Query T0584 3NF2, Streptomyces coelicolor, 352 residues Match_columns 352 No_of_seqs 184 out of 2359 Neff 7.1 Searched_HMMs 22458 Date Sun Jun 13 15:27:08 2010 Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0584.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0584.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3lmd_A Geranylgeranyl pyrophos 100.0 0 0 523.8 32.5 321 5-349 36-357 (360) 2 3lk5_A Geranylgeranyl pyrophos 100.0 0 0 516.0 35.7 335 9-348 18-377 (380) 3 1wy0_A Geranylgeranyl pyrophos 100.0 0 0 512.2 32.3 330 4-344 6-342 (342) 4 2q80_A Geranylgeranyl pyrophos 100.0 0 0 481.5 26.5 287 42-343 13-300 (301) 5 2qis_A Farnesyl pyrophosphate 100.0 0 0 467.0 36.6 297 36-343 60-373 (374) 6 1uby_A FPS, farnesyl diphospha 100.0 0 0 468.3 32.2 294 39-343 56-366 (367) 7 2e8v_A Geranylgeranyl pyrophos 100.0 0 0 472.5 27.1 297 41-345 27-339 (340) 8 1wmw_A Geranylgeranyl diphosph 100.0 0 0 468.1 30.7 313 12-343 8-329 (330) 9 2ihi_A Pyrophosphate synthase; 100.0 0 0 463.5 30.5 322 5-342 36-394 (395) 10 1yhl_A Farnesyl pyrophosphate 100.0 0 0 456.5 35.3 293 41-343 35-361 (362) 11 3dyh_A Farnesyl pyrophosphate 100.0 0 0 456.5 33.2 325 5-343 25-389 (390) 12 1rqj_A Geranyltranstransferase 100.0 0 0 445.2 29.3 288 3-343 1-298 (299) 13 3ipi_A Geranyltranstransferase 100.0 0 0 444.2 24.3 282 1-343 1-283 (295) 14 2h8o_A Geranyltranstransferase 100.0 0 0 433.8 30.3 290 4-344 38-335 (335) 15 3lsn_A Geranyltranstransferase 100.0 0 0 433.9 28.0 292 3-349 1-301 (304) 16 1v4e_A Octoprenyl-diphosphate 100.0 0 0 435.3 25.4 256 44-323 30-286 (299) 17 3lom_A Geranyltranstransferase 100.0 0 0 428.0 26.2 293 1-348 1-307 (313) 18 2her_A Fragment, farnesyl pyro 100.0 0 0 435.5 19.6 318 6-347 29-363 (368) 19 3m9u_A Farnesyl-diphosphate sy 100.0 0 0 423.5 28.2 287 5-346 8-303 (309) 20 1rtr_A Geranyltranstransferase 100.0 0 0 421.8 25.1 262 42-349 30-298 (301) 21 2ftz_A Geranyltranstransferase 100.0 0 0 410.5 27.2 266 14-342 16-284 (284) 22 2azj_A Geranylgeranyl pyrophos 100.0 0 0 417.7 19.1 244 2-268 8-256 (289) 23 3m0g_A Farnesyl diphosphate sy 100.0 0 0 397.3 24.6 284 3-348 1-293 (297) 24 2j1p_A Geranylgeranyl pyrophos 100.0 0 0 389.5 26.9 273 1-343 9-292 (293) 25 3kra_B Geranyl diphosphate syn 100.0 0 0 389.6 19.9 243 7-259 3-268 (274) 26 3llw_A Geranyltranstransferase 100.0 0 0 373.5 25.9 246 1-260 1-264 (311) 27 3kb9_A EPI-isozizaene synthase 97.4 0.0052 2.3E-07 34.7 17.2 199 26-230 54-267 (382) 28 2zco_A Dehydrosqualene synthas 96.2 0.048 2.1E-06 29.1 15.4 135 151-326 109-243 (293) 29 1ezf_A Farnesyl-diphosphate fa 95.7 0.078 3.5E-06 27.9 17.9 142 147-325 112-253 (340) 30 1ps1_A Pentalenene synthase; a 95.4 0.1 4.4E-06 27.2 17.8 87 144-230 135-225 (337) 31 3bny_A Aristolochene synthase; 93.5 0.27 1.2E-05 24.7 18.8 61 170-230 165-225 (320) 32 2ong_A 4S-limonene synthase; m 82.1 1.9 8.4E-05 19.8 18.7 86 144-230 356-446 (543) 33 1sz7_A BET3 homolog, trafficki 46.6 11 0.00048 15.4 5.2 55 183-247 23-83 (200) 34 2hh6_A BH3980 protein; 1017660 42.9 6.3 0.00028 16.7 1.1 23 219-241 55-77 (113) 35 1di1_A Aristolochene synthase; 40.7 13 0.00059 14.8 18.7 61 170-230 151-211 (300) 36 2htj_A P fimbrial regulatory p 31.3 11 0.00047 15.4 0.7 25 94-118 41-65 (81) 37 1yyq_A Trichodiene synthase; t 29.5 20 0.0009 13.8 16.0 189 46-268 52-260 (374) 38 2j5c_A 1,8-cineole synthase; t 27.1 22 0.001 13.5 13.5 86 144-230 383-473 (569) 39 2o3l_A Hypothetical protein; N 26.2 17 0.00077 14.2 1.0 21 220-240 40-60 (85) 40 5eau_A 5-EPI-aristolochene syn 23.2 27 0.0012 13.1 15.2 85 144-230 361-450 (548) 41 3c4c_A B-RAF proto-oncogene se 23.2 26 0.0012 13.1 1.5 21 76-96 114-134 (280) 42 2i1m_A Macrophage colony-stimu 21.4 29 0.0013 12.9 1.4 22 76-97 170-191 (333) No 1 >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} Probab=100.00 E-value=0 Score=523.85 Aligned_cols=321 Identities=30% Similarity=0.427 Sum_probs=286.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHH Q ss_conf 78999999999999999998632066889988877777786546651587217899999999973999-78999999999 Q T0584 5 VTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAA-PEVGVPGAVAV 83 (352) Q Consensus 5 ~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~-~~~~~~~Aaav 83 (352) ++..+.+..+.|++.|++.+....|. +.+...|++.+||||+||+||+++++++|++ .+.++++|+++ T Consensus 36 l~~~i~~~l~~ve~~l~~~l~~~~~~-----------~~~~~~~~~~~GGKrlRp~l~l~~~~~~~~~~~~~~~~~Aaai 104 (360) T 3lmd_A 36 LTARINDAMVQVEELLHTELSSGEDF-----------LVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVV 104 (360) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCHH-----------HHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCH-----------HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 89999999999999999985467734-----------9999999881785428899999999984999528899999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999997527877886555578721000464278998999999999999717990079999999999998778877887 Q T0584 84 ELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDI 163 (352) Q Consensus 84 EliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl 163 (352) ||||+||||||||||+|++|||+||+|.+||++.|||+||||++++++++++++. +++..+++++..++.||++|+ T Consensus 105 EliH~asLIhDDI~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~ll~~~~~----~~~~~~~~~~~~~~~Gq~~d~ 180 (360) T 3lmd_A 105 EITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGT----DTVAHFAETFGELVTGQMRET 180 (360) T ss_dssp HHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999986686779998789855440168269999999999999999986694----999999999999999999998 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHH Q ss_conf 64268999989999999865268999999999986399998999999998899999999998875137845616762323 Q T0584 164 SYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSD 243 (352) Q Consensus 164 ~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~D 243 (352) .+..+. .+.++|++|+.+|||+||++||++|++++|++++..+.+.+||+++|+||||+||++|++++++.+|||.|+| T Consensus 181 ~~~~~~-~~~e~y~~ii~~KTa~L~~~~~~~Ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~D 259 (360) T 3lmd_A 181 VGPRDT-DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTD 259 (360) T ss_dssp HCCTTS-CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHH T ss_pred HCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHH T ss_conf 466788-7499999999999999999999999998498999999999999999999988888875028877749972047 Q ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 34056778999998638967899999975310003445689899999999998649089999999999999999986179 Q T0584 244 LRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVD 323 (352) Q Consensus 244 l~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~ 323 (352) |++||+|||++++++..++..+++..++.+. ..++++++++++++.++|++++++++++.|.++|++.|+.+| T Consensus 260 L~eGK~Tlp~i~al~~~~~~~~~l~~~l~~~-------~~~~~~~~~i~~ll~~~g~~~~~~~~a~~~~~~A~~~L~~lp 332 (360) T 3lmd_A 260 LREGVFTLPVLYALREDTPVGAELRDILTGP-------LEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLP 332 (360) T ss_dssp HHHTCCCHHHHHHHHCCSHHHHHHHHHCSSC-------CCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSC T ss_pred HHCCCCCHHHHHHHHHCCHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 7679840999999985987689999998187-------899999999999999869799999999999999999986699 Q ss_pred CCHHHHHHHHHHHHHHHHCCHHCCCC Q ss_conf 99478999999999986112320146 Q T0584 324 MPDRVRDRFTALADFVVVRKREGHHH 349 (352) Q Consensus 324 ~~~~~k~~L~~l~~~~~~R~k~~~~~ 349 (352) +++.|+.|..|++|+++|....... T Consensus 333 -~s~~k~~L~~L~~~~~~R~~~~~~~ 357 (360) T 3lmd_A 333 -DSTVKEALRNLATFTVKRVGEGHHH 357 (360) T ss_dssp -CSHHHHHHHHHHHHHHHTTSTTC-- T ss_pred -CCHHHHHHHHHHHHHHHHCCCCCCC T ss_conf -9689999999999999876765565 No 2 >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum} Probab=100.00 E-value=0 Score=515.99 Aligned_cols=335 Identities=28% Similarity=0.372 Sum_probs=293.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHH Q ss_conf 999999999999999863206688998887777778654665158721789999999997399------97899999999 Q T0584 9 LERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGA------APEVGVPGAVA 82 (352) Q Consensus 9 l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~------~~~~~~~~Aaa 82 (352) |+++...|.+.|.+.++...+.+..+..+... .....++.+.+||||+||+||+++++++|+ +.+.++++|++ T Consensus 18 l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~GGKrlRp~L~l~~~~~~~~~~~~~~~~~~~~~~Aaa 96 (380) T 3lk5_A 18 LDKFPEVVRDRLTQFLDAQELTIADIGAPVTD-AVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAAS 96 (380) T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 99999999999999999877664112721999-99999987548820465999999999827877774128999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEC----------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCC--HHHH Q ss_conf 99999999752787788655557872100----------------04642789989999999999997179900--7999 Q T0584 83 VELVHNFSLLHDDLMDGDEQRRHRDTVWK----------------VHGPAQAILVGDALFALANEVLLELGTVE--AGRA 144 (352) Q Consensus 83 vEliH~asLiHDDi~D~s~~RRG~pt~~~----------------~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~--~~~~ 144 (352) +||||+||||||||||+|++|||+||+|+ .||++.|||+||+|++++++++++.+.+. ..++ T Consensus 97 iEliH~asLiHDDiiD~s~~RRG~pt~h~~~~~~~~~~~~~~~~~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~ 176 (380) T 3lk5_A 97 LEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALART 176 (380) T ss_dssp HHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99999999997030249998798814311544112442013238776788899998799999999998849999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999877887788764268999989999999865268-9999999999863999989999999988999999999 Q T0584 145 TRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGA-LLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAV 223 (352) Q Consensus 145 ~~~~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~-Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~ 223 (352) ...++.+...++.||.+|+.+..+...+++.|+.|+..|||+ +|++||.+|++++|++++..+.+.+||+++|+||||+ T Consensus 177 ~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~y~~i~~~KTa~~l~~~~~~~Ga~lag~~~~~~~~l~~~g~~lG~AFQi~ 256 (380) T 3lk5_A 177 RDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLR 256 (380) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999998600888988504789889999999999999999999999999875999999999999999999998436 Q ss_pred HHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHH Q ss_conf 98875137845616762323340567789999986389678999999753100034456898999999999986490899 Q T0584 224 DDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREW 303 (352) Q Consensus 224 DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~ 303 (352) ||++|++++++.+|||+|+||++||+|||++++++.++...++....+.... ....++++++++++++.++|++++ T Consensus 257 DD~lD~~~d~~~~GK~~g~Dl~~gK~Tlp~i~al~~a~~~~~e~~~~l~~~~----~~~~~~~~i~~v~~~i~~~ga~~~ 332 (380) T 3lk5_A 257 DDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGV----GKVTSPEDIAVITEHIRATGAEEE 332 (380) T ss_dssp HHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHT----TTCCSHHHHHHHHHHHHHTTHHHH T ss_pred HHHHHCCCCHHHHCCCCCHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHCCHHHH T ss_conf 8877423898887897104877698519999999858812699999999734----789999999999999998694999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCC Q ss_conf 999999999999999861799947899999999998611232014 Q T0584 304 TADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVRKREGHH 348 (352) Q Consensus 304 a~~~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~k~~~~ 348 (352) +++++..|.++|+++|+.+|.+++.|+.|..|++++++|...... T Consensus 333 a~~~~~~~~~~A~~~L~~l~~~~~~r~~L~~La~~~~~R~k~~~~ 377 (380) T 3lk5_A 333 VEQRISQLTESGLAHLDDVDIPDEVRAQLRALAIRSTERREGHHH 377 (380) T ss_dssp HHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHC------- T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999999865899859999999999999886786566 No 3 >1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3} Probab=100.00 E-value=0 Score=512.19 Aligned_cols=330 Identities=31% Similarity=0.450 Sum_probs=289.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 57899999999999999999863206688998887777778654665158721789999999997399978999999999 Q T0584 4 DVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAV 83 (352) Q Consensus 4 ~~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~Aaav 83 (352) ++...+.+....|+..|.+.+....|. .+.++.+|.+.+||||+||.||+++++++|++++.++++|+++ T Consensus 6 ~~~~~~~~~~~~v~~~l~~~~~~~~~~----------~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~ai 75 (342) T 1wy0_A 6 ELFARIKEKAKLIDEKIFELIPEKDPR----------VLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAI 75 (342) T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCSSH----------HHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999999999999999863657828----------9999999860168574989999999998098989999999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999975278778865555787210004642789989999999999997179900--799999999999987788778 Q T0584 84 ELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVE--AGRATRRLTKASRSLIDGQAQ 161 (352) Q Consensus 84 EliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Gq~~ 161 (352) ||+|+||||||||+|+|++|||+||+|.+||+..||++||++++.+++.+++...+. ..++...++.+...++.||.+ T Consensus 76 EliH~asLIHDDi~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Gq~~ 155 (342) T 1wy0_A 76 ELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQAR 155 (342) T ss_dssp HHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 99999999818705302265688630233100077641067888999998860476243335676543676455225203 Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHH Q ss_conf 87642689999899999998652689999999999863999989999999988999999999988751378456167623 Q T0584 162 DISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTW 241 (352) Q Consensus 162 dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g 241 (352) |+.+..+...++++|++|+.+|||+||++||++|++++|++++..+.+.+||.++|+||||+||++|++++++.+|||+| T Consensus 156 dl~~~~~~~~~~~~y~~i~~~KTa~lf~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~GK~~g 235 (342) T 1wy0_A 156 DLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVG 235 (342) T ss_dssp HHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSC T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHH T ss_conf 33332156787999999999888999999986140001599999999999999999999998887531488776083334 Q ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHH-HHHHHHHHHCCC----CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 23340567789999986389678999-999753100034----4568989999999999864908999999999999999 Q T0584 242 SDLRQRKKSLPVVAALAAGGAASERL-GEILTADAKASD----FANFSEEEFAARAALIEEAGGREWTADEARRQHTIAI 316 (352) Q Consensus 242 ~Dl~~gK~Tlpii~al~~~~~~~~~~-~~~l~~~~~~~~----~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~ 316 (352) +||++||+|||++++++..++.+++. .+++.+...... ....+.+++.++++++.++|++++|+++++.|.++|+ T Consensus 236 ~Dl~~gk~Tlp~i~al~~~~~~~~~~l~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~ll~~~gaie~~~~~a~~~~~~A~ 315 (342) T 1wy0_A 236 SDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKAN 315 (342) T ss_dssp HHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 56764101589999999711778999999971424206655444420389999999999986989999999999999999 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCH Q ss_conf 9986179994789999999999861123 Q T0584 317 EALDAVDMPDRVRDRFTALADFVVVRKR 344 (352) Q Consensus 317 ~~L~~l~~~~~~k~~L~~l~~~~~~R~k 344 (352) +.|+.+| +++.|+.|..|++++++|.. T Consensus 316 ~~L~~lp-~~~~k~~L~~l~~~i~~R~~ 342 (342) T 1wy0_A 316 EALRILP-KSKARMDLELLAKFIVEREY 342 (342) T ss_dssp TTGGGSC-CCHHHHHHHHHHHHTTTCC- T ss_pred HHHHCCC-CCHHHHHHHHHHHHHHHCCC T ss_conf 9986699-97899999999999975889 No 4 >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Probab=100.00 E-value=0 Score=481.46 Aligned_cols=287 Identities=22% Similarity=0.208 Sum_probs=259.5 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHH Q ss_conf 77865466515872178999999999739997899999999999999997527877886555578721000464278998 Q T0584 42 IDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILV 121 (352) Q Consensus 42 ~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~ 121 (352) +.++.+|.+.+||||+||.|++++++++|++.+.+.++|+++||+|+||||||||||+|++|||+||+|.+||++.|||+ T Consensus 13 l~ep~~y~~~~gGKr~Rp~l~~~~~~~~~~~~~~~~~~a~aiEllH~asLIhDDI~D~s~~RRG~pt~h~~~G~~~Ail~ 92 (301) T 2q80_A 13 LLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINS 92 (301) T ss_dssp HTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHH T ss_conf 99999999858996199999999998819988999999999999999999825656899887999760522574889999 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999997179900799999999999987788778876426899-998999999986526899999999998639 Q T0584 122 GDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDR-VSVEECLEMEGNKTGALLACASSIGAVLGG 200 (352) Q Consensus 122 Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~-~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag 200 (352) ||+|++++++.++.++++. ++..+++++..+++||.+|+.+..+.. .+.++|++|+.+|||+||++||.+|++++| T Consensus 93 Gd~l~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~Gq~ld~~~~~~~~~~s~~~y~~~i~~KTa~Lf~~~~~~ga~~~~ 169 (301) T 2q80_A 93 ANYVYFLGLEKVLTLDHPD---AVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD 169 (301) T ss_dssp HHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8899988887520123519---9999999999985126758763023455769999999988489999999988774220 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 99989999999988999999999988751378456167623233405677899999863896789999997531000344 Q T0584 201 ADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDF 280 (352) Q Consensus 201 ~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~ 280 (352) .++ .+.+||+++|+||||+||++|++++++.+|||+|+||++||+|||++++++..+. .+++..++... T Consensus 170 ~~~----~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~al~~~~~-~~~l~~~l~~~------ 238 (301) T 2q80_A 170 YKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPE-STQVQNILRQR------ 238 (301) T ss_dssp CCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTT-CCHHHHHHHHT------ T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCC-HHHHHHHHHCC------ T ss_conf 027----8999998999999863576760188654588735487669833999999883972-79999998655------ Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 568989999999999864908999999999999999998617999478999999999986112 Q T0584 281 ANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVRK 343 (352) Q Consensus 281 ~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~ 343 (352) ..+.+.++++++++.++|++++++.++..|.++|++.|+.+|.++..+..+..|+.++.+|. T Consensus 239 -~~~~~~~~~i~~~l~~~ga~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~Ll~~L~~~~~~r~ 300 (301) T 2q80_A 239 -TENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEEN 300 (301) T ss_dssp -CCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCC--- T ss_pred -CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC T ss_conf -79999999999999985959999999999999999999719999899999999999998537 No 5 >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 2f94_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* Probab=100.00 E-value=0 Score=467.05 Aligned_cols=297 Identities=20% Similarity=0.152 Sum_probs=264.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 88777777865466515872178999999999739997-------89999999999999999752787788655557872 Q T0584 36 AYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAP-------EVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDT 108 (352) Q Consensus 36 ~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~-------~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt 108 (352) .....|+.+...|.+ .||||+||++|++++++++++. +.++.+|++|||+|+||||||||||+|++|||+|| T Consensus 60 ~~~~~~l~~~l~Y~~-~GGKr~R~llv~~~~~~l~~~~~~~~~~~~~a~~la~~iEllH~asLIhDDI~D~s~~RRG~pt 138 (374) T 2qis_A 60 GDAIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQIC 138 (374) T ss_dssp HHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEEC T ss_pred HHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH T ss_conf 579999999986457-8840066999999999855876688678999999999999999999999874049998897731 Q ss_pred EECCCCCHH-HHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCHHHHHHHH Q ss_conf 100046427-8998999999999999717--9900799999999999987788778876426899-----9989999999 Q T0584 109 VWKVHGPAQ-AILVGDALFALANEVLLEL--GTVEAGRATRRLTKASRSLIDGQAQDISYEHRDR-----VSVEECLEME 180 (352) Q Consensus 109 ~~~~~G~~~-Ail~Gd~l~~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~-----~s~~~y~~~~ 180 (352) +|.+||++. |||.||+|++.+++++... +.+...++++.+++++..+++||.+|+.+..+.. +|+++|++|+ T Consensus 139 ~h~~~g~~~~AI~~gd~L~~~~~~ll~~~~~~~~~~~~l~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~Y~~ii 218 (374) T 2qis_A 139 WYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIV 218 (374) T ss_dssp GGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 63068964889951999999999999884246457999999999999999865899998750466663316799999999 Q ss_pred HHHHHHH-HHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHH Q ss_conf 8652689-999999999863999-98999999998899999999998875137845616762323340567789999986 Q T0584 181 GNKTGAL-LACASSIGAVLGGAD-ERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALA 258 (352) Q Consensus 181 ~~KTa~L-f~~a~~~ga~lag~~-~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~ 258 (352) .+|||+| |.+|+.+|++++|.+ +.....+.+||.++|++|||+||++|++|+++.+|| +|+||++||+|||++++++ T Consensus 219 ~~KTa~l~~~~~~~~~~~~ag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Di~egK~Tlpvi~al~ 297 (374) T 2qis_A 219 KYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKCSWLVVQCLQ 297 (374) T ss_dssp HHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-CCCHHHCCCCHHHHHHHHH T ss_conf 987457899999998876414662888988888999999999861677761089666388-6775746902699999999 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 38967899999975310003445689899999999998649089999999999999999986179994789999999999 Q T0584 259 AGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADF 338 (352) Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~ 338 (352) .+++++++.+.-+.. ..++++++++++++.++|+.+++...++.+.+++++.|+.+| ++..++.|..++++ T Consensus 298 ~a~~~~r~~L~~~~~--------~~~~e~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~-~~~~~~~L~~l~~~ 368 (374) T 2qis_A 298 RATPEQYQILKENYG--------QKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYA-APLPPAVFLGLARK 368 (374) T ss_dssp HCCHHHHHHHHHHTT--------CCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHH T ss_pred HCCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHH T ss_conf 399999999999867--------999899999999999878899999999999999999998189-93689999999999 Q ss_pred HHHCC Q ss_conf 86112 Q T0584 339 VVVRK 343 (352) Q Consensus 339 ~~~R~ 343 (352) +++|. T Consensus 369 i~kR~ 373 (374) T 2qis_A 369 IYKRR 373 (374) T ss_dssp HC--- T ss_pred HHCCC T ss_conf 96088 No 6 >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Probab=100.00 E-value=0 Score=468.25 Aligned_cols=294 Identities=19% Similarity=0.143 Sum_probs=258.1 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEC Q ss_conf 77777865466515872178999999999739997-------89999999999999999752787788655557872100 Q T0584 39 FGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAP-------EVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWK 111 (352) Q Consensus 39 ~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~-------~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~ 111 (352) ..|+.+...|.+ .||||+||+||+++++++|+.. ..++++|+++|++|+||||||||||+|++|||+||+|+ T Consensus 56 ~~~l~~~l~y~~-~GGKr~Rp~l~l~~~~~~~~~~~~~~~~~~~a~~~a~aiEliH~asLihDDI~D~s~~RRG~pt~h~ 134 (367) T 1uby_A 56 VARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYK 134 (367) T ss_dssp HHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGG T ss_pred HHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 999999985446-8852256999999999847997665678999999999999999999998488607877799864200 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-H--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHH Q ss_conf 04642789989999999999997-1--7990079999999999998778877887642689-----99989999999865 Q T0584 112 VHGPAQAILVGDALFALANEVLL-E--LGTVEAGRATRRLTKASRSLIDGQAQDISYEHRD-----RVSVEECLEMEGNK 183 (352) Q Consensus 112 ~~G~~~Ail~Gd~l~~~a~~~l~-~--~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~-----~~s~~~y~~~~~~K 183 (352) +||++.|++.||+|+..++..+. . .+.+...++++.+++++..++.||.+|+.+.... ..++++|++|+++| T Consensus 135 ~~g~~~ail~gd~ll~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~GQ~ld~~~~~~~~~~~~~~t~~~y~~ii~~K 214 (367) T 1uby_A 135 KEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYK 214 (367) T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHH T ss_pred CCCHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH T ss_conf 00134888721448999999999860558667999999998753589999999987502443012226699999999875 Q ss_pred HHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCC Q ss_conf 2689--99999999986399998999999998899999999998875137845616762323340567789999986389 Q T0584 184 TGAL--LACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGG 261 (352) Q Consensus 184 Ta~L--f~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~ 261 (352) ||.| |..++..++++++.+++..+.+.+||.++|+||||+||++|++|+++.+|| +|+||++||+|||++++++.++ T Consensus 215 Ta~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~G~Dl~egK~Tlpii~al~~~~ 293 (367) T 1uby_A 215 TAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCSWLVVQCLQRVT 293 (367) T ss_dssp THHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCCHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHCCH-HHHHHCCCCCCHHHHHHHHHCC T ss_conf 312567899987610010111677644566775251189985156553145010201-2344405877599999999399 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 67899999975310003445689899999999998649089999999999999999986179994789999999999861 Q T0584 262 AASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVV 341 (352) Q Consensus 262 ~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~ 341 (352) +++++++..+... .++++++++++++.++|++++++..++.+.+++.+.++.+| ++..|+.|..|++++++ T Consensus 294 ~~~r~~l~~~~~~--------~~~e~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~~~-~~~~k~~L~~l~~~i~~ 364 (367) T 1uby_A 294 PEQRQLLEDNYGR--------KEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHS-NRLPKEIFLGLAQKIYK 364 (367) T ss_dssp HHHHHHHHHHTTC--------CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHC-SSSCTHHHHHHHHHHCC T ss_pred HHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH T ss_conf 9999999998679--------99999999999999878699999999999999999976279-83899999999999975 Q ss_pred CC Q ss_conf 12 Q T0584 342 RK 343 (352) Q Consensus 342 R~ 343 (352) |. T Consensus 365 R~ 366 (367) T 1uby_A 365 RQ 366 (367) T ss_dssp CC T ss_pred CC T ss_conf 87 No 7 >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Probab=100.00 E-value=0 Score=472.49 Aligned_cols=297 Identities=21% Similarity=0.198 Sum_probs=259.0 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHH Q ss_conf 77786546651587217899999999973999789999999999999999752787788655557872100046427899 Q T0584 41 WIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAIL 120 (352) Q Consensus 41 ~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail 120 (352) .+.++.+|.+.+||||+||.|++++++++|++.+.+.++|+++|++|+||||||||+|+|++|||+||+|.+||++.||+ T Consensus 27 ~l~~~~~y~~~~~GKr~Rp~l~~~~~~~~~~~~~~~~~~A~aiEllH~asLihDDI~D~s~~RRG~pt~h~~~G~~~Ail 106 (340) T 2e8v_A 27 LISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTIN 106 (340) T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHH T ss_conf 99999999982899608999999999882998899999999999999999987667779988588827888638606675 Q ss_pred HHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999971799007--99999999999987788778876426---8999989999999865268999999999 Q T0584 121 VGDALFALANEVLLELGTVEA--GRATRRLTKASRSLIDGQAQDISYEH---RDRVSVEECLEMEGNKTGALLACASSIG 195 (352) Q Consensus 121 ~Gd~l~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~~Gq~~dl~~~~---~~~~s~~~y~~~~~~KTa~Lf~~a~~~g 195 (352) +||+|+++++++++.++.+.. .+++..+++++..++.||.+|+.|.. +...++++|++|+.+|||+||++||++| T Consensus 107 ~Gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~t~e~Yl~ii~~KTa~Lf~~~~~~g 186 (340) T 2e8v_A 107 TANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLM 186 (340) T ss_dssp HHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 24389988999998727731689999999864114453140246553310356666799999999988899999999999 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCH-----HHHHHHHH Q ss_conf 9863999989999999988999999999988751378456167623233405677899999863896-----78999999 Q T0584 196 AVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGA-----ASERLGEI 270 (352) Q Consensus 196 a~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~-----~~~~~~~~ 270 (352) ++++|+++ ..+.+.+||+++|+||||+||++|++++++.+|||+|+||++||+|||++++++..+. ..+++..+ T Consensus 187 a~lag~~~-~~~~l~~~g~~lGiafQI~DDild~~~~~~~~gK~~~~Dl~~gk~Tlp~i~al~~~~~~~~~~~~~~l~~~ 265 (340) T 2e8v_A 187 EALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRI 265 (340) T ss_dssp HHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHH T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHH T ss_conf 99850014-44779999999999995146777612986443988785886692309999999866652265999999999 Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHHHHCCH Q ss_conf 75310003445689899999999998-64908999999999999999-----9986179994789999999999861123 Q T0584 271 LTADAKASDFANFSEEEFAARAALIE-EAGGREWTADEARRQHTIAI-----EALDAVDMPDRVRDRFTALADFVVVRKR 344 (352) Q Consensus 271 l~~~~~~~~~~~~~~e~i~~i~~~i~-~~ga~e~a~~~~~~~~~~A~-----~~L~~l~~~~~~k~~L~~l~~~~~~R~k 344 (352) +.... .+.+...++++++. ++|+++|++..+..+.+++. +.|..++..+..+..|..+..|+++|.. T Consensus 266 ~~~~~-------~~~d~~~~~i~~l~~~~g~l~~a~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~~~~li~r~~ 338 (340) T 2e8v_A 266 LLLRT-------SDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSDTATNLHDELLYIIDHLS 338 (340) T ss_dssp HHHTC-------CCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC------------------------------- T ss_pred HHCCC-------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 85689-------99899999999999861699999999999999845470888889866127999999999999999885 Q ss_pred H Q ss_conf 2 Q T0584 345 E 345 (352) Q Consensus 345 ~ 345 (352) . T Consensus 339 ~ 339 (340) T 2e8v_A 339 E 339 (340) T ss_dssp - T ss_pred C T ss_conf 4 No 8 >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genomics; 1.55A {Thermus thermophilus HB8} Probab=100.00 E-value=0 Score=468.12 Aligned_cols=313 Identities=27% Similarity=0.323 Sum_probs=266.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999986320668899888777777865466515872178999999999739997899999999999999997 Q T0584 12 GRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSL 91 (352) Q Consensus 12 ~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asL 91 (352) .+..+...+.+.+..-.|. +....+|...+||||+||.||+++++++|++.+.++++|+++||+|+||| T Consensus 8 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~gGK~~R~~l~l~~~~~~~~~~~~~~~~A~avEllH~asL 76 (330) T 1wmw_A 8 IRQALQERLLARLDHPDPL-----------YRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVL 76 (330) T ss_dssp HHHHHHHHHHHHTCCSSHH-----------HHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHH-----------HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999764897079-----------99999987507806298999999999819887899999999999999999 Q ss_pred HCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC- Q ss_conf 527877886555578721000464278998999999999999717--99007999999999999877887788764268- Q T0584 92 LHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLEL--GTVEAGRATRRLTKASRSLIDGQAQDISYEHR- 168 (352) Q Consensus 92 iHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~- 168 (352) |||||+|+|++|||+||+|.+||++.||++||+|++++|+++++. .......++..+++++..++.||.+|+.+..+ T Consensus 77 ihDDi~D~s~~RRG~pt~h~~~G~~~Ail~Gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~ 156 (330) T 1wmw_A 77 VHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGG 156 (330) T ss_dssp HHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS T ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEHHHHCCCCC T ss_conf 83888169987412211145311023103468888789999987452264329999988887335523000011101221 Q ss_pred -CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHC Q ss_conf -999989999999865268999-999999986399998999999998899999999998875137845616762323340 Q T0584 169 -DRVSVEECLEMEGNKTGALLA-CASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQ 246 (352) Q Consensus 169 -~~~s~~~y~~~~~~KTa~Lf~-~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~ 246 (352) .+.+.++|++++..||+++|. +++.+|++++|.++. +.+.+||+++|+||||+||++|+++++ ..|||.|+||++ T Consensus 157 ~~~~~~~~y~~~i~~kta~l~~~~~~~~ga~la~~~~~--~~l~~~g~~lG~afQi~DDllD~~~~~-~~gK~~g~Dl~~ 233 (330) T 1wmw_A 157 TFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPP--AAYEEGGLRLGTAFQIVDDVLNLEGGE-AYGKERAGDLYE 233 (330) T ss_dssp SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHHHHHHHSCSC-CCSSSTTHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHCCCCC T ss_conf 10114999999988877777888998860232322100--479998887899999988777641113-320122002136 Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH----C Q ss_conf 567789999986389678999999753100034456898999999999986490899999999999999999861----7 Q T0584 247 RKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDA----V 322 (352) Q Consensus 247 gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~----l 322 (352) ||+|||++++++..+.+++..+..+.... ....++++++++++++.++|++++++..++.|.++|++.++. + T Consensus 234 gk~Tlpii~ale~~~~~~~~~l~~~l~~~----~~~~~~~~~~~i~~~i~~~ga~~~~~~~~~~~~~~a~~~l~~~~~~~ 309 (330) T 1wmw_A 234 GKRTLILLRFLEEAPPEERARALALLALP----REAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDL 309 (330) T ss_dssp TCCCHHHHHHHHHSCHHHHHHHHHHHTSC----GGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 77619999999982477899999997445----66899999999999999859599999999999999999998631139 Q ss_pred CCCHHHHHHHHHHHHHHHHCC Q ss_conf 999478999999999986112 Q T0584 323 DMPDRVRDRFTALADFVVVRK 343 (352) Q Consensus 323 ~~~~~~k~~L~~l~~~~~~R~ 343 (352) | +++.++.|+.+++++++|. T Consensus 310 p-~~~~~~~L~~l~~~~~~R~ 329 (330) T 1wmw_A 310 P-GKEALDHLRGLLAALVERR 329 (330) T ss_dssp S-CHHHHHHHHHHHHHHHHC- T ss_pred C-CHHHHHHHHHHHHHHHHCC T ss_conf 9-8399999999999997688 No 9 >2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3cc9_A* 3ez3_A* Probab=100.00 E-value=0 Score=463.52 Aligned_cols=322 Identities=18% Similarity=0.151 Sum_probs=261.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC------HHHHHH Q ss_conf 78999999999999999998632066889988877777786546651587217899999999973999------789999 Q T0584 5 VTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAA------PEVGVP 78 (352) Q Consensus 5 ~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~------~~~~~~ 78 (352) +...+++.+..+...|.... +.+ ++......|......|.+ .||||+||+||+++++++|+. .+.+++ T Consensus 36 f~~~~~~~~~~i~~~l~~~~--~~~---~~~~~~~~~~~~~~~y~~-~GGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (395) T 2ihi_A 36 FRNMYDKYRDAFLSHLNEYS--LEE---EIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAAC 109 (395) T ss_dssp TTTTHHHHHHHHHHHHHTSS--CCH---HHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCC--CCC---CHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH T ss_conf 99999999999999988567--873---278899999999986678-880116599999999982899888414999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH--HHHHHHHHC--CCCCHHHHHHHHHHHHHH Q ss_conf 9999999999997527877886555578721000464278998999999--999999717--990079999999999998 Q T0584 79 GAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFA--LANEVLLEL--GTVEAGRATRRLTKASRS 154 (352) Q Consensus 79 ~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~--~a~~~l~~~--~~~~~~~~~~~~~~~~~~ 154 (352) +|++||++|+||||||||||+|++|||+||+|.+||++.||++||+++. .++.++... +.+...++++.++++... T Consensus 110 ~a~aiEllH~asLIHDDI~D~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~ii~~~~~~~~~ 189 (395) T 2ihi_A 110 LAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLK 189 (395) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999998748860889999974331067815888725399999999999987325816799999999999999 Q ss_pred HHHHHHHHHHHCCC------------------------CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCC--HHHHH Q ss_conf 77887788764268------------------------9999899999998652689-999999999863999--98999 Q T0584 155 LIDGQAQDISYEHR------------------------DRVSVEECLEMEGNKTGAL-LACASSIGAVLGGAD--ERTAD 207 (352) Q Consensus 155 ~~~Gq~~dl~~~~~------------------------~~~s~~~y~~~~~~KTa~L-f~~a~~~ga~lag~~--~~~~~ 207 (352) +++||.+|+.|..+ ..+++++|++|+.+|||+| |.+|+.+|++++|.+ ....+ T Consensus 190 ~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Y~~~i~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~ 269 (395) T 2ihi_A 190 TIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYK 269 (395) T ss_dssp HHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 99899999998750011577765201111001101222438999999999974489999999999998714631089999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHH Q ss_conf 99999889999999999887513784561676232334056778999998638967899999975310003445689899 Q T0584 208 TLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEE 287 (352) Q Consensus 208 ~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ 287 (352) .+.+||.++|+||||+||++|++|+++.+|| +|+||++||+|||++++++.+++.+++.+..... ..+.+. T Consensus 270 ~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Di~egK~Tlpii~al~~~~~~~r~~L~~~~~--------~~~~~~ 340 (395) T 2ihi_A 270 KIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYG--------KNNLAC 340 (395) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC---------CCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC-CCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHC--------CCCHHH T ss_conf 9999999999999985776760089543597-0157767970599999999699999999999867--------998789 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC Q ss_conf 9999999986490899999999999999999861799947899999999998611 Q T0584 288 FAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVR 342 (352) Q Consensus 288 i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R 342 (352) ++.+.+++.++|+.++++..++.+.+++++.++.+| ++..+..|..+++.+.++ T Consensus 341 ~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~-~~~~~~ll~~lle~i~k~ 394 (395) T 2ihi_A 341 VKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELH-HEGIEYVLKYLLEILFTG 394 (395) T ss_dssp HHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHC---- T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCC T ss_conf 999999999859299999999999999999787378-289999999999988158 No 10 >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl allyl pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* Probab=100.00 E-value=0 Score=456.53 Aligned_cols=293 Identities=17% Similarity=0.146 Sum_probs=253.2 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE Q ss_conf 777865466515872178999999999739997-----------899999999999999997527877886555578721 Q T0584 41 WIDAQGNPADGDGGKAVRPALAVLSAEVTGAAP-----------EVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTV 109 (352) Q Consensus 41 ~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~-----------~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~ 109 (352) ++.....|.+ +||||+||+|++++++++++.. ..++.+|++||++|+||||||||||+|++|||+||+ T Consensus 35 ~~~~~~~y~~-~GGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~iEllH~asLihDDi~D~s~~RRG~pt~ 113 (362) T 1yhl_A 35 YLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCW 113 (362) T ss_dssp HHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECG T ss_pred HHHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 9999996568-985340369999999996364445543256778999999999999999999984304799888999854 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------C Q ss_conf 00046427899899999999999971----799007999999999999877887788764268----------------9 Q T0584 110 WKVHGPAQAILVGDALFALANEVLLE----LGTVEAGRATRRLTKASRSLIDGQAQDISYEHR----------------D 169 (352) Q Consensus 110 ~~~~G~~~Ail~Gd~l~~~a~~~l~~----~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~----------------~ 169 (352) |.+||++.||++||+|++.++..+.. .+++...+++..++++...++.||.+|+.+... . T Consensus 114 h~~~g~~~ai~~gd~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~g~~~d~e~~~~~~~~~~ 193 (362) T 1yhl_A 114 YRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFA 193 (362) T ss_dssp GGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCT T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC T ss_conf 56368760024536999999999998752467355799999999999999988860344423574234888764115631 Q ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCC Q ss_conf 999899999998652689-99999999986399998-9999999988999999999988751378456167623233405 Q T0584 170 RVSVEECLEMEGNKTGAL-LACASSIGAVLGGADER-TADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQR 247 (352) Q Consensus 170 ~~s~~~y~~~~~~KTa~L-f~~a~~~ga~lag~~~~-~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~g 247 (352) ++|+++|++|+.+|||+| |.+||.+|++++|++++ ..+.+.+||.++|+||||+||++|++|+++.+|| +|+||++| T Consensus 194 ~~t~~~Y~~~i~~KTa~L~~~~~~~~g~~~ag~~~~~~~~~l~~~g~~lGiaFQI~DD~lD~~gd~~~~GK-~g~Dl~eg 272 (362) T 1yhl_A 194 EFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK-VGTDIEDA 272 (362) T ss_dssp TCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTT T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC-CCCHHHCC T ss_conf 07999999999986106999999986454202204888876776899998999985651345258888698-74577379 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC-H Q ss_conf 677899999863896789999997531000344568989999999999864908999999999999999998617999-4 Q T0584 248 KKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMP-D 326 (352) Q Consensus 248 K~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~-~ 326 (352) |+|||++++++.+++++++.+.-+.. ..+++.++++++++.++|+.+++...++.+.+++.+.|+.++.+ + T Consensus 273 K~Tlp~i~al~~~~~~~~~~l~~~~~--------~~d~~~i~~v~~i~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~~~ 344 (362) T 1yhl_A 273 KCSWLAVTFLGKANAAQVAEFKANYG--------DKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSP 344 (362) T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHTT--------CCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCH T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 10699999998099999999999868--------9998999999999998698999999999999999999986779867 Q ss_pred HHHHHHHHHHHHHHHCC Q ss_conf 78999999999986112 Q T0584 327 RVRDRFTALADFVVVRK 343 (352) Q Consensus 327 ~~k~~L~~l~~~~~~R~ 343 (352) ..++.|..+++++++|. T Consensus 345 ~~~~~l~~l~~~i~~R~ 361 (362) T 1yhl_A 345 TFAESVAVVWEKTHKRK 361 (362) T ss_dssp HHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999987398 No 11 >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Probab=100.00 E-value=0 Score=456.50 Aligned_cols=325 Identities=15% Similarity=0.110 Sum_probs=265.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH----------- Q ss_conf 789999999999999999986320668899888777777865466515872178999999999739997----------- Q T0584 5 VTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAP----------- 73 (352) Q Consensus 5 ~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~----------- 73 (352) ....+.+..+.+...|...++...+. ......|+.+...|.+ +||||+||++|+++++++++.. T Consensus 25 ~~~~f~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~y~~-~GGKr~Rp~lv~~~~~~l~~~~~~~~~~~~~~~ 99 (390) T 3dyh_A 25 PMQMFMQVYDEIQMFLLEELELKFDM----DPNRVRYLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGA 99 (390) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 79999999999999998624202579----8689999999996236-885530339999999997166766420000000 Q ss_pred ------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH----CCCCCHHH Q ss_conf ------89999999999999999752787788655557872100046427899899999999999971----79900799 Q T0584 74 ------EVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLE----LGTVEAGR 143 (352) Q Consensus 74 ------~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~----~~~~~~~~ 143 (352) ..++.+|++||+||+||||||||||+|++|||+||+|++||++.||++||++++.++..+.. .+.+...+ T Consensus 100 ~~~~~~~~a~~la~~iEllH~asLihDDI~D~s~~RRG~pt~h~~~g~~~ai~~gD~ll~~a~~~~~~~~~~~~~~~~~~ 179 (390) T 3dyh_A 100 RRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQD 179 (390) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 01356899999999999999999987311479987899976223668236666505899999999998523677077999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC----------------CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHH-H Q ss_conf 9999999999877887788764268----------------9999899999998652689-99999999986399998-9 Q T0584 144 ATRRLTKASRSLIDGQAQDISYEHR----------------DRVSVEECLEMEGNKTGAL-LACASSIGAVLGGADER-T 205 (352) Q Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~----------------~~~s~~~y~~~~~~KTa~L-f~~a~~~ga~lag~~~~-~ 205 (352) ++..++++...++.||.+|+.+..+ .++|+++|++|+.+|||+| |.+||.+|++++|+.++ . T Consensus 180 i~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~t~~~Y~~ii~~KTa~l~~~~~~~~g~~lag~~~~~~ 259 (390) T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVD 259 (390) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH T ss_conf 99999999999875775110455235310155541032342217899999999987526899999999987612103556 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 99999998899999999998875137845616762323340567789999986389678999999753100034456898 Q T0584 206 ADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSE 285 (352) Q Consensus 206 ~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 285 (352) .+.+.+||.++|+||||+||++|++|+++.+|| +|+||++||+|||++++++.+++++++.+.-+. ...++ T Consensus 260 ~~~l~~~g~~lG~aFQi~DD~LD~~gd~~~~GK-~g~Dl~egK~Tlpii~al~~~~~~~r~~l~~~~--------~~~d~ 330 (390) T 3dyh_A 260 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANY--------GSGDS 330 (390) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTT--------TCCCH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC-CCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH--------CCCCH T ss_conf 766899999999999998862233158888499-788563683059999999859999999999986--------79998 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCC Q ss_conf 999999999986490899999999999999999861799-9478999999999986112 Q T0584 286 EEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDM-PDRVRDRFTALADFVVVRK 343 (352) Q Consensus 286 e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~-~~~~k~~L~~l~~~~~~R~ 343 (352) +.++++++++.++|+.+++...++.+.+++.++|+.++. ++..+..|..+++++++|. T Consensus 331 ~~v~~v~~l~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~~~~~~~~l~~ll~kI~kR~ 389 (390) T 3dyh_A 331 EKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSPGFAASVETLWGKTYKRQ 389 (390) T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCC T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 99999999999869789999999999999999998475678789999999999996788 No 12 >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Probab=100.00 E-value=0 Score=445.24 Aligned_cols=288 Identities=30% Similarity=0.389 Sum_probs=243.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 75789999999999999999986320668899888777777865466515872178999999999739997899999999 Q T0584 3 LDVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVA 82 (352) Q Consensus 3 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~Aaa 82 (352) |+++..++..++.|++.|.+.++..++.-. ++.+..+|.+.+||||+||.|++++++++|++.+.++++|+| T Consensus 1 m~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--------~l~~~~~y~~~~gGKriRp~l~~~~~~~~g~~~~~~~~~A~a 72 (299) T 1rqj_A 1 MDFPQQLEACVKQANQALSRFIAPLPFQNT--------PVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAA 72 (299) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTTS--------HHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 983999999999999999998763668983--------599999988708965187999999999809961678888899 Q ss_pred HHHHHHHHHHCCCCCC--CCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--HH---HHHHHHHHH--HH Q ss_conf 9999999975278778--865555787210004642789989999999999997179900--79---999999999--99 Q T0584 83 VELVHNFSLLHDDLMD--GDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVE--AG---RATRRLTKA--SR 153 (352) Q Consensus 83 vEliH~asLiHDDi~D--~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~--~~---~~~~~~~~~--~~ 153 (352) +|++|+||||||||+| +|++|||+||+|.+||++.||++||++++.++..++.++.+. .. ++...++.+ +. T Consensus 73 iEllH~asLIhDDi~D~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 152 (299) T 1rqj_A 73 VECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIA 152 (299) T ss_dssp HHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999998201244444412468861024072166886365688999999867895333789999999999986599 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 87788778876426899998999999986526899999999998639-99989999999988999999999988751378 Q T0584 154 SLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGG-ADERTADTLEKYGYHLGLAFQAVDDLLGIWGD 232 (352) Q Consensus 154 ~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~ 232 (352) .+++||.+|+.+... ..++++|++|+.+|||+||.++|.+|+++++ .+++..+.+.+||.++|+||||+||++|++++ T Consensus 153 ~l~~GQ~lDl~~~~~-~~~~~~y~~i~~~KT~~l~~~~~~~~a~~~~~~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~ 231 (299) T 1rqj_A 153 GMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299) T ss_dssp THHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999980178-9999999999999876478878874245565321478899999999999999999887653063 Q ss_pred HHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 45616762323340567789999986389678999999753100034456898999999999986490899999999999 Q T0584 233 PDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQH 312 (352) Q Consensus 233 ~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~ 312 (352) ++++|||.|+|+++||+|||++++++. ++...+++. T Consensus 232 ~~~~GK~~g~Dl~egk~Tlp~i~ale~--------------------------------------------a~~~~~~~~ 267 (299) T 1rqj_A 232 TATLGKRQGADQQLGKSTYPALLGLEQ--------------------------------------------ARKKARDLI 267 (299) T ss_dssp HHHHSSCTTHHHHHTCCCHHHHHCHHH--------------------------------------------HHHHHHHHH T ss_pred HHHCCCCCCHHHHCCCCCHHHHHHHHH--------------------------------------------HHHHHHHHH T ss_conf 452198620187669520999999998--------------------------------------------799999999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 9999998617999478999999999986112 Q T0584 313 TIAIEALDAVDMPDRVRDRFTALADFVVVRK 343 (352) Q Consensus 313 ~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~ 343 (352) +++++.|..++..+..++.|+.+++|+++|. T Consensus 268 ~~~~~~l~~l~~~~~~~~~L~~l~~~i~~R~ 298 (299) T 1rqj_A 268 DDARQSLKQLAEQSLDTSALEALADYIIQRN 298 (299) T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 9999999861123500899999999998578 No 13 >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Probab=100.00 E-value=0 Score=444.25 Aligned_cols=282 Identities=26% Similarity=0.407 Sum_probs=239.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 977578999999999999999998632-0668899888777777865466515872178999999999739997899999 Q T0584 1 MSLDVTALLERGRTLATPVLRAAVDRL-APPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPG 79 (352) Q Consensus 1 m~~~~~~~l~~~~~~v~~~l~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~ 79 (352) |+|.+..+ ++ ...|+..|.+.+... +|.+. ++.+|.+.+||||+||+|++++++++|++++.++++ T Consensus 1 ~~~n~~~~-~~-~~~v~~~l~~~~~~~~~~~l~-----------~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~ 67 (295) T 3ipi_A 1 MSLNIEEW-EE-YRYVEAGIKESITLIEDPGLK-----------KMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNA 67 (295) T ss_dssp ---CGGGS-HH-HHHHHHHHHHHHHTCCSHHHH-----------HHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHH T ss_pred CCCCHHHH-HH-HHHHHHHHHHHHCCCCCHHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 99967999-99-999999999873325884799-----------999998808975477999999999819998999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999752787788655557872100046427899899999999999971799007999999999999877887 Q T0584 80 AVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQ 159 (352) Q Consensus 80 AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq 159 (352) |+++|++|+||||||||||+|++|||+||+|.+||++.||++||+|+++++++++.+++ ++++.+++++..++.|| T Consensus 68 AaavEllH~asLIhDDI~D~s~~RRG~pt~h~~~G~~~Ail~gd~Ll~~a~~~l~~~~~----~~~~~~~~~~~~~~~GQ 143 (295) T 3ipi_A 68 ALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYGE----KVIQDFGKAGMDMAEGE 143 (295) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGCH----HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHCCH T ss_conf 99999999999996675259977589834888809469899889999999999850458----99999999999983722 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC Q ss_conf 78876426899998999999986526899999999998639999899999999889999999999887513784561676 Q T0584 160 AQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQ 239 (352) Q Consensus 160 ~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~ 239 (352) .+|+.+.. ..+++++|++|+.+|||+||++||.+|++++|++++..+.+.+||+++|+||||+||++|+++++ T Consensus 144 ~~D~~~~~-~~~~~~~y~~ii~~KTa~l~~~~~~lga~lag~~~~~~~~l~~~g~~lG~afQi~DD~lD~~~~~------ 216 (295) T 3ipi_A 144 VLDLKLED-ESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVV------ 216 (295) T ss_dssp HHHHC--------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ T ss_pred HHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------ T ss_conf 56530458-99999999999999889999989999999859999999999999999999999999988613887------ Q ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 23233405677899999863896789999997531000344568989999999999864908999999999999999998 Q T0584 240 TWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEAL 319 (352) Q Consensus 240 ~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L 319 (352) .|+|+++||+|+|++++++..+.+ +++++.+.++.+.++|+++| T Consensus 217 ~GkDl~~gk~Tlp~i~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~a~~~l 260 (295) T 3ipi_A 217 EGKESKFTSETLPHIYMKSTSKEE------------------------------------ALKKSIDCVKLHVAAAKETL 260 (295) T ss_dssp HC-------CCHHHHHTTTSCHHH------------------------------------HHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHCCCCCHHHHHHHHCCCHH------------------------------------HHHHHHHHHHHHHHHHHHHH T ss_conf 787041498249999986528699------------------------------------99999999999999999998 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 617999478999999999986112 Q T0584 320 DAVDMPDRVRDRFTALADFVVVRK 343 (352) Q Consensus 320 ~~l~~~~~~k~~L~~l~~~~~~R~ 343 (352) +.+| ++..++.|..+++|+.... T Consensus 261 ~~l~-~~~a~~~l~~l~d~it~d~ 283 (295) T 3ipi_A 261 ETFR-ECPARDKLFQITDYITVDM 283 (295) T ss_dssp TTSC-CSHHHHHHHHHHHHTTGGG T ss_pred HCCC-CCHHHHHHHHHHHHHHHHH T ss_conf 6179-9769999999999999999 No 14 >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} Probab=100.00 E-value=0 Score=433.82 Aligned_cols=290 Identities=29% Similarity=0.401 Sum_probs=231.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 57899999999999999999863206688998887777778654665158721789999999997399978999999999 Q T0584 4 DVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAV 83 (352) Q Consensus 4 ~~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~Aaav 83 (352) ++...+......|+..|.+.+...... .++. ....+.+.++|.+.+||||+||.||+++++++|++.+.++++|+|+ T Consensus 38 ~~~~~l~~~~~~ve~~l~~~l~~~~~~-~~~~--~p~~l~~a~~y~~~~GGKrlRp~L~l~~~~~~g~~~~~~~~~Aaai 114 (335) T 2h8o_A 38 NFETRLRENAAKTEALLGHLLSGEARA-DEIT--RPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAAL 114 (335) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCT-TCCC--CCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCC--CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 799999999999999999866642244-4346--9878999999987468543999999999998399878999999999 Q ss_pred HHHHHHHHHCCCCC--CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHH--HHH Q ss_conf 99999997527877--8865555787210004642789989999999999997179900799----999999999--987 Q T0584 84 ELVHNFSLLHDDLM--DGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGR----ATRRLTKAS--RSL 155 (352) Q Consensus 84 EliH~asLiHDDi~--D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~----~~~~~~~~~--~~~ 155 (352) ||||+||||||||+ |+|++|||+||+|.+||++.|||+||+|++.+|++++..+.+.... .+..++... ..+ T Consensus 115 EliH~aSLIHDDI~~~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 194 (335) T 2h8o_A 115 ECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGM 194 (335) T ss_dssp HHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999987986578887568962099885939999999999998889998502204678889999999999999988 Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 78877887642689999899999998652689999999999863999989999999988999999999988751378456 Q T0584 156 IDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDA 235 (352) Q Consensus 156 ~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~ 235 (352) ..||..+... .+...++++|++|+++|||+||.+||.+|++++|++++..+.+.+||+++|+||||+||++|++|+++. T Consensus 195 ~~~~~~~~~~-~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~l~~~~~~~~~~l~~~g~~lG~AFQI~DDilD~~gd~~~ 273 (335) T 2h8o_A 195 AGGQALDLAA-EKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAAT 273 (335) T ss_dssp HHHHHHHHHH-HHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----- T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 5238998875-122005999999884502206766999889987615789999999999999998886377643289788 Q ss_pred HCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 16762323340567789999986389678999999753100034456898999999999986490899999999999999 Q T0584 236 TGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIA 315 (352) Q Consensus 236 ~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A 315 (352) +|||.|+|+++||+|||++++++ ++++.++++.++| T Consensus 274 ~GK~~g~Dl~~gK~T~~~l~gle--------------------------------------------~a~~~~~~~~~~a 309 (335) T 2h8o_A 274 MGKATGKDAARGKGTLVALRGEA--------------------------------------------WAREKLQEQVAEA 309 (335) T ss_dssp ------------CCCHHHHHCHH--------------------------------------------HHHHHHHHHHHHH T ss_pred HCCCHHHHHHCCCCCHHHHHHHH--------------------------------------------HHHHHHHHHHHHH T ss_conf 69862268876974099999899--------------------------------------------9999999999999 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCH Q ss_conf 99986179994789999999999861123 Q T0584 316 IEALDAVDMPDRVRDRFTALADFVVVRKR 344 (352) Q Consensus 316 ~~~L~~l~~~~~~k~~L~~l~~~~~~R~k 344 (352) ++.|+.++.+ .+.|.++++|+++|.. T Consensus 310 ~~~l~~~~~~---~~~L~~l~~~i~~Rk~ 335 (335) T 2h8o_A 310 SELLAPYGEK---AAILIAAARFIAERKS 335 (335) T ss_dssp HHHTGGGGGG---GHHHHHHHHHHHC--- T ss_pred HHHHHHCCHH---HHHHHHHHHHHHHCCC T ss_conf 9987756746---8999999999987669 No 15 >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* Probab=100.00 E-value=0 Score=433.88 Aligned_cols=292 Identities=32% Similarity=0.438 Sum_probs=240.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 75789999999999999999986320668899888777777865466515872178999999999739997899999999 Q T0584 3 LDVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVA 82 (352) Q Consensus 3 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~Aaa 82 (352) |++++++...+..|+..|...+....|.+.. +.++.+|.+.+||||+||.|++++++++|++++.++++|++ T Consensus 1 m~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~--------l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~a 72 (304) T 3lsn_A 1 MSLTAYQASSQARVDAAMHTLFTAPSPELAR--------LYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACA 72 (304) T ss_dssp -CHHHHHHHHHHHHHHHHHGGGCCSSGGGHH--------HHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9867999999999999999860658963578--------99999988548802099999999999849998999999999 Q ss_pred HHHHHHHHHHCCCCC--CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHH---HHHHH Q ss_conf 999999997527877--8865555787210004642789989999999999997179900--7999999999---99987 Q T0584 83 VELVHNFSLLHDDLM--DGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVE--AGRATRRLTK---ASRSL 155 (352) Q Consensus 83 vEliH~asLiHDDi~--D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~--~~~~~~~~~~---~~~~~ 155 (352) +|++|+||||||||+ |+|++|||+||+|.+||++.||++||+|++.+++++....... ....+..+.. ..... T Consensus 73 iEllH~asLIHDDI~d~D~s~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (304) T 3lsn_A 73 VELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPA 152 (304) T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTT T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999996056446768666888756666660899999799999899986332332007999999889999998899 Q ss_pred HHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 7887788764-26899998999999986526899999999998639-999899999999889999999999887513784 Q T0584 156 IDGQAQDISY-EHRDRVSVEECLEMEGNKTGALLACASSIGAVLGG-ADERTADTLEKYGYHLGLAFQAVDDLLGIWGDP 233 (352) Q Consensus 156 ~~Gq~~dl~~-~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~ 233 (352) ..+|..+... ......+.++|++|+..|||+||.+||.+|++++| .+++..+.+.+||.++|+||||+||++|+++++ T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~g~~~a~~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~ 232 (304) T 3lsn_A 153 GMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT 232 (304) T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 99888888775013211688999999999999999999999998610145689999999999999999888733023897 Q ss_pred HHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 56167623233405677899999863896789999997531000344568989999999999864908999999999999 Q T0584 234 DATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHT 313 (352) Q Consensus 234 ~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~ 313 (352) +.+|||+|+||++||+|||++++++. +++.++.+.+ T Consensus 233 ~~~GK~~g~Dl~egK~Tlp~i~al~~--------------------------------------------a~~~~~~~~~ 268 (304) T 3lsn_A 233 ATLGKRQGADIARDKPTYPALLGLAA--------------------------------------------AKEYALELRD 268 (304) T ss_dssp HHC------------CCHHHHHCHHH--------------------------------------------HHHHHHHHHH T ss_pred HHHCCCHHHHHHCCCCCHHHHHHHHH--------------------------------------------HHHHHHHHHH T ss_conf 67398664487769756999999998--------------------------------------------8999999999 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCC Q ss_conf 999998617999478999999999986112320146 Q T0584 314 IAIEALDAVDMPDRVRDRFTALADFVVVRKREGHHH 349 (352) Q Consensus 314 ~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~k~~~~~ 349 (352) +|++.++.++. .++.|+++++|+++|....... T Consensus 269 ~a~~~l~~~~~---~~~~L~~l~~~i~~R~~~~~~~ 301 (304) T 3lsn_A 269 QALHALRPFDA---AAEPLRELARYIVERRSEGHHH 301 (304) T ss_dssp HHHHHTTTSCG---GGHHHHHHHHHHHC-------- T ss_pred HHHHHHHHCCC---CHHHHHHHHHHHHHHHCCCCCC T ss_conf 99986454780---1799999999999972589877 No 16 >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Probab=100.00 E-value=0 Score=435.28 Aligned_cols=256 Identities=25% Similarity=0.313 Sum_probs=227.1 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHH Q ss_conf 86546651587217899999999973999-78999999999999999975278778865555787210004642789989 Q T0584 44 AQGNPADGDGGKAVRPALAVLSAEVTGAA-PEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVG 122 (352) Q Consensus 44 ~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~-~~~~~~~AaavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~G 122 (352) +...|.+..||||+||.|++++++++|++ .+.++++|+|+|++|+||||||||||+|++|||+||+|.+||++.||++| T Consensus 30 ~~~~~~~~~~GKr~Rp~l~l~~~~~~g~~~~~~~~~~aaaiEllH~asLihDDi~D~s~~RRG~pt~~~~~g~~~ail~g 109 (299) T 1v4e_A 30 EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAG 109 (299) T ss_dssp HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCCCCHHHHHH T ss_conf 99985744678739999999999985999648799999999999999996188665577655564000011111001124 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999717990079999999999998778877887642689999899999998652689999999999863999 Q T0584 123 DALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGAD 202 (352) Q Consensus 123 d~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~ 202 (352) |+++++++..++..+.+. +...+++.+..++.||.+|+.+..+ ..+.++|++|+.+|||+||++||.+|++++|.+ T Consensus 110 d~l~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~~~~y~~~i~~KT~~lf~~~~~~ga~~~g~~ 185 (299) T 1v4e_A 110 DLVLVSAFHTVEEIGNNK---LRRAFLNVIGKMSEAELIEQLSRYK-PITKEEYLRIVEGKSGALFGLALQLPALLEGEL 185 (299) T ss_dssp HHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCC T ss_conf 678887765202233321---0000000111024677667762279-999999999987422023203333453112340 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 98999999998899999999998875137845616762323340567789999986389678999999753100034456 Q T0584 203 ERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFAN 282 (352) Q Consensus 203 ~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (352) .+ .+.+||+++|+||||+||++|++|++ .+|||.|+||++||+|||++++++..++..+.+. T Consensus 186 ~~---~l~~~g~~lG~aFQi~DDilD~~g~~-~~GK~~g~Dl~~gK~T~pii~ale~~~~~~~~~~-------------- 247 (299) T 1v4e_A 186 GE---DLYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFE-------------- 247 (299) T ss_dssp CH---HHHHHHHHHHHHHHHHHHHHHHTTCC-SCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHHH-------------- T ss_pred HH---HHHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHH-------------- T ss_conf 99---99999999999999977622567844-2089414334179647999999986979999987-------------- Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 89899999999998649089999999999999999986179 Q T0584 283 FSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVD 323 (352) Q Consensus 283 ~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~ 323 (352) .++++++++++.++|+++++++.++.+.++|......++ T Consensus 248 --~~d~~~~~~~i~~~g~i~~~~~~~~~~~~~a~~~~~~l~ 286 (299) T 1v4e_A 248 --NRDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLR 286 (299) T ss_dssp --TTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGC T ss_pred --HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf --789999999999838799999999999999887364788 No 17 >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Probab=100.00 E-value=0 Score=427.98 Aligned_cols=293 Identities=29% Similarity=0.348 Sum_probs=237.2 Q ss_pred CCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH Q ss_conf 9775789----999999999999999986320668899888777777865466515872178999999999739997899 Q T0584 1 MSLDVTA----LLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVG 76 (352) Q Consensus 1 m~~~~~~----~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~ 76 (352) |+|.-.. .++++...++..++..+...... .+.+.+...|.+.+||||+||+|++++++++|++.+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~--------~~~l~~~~~y~~~~gGKr~Rp~L~l~~~~~~~~~~~~~ 72 (313) T 3lom_A 1 MSLNSTQMNKQVIDKYTQRHELYLEQLLNEIIIP--------APQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVL 72 (313) T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--------CHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH T ss_conf 9987688889999999999999999987644789--------71799999988736865489999999999869798899 Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC--C---HHHHHHHHH Q ss_conf 99999999999999752787--7886555578721000464278998999999999999717990--0---799999999 Q T0584 77 VPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTV--E---AGRATRRLT 149 (352) Q Consensus 77 ~~~AaavEliH~asLiHDDi--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~--~---~~~~~~~~~ 149 (352) +++|+++|++|+|||||||| ||+|++|||+||+|.+||++.||++||+|++.+|+.++....+ . ..++...++ T Consensus 73 ~~~AaaiEllH~asLIhDDI~~~D~s~~RRG~pt~h~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 152 (313) T 3lom_A 73 DIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLV 152 (313) T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999999999999998884301398877998456440584999998149999999999973467786999999999999 Q ss_pred H--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9--99987788778876426899998999999986526899999999-99863999989999999988999999999988 Q T0584 150 K--ASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSI-GAVLGGADERTADTLEKYGYHLGLAFQAVDDL 226 (352) Q Consensus 150 ~--~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~-ga~lag~~~~~~~~l~~~G~~lG~afQi~DDi 226 (352) . .+..++.||.+|+.+..+...++++|++|+++|||+||.++|.+ |+++++.+++..+.+.+||+++|+||||+||+ T Consensus 153 ~~~~~~~~~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~lG~afQi~DDi 232 (313) T 3lom_A 153 NASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDY 232 (313) T ss_dssp HHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99889999840899998740689999999999999899999999999999838999999999999999899999999999 Q ss_pred HHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 75137845616762323340567789999986389678999999753100034456898999999999986490899999 Q T0584 227 LGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTAD 306 (352) Q Consensus 227 lD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~ 306 (352) +|++++++.+|||+|+||++||+|||++++++. +.+ T Consensus 233 lD~~~d~~~~GK~~g~Dl~~gK~T~~~l~a~~~--------------------------------------------a~~ 268 (313) T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKTTFATLFNKQQ--------------------------------------------LEE 268 (313) T ss_dssp HHHHCC---------------CCCHHHHSCHHH--------------------------------------------HHH T ss_pred HHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHH--------------------------------------------HHH T ss_conf 873279998789710387759860999999998--------------------------------------------699 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCC Q ss_conf 999999999999861799947899999999998611232014 Q T0584 307 EARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVRKREGHH 348 (352) Q Consensus 307 ~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~k~~~~ 348 (352) ..+.+.+++++.++.++ +....|.++++++.+|...... T Consensus 269 ~~~~~~~~~l~~l~~~~---~~~~~l~el~~~i~~R~~l~~~ 307 (313) T 3lom_A 269 EIAVHYQIAMDSLRLFG---SKAAALIELTKQLQNRSNLSEG 307 (313) T ss_dssp HHHHHHHHHHHTTTTTG---GGGHHHHHHHHHHHHHHHTTC- T ss_pred HHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHCCCHHHH T ss_conf 99999999999766288---6479999999999865076654 No 18 >2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A* Probab=100.00 E-value=0 Score=435.49 Aligned_cols=318 Identities=17% Similarity=0.150 Sum_probs=250.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHH Q ss_conf 899999999999999999863206688998887777778654665158721789999999997399----9789999999 Q T0584 6 TALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGA----APEVGVPGAV 81 (352) Q Consensus 6 ~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~----~~~~~~~~Aa 81 (352) ....++.+..+...+. . .|...++..+...|+.....|.+ +||||+||+||+++++++++ +++.++++|+ T Consensus 29 ~~~~~~~~~~~~~~l~----~-~~l~~~~~~~~~~~~~~~~~Y~~-~GGKr~Rp~l~~~~~~~~~~~~~~~~~~~~~la~ 102 (368) T 2her_A 29 INYYDKFKVIVYNVLK----K-LPLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGW 102 (368) T ss_dssp GGTHHHHHHHHHTTCC----C-CTTSCCTTTTHHHHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 9999999999999861----2-45543567999999999973678-8701240699999999837877789899999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999999997527877886555578721000464278998999999999999717----990079999999999998778 Q T0584 82 AVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLEL----GTVEAGRATRRLTKASRSLID 157 (352) Q Consensus 82 avEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~----~~~~~~~~~~~~~~~~~~~~~ 157 (352) +|||||+||||||||||+|++|||+||+|.+||++.|||+||+|++.++.++.++ +++...++++.+++++..++. T Consensus 103 avEllH~asLihDDI~D~s~~RRG~pt~h~~~G~~~AI~~gd~L~~~a~~~l~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (368) T 2her_A 103 VVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVL 182 (368) T ss_dssp HHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999851467999889980565245416588678899999999998731356819999999998876666642 Q ss_pred HHHHHHHHCC--CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 8778876426--89999899999998652689-9999999998639--99989999999988999999999988751378 Q T0584 158 GQAQDISYEH--RDRVSVEECLEMEGNKTGAL-LACASSIGAVLGG--ADERTADTLEKYGYHLGLAFQAVDDLLGIWGD 232 (352) Q Consensus 158 Gq~~dl~~~~--~~~~s~~~y~~~~~~KTa~L-f~~a~~~ga~lag--~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~ 232 (352) ||.+|+.+.. +.+.+.++|++|+.+|||+| |.+||.+|++++| .+++..+.+.+||.++|+||||+||++|+++ T Consensus 183 GQ~lDl~~~~~~~~~~~~e~Yl~ii~~KTa~l~f~~~~~~g~~lag~~~~~~~~~~l~~~g~~lGiaFQI~DDilD~~~- 261 (368) T 2her_A 183 GQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF- 261 (368) T ss_dssp HHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS- T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_conf 0999987241156785699999999974445688889999999715420226899999999999999994898988755- Q ss_pred HHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 45616762323340567789999986389678999999753100034456898999999999986490899999999999 Q T0584 233 PDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQH 312 (352) Q Consensus 233 ~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~ 312 (352) |||.|+||++||+|||+++|++.+++++++.+.-...+ ..+.++++.+ ..+..+.+.+.++... T Consensus 262 ----gK~~g~Di~egK~Tlpvi~ale~~~~~~k~~l~~~~~k---------~~~~ik~l~~---~l~i~~~~~~y~~~~~ 325 (368) T 2her_A 262 ----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGK---------NSSLVKDCYN---LLKINEHYLEYQRNAL 325 (368) T ss_dssp ----CCSSSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTT---------CHHHHHHHHH---HTTHHHHHHHHHHHHH T ss_pred ----CCCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHCC---------CHHHHHHHHH---HHHHHHHHHHHHHHHH T ss_conf ----99888827459825999999995999999999998678---------7799999999---9826899999999999 Q ss_pred HHHHHHHHHCCCCHHH----HHHHHHHHHHHHHCCHHCC Q ss_conf 9999998617999478----9999999999861123201 Q T0584 313 TIAIEALDAVDMPDRV----RDRFTALADFVVVRKREGH 347 (352) Q Consensus 313 ~~A~~~L~~l~~~~~~----k~~L~~l~~~~~~R~k~~~ 347 (352) +++.+.++.+|. +.. +..|..+++++++|..... T Consensus 326 ~~~~~~i~~l~~-~~~~~~l~~ll~kI~~~l~~r~sn~~ 363 (368) T 2her_A 326 DYLIKLVKDITD-DSLQKVFIHLIHQISELITNSRSNAD 363 (368) T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHHHHCC------ T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999986654-12799999999999999999640687 No 19 >3m9u_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative; 1.77A {Lactobacillus brevis} Probab=100.00 E-value=0 Score=423.46 Aligned_cols=287 Identities=29% Similarity=0.366 Sum_probs=235.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHH Q ss_conf 78999999999999999998632066889988877777786546651587217899999999973999--7899999999 Q T0584 5 VTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAA--PEVGVPGAVA 82 (352) Q Consensus 5 ~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~--~~~~~~~Aaa 82 (352) +..+.++++..|+..|...+....+. ..+.+.++|.+.+||||+||.|++++++++|++ ++.++++|+| T Consensus 8 l~~f~~~~~~~i~~~l~~~~~~~~~~---------~~l~~a~~y~l~~GGKrlRp~l~~~~~~~~g~~~~~~~~~~~A~a 78 (309) T 3m9u_A 8 LIAFEDQWVPALNAPLKQAILADSQD---------AQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMA 78 (309) T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTCSC---------HHHHHHHHHHHTSCCCCHHHHHHHHHHHTTTCCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC---------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999999999999999875435995---------789999998870784418799999999980999872889999999 Q ss_pred HHHHHHHHHHCCCC--CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHH--HHH Q ss_conf 99999999752787--78865555787210004642789989999999999997179900799--9999999999--877 Q T0584 83 VELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGR--ATRRLTKASR--SLI 156 (352) Q Consensus 83 vEliH~asLiHDDi--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~--~~~~~~~~~~--~~~ 156 (352) +||+|+|||||||| ||+|++|||+||+|.+||++.||++||+|++.+++++++.+.+.... ....+..+.. .++ T Consensus 79 iEllH~asLIHDDI~~~D~s~~RRG~pt~h~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (309) T 3m9u_A 79 LELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMV 158 (309) T ss_dssp HHHHHHHHHHHHHSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999998485402777665567671235241999988767777899999850014578889999999986588987 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 88778876426899998999999986526899999999998639999899999999889999999999887513784561 Q T0584 157 DGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDAT 236 (352) Q Consensus 157 ~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~ 236 (352) .||..|+.. .+...+.++|+.|+++|||+||+++|.+|++++|.+++..+.+.+||.++|+||||+||++|++++++.+ T Consensus 159 ~~~~~d~~~-~~~~~~~~~y~~i~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~gd~~~~ 237 (309) T 3m9u_A 159 AGQAKDIQS-EHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEM 237 (309) T ss_dssp HHHHHHHHT-TTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHSCC---- T ss_pred HCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 321121222-3210059999999999889998999989999828727789999998887477898699987703897886 Q ss_pred CCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH Q ss_conf 67623233405677899999863896789999997531000344568989999999999864908999999999999999 Q T0584 237 GKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAI 316 (352) Q Consensus 237 GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~ 316 (352) |||+|+||++||+|||++++++. +++.+..+.++++ T Consensus 238 GK~~g~Dl~egK~Tlp~i~al~~--------------------------------------------a~~~~~~~~~~a~ 273 (309) T 3m9u_A 238 GKATQKDADEAKNTYPGKLGLIG--------------------------------------------ANQALIDTIHSGQ 273 (309) T ss_dssp --------CCTTSSHHHHHHHHH--------------------------------------------HHHHHHHHHHHHH T ss_pred CCCCCHHHHCCCCCHHHHHHHHH--------------------------------------------HHHHHHHHHHHHH T ss_conf 99811266729762999999999--------------------------------------------9999999999999 Q ss_pred HHHHHCCCCHHHHHHHHHHHHH-HHHCCHHC Q ss_conf 9986179994789999999999-86112320 Q T0584 317 EALDAVDMPDRVRDRFTALADF-VVVRKREG 346 (352) Q Consensus 317 ~~L~~l~~~~~~k~~L~~l~~~-~~~R~k~~ 346 (352) +.|+.+|. +..++.|..++++ +++|.... T Consensus 274 ~~l~~~~~-~~~~~~L~~~~~~~~~er~~e~ 303 (309) T 3m9u_A 274 AALQGLPT-STQRDDLAAFFSYFDTERVNEG 303 (309) T ss_dssp HHHTTSCC-CHHHHHHHGGGGGSCTTTTC-- T ss_pred HHHHHCCC-CHHHHHHHHHHHHHHHHHHHCC T ss_conf 99985899-7589999999999999998623 No 20 >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Probab=100.00 E-value=0 Score=421.82 Aligned_cols=262 Identities=32% Similarity=0.490 Sum_probs=226.0 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCEECCCCCHHHH Q ss_conf 77865466515872178999999999739997899999999999999997527877--8865555787210004642789 Q T0584 42 IDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLM--DGDEQRRHRDTVWKVHGPAQAI 119 (352) Q Consensus 42 ~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~--D~s~~RRG~pt~~~~~G~~~Ai 119 (352) +.+...|.+.+||||+||.|++++++++|++.+.++++|+++||+|+||||||||+ |++..|||+||+|.+||+..|+ T Consensus 30 l~~~~~y~l~~gGKr~Rp~L~l~~~~~~~~~~~~~~~~A~aiEllH~asLIHDDI~d~D~~~~RRg~p~~~~~~g~~~Ai 109 (301) T 1rtr_A 30 LEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAI 109 (301) T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHH T ss_conf 99999978339934687999999999849991788999999999999999961310132101201340578986321677 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHH---HHHHHH--HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 989999999999997179900799---999999--999987788778876426899998999999986526899999999 Q T0584 120 LVGDALFALANEVLLELGTVEAGR---ATRRLT--KASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSI 194 (352) Q Consensus 120 l~Gd~l~~~a~~~l~~~~~~~~~~---~~~~~~--~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ 194 (352) ++||++++.++.+++......... +...+. .....++.||.+|+.+... ..+.+.|+.|+++|||+||++||.+ T Consensus 110 l~Gd~l~~~a~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~GQ~~Dl~~~~~-~~~~~~y~~i~~~KT~~l~~~~~~~ 188 (301) T 1rtr_A 110 LAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMS 188 (301) T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 706620789999998468750378888999999986589998618999971267-8999999999976231143146776 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99863999989999999988999999999988751378456167623233405677899999863896789999997531 Q T0584 195 GAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTAD 274 (352) Q Consensus 195 ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~ 274 (352) |++++|++++..+.+.+||.++|+||||+||++|++|+++.+|||.|+||++||+|||++++++. T Consensus 189 ga~~~~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~~~~~a~~~--------------- 253 (301) T 1rtr_A 189 AADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDG--------------- 253 (301) T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHH--------------- T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCHHHHHHHHHH--------------- T ss_conf 42002301676689999999899999888786653277776299800076669831999999999--------------- Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCC Q ss_conf 000344568989999999999864908999999999999999998617999478999999999986112320146 Q T0584 275 AKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRDRFTALADFVVVRKREGHHH 349 (352) Q Consensus 275 ~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~k~~~~~ 349 (352) +++.+..+.+++.+.|..++. ....+.|.++++++++|....... T Consensus 254 -----------------------------a~~~~~~~~~~a~~~l~~~~~-~~~~~~l~el~d~i~~R~~~~~~~ 298 (301) T 1rtr_A 254 -----------------------------AEDKLTYHRDAAVDELTQIDE-QFNTKHLLEIVDLFYSRDHKGHHH 298 (301) T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTSCT-TSCCHHHHHHHHHHHCC------- T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCCCCC T ss_conf -----------------------------999999999999999987868-466999999999999563689777 No 21 >2ftz_A Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8} Probab=100.00 E-value=0 Score=410.47 Aligned_cols=266 Identities=27% Similarity=0.336 Sum_probs=231.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999998632066889988877777786546651587217899999999973999789999999999999999752 Q T0584 14 TLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLH 93 (352) Q Consensus 14 ~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiH 93 (352) +.|+..|++.+....+. ..++..+|.+.+||||+||.|++++++++|++.+.++++|+|+|++|+||||| T Consensus 16 e~v~~~i~~~~~~~~~~----------~~~~a~~y~~~~GGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEllH~asLIH 85 (284) T 2ftz_A 16 EXVEERIREILRPGWDL----------LTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIH 85 (284) T ss_dssp HHHHHHHHHHHSCSSCC----------HHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCH----------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999860458864----------79999998880699718799999999980988789999999999999999997 Q ss_pred CCC--CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC Q ss_conf 787--788655557872100046427899899999999999971799007999999999999877887788764268-99 Q T0584 94 DDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHR-DR 170 (352) Q Consensus 94 DDi--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~-~~ 170 (352) ||| +|+|.+|||+||+|++||++.||++||+|++++|++++.++++ ..+..+++....++.||..|..+... .. T Consensus 86 DDI~d~D~~~~RRg~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (284) T 2ftz_A 86 DDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNS---XIFEEFSETAYXLLLGEAMDVEFERRXME 162 (284) T ss_dssp HHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHHHHHHHHHHHSCCC T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 798535686334898550321103889997189999888744343247---89999999875567899999998602322 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCC Q ss_conf 99899999998652689999999999863999989999999988999999999988751378456167623233405677 Q T0584 171 VSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKS 250 (352) Q Consensus 171 ~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~T 250 (352) .+.+.|..|+.+|||+||++||.+|++++|.++ +.+..||+++|+||||+||++|++|+++.+|||+|+|+ ||.| T Consensus 163 ~~~~~~~~~~~~KTa~lf~~~~~~gail~g~~~---~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~~g~D~--~k~T 237 (284) T 2ftz_A 163 VSQEMVERMYAFXTGALFAFCFSAPFILXGXDH---TXMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDT--EXVT 237 (284) T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------C T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHCCHHHHHCCCCHHHHCCCCCCCC--CCCC T ss_conf 119999888663288899879999999819978---89998632203553121543102589899697968789--9865 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 89999986389678999999753100034456898999999999986490899999999999999999861799947899 Q T0584 251 LPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDMPDRVRD 330 (352) Q Consensus 251 lpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~~A~~~L~~l~~~~~~k~ 330 (352) +|+++++ +.+++..+.+.+++++.++..+ ..+.++ T Consensus 238 l~~~~~~--------------------------------------------~~a~~~~~~~~~~~l~~l~~~~-~~~~~~ 272 (284) T 2ftz_A 238 LVXXVGI--------------------------------------------QXAREMADXYYEEVLXGIESEG-LFRTLF 272 (284) T ss_dssp HHHHHCH--------------------------------------------HHHHHHHHHHHHHHHHHHHHTT-CHHHHH T ss_pred HHHHHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHCC-CHHHHH T ss_conf 6999999--------------------------------------------9999999999999999988679-878999 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999998611 Q T0584 331 RFTALADFVVVR 342 (352) Q Consensus 331 ~L~~l~~~~~~R 342 (352) .|.++++|+++| T Consensus 273 ~L~el~~~i~~R 284 (284) T 2ftz_A 273 LLXELXQMVEER 284 (284) T ss_dssp HHHHHHHHHHTC T ss_pred HHHHHHHHHHCC T ss_conf 999999999759 No 22 >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Probab=100.00 E-value=0 Score=417.69 Aligned_cols=244 Identities=18% Similarity=0.211 Sum_probs=213.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 775789999999999999999986320-6688998887777778654665158721789999999997399978999999 Q T0584 2 SLDVTALLERGRTLATPVLRAAVDRLA-PPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGA 80 (352) Q Consensus 2 ~~~~~~~l~~~~~~v~~~l~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~A 80 (352) -|++...+.+.+..++..|++.+.... +.+.+ ...|. .+||||+||.|++++++++|++.+.++++| T Consensus 8 ~m~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~-----------~~~y~-~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A 75 (289) T 2azj_A 8 HMSIIEFWLEAKATIDRLIEQFLNSNRDWDLVD-----------ISSYI-LKDGKRFRGTLNMFFTVALGGDIKDSYGGA 75 (289) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHCSCTTHHH-----------HHHHH-HSCCCCHHHHHHHHHHHHTTCCGGGGHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-----------HHHHH-HCCCCCHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 515999999999999999999853379865999-----------99867-658772999999999998299907778898 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999997527877886555578721000464278998999999999999717990079999999999998778877 Q T0584 81 VAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQA 160 (352) Q Consensus 81 aavEliH~asLiHDDi~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~ 160 (352) +++||+|+||||||||+|+|++|||+||+|.+||+..||++||+|++.++++++....+ .++..+++++..++.||. T Consensus 76 ~avEllH~asLihDDi~D~~~~RRG~pt~~~~~G~~~Ail~Gd~L~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~Gq~ 152 (289) T 2azj_A 76 LAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGD---DALNTSIELWKDTSVGAL 152 (289) T ss_dssp HHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHH T ss_conf 99999999999548832131030210233101221277888887775412543211210---247888866467899999 Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHH Q ss_conf 8876426899998999999986526899999999998639999899999999889999999999887513784----561 Q T0584 161 QDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDP----DAT 236 (352) Q Consensus 161 ~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~----~~~ 236 (352) +|+. +.++|++|+++|||+||++||.+|+++++.+ +..+.+.+||.++|++|||+||++|+++++ +.+ T Consensus 153 ~d~~-------~~~~y~~~i~~KTg~Lf~~~~~~gai~~~~~-~~~~~l~~~g~~lG~afQi~DD~lD~~~~~~~~~~~~ 224 (289) T 2azj_A 153 RDMY-------DNSDYIRTIELKTGSLFKLSTVLSAYASKHY-NTKQQMLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGS 224 (289) T ss_dssp HTTT-------TTSCHHHHHHHHTHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCTT T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHCCCC T ss_conf 9866-------4999999999875337775431000112210-0257899998633289997998637347712201222 Q ss_pred CCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 67623233405677899999863896789999 Q T0584 237 GKQTWSDLRQRKKSLPVVAALAAGGAASERLG 268 (352) Q Consensus 237 GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~ 268 (352) |||.|+|+++||.|+|++++++..+...+++. T Consensus 225 gK~~g~Dl~egK~T~~~~~~~~~~~~~~~~~l 256 (289) T 2azj_A 225 AKQLFKYYREGKLEEYVRSVYLEYKQKYDELI 256 (289) T ss_dssp GGGGHHHHTTTCHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHCCHHHCCCHHHHHHHHHHHCCHHHHHHH T ss_conf 50103407528889999999997889999999 No 23 >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, isoprene biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Probab=100.00 E-value=0 Score=397.29 Aligned_cols=284 Identities=34% Similarity=0.467 Sum_probs=233.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 757899999999999999999863206-6889988877777786546651587217899999999973999789999999 Q T0584 3 LDVTALLERGRTLATPVLRAAVDRLAP-PMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAV 81 (352) Q Consensus 3 ~~~~~~l~~~~~~v~~~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~Aa 81 (352) |++...|.+.+..|+..|.+.++..++ .+. +..+|.+ +||||+||.||+++++++|++.+.++++|+ T Consensus 1 m~~~~~l~~~~~~ie~~l~~~~~~~~~~~l~-----------~~~~y~~-~gGKrlRp~l~~~~~~~~g~~~~~~~~~A~ 68 (297) T 3m0g_A 1 MSLSERLKEVQDAVETAMAAAIGRLPAGDLR-----------DAMAYAA-QGGKRLRAFLAIESAAIHGISMAQAMPAAL 68 (297) T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTSCCSHHH-----------HHHHHHH-SCSCCHHHHHHHHHHHHTTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-----------HHHHHHH-CCCCCHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 9879999999999999999875538808899-----------9998574-685438899999999982988889999999 Q ss_pred HHHHHHHHHHHCCCCC--CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHH----HHH Q ss_conf 9999999997527877--88655557872100046427899899999999999971799007-9999999999----998 Q T0584 82 AVELVHNFSLLHDDLM--DGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEA-GRATRRLTKA----SRS 154 (352) Q Consensus 82 avEliH~asLiHDDi~--D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~-~~~~~~~~~~----~~~ 154 (352) |+||+|+||||||||| |+|.+|||+||+|.+||++.|||+||++++.+++++++...... .++....... ... T Consensus 69 aiEllH~asLIhDDI~d~D~s~~RRg~~s~~~~~G~~~AIl~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (297) T 3m0g_A 69 AVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEG 148 (297) T ss_dssp HHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTT T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999998377414576510069863487829734345343887767999861112307889999999999999999 Q ss_pred HHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 7788778876426-899998999999986526899999999998639999899999999889999999999887513784 Q T0584 155 LIDGQAQDISYEH-RDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDP 233 (352) Q Consensus 155 ~~~Gq~~dl~~~~-~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~ 233 (352) ++.||..++.+.. ....+.+.|++|+..|||+||..+|.++++++|.++. .+..||.++|+||||+||++|+++++ T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~~~~~~~~~~~---~~~~~g~~lG~afQi~DD~ld~~g~~ 225 (297) T 3m0g_A 149 MVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNE 225 (297) T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC------ T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 996579999987415516799999988999988778899999987399789---99998888888999999988741675 Q ss_pred HHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 56167623233405677899999863896789999997531000344568989999999999864908999999999999 Q T0584 234 DATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHT 313 (352) Q Consensus 234 ~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~~~~ 313 (352) +.+||+.|+||++||+|||++++++. +++.++.+.+ T Consensus 226 ~~~GK~~g~Di~egK~Tl~~i~ale~--------------------------------------------a~~~~~~l~~ 261 (297) T 3m0g_A 226 EAAGKRLGKDAEAHKATFVSLLGLAG--------------------------------------------AKSRAADLVA 261 (297) T ss_dssp ---------------CCHHHHHCSSH--------------------------------------------HHHHHHHHHH T ss_pred HHHCCCHHHHHHCCCCCHHHHHHHHH--------------------------------------------HHHHHHHHHH T ss_conf 54397675598769965999999999--------------------------------------------9999999999 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCC Q ss_conf 99999861799947899999999998611232014 Q T0584 314 IAIEALDAVDMPDRVRDRFTALADFVVVRKREGHH 348 (352) Q Consensus 314 ~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~k~~~~ 348 (352) +|.+.++.++. ..+.|+++++|+++|...... T Consensus 262 ~a~~~l~~~~~---~~~~L~~l~~~ii~R~k~~~~ 293 (297) T 3m0g_A 262 EAEAALAPYGE---AASTLRACARYVIERDKEGHH 293 (297) T ss_dssp HHHHHTGGGGG---GGHHHHHHHHHHTC------- T ss_pred HHHHHHHHCCH---HHHHHHHHHHHHHHHCCCCCC T ss_conf 99997664775---689999999999996268877 No 24 >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* Probab=100.00 E-value=0 Score=389.50 Aligned_cols=273 Identities=33% Similarity=0.454 Sum_probs=225.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 97757899999999999999999863206688998887777778654665158721789999999997399978999999 Q T0584 1 MSLDVTALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGA 80 (352) Q Consensus 1 m~~~~~~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~A 80 (352) |-.|+.+++.+....|+..|++.+....|. .+.++.+|.+.+||||+||.|++++++++|++++.++++| T Consensus 9 ~~~~~~s~~~~~~~~v~~~l~~~~~~~~p~----------~l~~~~~y~l~~GGKrlRp~l~l~~~~~~g~~~~~~~~~a 78 (293) T 2j1p_A 9 HHTDPISYIIRKADSVNKALDSAVPLREPL----------KIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAA 78 (293) T ss_dssp ----CHHHHHHHHHHHHHHHHHHSCSCSSH----------HHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 558999999999999999998754767966----------8999999886188644999999999998299878999999 Q ss_pred HHHHHHHHHHHHCCCCC--CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--HH---HHHHHHHHHHH Q ss_conf 99999999997527877--8865555787210004642789989999999999997179900--79---99999999999 Q T0584 81 VAVELVHNFSLLHDDLM--DGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVE--AG---RATRRLTKASR 153 (352) Q Consensus 81 aavEliH~asLiHDDi~--D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~--~~---~~~~~~~~~~~ 153 (352) +|+|++|++|||||||+ |+|++|||+||+|.+||+..||++||++++.++.+++.+.... .. .++..+++.+. T Consensus 79 aaiEllH~asLIHDDI~d~D~s~~RRG~pt~h~~~g~~~Ail~gd~l~~~a~~ll~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (293) T 2j1p_A 79 CAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIG 158 (293) T ss_dssp HHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999860774467887778960066773214444320279889999987612454678999999999999999 Q ss_pred --HHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf --877887788764268--9999899999998652689999999999863999989999999988999999999988751 Q T0584 154 --SLIDGQAQDISYEHR--DRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGI 229 (352) Q Consensus 154 --~~~~Gq~~dl~~~~~--~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~ 229 (352) .++.||..++.+... ...+.+.|++|+.+|||+||+++|.+|++++|++++.++.+.+||.++|+||||+||++|+ T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~s~e~~~~i~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~G~~lG~AFQi~DD~LD~ 238 (293) T 2j1p_A 159 TEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDV 238 (293) T ss_dssp TTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999888888876520135577999999999988999999999989873999999999998982647899988988772 Q ss_pred CCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 37845616762323340567789999986389678999999753100034456898999999999986490899999999 Q T0584 230 WGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEAR 309 (352) Q Consensus 230 ~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~ 309 (352) +++ +|.|+|++++++ .+++.++ T Consensus 239 ~gd--------------~K~T~p~l~gl~--------------------------------------------~~~~~~~ 260 (293) T 2j1p_A 239 TKS--------------SKLTYPKLMGLE--------------------------------------------KSREFAE 260 (293) T ss_dssp HC----------------CCCHHHHHHHH--------------------------------------------HHHHHHH T ss_pred CCC--------------CCHHHHHHHHHH--------------------------------------------HHHHHHH T ss_conf 389--------------504788994189--------------------------------------------8999999 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 9999999998617999478999999999986112 Q T0584 310 RQHTIAIEALDAVDMPDRVRDRFTALADFVVVRK 343 (352) Q Consensus 310 ~~~~~A~~~L~~l~~~~~~k~~L~~l~~~~~~R~ 343 (352) .+.++|++.|..++ ++.++.|.++++|+++|. T Consensus 261 ~l~~~a~~~l~~~~--~~~~~~L~~l~~~i~~R~ 292 (293) T 2j1p_A 261 KLNTEARDQLLGFD--SDKVAPLLALANYIANRQ 292 (293) T ss_dssp HHHHHHHHHTTTSC--TTTTHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCC T ss_conf 99999999876379--378999999999998768 No 25 >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* Probab=100.00 E-value=0 Score=389.60 Aligned_cols=243 Identities=19% Similarity=0.195 Sum_probs=201.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 99999999999999999863206688998887777778654665158721789999999997399978999999999999 Q T0584 7 ALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVAVELV 86 (352) Q Consensus 7 ~~l~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~~AaavEli 86 (352) .++.+.+..|+..|++.+....|. .+.++.+|.+.+||||+||.||+++++++|++++.++++|+++|++ T Consensus 3 ~y~~~i~~~i~~~L~~~~~~~~~~----------~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEll 72 (274) T 3kra_B 3 PYWAAIEADIERYLKKSITIRPPE----------TVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLV 72 (274) T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSH----------HHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 899999999999999765657977----------8999999998468755899999999998098999998877899999 Q ss_pred HHHHHHCCCCCCCC-CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHHH---HHHHHHHHHH Q ss_conf 99997527877886-5555787210004642789989999999999997179900----79999999---9999987788 Q T0584 87 HNFSLLHDDLMDGD-EQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVE----AGRATRRL---TKASRSLIDG 158 (352) Q Consensus 87 H~asLiHDDi~D~s-~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~----~~~~~~~~---~~~~~~~~~G 158 (352) |+||||||||+|+| ++|||+||+|.+||++.||++||+|++++++.++.+..+. ..++++.+ +++....+.| T Consensus 73 H~asLIHDDI~ddd~~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 152 (274) T 3kra_B 73 HAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMI 152 (274) T ss_dssp HHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHH T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999975860379642379987431118189999889999999999986578521004999999999999999985126 Q ss_pred HHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHH Q ss_conf 77887642-6899998999999986526899999999998639999899999999889999---------9999998875 Q T0584 159 QAQDISYE-HRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGL---------AFQAVDDLLG 228 (352) Q Consensus 159 q~~dl~~~-~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~---------afQi~DDilD 228 (352) |..+..+. .+...+++.|+.|+++|||+||++||.+|++++|++++.++.+.+||+++|+ ||||+||++| T Consensus 153 ~~~~~~~~~~~~~~~~~~y~~i~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~fG~~lGi~~q~~~~~~afQi~DD~ld 232 (274) T 3kra_B 153 SGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDENII 232 (274) T ss_dssp HHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCHHHHH T ss_conf 88999988417999899999999998899999999999998194999999999999982984101344311320044662 Q ss_pred HCCCH---HHHCCCHHHH--HHCCCCCHHHHHHHHC Q ss_conf 13784---5616762323--3405677899999863 Q T0584 229 IWGDP---DATGKQTWSD--LRQRKKSLPVVAALAA 259 (352) Q Consensus 229 ~~~~~---~~~GK~~g~D--l~~gK~Tlpii~al~~ 259 (352) +++++ +.+||+.|+| +.+||.|||++||... T Consensus 233 ~~~~~~~~~~lgK~~G~d~dl~~gk~T~P~l~a~~~ 268 (274) T 3kra_B 233 GKLKELALEELGGFHGKNAELMSSLVAEPSLYAAHH 268 (274) T ss_dssp HHHHHHHHHHHTTSCSSHHHHTGGGGC--------- T ss_pred CCCCCCCHHHHCCCCCCCHHHHCCCHHHHHHHHHCC T ss_conf 047721399828987761877579603999987453 No 26 >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} Probab=100.00 E-value=0 Score=373.52 Aligned_cols=246 Identities=26% Similarity=0.346 Sum_probs=198.5 Q ss_pred CCCCHH--HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---- Q ss_conf 977578--999999999999999998---63206688998887777778654665158721789999999997399---- Q T0584 1 MSLDVT--ALLERGRTLATPVLRAAV---DRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGA---- 71 (352) Q Consensus 1 m~~~~~--~~l~~~~~~v~~~l~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr~Rp~L~ll~~~~~g~---- 71 (352) |+++-+ .+.+...+.++..|+... ....|.+. +...|.+.+||||+||.||++++.++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~-----------~~~~~~~~~GGKr~Rp~l~~~~~~~l~g~~~~ 69 (311) T 3llw_A 1 MSLSSPNLSFYYNECERFESFLKNHHLHLESFHPYLE-----------KAFFEMVLNGGKRFRPKLFLAVLCALVGQKDY 69 (311) T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCCCCCCSSCSSHH-----------HHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 9989864788999999999999972553157875899-----------99999985898514589999999996388655 Q ss_pred --CHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HH Q ss_conf --9789999999999999999752787--78865555787210004642789989999999999997179900799--99 Q T0584 72 --APEVGVPGAVAVELVHNFSLLHDDL--MDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGR--AT 145 (352) Q Consensus 72 --~~~~~~~~AaavEliH~asLiHDDi--~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~--~~ 145 (352) +.+.++++|+|+|++|+|||||||| ||+|++|||+||+|..||+..|+++||++++.++.+++......... +. T Consensus 70 ~~~~~~~~~~A~aiEllH~asLIhDDI~~mD~s~~RRG~pt~h~~~g~~~ai~~gd~l~~~~~~ll~~~~~~~~~~~~~~ 149 (311) T 3llw_A 70 SNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELI 149 (311) T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 75579999999999999999999727511356646899877655421278997022888778998873130378999999 Q ss_pred HHHHHH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999--99877887788764268999989999999865268999999999986399-998999999998899999999 Q T0584 146 RRLTKA--SRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGA-DERTADTLEKYGYHLGLAFQA 222 (352) Q Consensus 146 ~~~~~~--~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~-~~~~~~~l~~~G~~lG~afQi 222 (352) ..+... ...++.||..+.... ....++++|..|+..|||+||.++|.+|+++++. +++..+.+.+||.++|+|||| T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~Kt~~l~~~~~~~~~~~a~~~~~~~~~~l~~~g~~lGiaFQi 228 (311) T 3llw_A 150 KILSANGGIKGMILGQALDCYFE-NTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQV 228 (311) T ss_dssp HHHHHHHSTTTHHHHHHHHHHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999988888889999887512-57899999999998688899899999999886577378999999999988999884 Q ss_pred HHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCC Q ss_conf 99887513784561676232334056778999998638 Q T0584 223 VDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAG 260 (352) Q Consensus 223 ~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~ 260 (352) +||++|++|+++.+|||.+.| +||.|||++++++++ T Consensus 229 ~DDilD~~gd~~~~GK~~~~D--~gK~T~~~i~~le~a 264 (311) T 3llw_A 229 LDDIIDVTQDEEESGKTTHLD--SAKNSFVNLLGLERA 264 (311) T ss_dssp HHHHHHHHC---------------CCSCHHHHHCHHHH T ss_pred HHHHHHCCCCHHHHCCCCCCC--CCCHHHHHHHHHHHH T ss_conf 598775348879868886877--872789999999982 No 27 >3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Probab=97.37 E-value=0.0052 Score=34.72 Aligned_cols=199 Identities=14% Similarity=0.072 Sum_probs=99.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 3206688998887777778654665158721---7899999999973999789999999999999999752787788655 Q T0584 26 RLAPPMDTVAAYHFGWIDAQGNPADGDGGKA---VRPALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQ 102 (352) Q Consensus 26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~gGKr---~Rp~L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~D~s~~ 102 (352) ++.|...++......|+....-. ..+..| .+.-+..+++..+-.-....+.+ +..++. ..-+.||+.|++.. T Consensus 54 ~~hP~~~ev~~~~~~W~~~~gl~--~~~~~~~r~~~~~~~~l~a~~~P~a~~e~L~l--~a~~~~-wlF~~DD~~D~~~~ 128 (382) T 3kb9_A 54 QLHPYWPKLQETTRTWLLEKRLM--PADKVEEYADGLCYTDLMAGYYLGAPDEVLQA--IADYSA-WFFVWDDRHDRDIV 128 (382) T ss_dssp CCCTTHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHH--HHHHHH-HHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHH--HHHHHH-HHHHHHHCCCCCCC T ss_conf 34848999999999999975899--98899999984499988867289999999999--999999-99999740568777 Q ss_pred CCCCCCEECCCCCHH-HHHH--HH-----HHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCC Q ss_conf 557872100046427-8998--99-----99999999-99717990079999999999998778877887642689-999 Q T0584 103 RRHRDTVWKVHGPAQ-AILV--GD-----ALFALANE-VLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRD-RVS 172 (352) Q Consensus 103 RRG~pt~~~~~G~~~-Ail~--Gd-----~l~~~a~~-~l~~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~s 172 (352) + +.|.....+-... .+.. ++ --+..++. +..++...........+.+.+.....+...+..+.... .++ T Consensus 129 ~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~al~dl~~r~~~~~~~~~~~Rf~~~~~~~~~a~~~Ea~~r~~g~~Ps 207 (382) T 3kb9_A 129 H-GRAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPG 207 (382) T ss_dssp T-TCHHHHHHHHHHHHHHHHSCGGGTTCSSHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC T ss_pred C-CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 8-878999999999997763677687754799999999999998216999999999999999999999999987699999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 89999999865268999999999986399998999--99999889999999999887513 Q T0584 173 VEECLEMEGNKTGALLACASSIGAVLGGADERTAD--TLEKYGYHLGLAFQAVDDLLGIW 230 (352) Q Consensus 173 ~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~--~l~~~G~~lG~afQi~DDilD~~ 230 (352) .++|+.+-..-+|..+..++..-+.-...+++..+ .+...-...+....+.|||..+. T Consensus 208 l~eYl~~R~~t~g~~~~~~l~e~~~g~~lp~~~~~~p~~~~l~~~~~~~~~l~NDl~S~~ 267 (382) T 3kb9_A 208 VEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLP 267 (382) T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999998881544999999998488788777608258999999999989887888888 No 28 >2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* Probab=96.16 E-value=0.048 Score=29.11 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=86.5 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99987788778876426899998999999986526899999999998639999899999999889999999999887513 Q T0584 151 ASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIW 230 (352) Q Consensus 151 ~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~ 230 (352) ....+.+|...|+... .-.|.+++..-+..-.|+...+++.+ +++.+++ ....++.++|.|+|+.|=+.|+ T Consensus 109 ~l~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~vg~l~~~i---l~~~~~~---~~~~~A~~lG~AlQltniLRDv- 179 (293) T 2zco_A 109 SFYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPI---LSDHETH---QTYDVARRLGESLQLINILRDV- 179 (293) T ss_dssp HHHHHHHHHHHGGGCC--CCSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCCH---HHHHHHHHHHHHHHHHHHHHCH- T ss_pred HHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHCCHHHHHHHHH---HCCCCCH---HHHHHHHHHHHHHHHHHHHHHH- T ss_conf 9999999999862468--89999999999997232899999999---7666625---3799999997999999999962- Q ss_pred CCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 78456167623233405677899999863896789999997531000344568989999999999864908999999999 Q T0584 231 GDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARR 310 (352) Q Consensus 231 ~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~~~~~ 310 (352) +.|+..|+.-+|.=..-+.+-..+ .+. ... .++ .+..+ +..-...++. T Consensus 180 ----------~eD~~~gR~YLP~e~L~~~gvs~~-~l~---~~~--------~~~-~~~~~---------~~~~~~~A~~ 227 (293) T 2zco_A 180 ----------GEDFENERIYFSKQRLKQYEVDIA-EVY---QNG--------VNN-HYIDL---------WEYYAAIAEK 227 (293) T ss_dssp ----------HHHHHTTCCCSCHHHHHHTTCCHH-HHH---HHC--------CCH-HHHHH---------HHHHHHHHHH T ss_pred ----------HHHHHCCCEECCHHHHHHCCCCHH-HHH---CCC--------CCH-HHHHH---------HHHHHHHHHH T ss_conf ----------999978981286999988599999-983---688--------998-99999---------9999999999 Q ss_pred HHHHHHHHHHHCCCCH Q ss_conf 9999999986179994 Q T0584 311 QHTIAIEALDAVDMPD 326 (352) Q Consensus 311 ~~~~A~~~L~~l~~~~ 326 (352) +...|...+..+|... T Consensus 228 ~~~~a~~~~~~lp~~~ 243 (293) T 2zco_A 228 DFRDVMDQIKVFSIEA 243 (293) T ss_dssp HHHHHHHTGGGSCTTH T ss_pred HHHHHHHHHHHCCHHH T ss_conf 9999987276389988 No 29 >1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2 Probab=95.68 E-value=0.078 Score=27.87 Aligned_cols=142 Identities=11% Similarity=-0.014 Sum_probs=89.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999998778877887642689999899999998652689999999999863999989999999988999999999988 Q T0584 147 RLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDL 226 (352) Q Consensus 147 ~~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDi 226 (352) .+.+....+..|...+... .-.|.+++.+-+.+--|....+.+.+-..-... ........+.+.++|+|+|+.|=+ T Consensus 112 ~i~~~~~~m~~gm~d~~~~---~~~t~~dL~~Ycy~VAG~VG~ml~~l~~~~~~~-~~~~~~~~~~A~~lG~AlQltNIl 187 (340) T 1ezf_A 112 VIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFE-DPLVGEDTERANSMGLFLQKTNII 187 (340) T ss_dssp HHHHHHHHHHHHHHHHHTS---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSS-CHHHHHCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999998489986445---789999999999980269999999996768875-120598999999999999999999 Q ss_pred HHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 75137845616762323340567789999986389678999999753100034456898999999999986490899999 Q T0584 227 LGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTAD 306 (352) Q Consensus 227 lD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~i~~i~~~i~~~ga~e~a~~ 306 (352) .|+. +|+..|..-||-=..-+.+-..+. +. .++.-..+.. ++..-.. T Consensus 188 RDv~-----------eD~~~gR~YlP~e~l~~~g~~~~d-----l~-----------~~~~~~~~~~------~~~~l~~ 234 (340) T 1ezf_A 188 RDYL-----------EDQQGGREFWPQEVWSRYVKKLGD-----FA-----------KPENIDLAVQ------CLNELIT 234 (340) T ss_dssp HTHH-----------HHHHHTCCCSCHHHHTTTCSSGGG-----GG-----------SGGGHHHHHH------HHHHHHH T ss_pred HHHH-----------HHHHCCCEECCHHHHHHCCCCHHH-----HH-----------CCCCCHHHHH------HHHHHHH T ss_conf 9769-----------899579756869999885999999-----85-----------7768899999------9999999 Q ss_pred HHHHHHHHHHHHHHHCCCC Q ss_conf 9999999999998617999 Q T0584 307 EARRQHTIAIEALDAVDMP 325 (352) Q Consensus 307 ~~~~~~~~A~~~L~~l~~~ 325 (352) .+..|...|++.+..+|.. T Consensus 235 ~A~~h~~~a~~yl~~Lp~~ 253 (340) T 1ezf_A 235 NALHHIPDVITYLSRLRNQ 253 (340) T ss_dssp HHHTTHHHHHHHHHTCCCH T ss_pred HHHHHHHHHHHHHHHCCCH T ss_conf 9999999999999878961 No 30 >1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Probab=95.39 E-value=0.1 Score=27.25 Aligned_cols=87 Identities=14% Similarity=0.021 Sum_probs=53.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHH Q ss_conf 9999999999877887788764268-9-99989999999865268999999999986399998999--999998899999 Q T0584 144 ATRRLTKASRSLIDGQAQDISYEHR-D-RVSVEECLEMEGNKTGALLACASSIGAVLGGADERTAD--TLEKYGYHLGLA 219 (352) Q Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~-~-~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~--~l~~~G~~lG~a 219 (352) ....+.+.+.....++..+..+... . -.|.++|+.+-..-+|..+..++.--+.--..+++..+ .+..+-+..+.. T Consensus 135 ~~~r~~~~~~~~~~~~~~e~~~r~~~~~~psl~eYl~~R~~~~g~~~~~~l~e~~~g~~lp~~~~~~~~~~~l~~~~~~~ 214 (337) T 1ps1_A 135 WCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDV 214 (337) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999975347889999999999887025778999999985898899999611458999999999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999887513 Q T0584 220 FQAVDDLLGIW 230 (352) Q Consensus 220 fQi~DDilD~~ 230 (352) --+.||+..+- T Consensus 215 i~l~NDl~S~~ 225 (337) T 1ps1_A 215 NLLLNDIASLE 225 (337) T ss_dssp HHHHHHHHTHH T ss_pred HHHHHHHHHHH T ss_conf 99988988899 No 31 >3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Probab=93.53 E-value=0.27 Score=24.69 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=39.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9998999999986526899999999998639999899999999889999999999887513 Q T0584 170 RVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIW 230 (352) Q Consensus 170 ~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~ 230 (352) ..+.++|+.+=..-.|..+..++.--+.=-..+++....+..+-...+..--+.||+.-+- T Consensus 165 ~psl~eYl~~R~~~~G~~~~~~l~e~~~g~~lp~~~~~~~~~l~~~~~~~v~l~NDi~S~~ 225 (320) T 3bny_A 165 PMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYE 225 (320) T ss_dssp CCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999986342979999999975799998887899999999999999984788999 No 32 >2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Probab=82.06 E-value=1.9 Score=19.79 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=55.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHH---HHHHHHHH Q ss_conf 99999999998778877887642689-999899999998652689999-99999986399998999999---99889999 Q T0584 144 ATRRLTKASRSLIDGQAQDISYEHRD-RVSVEECLEMEGNKTGALLAC-ASSIGAVLGGADERTADTLE---KYGYHLGL 218 (352) Q Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~s~~~y~~~~~~KTa~Lf~~-a~~~ga~lag~~~~~~~~l~---~~G~~lG~ 218 (352) ++..+-++...++.+=..+..|.... .+|.++|+++..-.+|...-. +..+| +--..+.+..+.+. .+-...++ T Consensus 356 ~~~~lk~~w~~l~~~yl~EAkW~~~gyvPt~eEYl~~~~iS~~~~~l~~~~~~~-~g~~~t~e~~~~~~~~p~i~~~~~~ 434 (543) T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFR-VTDSFTKETVDSLYKYHDLVRWSSF 434 (543) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHH-HSSCCCHHHHHHHTTTCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCEEEEECHHHHHHHHHHH-CCCCCCHHHHHHHHHCHHHHHHHHH T ss_conf 999999999999999999999995698897364500046662367999999983-7887689999733125189999999 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999887513 Q T0584 219 AFQAVDDLLGIW 230 (352) Q Consensus 219 afQi~DDilD~~ 230 (352) ...+.||+..+. T Consensus 435 i~RL~nDi~s~k 446 (543) T 2ong_A 435 VLRLADDLGTSV 446 (543) T ss_dssp HHHHHHHHHSSH T ss_pred HHHHHHHHHHHH T ss_conf 999832647878 No 33 >1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport protein; HET: PLM; 1.55A {Homo sapiens} PDB: 2pwn_A* 1wc8_A* 2cfh_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Probab=46.55 E-value=11 Score=15.39 Aligned_cols=55 Identities=24% Similarity=0.523 Sum_probs=36.7 Q ss_pred HHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCC Q ss_conf 52689999999999863------999989999999988999999999988751378456167623233405 Q T0584 183 KTGALLACASSIGAVLG------GADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQR 247 (352) Q Consensus 183 KTa~Lf~~a~~~ga~la------g~~~~~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~g 247 (352) -.+.||.+ ..|++++ ...++..+.|.+.|+++|+ .+.||++- +++.+.+.|+++- T Consensus 23 vNaELftL--TYGalVaQLlkD~e~~~~VN~qLdkMGynIG~--RLieeFLA------ks~~~rC~~fret 83 (200) T 1sz7_A 23 MSSELFTL--TYGALVTQLCKDYENDEDVNKQLDKMGFNIGV--RLIEDFLA------RSNVGRCHDFRET 83 (200) T ss_dssp CCSHHHHH--HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--HHHHHHHH------HSSCCSCCCHHHH T ss_pred HHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH--HHHHHHHH------HCCCCCCCCHHHH T ss_conf 01234456--68999999998615889999999983523006--77998874------1588410028999 No 34 >2hh6_A BH3980 protein; 10176605, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.04A {Bacillus halodurans} SCOP: a.69.4.1 Probab=42.92 E-value=6.3 Score=16.73 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=18.8 Q ss_pred HHHHHHHHHHHCCCHHHHCCCHH Q ss_conf 99999988751378456167623 Q T0584 219 AFQAVDDLLGIWGDPDATGKQTW 241 (352) Q Consensus 219 afQi~DDilD~~~~~~~~GK~~g 241 (352) .++|.+|++|+|.....-||++. T Consensus 55 ~~~il~~ildLfEe~AadG~~V~ 77 (113) T 2hh6_A 55 TKRIFGGILDLFEEGAAEGKKVT 77 (113) T ss_dssp HHHHHHHHHHHHHHHHHTTCCHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHH T ss_conf 89999999999999886799701 No 35 >1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Probab=40.70 E-value=13 Score=14.85 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=44.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9998999999986526899999999998639999899999999889999999999887513 Q T0584 170 RVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIW 230 (352) Q Consensus 170 ~~s~~~y~~~~~~KTa~Lf~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQi~DDilD~~ 230 (352) .+|.++|+.+-...+|..+..++..-+.--..+++....+.++-...+...-+.||+..+. T Consensus 151 ~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~l~~~~~~~~~l~NDi~S~~ 211 (300) T 1di1_A 151 IHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYD 211 (300) T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9899999999986023889999999973789988888999999999999999974576699 No 36 >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Probab=31.26 E-value=11 Score=15.42 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=19.2 Q ss_pred CCCCCCCCCCCCCCCEECCCCCHHH Q ss_conf 7877886555578721000464278 Q T0584 94 DDLMDGDEQRRHRDTVWKVHGPAQA 118 (352) Q Consensus 94 DDi~D~s~~RRG~pt~~~~~G~~~A 118 (352) ..-+-.+++|||..|.|.+-+.+.| T Consensus 41 egkIrRsPlRrGa~TlW~v~rEk~~ 65 (81) T 2htj_A 41 AGMVQRSPLRRGMATYWFLKGEKQA 65 (81) T ss_dssp HTSEEEECCSSSSSCEEEESSCSSS T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 0770158510016999999721340 No 37 >1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Probab=29.49 E-value=20 Score=13.76 Aligned_cols=189 Identities=11% Similarity=0.067 Sum_probs=87.3 Q ss_pred HHHHHHCCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------CCCCCEECCC Q ss_conf 546651587217899---9999999739997899999999999999997527877886555---------5787210004 Q T0584 46 GNPADGDGGKAVRPA---LAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQR---------RHRDTVWKVH 113 (352) Q Consensus 46 ~~~~~~~gGKr~Rp~---L~ll~~~~~g~~~~~~~~~AaavEliH~asLiHDDi~D~s~~R---------RG~pt~~~~~ 113 (352) ....+...-||+.+. .+-+++.+.-.-+..++. +++ +.-+...+.||+.|+...+ .|+|.-| T Consensus 52 ~~~~l~~~p~rl~~~~~t~~~l~ay~yP~~~~evl~-~Ia--~~t~~lf~lDD~~~e~~~~l~~f~~rLl~g~p~~h--- 125 (374) T 1yyq_A 52 QQQLLKVDPKRLQASLQTIVGMVVYSWAKVSKECMA-DLS--IHYTYTLVLDDSKDDPYPTMVNYFDDLQAGREQAH--- 125 (374) T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHHSTTSCHHHHH-HHH--HHHHHHHHHTTCCSCSHHHHTTHHHHHHHTCCCSS--- T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHH--HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC--- T ss_conf 455513688999999999987887727899999999-999--99999861244244426899999999975899987--- Q ss_pred CCHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 642789989999999999997-1799007999999999999877887788764268999989999999865268999999 Q T0584 114 GPAQAILVGDALFALANEVLL-ELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACAS 192 (352) Q Consensus 114 G~~~Ail~Gd~l~~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~s~~~y~~~~~~KTa~Lf~~a~ 192 (352) .++.| ++.-+..+. ..++ -....+..+..+..+|-.++..+.+.. ....+|..+-+.|+|.--..++ T Consensus 126 ----Pvl~g---~~~~l~~~~~~~g~----f~~~~i~~Stl~f~~a~~~E~~n~~~~-P~~~~Y~e~rR~~sG~~e~yal 193 (374) T 1yyq_A 126 ----PWWAL---VNEHFPNVLRHFGP----FCSLNLIRSTLDFFEGCWIEQYNFGGF-PGSHDYPQFLRRMNGLGHCVGA 193 (374) T ss_dssp ----HHHHH---HHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHTTCCCCC-TTCTTHHHHHHHHHHCHHHHHH T ss_pred ----HHHHH---HHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHCCCHHHHHHH T ss_conf ----79999---99999999987197----999999999999999999969842789-9867899999872786999999 Q ss_pred HHHHHHCCCC--HH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHH Q ss_conf 9999863999--98-----9999999988999999999988751378456167623233405677899999863896789 Q T0584 193 SIGAVLGGAD--ER-----TADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASE 265 (352) Q Consensus 193 ~~ga~lag~~--~~-----~~~~l~~~G~~lG~afQi~DDilD~~~~~~~~GK~~g~Dl~~gK~Tlpii~al~~~~~~~~ 265 (352) .+..... +. ...........+ -..||++-+. ++.. .++| ..+++..++...+-...+ T Consensus 194 ---~~fp~~~~pe~~~~~~~~~~i~~~~d~~----~~~NDi~S~~---KE~~--~~~e----~~N~v~~~a~~~g~s~~e 257 (374) T 1yyq_A 194 ---SLWPKEQFNERSLFLEITSAIAQMENWM----VWVNDLMSFY---KEFD--DERD----QISLVKNYVVSDEISLHE 257 (374) T ss_dssp ---TTCCTTTCCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHH---HHTT--CSSC----CCCHHHHHHHHHTCCHHH T ss_pred ---HHCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHH--CCCC----CCCHHHHHHHHHCCCHHH T ss_conf ---9744214971655565524799999998----8753365420---5651--2787----511899999991899999 Q ss_pred HHH Q ss_conf 999 Q T0584 266 RLG 268 (352) Q Consensus 266 ~~~ 268 (352) .+. T Consensus 258 AL~ 260 (374) T 1yyq_A 258 ALE 260 (374) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 38 >2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Probab=27.08 E-value=22 Score=13.51 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=56.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHH---HHHHHHHH Q ss_conf 99999999998778877887642689-99989999999865268999-999999986399998999999---99889999 Q T0584 144 ATRRLTKASRSLIDGQAQDISYEHRD-RVSVEECLEMEGNKTGALLA-CASSIGAVLGGADERTADTLE---KYGYHLGL 218 (352) Q Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~s~~~y~~~~~~KTa~Lf~-~a~~~ga~lag~~~~~~~~l~---~~G~~lG~ 218 (352) ++..+-+++..++.+-..+..|.... .+|.++|++...--+|...- ....+|. --..+.+..+.+. .+-...++ T Consensus 383 ~~~ylk~~w~~l~~ayl~EAkW~~~gyvPt~eEYl~n~~iS~g~~~l~~~~~~~m-g~~~t~e~~~~~~~~p~ii~~~~~ 461 (569) T 2j5c_A 383 STPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRL-TDSIEEEAAESMHKYHDIVRASCT 461 (569) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHS-CSSCCHHHHHHHTTTCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECHHHHHHHHHHHC-CCCCCHHHHHHHHHCHHHHHHHHH T ss_conf 8999999999999999999999825977888998775421000899999999714-876659999764004599999999 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999887513 Q T0584 219 AFQAVDDLLGIW 230 (352) Q Consensus 219 afQi~DDilD~~ 230 (352) .+.+.||+..+. T Consensus 462 I~RL~nDi~s~k 473 (569) T 2j5c_A 462 ILRLADDMGTSL 473 (569) T ss_dssp HHHHHHHHHC-- T ss_pred HHHHCCHHHHHH T ss_conf 999733526767 No 39 >2o3l_A Hypothetical protein; NP_979748.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacillus cereus atcc 10987} SCOP: a.69.4.1 Probab=26.16 E-value=17 Score=14.18 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=15.1 Q ss_pred HHHHHHHHHHCCCHHHHCCCH Q ss_conf 999998875137845616762 Q T0584 220 FQAVDDLLGIWGDPDATGKQT 240 (352) Q Consensus 220 fQi~DDilD~~~~~~~~GK~~ 240 (352) .+|.+||+|++-....-||++ T Consensus 40 ~~il~dil~l~eeaq~~G~~v 60 (85) T 2o3l_A 40 LHIQYELIDLFEAGAAEGRQV 60 (85) T ss_dssp HHHHHHHHHHHHHHHHHTCCH T ss_pred HHHHHHHHHHHHHHHHCCCCH T ss_conf 999999999999999859989 No 40 >5eau_A 5-EPI-aristolochene synthase; isoprenoid synthase, natural products biosynthesis, isoprenoid cyclase; HET: FFF; 2.15A {Nicotiana tabacum} SCOP: a.102.4.1 a.128.1.3 PDB: 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 5eat_A* Probab=23.21 E-value=27 Score=13.08 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=53.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHH---HHHHHHH Q ss_conf 9999999999877887788764268-99998999999986526899-99999999863999989999999---9889999 Q T0584 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALL-ACASSIGAVLGGADERTADTLEK---YGYHLGL 218 (352) Q Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~~-~~~s~~~y~~~~~~KTa~Lf-~~a~~~ga~lag~~~~~~~~l~~---~G~~lG~ 218 (352) ++..+-++...++.+=..+-.|... ..+|.++|++...--+|... ...+.+| ++...++..+.+.. +-+..++ T Consensus 361 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~n~~vS~g~~~l~~~~~~~--~~~~~~e~~~~~~~~p~i~~~~~~ 438 (548) T 5eau_A 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLG--MKSATEQDFEWLSKNPKILEASVI 438 (548) T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHS--CTTCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECHHHHHHHHHHH--CCCCCHHHHHHHHCCHHHHHHHHH T ss_conf 199999999999999999999997699995565525336765389999999986--488768899865024799999999 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999887513 Q T0584 219 AFQAVDDLLGIW 230 (352) Q Consensus 219 afQi~DDilD~~ 230 (352) .+-+.||+..+. T Consensus 439 i~RL~nDi~s~~ 450 (548) T 5eau_A 439 ICRVIDDTATYE 450 (548) T ss_dssp HHHHHHHHHSHH T ss_pred HHHHHHHHHHHH T ss_conf 999845534667 No 41 >3c4c_A B-RAF proto-oncogene serine/threonine-protein kinase; serine/threonine kinase, ATP-binding, cardiomyopathy, cytoplasm, disease mutation; HET: 324; 2.57A {Homo sapiens} PDB: 3c4d_A* 3d4q_A* 3ii5_A* 2fb8_A* 3idp_A* 1uwh_A* 1uwj_A* 3lb7_A Probab=23.17 E-value=26 Score=13.10 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999999999999752787 Q T0584 76 GVPGAVAVELVHNFSLLHDDL 96 (352) Q Consensus 76 ~~~~AaavEliH~asLiHDDi 96 (352) +..+|.+++.+|.-..||-|| T Consensus 114 ~~qia~gl~yLH~~~iiHrDl 134 (280) T 3c4c_A 114 ARQTARGMDYLHAKSIIHRDL 134 (280) T ss_dssp HHHHHHHHHHHHHTTCCCCCC T ss_pred HHHHHHHHHHHHHCCCCCCCC T ss_conf 999999999998599547768 No 42 >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 2ogv_A Probab=21.40 E-value=29 Score=12.87 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9999999999999997527877 Q T0584 76 GVPGAVAVELVHNFSLLHDDLM 97 (352) Q Consensus 76 ~~~~AaavEliH~asLiHDDi~ 97 (352) ...+|.|++.+|.-..||-||- T Consensus 170 ~~qia~gl~yLH~~~ivHrDLK 191 (333) T 2i1m_A 170 SSQVAQGMAFLASKNCIHRDVA 191 (333) T ss_dssp HHHHHHHHHHHHHTTEECSCCS T ss_pred HHHHHHHHHHHHHCCEEECCCC T ss_conf 9999999999861993506677 Done!