 210 K 210 (222)
+
T Consensus 147 R 147 (157)
T PF03079_consen 147 R 147 (157)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 9
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein . The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see ).; GO: 0008928 mannose-1-phosphate guanylyltransferase (GDP) activity, 0005976 polysaccharide metabolic process
Probab=95.99 E-value=0.021 Score=30.27 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=55.6
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCCCC--CCCCEEEEEEEEEEEE--CC--CEECCCEEEECCCCCCEEEEECCCCCEEE
Q ss_conf 789872089848999996889744776--9886799998778982--89--32168617981899802248889882999
Q T0582 135 STSLLHEDERETVTHRKLEPGANLTSE--AAGGIEVLVLDGDVTV--ND--EVLGRNAWLRLPEGEALSATAGARGAKIW 208 (222)
Q Consensus 135 ~~~~L~~~~~e~v~L~r~~pG~~~p~h--~h~GeEi~VLeG~l~d--~~--~~~~~Gs~i~~P~g~~H~~~a~~~Gc~i~ 208 (222)
....|...++-.|-.+...||..+..+ +|..|=..|++|+... ++ ..+.+|+.++.|.|..|+..+....-+.+
T Consensus 53 ~~~~l~~g~~~~vKri~V~PG~~lSlQ~H~hR~EhWvVv~G~a~V~~~~~~~~~~~~esv~IP~g~~Hrl~n~g~~~L~i 132 (151)
T PF01050_consen 53 SYEVLDEGEGYKVKRITVKPGKRLSLQYHHHRSEHWVVVSGTAKVTIGDEEFILKEGESVYIPAGAKHRLENPGKIPLEI 132 (151)
T ss_pred CEEEEECCCCEEEEEEEECCCCCCCHHHCCCCCCEEEEEECEEEEEECCEEEEECCCCEEEECCCCEEECCCCCCCCEEE
T ss_conf 78999648987999999989983086351251438999947899999999999479998998999879824899977699
Q ss_pred EE--ECC
Q ss_conf 98--368
Q T0582 209 MK--TGH 213 (222)
Q Consensus 209 vK--TGH 213 (222)
|- +|.
T Consensus 133 IEVQ~G~ 139 (151)
T PF01050_consen 133 IEVQSGE 139 (151)
T ss_pred EEEECCC
T ss_conf 9985699
No 10
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This family contains many eukaryotic hypothetical proteins. The region featured in this family is approximately 120 residues long. Members of this family may belong to the cupin superfamily.
Probab=95.63 E-value=0.0085 Score=32.54 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=42.8
Q ss_pred CCCEECCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCEEE-EEEEEEEECCCCCC
Q ss_conf 6633158895579995026887057999999568985788877764699-99877887278611
Q T0582 18 LEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEF-IVLDGVFQDEHGDY 80 (222)
Q Consensus 18 ~~W~~~p~~Gv~~~~L~~~~~e~g~~t~lvr~~pG~~~p~H~H~~~ee~-~VL~G~~~d~~~~~ 80 (222)
..|.....+.|...-|+.++ . -...+.-+.||+..|.|.|++..-+ -||-|.++...-++
T Consensus 23 ~~~~~~~~~~itY~~I~e~~--~-Fs~~iF~lp~~~~IPLHdHP~Mtv~~kvL~Gs~~v~Syd~ 83 (196)
T PF07847_consen 23 RNWSSRSSPPITYLHIYECD--R-FSMGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDW 83 (196)
T ss_pred CCCCCCCCCCEEEEEEECCC--C-EEEEEEEECCCCCCCCCCCCCCHHHHHHEECCEEEEEECC
T ss_conf 54456789973899897179--8-0698999589998266889950222501537379999644
No 11
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface .; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1xja_B 2arc_B 2aac_B 2ara_A.
Probab=95.33 E-value=0.0049 Score=33.94 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=46.1
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEEEEEEE--CCCCC--CCCCCEEECCCCCCCCEECCC--CEEEEEE
Q ss_conf 99956898578887776469999877887--27861--168616885889822326488--8089999
Q T0582 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQ--DEHGD--YPAGTYVRNPPTTSHVPGSAE--GCTIFVK 107 (222)
Q Consensus 46 lvr~~pG~~~p~H~H~~~ee~~VL~G~~~--d~~~~--~~~G~y~~~p~gs~H~p~s~~--Gc~~~vk 107 (222)
+-.-.+...++.|.|+..+-+||++|... .++.. ..+|+.++.||+..|.-.... .|..+.-
T Consensus 7 ~~~~~~~~~~~~h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~~i~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 7 ISQRYPDWDFPPHRHDFYEIIYVLSGTGELRIDGQEYELRPGDLLLIPPGQPHSFSPDSEEDWEYFWI 74 (136)
T ss_dssp EE------SEEEE-----EEEEEEE----EE----EE------EEEE-----EEE---TTSEEEEEEE
T ss_pred EECCCCCCCCCCEECCCEEEEEEECCEEEEEECCEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEE
T ss_conf 98378988559989998999999798899999999999679989999787679999889999899999
No 12
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface .; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1xja_B 2arc_B 2aac_B 2ara_A.
Probab=94.94 E-value=0.011 Score=31.96 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=44.8
Q ss_pred EEEECCCCCCCCCCCCCEEE-EEEEEEEEE--CCCE--ECCCEEEECCCCCCEEEEECCC-CCEEEEE
Q ss_conf 99968897447769886799-998778982--8932--1686179818998022488898-8299998
Q T0582 149 HRKLEPGANLTSEAAGGIEV-LVLDGDVTV--NDEV--LGRNAWLRLPEGEALSATAGAR-GAKIWMK 210 (222)
Q Consensus 149 L~r~~pG~~~p~h~h~GeEi-~VLeG~l~d--~~~~--~~~Gs~i~~P~g~~H~~~a~~~-Gc~i~vK 210 (222)
...-.+...++.|.|...|+ +|++|.... ++.+ +.+|+.+..||+..|......+ .+..+.-
T Consensus 7 ~~~~~~~~~~~~h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~~i~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 7 ISQRYPDWDFPPHRHDFYEIIYVLSGTGELRIDGQEYELRPGDLLLIPPGQPHSFSPDSEEDWEYFWI 74 (136)
T ss_dssp EE------SEEEE-----EEEEEEE----EE----EE------EEEE-----EEE---TTSEEEEEEE
T ss_pred EECCCCCCCCCCEECCCEEEEEEECCEEEEEECCEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEE
T ss_conf 98378988559989998999999798899999999999679989999787679999889999899999
No 13
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process; PDB: 3eln_A 2b5h_A 2gh2_A 2q4s_A 2atf_A 2ic1_A 2gm6_A 3eqe_A.
Probab=94.91 E-value=0.063 Score=27.45 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=19.2
Q ss_pred CEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCC-CEEEEEEEEEEE
Q ss_conf 557999502688705799999956898578887776-469999877887
Q T0582 27 GVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDG-GEEFIVLDGVFQ 74 (222)
Q Consensus 27 Gv~~~~L~~~~~e~g~~t~lvr~~pG~~~p~H~H~~-~ee~~VL~G~~~ 74 (222)
+.+|.+|++++ .... .++-+.||...|.|.|.+ .=-+-||+|.+.
T Consensus 63 ~Y~r~ll~~~~--~~~l-~ll~W~PGq~S~IHDH~~s~g~~~vl~G~l~ 108 (175)
T PF05995_consen 63 GYTRNLLYGDG--RFEL-WLLVWGPGQGSPIHDHGGSWGVVKVLRGELT 108 (175)
T ss_dssp S-EEEEEECTS--S-EE-EEEEE-TT-B--EEE-TTSEEEEEEEE--EE
T ss_pred CEEEEEECCCC--CEEE-EEEEECCCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 74799972699--8789-9997089998877668874289999655698
No 14
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear .; PDB: 2pyt_A.
Probab=94.25 E-value=0.019 Score=30.45 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=45.0
Q ss_pred EEEEEECCC---CCEEEEEEECCCCCCCCCCCCCEEE-EEEEEEEEE--CCCE--ECCCEEEECCCCCCEEEEECCCCCE
Q ss_conf 789872089---8489999968897447769886799-998778982--8932--1686179818998022488898829
Q T0582 135 STSLLHEDE---RETVTHRKLEPGANLTSEAAGGIEV-LVLDGDVTV--NDEV--LGRNAWLRLPEGEALSATAGARGAK 206 (222)
Q Consensus 135 ~~~~L~~~~---~e~v~L~r~~pG~~~p~h~h~GeEi-~VLeG~l~d--~~~~--~~~Gs~i~~P~g~~H~~~a~~~Gc~ 206 (222)
....|...+ .-..-+++|+. +.++.. -...|+ +||||+|.. ++.. -.+||-++.|.|+.-...+ ++.|+
T Consensus 64 ~~~dv~~~~~s~~l~~Gf~~le~-~~f~wt-l~yDE~~~ViEG~l~i~~~G~~~~a~~GDvl~iPkGs~I~f~t-~~~a~ 140 (152)
T PF06249_consen 64 YIKDVVSSEESPPLSAGFMELEK-TSFPWT-LDYDEMKYVIEGELEISIDGQKYTAKPGDVLFIPKGSKITFST-PDYAR 140 (152)
T ss_dssp -----B-TT----SBB--EEEES---EEEE--SSEEEEEEEE--EEEE----EEEE----EEEE----EEEE----SEEE
T ss_pred EEEEEECCCCCCCEEEEEEEEEC-CCCCEE-EECCEEEEEEEEEEEEEECCEEEEECCCCEEEECCCCEEEEEC-CCCEE
T ss_conf 98772226789841368999977-972158-5343599999738999989989995587489978999899963-89769
Q ss_pred EEEE
Q ss_conf 9998
Q T0582 207 IWMK 210 (222)
Q Consensus 207 i~vK 210 (222)
.+--
T Consensus 141 ~~Yv 144 (152)
T PF06249_consen 141 FFYV 144 (152)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
No 15
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ . ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions . ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels , . This family also contains other proteins, whose functions are not well characterised.; PDB: 1vr3_A 2hji_A 1zrr_A.
Probab=94.21 E-value=0.042 Score=28.51 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=46.9
Q ss_pred EEEECCCC---------CCCCCCCCCCEEEEEEEEEE----ECCCCC-----CCCCCEEECCCCCCCCEE-CCCCEEEEE
Q ss_conf 99956898---------57888777646999987788----727861-----168616885889822326-488808999
Q T0582 46 IVRYAPGS---------RFSAHTHDGGEEFIVLDGVF----QDEHGD-----YPAGTYVRNPPTTSHVPG-SAEGCTIFV 106 (222)
Q Consensus 46 lvr~~pG~---------~~p~H~H~~~ee~~VL~G~~----~d~~~~-----~~~G~y~~~p~gs~H~p~-s~~Gc~~~v 106 (222)
++...|+. -+-.|.|...|--|+++|.- ++.++. +.+|+++..|+|..|--- +++-....+
T Consensus 67 v~~~~~~~p~~~~~~~~F~~EH~H~ddEvR~i~~G~g~Fdv~~~~~~w~ri~~e~GDli~vPag~~HrF~l~~~~~i~ai 146 (157)
T PF03079_consen 67 VISLHPDTPNYDEKLKKFFEEHTHEDDEVRYIVDGSGYFDVRDKDDVWIRIEVEKGDLIVVPAGTYHRFTLGESPYIKAI 146 (157)
T ss_dssp EEESTTTSTCHHHHHHHHCS-EE-SS-EEEEEEE----EEEE-TTCEEEEEE--TTSEEEE-TT--EEE---TTSSEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECEEEEEEEECCCEEEEEEEECCCEEECCCCCEEEEECCCCCCEEEE
T ss_conf 88549999588999998763316887079999934099999939976999999279999739996187875888878999
Q ss_pred EEEC
Q ss_conf 9002
Q T0582 107 KLWQ 110 (222)
Q Consensus 107 kl~q 110 (222)
+|-+
T Consensus 147 RlF~ 150 (157)
T PF03079_consen 147 RLFT 150 (157)
T ss_dssp EEE-
T ss_pred EEEC
T ss_conf 9745
No 16
>PF11699 Mif2: Mif2/CENP-C like; PDB: 2vpv_A.
Probab=93.80 E-value=0.085 Score=26.70 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=52.3
Q ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCCC-CCEEE-EEEEEEEEE--CCC--EECCCEEEECCCCCCEEEEE-CCCCCEE
Q ss_conf 78987208984899999688974477698-86799-998778982--893--21686179818998022488-8988299
Q T0582 135 STSLLHEDERETVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVTV--NDE--VLGRNAWLRLPEGEALSATA-GARGAKI 207 (222)
Q Consensus 135 ~~~~L~~~~~e~v~L~r~~pG~~~p~h~h-~GeEi-~VLeG~l~d--~~~--~~~~Gs~i~~P~g~~H~~~a-~~~Gc~i 207 (222)
+...|+++.--..-++.++||+.-+..+- ...-+ +|++|.+.. .+. +..+||++..|.|...+... +.+.|.+
T Consensus 2 ~~a~~f~~~~~~sG~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~~~kG~~f~VP~gN~Ysi~N~~~~~a~l 81 (85)
T PF11699_consen 2 KVAKLFDEKFFASGMLELPPGGEKKLKNSRNMTMVFYVIQGRVEVTINDTKFVITKGDMFQVPRGNTYSIKNISKDEARL 81 (85)
T ss_dssp EEEEE--TTS-BE-EEEE-S---EEEEE--SEEEEEEEEE--EEEEETTEEEEE----EEEE-TT-EEEEEE-----EEE
T ss_pred EEEEEECCCCEEEEEEEECCCCEECCEECCCCEEEEEEEEEEEEEEECCCEEEECCCCEEEECCCCEEEEEECCCCCEEE
T ss_conf 69998389860659999689965263305787799999980899998785999857989996799989989899993799
Q ss_pred EE
Q ss_conf 99
Q T0582 208 WM 209 (222)
Q Consensus 208 ~v 209 (222)
+.
T Consensus 82 fF 83 (85)
T PF11699_consen 82 FF 83 (85)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 17
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear .; PDB: 2pyt_A.
Probab=93.35 E-value=0.057 Score=27.70 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=45.2
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEEEEEEEC--CCC--CCCCCCEEECCCCCCCCEECCCCEEEEEEEE
Q ss_conf 999568985788877764699998778872--786--1168616885889822326488808999900
Q T0582 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQD--EHG--DYPAGTYVRNPPTTSHVPGSAEGCTIFVKLW 109 (222)
Q Consensus 46 lvr~~pG~~~p~H~H~~~ee~~VL~G~~~d--~~~--~~~~G~y~~~p~gs~H~p~s~~Gc~~~vkl~ 109 (222)
++++.. +.|+. .=...|-.|||||.|.. +.. ...+|+-++.|.|+.-+-.++++|.+|.-..
T Consensus 81 f~~le~-~~f~w-tl~yDE~~~ViEG~l~i~~~G~~~~a~~GDvl~iPkGs~I~f~t~~~a~~~Yv~y 146 (152)
T PF06249_consen 81 FMELEK-TSFPW-TLDYDEMKYVIEGELEISIDGQKYTAKPGDVLFIPKGSKITFSTPDYARFFYVTY 146 (152)
T ss_dssp -EEEES---EEE-E-SSEEEEEEEE--EEEE----EEEE----EEEE----EEEE---SEEEEEEEEE
T ss_pred EEEEEC-CCCCE-EEECCEEEEEEEEEEEEEECCEEEEECCCCEEEECCCCEEEEECCCCEEEEEEEC
T ss_conf 999977-97215-8534359999973899998998999558748997899989996389769999977
No 18
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process; PDB: 3eln_A 2b5h_A 2gh2_A 2q4s_A 2atf_A 2ic1_A 2gm6_A 3eqe_A.
Probab=92.99 E-value=0.11 Score=26.09 Aligned_cols=68 Identities=24% Similarity=0.257 Sum_probs=52.8
Q ss_pred CEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCE-EE-EEEEEEEEE------CC-----------CEECCCEEEECCCC
Q ss_conf 6278987208984899999688974477698867-99-998778982------89-----------32168617981899
Q T0582 133 GISTSLLHEDERETVTHRKLEPGANLTSEAAGGI-EV-LVLDGDVTV------ND-----------EVLGRNAWLRLPEG 193 (222)
Q Consensus 133 Gv~~~~L~~~~~e~v~L~r~~pG~~~p~h~h~Ge-Ei-~VLeG~l~d------~~-----------~~~~~Gs~i~~P~g 193 (222)
+-....|+.++.-.+.++-|.||...|.|.|++. -+ -||+|++.. +. .....|.....+++
T Consensus 63 ~Y~r~ll~~~~~~~l~ll~W~PGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 142 (175)
T PF05995_consen 63 GYTRNLLYGDGRFELWLLVWGPGQGSPIHDHGGSWGVVKVLRGELTETRYRWPDDEGAPLQVISRSRLLPAGVTYVFDPD 142 (175)
T ss_dssp S-EEEEEECTSS-EEEEEEE-TT-B--EEE-TTSEEEEEEEE--EEEEEEEE--SSS-EEEEEEEEEEETT-EEEE-TT-
T ss_pred CEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCEEEEECCC
T ss_conf 74799972699878999970899988776688742899996556987886537876772111352796389819972998
Q ss_pred CCEEEEE
Q ss_conf 8022488
Q T0582 194 EALSATA 200 (222)
Q Consensus 194 ~~H~~~a 200 (222)
..|+...
T Consensus 143 ~IH~v~n 149 (175)
T PF05995_consen 143 GIHRVEN 149 (175)
T ss_dssp -EEEEEE
T ss_pred CEEEECC
T ss_conf 7878505
No 19
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 In eukaryotes 3-hydroxyanthranilic acid dioxygenase (1.13.11.6 from EC) is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid .The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway .; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process; PDB: 3fe5_A 2qnk_A 1zvf_B 1yfy_A 1yfw_A 1yfx_A 1yfu_A.
Probab=92.66 E-value=0.21 Score=24.34 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=65.1
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEE---CCCC-----CCCCCCEEECCCCCCC
Q ss_conf 5889557999502688705799999956898578887776469999877887---2786-----1168616885889822
Q T0582 23 SPMKGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ---DEHG-----DYPAGTYVRNPPTTSH 94 (222)
Q Consensus 23 ~p~~Gv~~~~L~~~~~e~g~~t~lvr~~pG~~~p~H~H~~~ee~~VL~G~~~---d~~~-----~~~~G~y~~~p~gs~H 94 (222)
...|=|--|.|+. +.++.++==.|+.+...|.-++.|.+|-|+|.+. .++| ....|+-+..|+...|
T Consensus 19 lLkPPV~Nk~l~~-----~d~~VMvVGGPN~R~DyH~n~~eE~FYQ~kG~m~Lkv~e~g~~~di~I~EGemfLLP~~vPH 93 (151)
T PF06052_consen 19 LLKPPVGNKCLYN-----GDFIVMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVEEGKFKDIPIREGEMFLLPANVPH 93 (151)
T ss_dssp GSSTTT--EEEEE-----SSEEEEEE---B--SSBBE-SS-EEEEEEE-EEEEEEEE-SSEEEEEE----EEEE-TT--E
T ss_pred HCCCCCCCEEEEC-----CCEEEEEECCCCCCCCCCCCCCHHHEEECCCCEEEEEECCCCCEEEEECCCCEEECCCCCCC
T ss_conf 4199958788862-----87399996388766626578521311551685799997399612568479888765898998
Q ss_pred CEECCCCEEEEEEEECCCC
Q ss_conf 3264888089999002795
Q T0582 95 VPGSAEGCTIFVKLWQFDP 113 (222)
Q Consensus 95 ~p~s~~Gc~~~vkl~q~~~ 113 (222)
+|.-.++..-+|--+.=.+
T Consensus 94 SP~R~~~TiGlViEr~R~~ 112 (151)
T PF06052_consen 94 SPQRFADTIGLVIERKRPE 112 (151)
T ss_dssp EEEEEEEEEEEEEEE---T
T ss_pred CCCCCCCCEEEEEEEECCC
T ss_conf 9987899578999831699
No 20
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures . Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues . Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity . Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold . Pirin was identified to be a metal-binding protein , and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion . Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilizing the formation of the p50·Bcl-3·DNA complex . Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation . However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex . ; PDB: 2p17_A 1j1l_A.
Probab=92.13 E-value=0.065 Score=27.36 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=47.8
Q ss_pred EEECCCCCCCCCCCCCC-EEEEEEEEEEECCCC--CCCCCCEEECCCCCCCCEECC-CCEEEEEEEEC
Q ss_conf 99568985788877764-699998778872786--116861688588982232648-88089999002
Q T0582 47 VRYAPGSRFSAHTHDGG-EEFIVLDGVFQDEHG--DYPAGTYVRNPPTTSHVPGSA-EGCTIFVKLWQ 110 (222)
Q Consensus 47 vr~~pG~~~p~H~H~~~-ee~~VL~G~~~d~~~--~~~~G~y~~~p~gs~H~p~s~-~Gc~~~vkl~q 110 (222)
++++||+.+......+. --+||++|....++. .+.+|+.+....|..-.-.+. ++|-+++.-++
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~i~~~~~~~~~~~~~~l~~g~~i~l~a~~~~a~~lll~G~ 71 (104)
T PF05726_consen 4 ITLEPGAEFTLPLPEGFNAFIYVLEGEVSIGGEEATLPAGQLAVLEDGDEITLTAGEEGARFLLLGGE 71 (104)
T ss_dssp EEE----EEEEEE------EEEEEE--EEE--TTEEE-TTEEEEE---EEEEEE-SSSSEEEEEEE--
T ss_pred EEECCCCEEEEECCCCCEEEEEEEECEEEECCCCCEECCCCEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 99889998970169997899999948699989631188984899889988999978998099999773
No 21
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures . Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues . Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity . Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold . Pirin was identified to be a metal-binding protein , and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion . Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilizing the formation of the p50·Bcl-3·DNA complex . Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation . However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex . ; PDB: 1tq5_A 1j1l_A 2p17_A 2vec_A.
Probab=91.81 E-value=0.078 Score=26.91 Aligned_cols=46 Identities=26% Similarity=0.520 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCEEE--EEEEEEEEECC-----CEECCCE--EEECCCCCCEEEEE
Q ss_conf 97447769886799--99877898289-----3216861--79818998022488
Q T0582 155 GANLTSEAAGGIEV--LVLDGDVTVND-----EVLGRNA--WLRLPEGEALSATA 200 (222)
Q Consensus 155 G~~~p~h~h~GeEi--~VLeG~l~d~~-----~~~~~Gs--~i~~P~g~~H~~~a 200 (222)
+..++.|.|.|.|+ |||+|++...+ +++.+|+ |+..-.|..|+-..
T Consensus 39 ~~gf~~HPHrg~eivTyvl~G~i~H~DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~ 93 (107)
T PF02678_consen 39 GAGFPPHPHRGFEIVTYVLEGEIEHRDSLGNHGVIRPGDVQWMTAGSGIVHSEMN 93 (107)
T ss_dssp --EEEEEE-CSEEEEEEEEE--EEEEES---EEEE----EEEEE-----EEEEEE
T ss_pred CCCCCCCCCCCEEEEEEECCCEEEECCCCCCCEEECCCEEEEEECCCCCEEEEEC
T ss_conf 6778888889988999971788986138999567899808998588980776704
No 22
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 3es4_A 1sfn_A 1sef_A 1rc6_B 2k9z_A 1o5u_B 1lkn_A 3bcw_B.
Probab=90.11 E-value=0.36 Score=23.00 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=7.5
Q ss_pred ECCCEEEECCCCCCEE
Q ss_conf 1686179818998022
Q T0582 182 LGRNAWLRLPEGEALS 197 (222)
Q Consensus 182 ~~~Gs~i~~P~g~~H~ 197 (222)
+.+||.+..|+|..-.
T Consensus 48 ~~aGD~~~~p~G~~~~ 63 (74)
T PF05899_consen 48 FGAGDAVVFPKGWTGT 63 (74)
T ss_dssp E-TT-EEEE-TTSEEE
T ss_pred ECCCCEEEECCCCEEE
T ss_conf 8598599999999899
No 23
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process; PDB: 1ey2_A 1eyb_A.
Probab=88.42 E-value=0.53 Score=22.03 Aligned_cols=103 Identities=22% Similarity=0.390 Sum_probs=59.6
Q ss_pred CCCCCCEEEEECCCCCCEECCCC---CEE----EEEEECCCCCEEE-EEEEEEECCCCCCCCC---CCCCCEEEEEEEEE
Q ss_conf 56778416770564663315889---557----9995026887057-9999995689857888---77764699998778
Q T0582 4 NADFTKPVVIDTDQLEWRPSPMK---GVE----RRMLDRIGGEVAR-ATSIVRYAPGSRFSAH---THDGGEEFIVLDGV 72 (222)
Q Consensus 4 ~~d~~~~~~v~~~~~~W~~~p~~---Gv~----~~~L~~~~~e~g~-~t~lvr~~pG~~~p~H---~H~~~ee~~VL~G~ 72 (222)
.+++++- ...+..+.|.|.+.+ .++ ++.+-..++-..+ -..+--|.++.+.... ..+|.|.+++-+|.
T Consensus 80 ~~~~~~~-~~~p~~lrw~p~~~p~~~~~dfvdgl~t~~g~gd~~~~~g~ai~~y~~~~sM~~~~f~NaDGD~Li~~~~G~ 158 (426)
T PF04209_consen 80 TAPFSEV-HPTPNQLRWKPFPLPTKEPTDFVDGLRTVAGAGDPLSNAGLAIHIYAANASMDDRYFYNADGDELIVPQQGS 158 (426)
T ss_dssp ---CCCS-----S-B---S----TT----S----EEEE----CCCT---EEEE--B-S---SEEEEE----EEEEEEE--
T ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECC
T ss_conf 7982025-898543002787655568886211510012677522247727999964788787136847887899998487
Q ss_pred EE--CCCC--CCCCCCEEECCCCCCCCEECCCCEEEEEE
Q ss_conf 87--2786--11686168858898223264888089999
Q T0582 73 FQ--DEHG--DYPAGTYVRNPPTTSHVPGSAEGCTIFVK 107 (222)
Q Consensus 73 ~~--d~~~--~~~~G~y~~~p~gs~H~p~s~~Gc~~~vk 107 (222)
+. .+-| ++.+|+|+..|.|.++...-++-+..++-
T Consensus 159 ~~l~Te~G~L~v~pgd~~vIPRG~~frv~~~~p~rgyi~ 197 (426)
T PF04209_consen 159 LRLRTEFGRLEVRPGDYVVIPRGTRFRVELPGPARGYII 197 (426)
T ss_dssp EEEEE----EEE-TTEEEEE-----EEEE-SSSBE-EEE
T ss_pred EEEEEECCCEEECCCCEEEECCCCEEEEEECCCCEEEEE
T ss_conf 899982305585379789978876799966898459999
No 24
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This group contains proteins which have a wide range of Swiss-Prot annotations, from 'hypothetical protein', 'lipopolysaccharide biosynthesis protein' to 'bifunctional acetyl transferase/isomerase'. ; PDB: 2pa7_A 2pam_B 2pae_A 2pak_A.
Probab=66.92 E-value=2.8 Score=17.85 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=35.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCEE-EEEEEEEEEC----CCC--CC---CCCCEEECCCCCCCCEE-CCCCEEEEEEE
Q ss_conf 05799999956898578887776469-9998778872----786--11---68616885889822326-48880899990
Q T0582 40 VARATSIVRYAPGSRFSAHTHDGGEE-FIVLDGVFQD----EHG--DY---PAGTYVRNPPTTSHVPG-SAEGCTIFVKL 108 (222)
Q Consensus 40 ~g~~t~lvr~~pG~~~p~H~H~~~ee-~~VL~G~~~d----~~~--~~---~~G~y~~~p~gs~H~p~-s~~Gc~~~vkl 108 (222)
..|.-.+.-..+|..=-.|.|..-++ +++++|.|.- +.. .+ .+...+.-|||-.|.-. -.+||+++|--
T Consensus 31 ikRvyyi~~~~~g~~RG~HaHk~~~q~~i~~~Gs~~v~lddg~~~~~i~L~~~~~gL~Ipp~~w~~~~~fs~~~vlLVlA 110 (131)
T PF05523_consen 31 IKRVYYIYDVPPGIIRGWHAHKKLQQVFICVSGSFKVVLDDGRERQEIILNSPNKGLYIPPGIWHEMYNFSEDAVLLVLA 110 (131)
T ss_dssp --EEEEEES------E-EEEESS--EEEEEEE--EEEEEE----EEEEEE--TT---EE----EEEEE---TT-EEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEECCCCEEEEECCCHHHHHHCCCCCCEEEEEC
T ss_conf 67799997389997404201643309999982789999926995289997999859996883242665269994999985
Q ss_pred E-CCCCCC
Q ss_conf 0-279566
Q T0582 109 W-QFDPAD 115 (222)
Q Consensus 109 ~-q~~~~d 115 (222)
- .|++.|
T Consensus 111 s~~yd~~D 118 (131)
T PF05523_consen 111 SEYYDESD 118 (131)
T ss_dssp SS---GGG
T ss_pred CCCCCCHH
T ss_conf 87888121
No 25
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols . Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum , which interacts with endogenous steroid hormones, such as progesterone and testosterone . It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine . Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=60.72 E-value=2.3 Score=18.28 Aligned_cols=80 Identities=21% Similarity=0.156 Sum_probs=50.1
Q ss_pred CCCCCC--EEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEE-EEEEEEEEEE------CCCEECCCEEEECCCCCCEEE
Q ss_conf 666686--2789872089848999996889744776988679-9998778982------893216861798189980224
Q T0582 128 GAPVEG--ISTSLLHEDERETVTHRKLEPGANLTSEAAGGIE-VLVLDGDVTV------NDEVLGRNAWLRLPEGEALSA 198 (222)
Q Consensus 128 ~~~~~G--v~~~~L~~~~~e~v~L~r~~pG~~~p~h~h~GeE-i~VLeG~l~d------~~~~~~~Gs~i~~P~g~~H~~ 198 (222)
+...+| -++++||..-.|.+.+.-.+-|+.--.-.|-..- ..||+|+..- +-.+|.+||-.+.+.|+..+.
T Consensus 80 fnnaGGamgsm~iLhaSitEYliiFGTpvgTeGhtGrh~Add~ftIL~G~~~~~~~G~~~~evy~pG~~~~l~rg~ak~y 159 (216)
T PF04622_consen 80 FNNAGGAMGSMCILHASITEYLIIFGTPVGTEGHTGRHWADDYFTILSGEQTAWSPGSLEPEVYKPGDSHHLPRGEAKQY 159 (216)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEECCCCEEEECCCCEEEE
T ss_conf 98588356635677670787998736867888887644530078888535998669997753636899778369714799
Q ss_pred EECCCCCEEE
Q ss_conf 8889882999
Q T0582 199 TAGARGAKIW 208 (222)
Q Consensus 199 ~a~~~Gc~i~ 208 (222)
.- +.+|-++
T Consensus 160 ~m-~~~twaL 168 (216)
T PF04622_consen 160 QM-PPGTWAL 168 (216)
T ss_pred EE-CCCEEEE
T ss_conf 75-7984899
No 26
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilized by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate .; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 2ixl_B 1nzc_A 1nyw_A 1nxm_A 1pm7_B 2ixc_A 1upi_A 2c0z_A 1oi6_A 1ofn_B ....
Probab=55.42 E-value=4.4 Score=16.63 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=62.4
Q ss_pred ECCCCCEEEEEEECCCCCEEEEEEEEEE--------------------CCCCCCCCCCCCC----CEEEEEEEEEEECCC
Q ss_conf 1588955799950268870579999995--------------------6898578887776----469999877887278
Q T0582 22 PSPMKGVERRMLDRIGGEVARATSIVRY--------------------APGSRFSAHTHDG----GEEFIVLDGVFQDEH 77 (222)
Q Consensus 22 ~~p~~Gv~~~~L~~~~~e~g~~t~lvr~--------------------~pG~~~p~H~H~~----~ee~~VL~G~~~d~~ 77 (222)
+++.+|+....+....+++|.++.+.+. .+|..=-.|.|.. ..-+.|+.|...|--
T Consensus 3 ~t~I~Gv~~i~p~~~~D~RG~f~e~~~~~~~~~~~~~~~~~Q~n~S~S~~gvlRGlH~q~~p~~q~Klv~~v~G~v~dV~ 82 (176)
T PF00908_consen 3 ETKIEGVYIIEPKVFPDERGFFMETFREDEFAEAGLPPEFVQDNQSVSKKGVLRGLHFQSPPHAQAKLVRCVRGEVFDVV 82 (176)
T ss_dssp E-SSTTSEEEEEEEE------EEEEEEHHHHHHHCG---EEEEEEEEEETTBEE-EEEESSTT---EEEEEEE-EEEEEE
T ss_pred CCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCEEEEECCCCEEEEE
T ss_conf 57489879986970426983892202368899735887646358998504578987872799998459999269599999
Q ss_pred CC-------CC----------CCCEEECCCCCCCCEEC-CCCEEEEEEEE-CCCCCCCCEEEECC
Q ss_conf 61-------16----------86168858898223264-88808999900-27956656078076
Q T0582 78 GD-------YP----------AGTYVRNPPTTSHVPGS-AEGCTIFVKLW-QFDPADRTQFSKNM 123 (222)
Q Consensus 78 ~~-------~~----------~G~y~~~p~gs~H~p~s-~~Gc~~~vkl~-q~~~~d~~~v~idt 123 (222)
.| |+ .+--++-|+|..|+-.+ .+.|++..|.- .|.++++.-++-|.
T Consensus 83 VDlR~~SpTfG~~~~~~L~~~n~~~l~IP~G~aHGF~~l~d~a~~~Y~~~~~y~p~~e~gi~~~D 147 (176)
T PF00908_consen 83 VDLRPGSPTFGKWEGVELSAENPRQLYIPPGFAHGFQALSDDATVLYKCSEPYDPEDERGIRWND 147 (176)
T ss_dssp E--BCTSTT---EEEEEE-TTT--EEEE----BEEEEECSSEEEEEEEESS---GGGEEE--TT-
T ss_pred EECCCCCCCCCCEEEEEECCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99989889888389999778789689838850458898159818999779850876613507999
No 27
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.
Probab=49.05 E-value=5.6 Score=16.03 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=8.4
Q ss_pred CCCEEEEEEEECCCC
Q ss_conf 888089999002795
Q T0582 99 AEGCTIFVKLWQFDP 113 (222)
Q Consensus 99 ~~Gc~~~vkl~q~~~ 113 (222)
..|..+.+.|+.-++
T Consensus 115 RgGG~l~i~L~~s~~ 129 (225)
T PF07385_consen 115 RGGGNLVIELYNSDP 129 (225)
T ss_pred CCCCEEEEEEECCCC
T ss_conf 379639999954587
No 28
>PF04962 KduI: KduI/IolB family; InterPro: IPR007045 This family of bacterial proteins have been characterised as, 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (5.3.1.17 from EC), an enzyme involved in pectin degradation. 4-deoxy-L-threo-5-hexosulose uronate = 3-deoxy-D-glycero-2,5-hexodiulosonate ; GO: 0008697 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity, 0045490 pectin catabolic process; PDB: 2qjv_B 1x8m_E 1xru_B 1ywk_D.
Probab=45.07 E-value=6.5 Score=15.66 Aligned_cols=160 Identities=14% Similarity=0.080 Sum_probs=85.9
Q ss_pred EEEEECCCCCCCCCCCCCCEE--EEEEEEEEECCC-C----CC--------CCCCEEECCCCCCCCEECCCCEEEEEEEE
Q ss_conf 999956898578887776469--999877887278-6----11--------68616885889822326488808999900
Q T0582 45 SIVRYAPGSRFSAHTHDGGEE--FIVLDGVFQDEH-G----DY--------PAGTYVRNPPTTSHVPGSAEGCTIFVKLW 109 (222)
Q Consensus 45 ~lvr~~pG~~~p~H~H~~~ee--~~VL~G~~~d~~-~----~~--------~~G~y~~~p~gs~H~p~s~~Gc~~~vkl~ 109 (222)
.++++++|..+..- .+..| ++.|+|...-.- | .. ++.+.++.|.|++-...+..+|-+.+---
T Consensus 30 ~~l~L~~g~~~~~~--~~~~E~~vv~l~G~~~V~~dg~~~~~lg~R~svF~~~~d~lYvp~g~~~~v~a~~~a~~~~~sa 107 (261)
T PF04962_consen 30 RVLRLEAGESLEFE--LGRRELGVVNLGGKGTVTVDGEEFYELGGRASVFDGPPDALYVPRGSKVVVFASTDAEFAVCSA 107 (261)
T ss_dssp CCEEEETT-EEECT--CCSEEEEEEEEE-EEEEEETTEEEEEE-TTSSGGGS--EEEEE-SS--EEEEECCEEEEEEEBE
T ss_pred EEEEECCCCEECCC--CCCCEEEEEECCCEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEEEC
T ss_conf 69995699876235--8980899999067799997881665005756556789868997999849999868978999934
Q ss_pred CCCCCCCCEEEECCCHHC---CCCC-CCEEEEEEECC-C----CCEEEEEEECCC---CCCCCCCCCC---------EEE
Q ss_conf 279566560780761350---6666-86278987208-9----848999996889---7447769886---------799
Q T0582 110 QFDPADRTQFSKNMEAEL---GAPV-EGISTSLLHED-E----RETVTHRKLEPG---ANLTSEAAGG---------IEV 168 (222)
Q Consensus 110 q~~~~d~~~v~idt~~~~---~~~~-~Gv~~~~L~~~-~----~e~v~L~r~~pG---~~~p~h~h~G---------eEi 168 (222)
--+. +....-+...+.. +... --+++..+... . .-.+..+. .|| .+.|.|.|.- ||+
T Consensus 108 pa~~-~~p~~~i~~~~~~~~~~G~g~~~R~V~~~~~~~~~~a~~Llvget~-tp~g~WsSyPpHkHd~~~~~~e~~lEEi 185 (261)
T PF04962_consen 108 PAHK-TYPTRLIRPEDVRVEERGAGNNSRTVNNILDPDVPPACRLLVGETI-TPGGNWSSYPPHKHDRRMEPDESELEEI 185 (261)
T ss_dssp E-SS-----EEE-TTTS--EEE--CCCTEEEEEEESTTT---SS-EEEEEE-E----EES-SEEE-CCEEEESEECTEEE
T ss_pred CCCC-CCCCEEECHHHCCEEEECCCCCCEEEEEEECCCCCCCCEEEEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 2589-8887898989898287458977279588147987641127999996-4899757879925898677765554138
Q ss_pred EEEEEE----EE------EC-----CCEECCCEEEECCCCCCEEEEECCCCCEEEEE
Q ss_conf 998778----98------28-----93216861798189980224888988299998
Q T0582 169 LVLDGD----VT------VN-----DEVLGRNAWLRLPEGEALSATAGARGAKIWMK 210 (222)
Q Consensus 169 ~VLeG~----l~------d~-----~~~~~~Gs~i~~P~g~~H~~~a~~~Gc~i~vK 210 (222)
|--+.. |. ++ .-...-|+.+..|.| -| |....-|-.+|.-
T Consensus 186 Yyf~~~p~~Gf~~qrvy~~~~~~d~~~~V~~~d~VlvP~g-yH-pv~a~pGy~~Yyl 240 (261)
T PF04962_consen 186 YYFRFDPPQGFGFQRVYTDDRSIDEHYVVRNGDAVLVPRG-YH-PVHAAPGYDNYYL 240 (261)
T ss_dssp EEEEEETTS--EEEEEE-TTSSSEEEEEEETTEEEEE-TT----SEEE---BEEEEE
T ss_pred EEEECCCCCCEEEEEEECCCCCCCEEEEEECCCEEEECCC-CC-CCCCCCCCCCEEE
T ss_conf 9987378644489987779999857899978989984998-78-8422686012788
No 29
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues , , . The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1wgp_A 3gyd_B 3e97_A 3d0s_B 2pqq_C 2oz6_A 2gzw_A 1o3q_A 1lb2_A 1i6x_A ....
Probab=40.52 E-value=7.7 Score=15.24 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=34.3
Q ss_pred EEEECCCCCCCCCCCCCEEE-EEEEEEEEE----CCC------EECCCEEEECCC-----CCCEEEEECCCCCEEEEE
Q ss_conf 99968897447769886799-998778982----893------216861798189-----980224888988299998
Q T0582 149 HRKLEPGANLTSEAAGGIEV-LVLDGDVTV----NDE------VLGRNAWLRLPE-----GEALSATAGARGAKIWMK 210 (222)
Q Consensus 149 L~r~~pG~~~p~h~h~GeEi-~VLeG~l~d----~~~------~~~~Gs~i~~P~-----g~~H~~~a~~~Gc~i~vK 210 (222)
|.++++|..+-........+ ||++|.+.. ..+ .+.+|+++-..+ -..++..| .+.|.+|.-
T Consensus 1 ~~~~~~g~~i~~~g~~~~~iy~i~~G~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a-~~~~~v~~i 77 (91)
T PF00027_consen 1 LKSYPKGEVIIEQGEPPDHIYFILSGEVRVYSEDNNGKEQIISFLGPGDFFGEYALLNGQPSQYTIIA-LTDCEVYRI 77 (91)
T ss_dssp -EEECTTEEEE-TTSBSSEEEEEEE-EEEEEEESTSEEEEEEEEECTTEEECGHHHHHTSBSSSEEEE-EEEEEEEEE
T ss_pred CEEECCCCEEEECCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEECCEEEECCHHHCCCCCCEEEEEE-CCCEEEEEE
T ss_conf 96989999999599868889999787999986323201245665203006462566179852589999-678899998
No 30
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR013109 This family contains many hypothetical proteins that belong to the cupin superfamily.; PDB: 2ilm_A 1h2k_A 1h2m_A 1mze_A 2cgn_A 1yci_A 1mzf_A 1iz3_A 3d8c_A 1h2l_A ....
Probab=39.25 E-value=8.1 Score=15.12 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=11.2
Q ss_pred CCCCEEECCCCCCCCEECCC
Q ss_conf 68616885889822326488
Q T0582 81 PAGTYVRNPPTTSHVPGSAE 100 (222)
Q Consensus 81 ~~G~y~~~p~gs~H~p~s~~ 100 (222)
.+|+.++.|+|..|...+.+
T Consensus 181 ~pGD~LYiP~g~~H~~~~~~ 200 (319)
T PF08007_consen 181 EPGDVLYIPRGWWHYAEALD 200 (319)
T ss_dssp ----EEEE-TT-EEEEEESS
T ss_pred CCCCEEEECCCCEEEEEECC
T ss_conf 89988997899659879889
No 31
>PF02373 JmjC: JmjC domain; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice .There is evidence of domain swapping within the jumonji family of transcription factors . This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily .; PDB: 2w2i_A 2q8e_B 2ox0_A 2q8d_B 2gp5_B 2oq6_A 2os2_A 2p5b_B 2vd7_A 2ot7_A ....
Probab=35.27 E-value=6.4 Score=15.72 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=15.2
Q ss_pred EECCCEEEECCCCCCEEEEEC
Q ss_conf 216861798189980224888
Q T0582 181 VLGRNAWLRLPEGEALSATAG 201 (222)
Q Consensus 181 ~~~~Gs~i~~P~g~~H~~~a~ 201 (222)
+..+|+.+..|+|.-|+.+..
T Consensus 84 vq~pGe~v~ip~g~~H~V~n~ 104 (114)
T PF02373_consen 84 VQRPGEFVFIPPGWYHQVFNL 104 (114)
T ss_dssp EE----EEEE----EEEEEES
T ss_pred EECCCCEEEECCCCEEEEEEC
T ss_conf 887999999899964999917
No 32
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This family consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes .; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1j3q_A 1j3p_B 1j3r_B 1qxj_B 2gc1_B 1x8e_A 2gc2_B 1qy4_A 1qxr_A 2gc0_B ....
Probab=29.59 E-value=12 Score=14.18 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=44.7
Q ss_pred EEEEEEECCCCCC------CCCCCCC-------CEEEEEEEEE----EECCCC----C-----CCCCCEEECCCCCCCCE
Q ss_conf 9999995689857------8887776-------4699998778----872786----1-----16861688588982232
Q T0582 43 ATSIVRYAPGSRF------SAHTHDG-------GEEFIVLDGV----FQDEHG----D-----YPAGTYVRNPPTTSHVP 96 (222)
Q Consensus 43 ~t~lvr~~pG~~~------p~H~H~~-------~ee~~VL~G~----~~d~~~----~-----~~~G~y~~~p~gs~H~p 96 (222)
..-+..+.||..- -=|.|+. .|-++||+|. |.+.++ + ..+|+.+.-||+-.|..
T Consensus 51 ~~giT~i~PG~vG~E~~~T~GH~H~~~p~~~~~pE~Y~vl~G~g~~llq~~~~~~v~~~~~v~~~~G~~v~IPp~~~H~t 130 (182)
T PF06560_consen 51 RYGITVIPPGKVGGEYFMTKGHYHPISPSGWSYPEVYEVLKGEGLILLQKPDGDEVGDVIAVEAKPGDVVYIPPGYAHRT 130 (182)
T ss_dssp EEEEEEE-------B--B----EESS----TT--EEEEEEE-----EEE---------EEE-------EEEE-TT-EEE-
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCCCEEEEEEEECCCCEEEECCCCEEEE
T ss_conf 73139977855177321466702786556789885899993869999984787751069999967996899699924998
Q ss_pred ECCCC-EEEEEEEE
Q ss_conf 64888-08999900
Q T0582 97 GSAEG-CTIFVKLW 109 (222)
Q Consensus 97 ~s~~G-c~~~vkl~ 109 (222)
..... -++|.-.+
T Consensus 131 iN~g~~~Lv~~~~~ 144 (182)
T PF06560_consen 131 INTGDEPLVFAAWV 144 (182)
T ss_dssp B------EEEEEEE
T ss_pred ECCCCCCEEEEEEE
T ss_conf 71899868999998
No 33
>PF11149 DUF2924: Protein of unknown function (DUF2924)
Probab=24.05 E-value=15 Score=13.58 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=24.1
Q ss_pred EEEEECCCCCCCCCCCCCE-EEEEEEEEEEECCCEECC
Q ss_conf 9999688974477698867-999987789828932168
Q T0582 148 THRKLEPGANLTSEAAGGI-EVLVLDGDVTVNDEVLGR 184 (222)
Q Consensus 148 ~L~r~~pG~~~p~h~h~Ge-Ei~VLeG~l~d~~~~~~~ 184 (222)
.-..+.||+.+-+...+-+ ++.|++..|.+++..|..
T Consensus 77 ~~~~~~pGT~L~Rew~G~~h~V~V~~dGfey~Gr~y~S 114 (136)
T PF11149_consen 77 DPRLPAPGTRLVREWNGREHRVTVLEDGFEYQGRRYRS 114 (136)
T ss_pred CCCCCCCCCEEEEEECCEEEEEEEECCCEEECCEECCC
T ss_conf 65688998489998899789999957976699834356
No 34
>PF11142 DUF2917: Protein of unknown function (DUF2917)
Probab=23.63 E-value=15 Score=13.53 Aligned_cols=46 Identities=33% Similarity=0.440 Sum_probs=28.9
Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEEE------CCCEECCCEEEECCCCCC
Q ss_conf 9968897447769886799998778982------893216861798189980
Q T0582 150 RKLEPGANLTSEAAGGIEVLVLDGDVTV------NDEVLGRNAWLRLPEGEA 195 (222)
Q Consensus 150 ~r~~pG~~~p~h~h~GeEi~VLeG~l~d------~~~~~~~Gs~i~~P~g~~ 195 (222)
..++||...+..-..+.++-|.+|.+-. ++-.+.+|+-++++.|..
T Consensus 2 f~L~~g~~~~~r~~~~~~l~v~~G~vWlT~~g~~~D~~L~~G~sl~l~~g~~ 53 (63)
T PF11142_consen 2 FELAPGETMSLRARRGTRLRVHEGRVWLTREGDPDDYWLQPGDSLRLRRGER 53 (63)
T ss_pred EEECCCCEEEEECCCCCEEEECCCCEEEECCCCCCCEEECCCCEEEECCCCE
T ss_conf 8917987177753788489993005899678998887986998899589999
No 35
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway .; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=23.59 E-value=15 Score=13.53 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=26.9
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEEEEEEEE--CC-CC---CCCCCCEEECCCCCCCCEECCC
Q ss_conf 999956898578887776469999877887--27-86---1168616885889822326488
Q T0582 45 SIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ--DE-HG---DYPAGTYVRNPPTTSHVPGSAE 100 (222)
Q Consensus 45 ~lvr~~pG~~~p~H~H~~~ee~~VL~G~~~--d~-~~---~~~~G~y~~~p~gs~H~p~s~~ 100 (222)
-.-.+.||+...-|.-..-|-+|+++|.=. +- +| ...+|+........+|..+..+
T Consensus 38 h~T~I~aGte~~~~YknHlEavyci~G~Geie~~~~G~~~~i~pGt~Y~Ld~hD~H~lra~~ 99 (126)
T PF06339_consen 38 HITTIYAGTETHIHYKNHLEAVYCIEGEGEIEDLADGEVHPIKPGTMYALDKHDRHYLRAKT 99 (126)
T ss_pred EEEEEECCCEEEEEECCCEEEEEEECCCEEEEECCCCCEEECCCCEEEECCCCCCEEEECCC
T ss_conf 99899579706787336268999984618999868983987169739831688750796689
No 36
>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses . However, their precise function in this regard is as yet unknown.
Probab=20.09 E-value=18 Score=13.10 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=17.4
Q ss_pred CCCCEEEEEEEEEEECCCC-CCCCCC
Q ss_conf 7764699998778872786-116861
Q T0582 60 HDGGEEFIVLDGVFQDEHG-DYPAGT 84 (222)
Q Consensus 60 H~~~ee~~VL~G~~~d~~~-~~~~G~ 84 (222)
...--|+.||+|.|.+++. .|....
T Consensus 48 ss~kleivvL~GDF~~~~~~~WT~ee 73 (302)
T PF07887_consen 48 SSAKLEIVVLDGDFNDDDDENWTEEE 73 (302)
T ss_pred CCEEEEEEEECCCCCCCCCCCCCHHH
T ss_conf 73289999974735888756679889
Done!