Query T0583 LR17, , 152 residues
Match_columns 152
No_of_seqs 111 out of 865
Neff 9.3
Searched_HMMs 11830
Date Sun Jun 13 15:23:55 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0583.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0583.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03364 Polyketide_cyc: Polyk 99.9 3.4E-22 2.8E-26 157.3 15.6 127 10-141 1-130 (130)
2 PF10604 Polyketide_cyc2: Poly 99.7 6.5E-16 5.5E-20 117.5 13.3 136 1-145 1-139 (139)
3 PF06240 COXG: Carbon monoxide 99.2 3E-10 2.5E-14 81.6 12.8 131 7-146 2-137 (140)
4 PF01852 START: START domain; 98.4 4.3E-05 3.7E-09 49.0 18.8 140 3-146 47-202 (206)
5 PF00407 Bet_v_1: Pathogenesis 98.3 5.6E-05 4.8E-09 48.3 16.7 116 3-121 5-127 (151)
6 PF10698 DUF2505: Protein of u 98.1 0.00022 1.8E-08 44.5 15.9 133 4-139 1-150 (159)
7 PF08327 AHSA1: Activator of H 97.9 0.00032 2.7E-08 43.5 13.7 120 11-145 1-123 (123)
8 PF08982 DUF1857: Domain of un 95.7 0.057 4.8E-06 29.2 12.7 100 3-118 1-108 (148)
9 PF11687 DUF3284: Domain of un 92.4 0.28 2.3E-05 24.9 11.9 109 6-128 3-113 (120)
10 PF11485 DUF3211: Protein of u 66.7 3.1 0.00026 18.3 12.4 119 4-140 3-123 (136)
11 PF09366 DUF1997: Protein of u 48.9 6.1 0.00052 16.4 14.8 135 3-144 4-159 (173)
12 PF02713 DUF220: Domain of unk 27.3 7.5 0.00063 15.8 0.8 19 84-102 26-44 (74)
13 PF02974 Inh: Protease inhibit 25.5 15 0.0012 14.0 3.1 21 91-113 12-32 (99)
14 PF02777 Sod_Fe_C: Iron/mangan 21.6 17 0.0015 13.5 2.1 17 19-35 10-26 (106)
15 PF07240 Turandot: Stress-indu 20.7 18 0.0015 13.4 3.6 29 118-146 99-127 (127)
No 1
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 2kcz_A 3ggn_B 2res_A 2rez_A 2rer_A 2kf2_A 2d4r_B 1t17_A.
Probab=99.89 E-value=3.4e-22 Score=157.29 Aligned_cols=127 Identities=30% Similarity=0.576 Sum_probs=118.1
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCCCCH
Q ss_conf 65998999999860763255404410579984015898418999973036741104566678725761899987263100
Q T0583 10 ARHRAEQMFALVADVEKYPQFLPMCEALSIRSRKERDGKTLLIADMTVGYKLIRETFTSQVLLKPDENIIDVKYIDGPFR 89 (152)
Q Consensus 10 i~ap~e~V~~vi~D~e~y~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~g~f~ 89 (152)
|+||+++||++++|+++||+|+|+|+++++|++.++ .+...+.+.+.++...|.+++++.++.. +.+.+.+|+|+
T Consensus 1 V~ap~~~v~~~i~D~e~~~~f~p~~~~v~vl~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~-i~~~~~~g~f~ 75 (130)
T PF03364_consen 1 VPAPPEEVWDVITDYENYPEFVPWVKEVRVLERDGN----RTRARWRVGFGGFRETWTSRVTEQPPNE-ISFEQISGPFK 75 (130)
T ss_dssp ESS-HHHHHHHHHTGGGHCCCSTTEEEEEEEECCCC----EEEEEEEECSTSSEEEEEEEEEEETTTT-EEEECEE--EC
T ss_pred CCCCHHHHHHHHHCHHHHHHHCCCCCEEEEEEECCC----EEEEEEEEEECCEEEEEEEEEEEECCCE-EEEEECCCCCC
T ss_conf 989989999999888888976737868999998899----7999999970678999999999987863-87896378851
Q ss_pred HHEEEEEEEECCC---CCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0001357752568---971799999986247624899999999999999999999
Q T0583 90 YLDNRWTFRPTDG---GAQCDVEFFIDYEFKSRTLGLLMGTMFDLAFKKFSEAFE 141 (152)
Q Consensus 90 ~~~g~w~~~p~~~---~~~t~v~~~v~~e~~~~l~~~~~~~~~~~~~~~~~~af~ 141 (152)
.+.|+|+|+|..+ ++.|+|++++++++++++++.+++.+++...+++++||+
T Consensus 76 ~~~g~W~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~ 130 (130)
T PF03364_consen 76 SFEGSWRFEPLGGNDGGTRTRVTFEVEVEPKSPLPGFLARPFFRRLLREMLRAFR 130 (130)
T ss_dssp EEEEEEEEEE---EE---EEEEEEEEEE-TT-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6699999999998777998999999999138777999999999999999998209
No 2
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; PDB: 3f08_B 3cnw_A.
Probab=99.67 E-value=6.5e-16 Score=117.49 Aligned_cols=136 Identities=15% Similarity=0.262 Sum_probs=99.4
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEECC-CEEE
Q ss_conf 980889998659989999998607632554044105799840158984189999730367411045666787257-6189
Q T0583 1 MPQFTTARRARHRAEQMFALVADVEKYPQFLPMCEALSIRSRKERDGKTLLIADMTVGYKLIRETFTSQVLLKPD-ENII 79 (152)
Q Consensus 1 M~~i~~~~~i~ap~e~V~~vi~D~e~y~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~i 79 (152)
|.++++++.|+|||++||++++|+++|++|+|++.++++++..+. .....+. ..+. .+...+++...+ +..+
T Consensus 1 M~~v~~s~~i~a~~e~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~----~~~~~~~--~~g~-~~~~~~v~~~~~~~~~~ 73 (139)
T PF10604_consen 1 MARVESSIEIPAPPEQVWDFLSDPDNWPRWMPGVRRVEWIDPGGP----GVGRTVR--FGGR-GEVREEVTEWDPDPRRV 73 (139)
T ss_dssp -B---EEEEE---HHHHHHH------HHHC-TT-SEEEEE---------E--EEEE--------EEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEECCCHHHHHHHHHCCCCHHHHCCCCEEEEEECCCCC----CEEEEEE--ECCC-CCEEEEEEEEEECCCEE
T ss_conf 979999999869999999988484568782978539999417997----2668997--4355-73289999997289899
Q ss_pred EEEECCCCCHHHEEEEEEEECCCCCEEEEEEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9987263100000135775256897179999998624--76248999999999999999999999999
Q T0583 80 DVKYIDGPFRYLDNRWTFRPTDGGAQCDVEFFIDYEF--KSRTLGLLMGTMFDLAFKKFSEAFEKRAD 145 (152)
Q Consensus 80 ~~~~~~g~f~~~~g~w~~~p~~~~~~t~v~~~v~~e~--~~~l~~~~~~~~~~~~~~~~~~af~~Ra~ 145 (152)
.+....+++..+.+.|+|+|.++ +|+|+++++|++ .+++.+.++..+++...++.++.+++++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--gT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~E 139 (139)
T PF10604_consen 74 SYRVVPGPFFRYEGTWTLEPTGD--GTRVTWTFEFEPPLPGWLMGPLARRAVKRFLERGLERLKARLE 139 (139)
T ss_dssp EEEEESSSEES-EEEEEEE------TEEEEEE--BEE---SSS-HHHHHHHH--------HHHHHH--
T ss_pred EEEEEECCCCEEEEEEEEEECCC--CEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999169728999999999899--9999999999995240223799999999999999997755109
No 3
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source .; PDB: 2pcs_A 2ns9_B.
Probab=99.17 E-value=3e-10 Score=81.62 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=95.6
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEE--CCCEE--EEEE
Q ss_conf 9986599899999986076325540441057998401589841899997303674110456667872--57618--9998
Q T0583 7 ARRARHRAEQMFALVADVEKYPQFLPMCEALSIRSRKERDGKTLLIADMTVGYKLIRETFTSQVLLK--PDENI--IDVK 82 (152)
Q Consensus 7 ~~~i~ap~e~V~~vi~D~e~y~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~--i~~~ 82 (152)
+..|++|+|+||++++|++++..-+|+|++.+.+. . ...+.+++.++.++.+|..++... .++.. +...
T Consensus 2 ~~~v~a~~e~vw~~l~D~~~l~~CiPG~~~~e~~~-~------~~~~~~~v~vG~i~~~~~g~v~~~~~~~~~~~~i~~~ 74 (140)
T PF06240_consen 2 SFTVPAPPEKVWQFLSDPENLASCIPGCESIEVVG-D------EYKGTVKVKVGPIKARFKGEVELSEIDPPNSYTIEGT 74 (140)
T ss_dssp -EEESS-HHHHHHHHT-HHHHHHH-----EEEE----------EEEEEE----GGG---EEEEEEEEEEETTTEEEEEEE
T ss_pred CEEECCCHHHHHHHHCCHHHHHHHCCCCEEEEECC-C------EEEEEEEEEEECEEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf 58805999999998629999985689938824249-7------8999999987058999999999997189968999999
Q ss_pred ECCCC-CHHHEEEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72631-00000135775256897179999998624762489999999999999999999999997
Q T0583 83 YIDGP-FRYLDNRWTFRPTDGGAQCDVEFFIDYEFKSRTLGLLMGTMFDLAFKKFSEAFEKRADQ 146 (152)
Q Consensus 83 ~~~g~-f~~~~g~w~~~p~~~~~~t~v~~~v~~e~~~~l~~~~~~~~~~~~~~~~~~af~~Ra~~ 146 (152)
..+.. --...+.-++.+.++++ |+|+|+.+++..+++ ..+.+++++.++++|+++|.++-.+
T Consensus 75 G~g~~~~~~~~~~~~~~~~~~~~-T~v~~~~d~~~~G~l-a~~g~~~i~~~a~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 75 GKGRGGGGSASAAITILLEPDGG-TRVTYSADANVGGKL-AQLGRRLIDSVARKLIEQFFECLAA 137 (140)
T ss_dssp --------EEE-EEEEEECSSS--EEEEEEEEEE----C-CC----HHHHHHHHHHHHHHHHHCC
T ss_pred EECCCCCEEEEEEEEEECCCCCC-EEEEEEEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97376522347999997278996-099999999977188-9864778999999999999999986
No 4
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins . StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation . Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain , . The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule . The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases , . ; PDB: 1em2_A 1jss_A 2r55_B 2e3n_A 2z9z_A 2e3o_A 2e3q_A 2e3r_B 2e3p_B 2e3s_A ....
Probab=98.44 E-value=4.3e-05 Score=48.96 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=89.8
Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECC--CCCCEEEEEEEE-EE-CCCEE
Q ss_conf 088999865998999999860763255404410579984015898418999973036--741104566678-72-57618
Q T0583 3 QFTTARRARHRAEQMFALVADVEKYPQFLPMCEALSIRSRKERDGKTLLIADMTVGY--KLIRETFTSQVL-LK-PDENI 78 (152)
Q Consensus 3 ~i~~~~~i~ap~e~V~~vi~D~e~y~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~-~~-~~~~~ 78 (152)
.+.....|++++++++..+.|-.. +|.+.|.++++|+..+++.. .......... ..-...++.... .. .++..
T Consensus 47 ~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~-i~~~~~~~~~~~p~~~RDfV~~r~~~~~~~~~~ 123 (206)
T PF01852_consen 47 MFKAEGIVPAPPEQVVEDLLDDNE--KWDKNVIEAEVLEKIDDDTD-IVYYVTKFPWPSPVSPRDFVFVRRWRKDEDGTY 123 (206)
T ss_dssp EEEEEEEESSCHHHHHHHHHHGGH--HH-TTEEEEEEEEEEETTEE-EEEEEEE-STTTTSS-EEEEEEEEEEETSSSEE
T ss_pred EEEEEEEECCCHHHHHHHHHHHHH--HHHHHHHHEEEEEEECCCCE-EEEEEEECCCCCCCCCCEEEEEEEEEECCCCEE
T ss_conf 699999985777999999985044--35676321269999389979-999995235678889987999999999289619
Q ss_pred -EEEEECC---CC------CH--HHEEEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -9998726---31------00--000135775256897179999998624762489999999999999999999999997
Q T0583 79 -IDVKYID---GP------FR--YLDNRWTFRPTDGGAQCDVEFFIDYEFKSRTLGLLMGTMFDLAFKKFSEAFEKRADQ 146 (152)
Q Consensus 79 -i~~~~~~---g~------f~--~~~g~w~~~p~~~~~~t~v~~~v~~e~~~~l~~~~~~~~~~~~~~~~~~af~~Ra~~ 146 (152)
+...+.+ .| .| .+.+.|.|+|.++ +.|.+++.+..+|++.+++.+++.++....-++++.+.+.+++
T Consensus 124 ~i~~~Sv~~~~~p~~~~~~VR~~~~~~~~~i~~~~~-~~t~v~~~~~~D~~G~iP~~l~n~~~~~~~~~~~~~l~~~~~~ 202 (206)
T PF01852_consen 124 VIVSRSVDHPSYPPNSKGYVRAEMLISGWIIRPVPN-GKTKVTYVSQVDPKGWIPQWLVNSVAKKQMPDFLKKLRKALKK 202 (206)
T ss_dssp EEEEEEEEBTTS-T--TTSBEEEEEEEEEEEEEETT-ECEEEEEEEEEE-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999860247756766788303447426999999699-9889999997888999779999999987089999999999998
No 5
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis has confirmed earlier predictions of the protein structure and site of the major T-cell epitope . The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P.sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1fm4_A 2bk0_A 2vjg_A 1vjh_B 2q3q_B 2i9y_A 2flh_D 3c0v_C 2vne_A 2vq5_B ....
Probab=98.31 E-value=5.6e-05 Score=48.25 Aligned_cols=116 Identities=15% Similarity=0.247 Sum_probs=81.3
Q ss_pred EEEEEEEECCCHHHHHHHHH-HHHHHHHHCCC-CCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEE-CCCEEE
Q ss_conf 08899986599899999986-07632554044-1057998401589841899997303674110456667872-576189
Q T0583 3 QFTTARRARHRAEQMFALVA-DVEKYPQFLPM-CEALSIRSRKERDGKTLLIADMTVGYKLIRETFTSQVLLK-PDENII 79 (152)
Q Consensus 3 ~i~~~~~i~ap~e~V~~vi~-D~e~y~~f~p~-~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~i 79 (152)
+++..+.+.+||+.+|.+.. ....+|+.+|. ++++++++.++..+|+...+ ...-++-...+..++... ..+..+
T Consensus 5 ~~~~E~~~~~~a~k~~k~~~~~~~l~pk~~P~~i~sie~~eGdgg~gGSIk~~--~f~~~~~~~~~Kerie~~D~~~~~~ 82 (151)
T PF00407_consen 5 KLEVEIEVKVSADKLFKAFKSSDHLLPKVLPHVIKSIELHEGDGGPGGSIKKW--TFGEGGPFKYVKERIEAVDEENKTI 82 (151)
T ss_dssp EEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEE--------EEEE--EEETTSSEEEEEEEEEEEETTTTEE
T ss_pred EEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEE--EEECCCCCCEEEEEEEEECCCCEEE
T ss_conf 99999980579999999985576432201822011699984789999759999--9986866518999999845870399
Q ss_pred EEEECCCC----CHHHEEEEEEEECCCCCEEEEEEEEEEECCCHHH
Q ss_conf 99872631----0000013577525689717999999862476248
Q T0583 80 DVKYIDGP----FRYLDNRWTFRPTDGGAQCDVEFFIDYEFKSRTL 121 (152)
Q Consensus 80 ~~~~~~g~----f~~~~g~w~~~p~~~~~~t~v~~~v~~e~~~~l~ 121 (152)
.+...+|. ++.+...-.+.|.++ ++|.++++++|+..+...
T Consensus 83 ~y~viEGd~l~~~~~~~~~~~~~~~~~-gg~i~k~t~~Ye~~~~~~ 127 (151)
T PF00407_consen 83 TYTVIEGDVLKDYKSFKVTEQKIPKGD-GGCIAKWTIEYEKKGEAV 127 (151)
T ss_dssp EEEEEE-ECTCTTEEEEEEEEEEEEET-TEEEEEEEEEEEESSCCC
T ss_pred EEEEEECCCCCCEEEEEEEEEECCCCC-CCEEEEEEEEEEECCCCC
T ss_conf 999996665658489999999857899-966999999998479998
No 6
>PF10698 DUF2505: Protein of unknown function (DUF2505)
Probab=98.09 E-value=0.00022 Score=44.53 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=80.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCE--EEEEEECCCCCCEEEEEEEEECC----------CCCCEEEEEEEE
Q ss_conf 889998659989999998607632554044105--79984015898418999973036----------741104566678
Q T0583 4 FTTARRARHRAEQMFALVADVEKYPQFLPMCEA--LSIRSRKERDGKTLLIADMTVGY----------KLIRETFTSQVL 71 (152)
Q Consensus 4 i~~~~~i~ap~e~V~~vi~D~e~y~~f~p~~~~--~~vl~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~ 71 (152)
|+.+..+++|+++||+.++|-+=|..-+..+.. .++.+-..++.+..+.....+.. .+-...+.-..+
T Consensus 1 f~~~~~~~~~~~~V~~~~~de~y~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~p~~~lP~~~~k~v~~~l~i~~~et 80 (159)
T PF10698_consen 1 FEVSVEYPAPVDRVHAAFTDEDYWRARLERLGADEAEVESFEVDGDGFRVTLRQVLPADDLPGAARKFVGGDLRIKRTET 80 (159)
T ss_pred CCEEEECCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCHHCHHHHHHHCCCCCEEEEEEE
T ss_conf 91788848999999999769999999999709986359999863993599999933700080999974777737999999
Q ss_pred EEC--CCEE---EEEEECCCCCHHHEEEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 725--7618---9998726310000013577525689717999999862476248999999999999999999
Q T0583 72 LKP--DENI---IDVKYIDGPFRYLDNRWTFRPTDGGAQCDVEFFIDYEFKSRTLGLLMGTMFDLAFKKFSEA 139 (152)
Q Consensus 72 ~~~--~~~~---i~~~~~~g~f~~~~g~w~~~p~~~~~~t~v~~~v~~e~~~~l~~~~~~~~~~~~~~~~~~a 139 (152)
+.+ +... +.....+.| -.+.|+-++.+ ++++|+++++.+.+.+.|++|..+.+++...+.+.+++
T Consensus 81 w~~~~~~~~~~~~~~~i~g~P-~~~~Gt~~L~~--~~~~t~~~~~gev~v~IPlvG~kiE~~v~~~l~~~~~~ 150 (159)
T PF10698_consen 81 WGPLDDGSATGTFTVSIPGAP-VSISGTMRLSP--DGEGTRLRVEGEVKVKIPLVGGKIEKAVADNLQDLLRA 150 (159)
T ss_pred EECCCCCEEEEEEEEEECCCE-EEEEEEEEEEC--CCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 912899869999998843756-99999999975--99967999999999996065189999999999999998
No 7
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity . It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress . p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport . It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; PDB: 2il5_A 3eli_A 1x53_A 2gkc_A 1zxf_A 2gkd_A 1z94_C 1xuv_C 1xfs_A 2k5g_A ....
Probab=97.89 E-value=0.00032 Score=43.45 Aligned_cols=120 Identities=8% Similarity=-0.024 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEECCC---C
Q ss_conf 5998999999860763255404410579984015898418999973036741104566678725761899987263---1
Q T0583 11 RHRAEQMFALVADVEKYPQFLPMCEALSIRSRKERDGKTLLIADMTVGYKLIRETFTSQVLLKPDENIIDVKYIDG---P 87 (152)
Q Consensus 11 ~ap~e~V~~vi~D~e~y~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~g---~ 87 (152)
+||+++||+.++|-+.+.+|.+ +....+ + ...|+ .... . ..+........++...|+++|.+..... +
T Consensus 1 ~ap~e~Vw~a~t~~e~l~~W~~-~~~~~~-~-~~~Gg--~~~~--~--~~g~~~~~~~~~~~~~p~~~i~~~~~~~~~~~ 71 (123)
T PF08327_consen 1 DAPPERVWAALTDPEGLAQWFT-TSEAEM-D-FRVGG--RFRF--D--PDGKEFGWDGTILEIEPPQRIVFTWRMEDWED 71 (123)
T ss_dssp SS-HHHHHHHTCSHHHHTTCTE-EEEEEE-T-S-S----EEEE--E--CCCSEEEEEEEEEEEETTTEEEEEESECCCTC
T ss_pred CCCHHHHHHHHCCHHHHCEECC-CCCCCC-C-CCCCC--EEEE--E--ECCCCCCCEEEEEEECCCCEEEEEEECCCCCC
T ss_conf 9498999999759378802978-761033-2-10298--8999--6--36960001799999628979999997378887
Q ss_pred CHHHEEEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000013577525689717999999862476248999999999999999999999999
Q T0583 88 FRYLDNRWTFRPTDGGAQCDVEFFIDYEFKSRTLGLLMGTMFDLAFKKFSEAFEKRAD 145 (152)
Q Consensus 88 f~~~~g~w~~~p~~~~~~t~v~~~v~~e~~~~l~~~~~~~~~~~~~~~~~~af~~Ra~ 145 (152)
......+|.|.+. + ++|++++..+.-. ........+...-..++..+++.+|
T Consensus 72 ~~~~~v~~~~~~~-~-~~T~l~~~~~~~~----~~~~~~~~~~~Gw~~~l~~L~~~lE 123 (123)
T PF08327_consen 72 GSESLVTFEFEEE-G-GGTRLTLTHSGFP----EDDEEEMGCEQGWEQALDRLKAYLE 123 (123)
T ss_dssp SS-EEEEEEEEEE-T-TEEEEEEEEEHHH----HHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCEEEEEEEEEC-C-CCEEEEEEEECCC----CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8757999999984-9-9789999997677----5268999999989999999999869
No 8
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2ffs_A.
Probab=95.66 E-value=0.057 Score=29.22 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=59.5
Q ss_pred EEEEEEEECCCH-------HHHHH-HHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEEC
Q ss_conf 088999865998-------99999-9860763255404410579984015898418999973036741104566678725
Q T0583 3 QFTTARRARHRA-------EQMFA-LVADVEKYPQFLPMCEALSIRSRKERDGKTLLIADMTVGYKLIRETFTSQVLLKP 74 (152)
Q Consensus 3 ~i~~~~~i~ap~-------e~V~~-vi~D~e~y~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 74 (152)
.+++++.|+-|. +|+|. ++...++--.|+|++.+++|+++.+ ..+.-++..+.. .+...+++.+
T Consensus 1 n~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~~~~----~~l~Rel~fg~~----~v~e~v~~~~ 72 (148)
T PF08982_consen 1 NFEHTVPINPPGDSPVLTREQLWRGLVLKARQPQLFVPGIDSCEVLSESG----TVLTRELHFGGA----KVRERVTLYP 72 (148)
T ss_dssp EEEEEEE-----------HHHHH---HHHHH-GGGT-----EEEEEEE-------EEEEEEE--------EEEEEEEEET
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCEEEEEECCC----CEEEEEEEECCC----EEEEEEEECC
T ss_conf 94478734898888967999999888871368444746345589995589----859999999896----5799999528
Q ss_pred CCEEEEEEECCCCCHHHEEEEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf 76189998726310000013577525689717999999862476
Q T0583 75 DENIIDVKYIDGPFRYLDNRWTFRPTDGGAQCDVEFFIDYEFKS 118 (152)
Q Consensus 75 ~~~~i~~~~~~g~f~~~~g~w~~~p~~~~~~t~v~~~v~~e~~~ 118 (152)
+.. +.+....|..- .-.++. +..+. +-++..|+.+.
T Consensus 73 ~~~-v~f~~~~G~~l----t~~Ise-~~~g~--L~ltf~ye~~~ 108 (148)
T PF08982_consen 73 PQR-VDFAQADGSSL----TNTISE-PEPGE--LFLTFIYEWRL 108 (148)
T ss_dssp TTE-EEESS-B---E----EEEEE--S-------EEEEEEE---
T ss_pred CCE-EEEECCCCCEE----EEEECC-CCCCC--EEEEEEEEECC
T ss_conf 837-99864889779----999801-89985--89999998235
No 9
>PF11687 DUF3284: Domain of unknown function (DUF3284)
Probab=92.40 E-value=0.28 Score=24.89 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=64.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHH--HHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 9998659989999998607632--55404410579984015898418999973036741104566678725761899987
Q T0583 6 TARRARHRAEQMFALVADVEKY--PQFLPMCEALSIRSRKERDGKTLLIADMTVGYKLIRETFTSQVLLKPDENIIDVKY 83 (152)
Q Consensus 6 ~~~~i~ap~e~V~~vi~D~e~y--~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~ 83 (152)
.+..+++|++++|+.+.+--.+ .+..- +...+ ... .++.+.-..+.+. ....+++...++...++..
T Consensus 3 I~~~l~vsa~~fF~~i~~s~~~Di~~~tg--k~~~~-----~~L-~G~~Y~K~~~~~~---~~~vkIt~~~~~~~Y~~~~ 71 (120)
T PF11687_consen 3 ITKTLNVSAKEFFDYIIRSLLYDIKQATG--KKLPV-----KEL-AGFTYQKKISNGK---KAKVKITEYEPNKKYAATF 71 (120)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHCC--CCCCH-----HHC-CCEEEEEECCCCC---EEEEEEEEECCCCEEEEEE
T ss_conf 89996779999999999999999999719--97872-----224-7828999738885---5899999961895799999
Q ss_pred CCCCCHHHEEEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHH
Q ss_conf 263100000135775256897179999998624762489999999
Q T0583 84 IDGPFRYLDNRWTFRPTDGGAQCDVEFFIDYEFKSRTLGLLMGTM 128 (152)
Q Consensus 84 ~~g~f~~~~g~w~~~p~~~~~~t~v~~~v~~e~~~~l~~~~~~~~ 128 (152)
.+. ...+..+|.+.|.+++ .|+|+|+=+++..+.+ +.+-+.+
T Consensus 72 ~s~-~~~~~v~Y~l~~~~~~-~~~vty~E~~~~~~~~-~k~n~~l 113 (120)
T PF11687_consen 72 SSD-RGTFTVRYELKPLGEG-KTEVTYSEDQETKNFF-QKLNNKL 113 (120)
T ss_pred EEC-CCCEEEEEEEEECCCC-CEEEEEEEEEECCCHH-HHHHHHH
T ss_conf 806-9968999999887999-5899999987045889-9999999
No 10
>PF11485 DUF3211: Protein of unknown function (DUF3211); PDB: 2ejx_A.
Probab=66.75 E-value=3.1 Score=18.27 Aligned_cols=119 Identities=16% Similarity=0.302 Sum_probs=63.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHH-HHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 88999865998999999860763-25540441057998401589841899997303674110456667872576189998
Q T0583 4 FTTARRARHRAEQMFALVADVEK-YPQFLPMCEALSIRSRKERDGKTLLIADMTVGYKLIRETFTSQVLLKPDENIIDVK 82 (152)
Q Consensus 4 i~~~~~i~ap~e~V~~vi~D~e~-y~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~ 82 (152)
++.++.-+..+|.|..+++|.+- +|.++|..++..+ .++ - . +....++.+......++.--.+.-...+.
T Consensus 3 ~~i~i~T~hd~e~v~~IlSDP~F~lp~l~p~ik~l~~---~~n--s--F--~~~g~f~~~~~~~~g~v~vg~~~VtY~~~ 73 (136)
T PF11485_consen 3 IEITIKTSHDIEVVLKILSDPEFFLPKLFPFIKSLKV---EEN--S--F--RAEGKFGRFPFEIKGRVYVGNNEVTYVFY 73 (136)
T ss_dssp EEEEEE-SS-HHHHHHHHT-HHHHHHHH-----EEE----STT--------EEE--BTTB---EE-EEE----EEEEEEE
T ss_pred EEEEECCCCCHHHEEEEECCCCEEECCCCCCEEEEEC---CCC--E--E--EEEEEEEEEEEEEEEEEEECCCCEEEEEE
T ss_conf 8999616898588076513955080013771479971---796--8--9--99998746889999999975673899999
Q ss_pred ECCC-CCHHHEEEEEEEECCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7263-100000135775256897179999998624762489999999999999999999
Q T0583 83 YIDG-PFRYLDNRWTFRPTDGGAQCDVEFFIDYEFKSRTLGLLMGTMFDLAFKKFSEAF 140 (152)
Q Consensus 83 ~~~g-~f~~~~g~w~~~p~~~~~~t~v~~~v~~e~~~~l~~~~~~~~~~~~~~~~~~af 140 (152)
...| +.. .|.-+|... + +. |...++|+- .+ ..+.+.+++.-+++..+.+
T Consensus 74 ~~~g~~~g--~Gkl~i~~~-~-~~--i~i~~eyeg--~~-e~~~~~~i~~~i~~~~~~l 123 (136)
T PF11485_consen 74 FSPGPPNG--NGKLTIQLR-N-GE--INIIFEYEG--WM-ESLIGFSISRWISKFARKL 123 (136)
T ss_dssp ----E--------EEEEEE-T-TE--EEEEE--S---HH-HHH--HHHHHHHHHHHHHH
T ss_pred EECCCCCC--CEEEEEEEC-C-CE--EEEEEEECC--EE-EEEEHHHHHHHHHHHHHHH
T ss_conf 60258998--269999815-9-98--999998411--66-4336788998999988767
No 11
>PF09366 DUF1997: Protein of unknown function (DUF1997)
Probab=48.93 E-value=6.1 Score=16.36 Aligned_cols=135 Identities=10% Similarity=0.033 Sum_probs=65.8
Q ss_pred EEEEEEEECCCHH-HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEE--EEEEEEEECCCEE-
Q ss_conf 0889998659989-99999860763255404410579984015898418999973036741104--5666787257618-
Q T0583 3 QFTTARRARHRAE-QMFALVADVEKYPQFLPMCEALSIRSRKERDGKTLLIADMTVGYKLIRET--FTSQVLLKPDENI- 78 (152)
Q Consensus 3 ~i~~~~~i~ap~e-~V~~vi~D~e~y~~f~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~- 78 (152)
+.+..+.+..+++ .+=+++.+.+++-.-+..-..++-|+. + ....... ..++.++... ...++......-.
T Consensus 4 ~~~~~~~~~~~~~~~l~~YL~~~~r~~~~~~d~~~~e~l~~--~--~yrl~~~-~~~~~~~~v~P~v~lrv~~~~~g~~i 78 (173)
T PF09366_consen 4 SQSLDMPVYEPPEAPLAEYLSDPQRWFSALFDPMRVEPLGD--N--TYRLTLG-PFGFFGFEVEPVVDLRVWPEDGGLRI 78 (173)
T ss_pred EEEEEEEECCCCCCCHHHHHHCCHHHHHHHCCHHHCEECCC--C--EEEEEEE-CCCEEEEEEEEEEEEEEEECCCCEEE
T ss_conf 48788871478877789998482769888359989589689--8--5999996-55245789999999999986997699
Q ss_pred ----EEEEECCCC-----C-HHHEEEEEEEECCCCCEEEEEE----EEEEECCCHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----999872631-----0-0000135775256897179999----9986247624---899999999999999999999
Q T0583 79 ----IDVKYIDGP-----F-RYLDNRWTFRPTDGGAQCDVEF----FIDYEFKSRT---LGLLMGTMFDLAFKKFSEAFE 141 (152)
Q Consensus 79 ----i~~~~~~g~-----f-~~~~g~w~~~p~~~~~~t~v~~----~v~~e~~~~l---~~~~~~~~~~~~~~~~~~af~ 141 (152)
......+-+ | -.+.|. +.+.+..+.|.|.. .+.++++.++ +..++....+.+..++++..+
T Consensus 79 ~~~~~~l~G~~~~~~~~~f~l~~~a~--L~~~~~~~~t~v~~~~~l~V~v~lP~~l~llP~~~l~~~G~~~L~~il~~i~ 156 (173)
T PF09366_consen 79 RSLDCELEGLPLVEQNDDFSLDFQAS--LYPDEPEGQTRVEGDLDLSVSVELPPPLRLLPESLLESTGNSLLQQILRQIS 156 (173)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEEEE--EEEECCCCCCEEEEEEEEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 87589992898666687679999999--9971379960799999999999978818869599999999999999999999
Q ss_pred HHH
Q ss_conf 999
Q T0583 142 KRA 144 (152)
Q Consensus 142 ~Ra 144 (152)
.|.
T Consensus 157 ~rl 159 (173)
T PF09366_consen 157 QRL 159 (173)
T ss_pred HHH
T ss_conf 999
No 12
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=27.26 E-value=7.5 Score=15.82 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=14.8
Q ss_pred CCCCCHHHEEEEEEEECCC
Q ss_conf 2631000001357752568
Q T0583 84 IDGPFRYLDNRWTFRPTDG 102 (152)
Q Consensus 84 ~~g~f~~~~g~w~~~p~~~ 102 (152)
..+.++.++|+|.++|+--
T Consensus 26 k~~FMK~FeG~wkVEPlyV 44 (74)
T PF02713_consen 26 KMMFMKVFEGSWKVEPLYV 44 (74)
T ss_pred HEEEEEEECCEEEEEEEEE
T ss_conf 1354666444266677786
No 13
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR003086 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 15 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 610 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2 recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity , . Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily . The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions . ; GO: 0004866 endopeptidase inhibitor activity, 0030288 outer membrane-bounded periplasmic space; PDB: 1smp_I 2rn4_A 1jiw_I.
Probab=25.46 E-value=15 Score=13.97 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=7.6
Q ss_pred HEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 00135775256897179999998
Q T0583 91 LDNRWTFRPTDGGAQCDVEFFID 113 (152)
Q Consensus 91 ~~g~w~~~p~~~~~~t~v~~~v~ 113 (152)
+.|.|++. +++..|+|++..+
T Consensus 12 l~G~W~l~--~~~~~C~v~L~~~ 32 (99)
T PF02974_consen 12 LAGQWQLS--DGGKTCRVTLTST 32 (99)
T ss_dssp C---EEEE--TSS-EEEEEEEEE
T ss_pred CCEEEEEE--CCCCCCEEEECCC
T ss_conf 01653883--4998527893367
No 14
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR001189 Superoxide dismutases (SODs) () catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one , , . This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist . The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) . ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process; PDB: 1unf_X 1my6_A 1uer_D 1ues_D 1qnn_B 3esf_D 2gpc_B 2cw2_B 2awp_A 2a03_A ....
Probab=21.59 E-value=17 Score=13.50 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99860763255404410
Q T0583 19 ALVADVEKYPQFLPMCE 35 (152)
Q Consensus 19 ~vi~D~e~y~~f~p~~~ 35 (152)
++-.+|.++.+|..-..
T Consensus 10 ~I~~~FGS~d~fk~~f~ 26 (106)
T PF02777_consen 10 AIEKDFGSFDNFKEQFK 26 (106)
T ss_dssp HHHHHHSSHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHH
T ss_conf 99988389999999999
No 15
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 .
Probab=20.72 E-value=18 Score=13.38 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 62489999999999999999999999997
Q T0583 118 SRTLGLLMGTMFDLAFKKFSEAFEKRADQ 146 (152)
Q Consensus 118 ~~l~~~~~~~~~~~~~~~~~~af~~Ra~~ 146 (152)
++..+.+++.++.+++......|+++|++
T Consensus 99 GG~~~~i~~~~i~~~a~~v~~~~~~~a~e 127 (127)
T PF07240_consen 99 GGWWGKIVKKIISPAAKSVADGFFKRARE 127 (127)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 77148799999999999988999986319
Done!